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Genomic sequence analysis tools and a genotype-phenotype association platform in the virus pathogen resource Brett Pickett 1 , Eva Rab 1 , Jyothi Noronha 1 , R. Burke Squires 1 , Victoria Hunt 1 , Mengya Liu 2 , Liwei Zhou 3 , Chris Larson 4 , Jonathan Dietrich 3 , Edward B. Klem 3 , Richard H. Scheuermann 1,5 1 Department of Pathology, 5 Division of Biomedical Informatics, Univ. of Texas Southwestern Medical Center, Dallas, TX; 2 Southern Methodist Univ., Dallas, TX; 3 Northrop Grumman Health Solutions, Rockville MD; 4 Vecna Technologies, Greenbelt MD. Background Results Methods The Sequence Feature (SF) definitions associated with Dengue virus type 2, hepatitis C virus subtype 1a, and Orthopoxvirus (Vaccinia) in ViPR were obtained through manual extraction of data from UniProt 1 , GenBank 2 , and the Immune Epitope Database 3 . The SF definitions were then examined and validated by expert researchers for each respective virus taxon before being made publicly available for ViPR users. These homologous sequence regions from all strains belonging to the same taxa are then aligned and compared using Multiple Sequence Comparison by Log- Expectation (MUSCLE) 4 to identify each distinct Variant Type (VT). Figure 2: Exploring Sequence Feature Variant Types in ViPR (A) A screenshot of the various Sequence Feature definitions for DENV-2 stored in ViPR. Selecting any of these SFs will load the Sequence Feature Details page (B), which displays strain information, SF information, available 3D protein structures, and a table containing all Variant Types for the selected Sequence Feature. References 1 (2011) Ongoing and future developments at the Universal Protein Resource. Nucleic acids research, 39, D214-219. 2 Sayers, E.W., Barrett, T., Benson, D.A., Bolton, E., Bryant, S.H., Canese, K., Chetvernin, V., Church, D.M., DiCuccio, M., Federhen, S. et al. (2011) Database resources of the National Center for Biotechnology Information. Nucleic acids research, 39, D38-51. 3 Vita, R., Zarebski, L., Greenbaum, J.A., Emami, H., Hoof, I., Salimi, N., Damle, R., Sette, A. and Peters, B. (2010) The immune epitope database 2.0. Nucleic acids research, 38, D854-862. Edgar, R.C., 2004. 4 MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC bioinformatics 5, 113. 5 Waterhouse, A.M., Procter, J.B., Martin, D.M., Clamp, M. and Barton, G.J. (2009) Jalview Version 2--a multiple sequence alignment editor and analysis workbench. Bioinformatics, 25, 1189-1191. 6 Zmasek, C.M. and Eddy, S.R. (2001) ATV: display and manipulation of annotated phylogenetic trees. Bioinformatics, 17, 383-384. 7 Hanson, R. (2010) Jmol - a paradigm shift in crystallographic visualization. Journal of Applied Crystallography, 43, 1250-1260. Acknowledgements We would like to thank Elliot Lefkowitz, Carla Kuiken, Bernard Moss, and R. Pad Padmanabhan for reviewing and validating the SFVT definitions, as well as the primary data providers for the sequence data that was used throughout this study. We also recognize the scientific and technical personnel responsible for supporting and developing the Virus Pathogen Database and Analysis Resource (ViPR), which has been wholly supported with federal funds from the NIAID, NIH, Department of Health and Human Services (N01AI2008038 to R.H.S.). Figure 4: Additional Information and Details Available in the Virus Pathogen Database and Analysis Resource (ViPR). The ViPR homepage is the portal used to access the various types of data and advanced functionality within the system. Such integrated features include: (A) examining 3D protein structures using Jmol 7 , (B) retrieving results from customizable queries, (C) examining the details associated with any gene/protein from any strain stored in the resource —in this case, the E protein from the DENV-2/US/BID-V1166/1987 strain, and (D) viewing the contents of the Workbench containing previously-saved search and analysis results. Conclusions The Sequence Feature Variant Type (SFVT) component within ViPR combines the strength of a relational database with a suite of integrated tools to support everything from basic sequence and structural analyses to more advanced genotype-phenotype studies. By defining entire functional regions, the SFVT approach can be used to enhance the results from genotype-phenotype studies by reducing or eliminating much of the background “noise” which is commonly present with the single residue approach. Researchers are thus able to form better hypotheses for experimental validation by determining the molecular mechanism of action for any SF. Figure 1: ViPR and SFVT definitions. (Clockwise from top left) A screenshot of the ViPR homepage. A display of two example sequence features on the 3D structure of the DENV-2 E protein with individual sequence variations for a beta sheet existing between polyprotein residues 617 and 624 (SF_70) visible below the structure. List of all current SF definitions for Dengue virus serotype 2 (DENV-2). The Virus Pathogen Database and Analysis Resource (ViPR, www.viprbrc.org ), sponsored by the National Institute of Allergy and Infectious Diseases serves as a single publicly-accessible repository of integrated datasets and analysis tools for 14 different virus families that are infectious to humans, comprised of viruses classified as Category A-C priority pathogens and others having a notable impact on public health including: Arenaviridae , Bunyaviridae , Caliciviridae , Coronaviridae , Filoviridae, Flaviviridae, Hepeviridae, Herpesviridae, Paramyxoviridae, Picornaviridae, Poxviridae, Reoviridae, Rhabdoviridae, and Togaviridae. The goal of the ViPR Bioinformatics Resource Center is to provide the data and analytical tools to support wet-bench virology researchers focusing on the development of diagnostics, prophylactics, vaccines, and treatments for these pathogens. The ViPR system combines information including GenBank sequence records, gene annotations, and strain metadata Gene Ontology (GO) classifications UniProtKB protein annotations Protein Databank (PDB) 3D protein structures Immune epitopes from the Immune Epitope Database (IEDB) Clinical data Additional data derived from computational algorithms ViPR provides scientists the ability to search, analyze, visualize, and store results to their own Workbench area in the ViPR “cloud” thus providing access to data and results independent of the user’s physical location. To assist in the analysis of the current deluge of sequence data, ViPR has developed an infrastructure capable of storing characterized structural, functional, immune epitope, or sequence alteration regions of a protein (termed Sequence Features) that have been manually curated from either the literature or other public repositories. All related sequences are then automatically analyzed to identify the unique amino acid sequence variations that exist in the sequence record for the same viral taxon (Variant Types). Thus, the Sequence Feature Variant Type (SFVT) component allows users to quickly query and analyze the genotypic changes for all sequence records that could be associated with a given phenotype. Figure 3: Analytical tools available for SFVT data. (Clockwise from top left) A multiple sequence alignment calculated with MUSCLE 4 and visualized with JalView 5 in ViPR. A metadata-driven comparative genomics analysis tool to identify individual positions that correlate with a metadata attribute. Phylogenetic trees, without labels, showing the relationship between all DENV-2 E sequences and all VTs for SF_70. A portion of a DENV-2 phylogenetic tree that has been automatically colored according to year of isolation using the Archaeopteryx 6 tool. Loading Virus Pathogen Database and Analysis Resource (ViPR)... Search Search our comprehensive database for: Analyze Analyze data online: Save to Workbench Use your workbench to: Browse All Search Types Browse All Tools Single-Stranded Positive-Sense RNA Single-Stranded Negative-Sense RNA Double-Stranded RNA Double-Stranded DNA For influenza virus data and tools, use the Influenza Research Database, a separate resource created by the ViPR team. Two DBPs Funded!! Through the Driving Biological Projects (DBP) program, the ViPR team will be collaborating with two groups to extend ViPR in support of more host-pathogen interaction data. Clinical Data for Human Dengue Virus Isolates!! In this release of ViPR we have added extensive clinical data for ~2600 Dengue Virus isolates. Includes patient demographics and measures of disease severity, immune response, evolution, etc. Isolates from both Eastern and Western Hemispheres. All linked to complete genome sequences! Try our Metadata Genome Compare tool for custom comparative analysis. Search, or download complete dataset. Like Brett Pickett, Burke Squires and 16 Genome Statistics for Virus Families Families 14 Genera 70 Species 912 Strains 50,196 Segments 64,367 Click on family or species of interest in taxonomy below to view viral genomes, or click here to view in list format. Genomes Genes & proteins Immune epitopes 3D protein structures Identify similar sequences (BLAST) Align sequences (MSA) Identify short peptides in proteins Visualize aligned sequences Store data in working sets for future analysis Integrate ViPR data with your laboratory data Store analysis results Share results and data with collaborators Virus Families Caliciviridae Coronaviridae Flaviviridae Hepeviridae Picornaviridae Togaviridae Arenaviridae Bunyaviridae Filoviridae Paramyxoviridae Rhabdoviridae Reoviridae Herpesviridae Poxviridae Family: Arenaviridae (1 Genus - 1118 complete genomes) Family: Bunyaviridae (4 Genera - 2800 complete genomes) Family: Caliciviridae (6 Genera - 451 complete genomes) Family: Coronaviridae (2 Subfamilies - 536 complete genomes) Family: Filoviridae (2 Genera - 96 complete genomes) Start to type species to get suggestions Jump Click on a featured virus of interest to go to virus-specific home page. Click on family below or use Virus Taxonomy Browser at bottom of this page to select family or species of interest. Or click here to view taxonomy in list format. Jump to species in taxonomy: Featured Viruses Dengue Hepatitis C virus Highlights ViPR Workbench The ViPR Workbench allows users to save 'working sets' of sequences, searches and analysis results between web sessions in their own private workspace. Users can share working sets or analysis results with collaborators. Key Highlights: Save and organize working sets of sequences, analysis results and search criteria Visualize saved analysis results Share working sets and analysis results with others Upload personal sequences and combine with existing working sets Go to Workbench Virus Taxonomy Browser Connect with Us Influenza Research Database Data Summary Updated April 26, 2011 Announcements About Us Announcements Links Resources Support You are logged in as [email protected] Proteins Type Structural SFs Functional SFs Epitopes Sequence Alterations Total no. of SFs C Dengue virus 2 10 - - - 10 C,preM Dengue virus 2 2 - - - 2 preM Dengue virus 2 6 - - - 6 preM,M Dengue virus 2 1 - - - 1 preM,E Dengue virus 2 1 - - - 1 M Dengue virus 2 1 - - - 1 M,E Dengue virus 2 1 - - - 1 E Dengue virus 2 54 1 3 - 58 E,NS1 Dengue virus 2 1 - - - 1 E,NS1,NS2A Dengue virus 2 1 - - - 1 NS1 Dengue virus 2 3 - 26 - 29 NS1,NS2A Dengue virus 2 1 - - - 1 NS2A Dengue virus 2 5 - - - 5 NS2A,NS2B Dengue virus 2 2 - - - 2 NS2B Dengue virus 2 2 - - - 2 NS2B,NS3 Dengue virus 2 2 - - - 2 NS3 Dengue virus 2 7 8 - 2 17 NS3,NS4A Dengue virus 2 2 - - - 2 NS4A Dengue virus 2 2 - - - 2 NS4A,2k Dengue virus 2 1 - - - 1 2k Dengue virus 2 2 - - - 2 2k,NS4B Dengue virus 2 1 - - - 1 NS4B Dengue virus 2 9 - - - 9 NS4B,NS5 Dengue virus 2 2 - - - 2 NS5 Dengue virus 2 24 4 - - 28 VT-1 F E I M D L E K VT-2 F E I T D L E K VT-3 F E I M D L E R VT-4 F E M M D L E K VT-5 F E I T D S E K SF 70 PDB:1OK8 Dengue_Virus_2_experimentally-determined-epitope_328(10) Dengue_Virus_2_Beta-strand_617(8) Loading Virus Pathogen Database and Analysis Resource (ViPR)... Cite ViPR Tutorials Report a Bug Request Web Training Contact Us Release Date: May 27, 2011 This project is funded by the National Institute of Allergy and Infectious Diseases ( NIH / DHHS) under Contract No. HHSN272200900041C and is a collaboration between Northrop Grumman Health IT, University of Texas Southwestern Medical Center and Vecna Technologies. Virus images courtesy of CDC Public Health Image Library, Wellcome Images, U.S. Department of Veterans Affairs , Science of the Invisible and ViralZone, Swiss Institute of Bioinformatics. Protein Name E Type 2 Sequence Feature Name Dengue_Virus_2_Beta-strand_617(8) Sequence Feature Id Dengue_Virus_2_polyprotein_SF70 Position 617-624 Comment -N/A- VT-1 Strain (reference strain) S1 vaccine / M19197 Sequence Feature Definition Strain S1 vaccine Variant Type in Sequence Feature Definition Strain VT-1 Source Position 617-624 Source Sequence Accession M19197 Protein Structure 1L9K, 1OAN, 1OK8, 1OKE, 1P58, 1R6A, 1R6R, 1TG8, 1TGE, 1THD, 2B6B, 2BHR, 2BMF, 2FOM, 2P1D, 2P3L, 2P3O, 2P3Q, 2P40, 2P41 Source Publication Uniprot: P12823 Evidence Codes IEA Excel Download MSA Download View Phylogenetic Tree Find a VT(s) Search Reset Fill wildcards Strain Count VARIANT TYPES Edit specific positions in this VT-1 sequence with IUPAC symbols or use "?" as a wild-card. If necessary, use the horizontal scroll bar to access the entire SF. Click Search to find VT(s) conforming to the edited sequence. Click Reset to restore this panel to the default VT-1 sequence. Enter Sequence Variation to Find 617 F 618 E 619 I 620 M 621 D 622 L 623 E 624 K Variant Type 643 VT-1 270 VT-2 7 VT-3 1 VT-4 1 VT-5 Sequence Variation 617 618 619 620 621 622 623 624 F E I M D L E K - - - T - - - - - - - - - - - R - - M - - - - - - - - T - S - - Total Variations 0 1 1 1 2 "?" : A question mark indicates the sequence is unknown. "-" : Indicates the same letter as in the VT-1 sequence. Sequence Feature Details Home Sequence Feature Variant Types Sequence Features Sequence Feature Details (Dengue_Virus_2_Beta-strand_617(8)) Dengue SEARCH DATA ANALYZE & VISUALIZE WORKBENCH VIRUS FAMILIES HOME About Us Announcements Links Resources Support Sign Out You are logged in as [email protected] Loading Virus Pathogen Database and Analysis Resource (ViPR)... Download 1 2 Next > Page: 1 of 2 Your Selected Items: 1 items selected | Deselect All Select all 54 results Feature Identifier Sequence Feature Name Variant Types Category Amino Acid Position Source/Reference Comments Dengue_Virus_2_polyprotein_SF29 Dengue_Virus_2_Beta-strand_291(3) 1 structural 291- 293 UniProt: P12823 -N/A- Dengue_Virus_2_polyprotein_SF30 Dengue_Virus_2_Beta- strand_295(12) 1 structural 295- 306 UniProt: P12823 -N/A- Dengue_Virus_2_polyprotein_SF31 Dengue_Virus_2_Beta-strand_311(5) 1 structural 311- 315 UniProt: P12823 -N/A- Dengue_Virus_2_polyprotein_SF32 Dengue_Virus_2_Beta- strand_320(13) 10 structural 320- 332 UniProt: P12823 -N/A- Dengue_Virus_2_polyprotein_SF33 Dengue_Virus_2_Beta- strand_334(19) 13 structural 334- 352 UniProt: P12823 -N/A- Dengue_Virus_2_polyprotein_SF38 Dengue_Virus_2_Beta- strand_370(10) 6 structural 370- 379 UniProt: P12823 -N/A- Dengue_Virus_2_polyprotein_SF41 Dengue_Virus_2_Beta- strand_389(21) 16 structural 389- 409 UniProt: P12823 -N/A- Dengue_Virus_2_polyprotein_SF43 Dengue_Virus_2_Beta- strand_415(10) 5 structural 415- 424 UniProt: P12823 -N/A- Dengue_Virus_2_polyprotein_SF46 Dengue_Virus_2_Beta-strand_440(5) 7 structural 440- 444 UniProt: P12823 -N/A- Dengue_Virus_2_polyprotein_SF47 Dengue_Virus_2_Beta-strand_450(6) 11 structural 450- 455 UniProt: P12823 -N/A- Dengue_Virus_2_polyprotein_SF49 Dengue_Virus_2_Beta-strand_459(9) 6 structural 459- 467 UniProt: P12823 -N/A- Dengue_Virus_2_polyprotein_SF52 Dengue_Virus_2_Beta-strand_476(6) 3 structural 476- 481 UniProt: P12823 -N/A- Dengue_Virus_2_polyprotein_SF53 Dengue_Virus_2_Beta-strand_484(6) 2 structural 484- 489 UniProt: P12823 -N/A- Dengue_Virus_2_polyprotein_SF55 Dengue_Virus_2_Beta-strand_500(3) 2 structural 500- 502 UniProt: P12823 -N/A- Dengue_Virus_2_polyprotein_SF57 Dengue_Virus_2_Beta-strand_518(3) 1 structural 518- 520 UniProt: P12823 -N/A- Dengue_Virus_2_polyprotein_SF58 Dengue_Virus_2_Beta-strand_530(3) 4 structural 530- 532 UniProt: P12823 -N/A- Dengue_Virus_2_polyprotein_SF61 Dengue_Virus_2_Beta-strand_547(4) 4 structural 547- 550 UniProt: P12823 -N/A- Dengue_Virus_2_polyprotein_SF62 Dengue_Virus_2_Beta-strand_552(8) 7 structural 552- 559 UniProt: P12823 -N/A- Dengue_Virus_2_polyprotein_SF63 Dengue_Virus_2_Beta- strand_562(10) 5 structural 562- 571 UniProt: P12823 -N/A- Dengue_Virus_2_polyprotein_SF66 Dengue_Virus_2_Beta-strand_586(9) 4 structural 586- 594 UniProt: P12823 -N/A- Dengue_Virus_2_polyprotein_SF67 Dengue_Virus_2_Beta-strand_600(7) 9 structural 600- 606 UniProt: P12823 -N/A- Dengue_Virus_2_polyprotein_SF68 Dengue_Virus_2_Beta-strand_608(3) 5 structural 608- 610 UniProt: P12823 -N/A- Dengue_Virus_2_polyprotein_SF69 Dengue_Virus_2_Beta-strand_612(3) 3 structural 612- 614 UniProt: P12823 -N/A- Dengue_Virus_2_polyprotein_SF70 Dengue_Virus_2_Beta-strand_617(8) 5 structural 617- 624 UniProt: P12823 -N/A- Sequence Features (beta) Sequence features (SF) for each ViPR virus protein are obtained from published literature and other database sources and defined based on their functional properties, structural properties or sequence alterations. Evidence codes are assigned for each sequence feature to describe the source from which it was obtained (e.g.: ‘EXP’ for Pubmed ID or IEDB ID which have experimental evidence, ‘IEA’ for UniProt ID which is inferred from electronic annotation, etc.). The extent of sequence variation for each SF is described as ‘Variant Types’ (VT) by computing the location of each SF in the context of a multiple sequence alignment to a reference strain. The reference strain has been selected by the IRD team based on criteria regarding various aspects of strain characterization (please see result page for details). While VT-1 always represent the reference strain, at the time of addition of SF to the database, the order of all other VTs is determined based on the number of strains that make up the variant types. Home Sequence Feature Variant Types Sequence Features Dengue SEARCH DATA ANALYZE & VISUALIZE WORKBENCH VIRUS FAMILIES HOME About Us Announcements Links Resources Support Sign Out You are logged in as [email protected] Loading Virus Pathogen Database and Analysis Resource (ViPR)... Cite ViPR Tutorials Report a Bug Request Web Training Contact Us Release Date: Jun 20, 2011 This project is funded by the National Institute of Allergy and Infectious Diseases ( NIH / DHHS) under Contract No. HHSN272200900041C and is a collaboration between Northrop Grumman Health IT, University of Texas Southwestern Medical Center and Vecna Technologies. Virus images courtesy of CDC Public Health Image Library, Wellcome Images, U.S. Department of Veterans Affairs , Science of the Invisible and ViralZone, Swiss Institute of Bioinformatics. Number of Sequences 922 Sequence Label Strain Name Save Analysis Generate Phylogenetic Tree Visualize Aligned Sequences SEQUENCE INFORMATION Jalview Applet Loading Data... 320 330 340 350 360 370 Sequence 56 ID: 1421_DF_07/16/2002 Residue: GLY (328) Help Calculate Colour Format View Select Edit File Home My Workbench Working... Align Sequ... Results Visualize Aligned Sequences Results Flaviviridae SEARCH DATA ANALYZE & VISUALIZE WORKBENCH VIRUS FAMILIES HOME About Us Announcements Links Resources Support Sign Out You are logged in as [email protected] VKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGD VKEIAETQHGTIVVRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRYVLRRLITVNPIVTEKDSPVNIEAEPPVGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRYVLGRLITVNPIVTEKDNPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKTPFEIMDLEKRHVLGRLTTVNPIVTEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVRYEGDGSPCKIPFEITDSEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVIEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVIEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVIEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRIQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVIEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVTGKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVTGKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVIEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVIEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVIEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRIQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVIEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRIQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVIEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGD VKEIAETQHGTIVIRVQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGD Loading Virus Pathogen Database and Analysis Resource (ViPR)... Generate Phylogenetic Tree Show P-Values Bar Plot Meta-data Genome Comparison Report (Ticket# MG_269940771975) Beta Release The Metadata Genome Comparison Analysis Tool consists of three parts: a multiple sequence alignment (using MUSCLE), a chi-square goodness of fit test to identify positions (columns) of the multiple sequence alignment that significantly differ from the expected (random) distribution of residues between all metadata groups, and a Pearson's chi-square test to identify the specific pairs of metadata groups that contribute to the observed statistical difference. When 3 or more groups are included in the analysis, the p-value from the Goodness of Fit test will identify columns having significant variation between all groups, while the Pearson's test will identify the specific pair(s) of groups that make the column significant (i.e. if those groups were not included in the analysis, the column would no longer be identified as significant). Note: when only two metadata groups are compared, the p-values for both statistical tests will be identical since all significant columns from the Goodness of Fit test can only differ between groups. Chi-square Goodness of Fit Test Result There are 21 positions that have a significant non-random distribution between the specified groups. Position Chi-square Value P-value Degree Freedom 74 54.181 0.04294 38 86 187.642 1.097E-21 38 94 486.104 4.106E-79 38 132 161.414 3.76E-17 38 134 100.144 1.686E-7 38 144 159.963 6.618E-17 38 167 198.607 1.253E-23 38 173 62.999 0.006587 38 206 238.452 7.235E-31 38 229 123.822 5.05E-11 38 231 99.448 2.114E-7 38 311 240.662 2.825E-31 38 328 102.217 8.56E-8 38 342 101.822 9.746E-8 38 343 918.298 5.251E-168 38 345 101.822 9.746E-8 38 347 714.501 1.042E-125 38 349 159.216 8.848E-17 38 487 191.557 2.236E-22 38 494 424.644 8.083E-67 38 495 260.809 5.0E-35 38 Hide Graph Home Metadata-Driven Comparative Genomics Analysis Results Flaviviridae SEARCH DATA ANALYZE & VISUALIZE WORKBENCH VIRUS FAMILIES HOME About Us Announcements Links Resources Support Sign Out You are logged in as [email protected] ViPR has integrated the contents of the SFVT component with the other data available throughout the resource. This approach allows researchers to quickly and efficiently 1) search for the desired data, 2) perform various analyses, 3) visualize the results, and 4) save the results to the personalized Workbench area in the ViPR “cloud”. 0.01 0.01 VT-2 VT-1 VT-3 VT-4 VT-5 DENV_2/US/BID_V1497/2005 DENV_2/US/BID_V1494/2004 DENV_2/US/BID_V1496/2004 DENV_2/US/BID_V1436/2004 DENV_2/US/BID_V1487/2003 DENV_2/US/BID_V1482/2003 DENV_2/US/BID_V1431/2004 DENV_2/US/BID_V592/2002 DENV_2/US/BID_V1470/2001 DENV_2/US/BID_V1468/2001 DENV_2/US/BID_V1462/2000 DENV_2/US/BID_V675/1998 DENV_2/US/BID_V1084/1998 DENV_2/US/BID_V1034/1998 DENV_2/US/BID_V1399/1997 DENV_2/US/BID_V1378/1996 DENV_2/US/BID_V682/1994 DENV_2/US/BID_V680/1994 DENV_2/US/BID_V1060/1989 DENV_2/US/BID_V685/1988 DENV_2/US/BID_V1180/1989 DENV_2/US/BID_V1170/1987 DENV_2/US/BID_V1167/1987 DENV_2/US/BID_V1177/1989 DENV_2/US/BID_V1168/1987 DENV_2/US/BID_V1166/1987 DENV_2/NI/BID_V2355/2007 DENV_2/NI/BID_V1200/2007 DENV_2/NI/BID_V1201/2007 DENV_2/NI/BID_V1214/2007 DENV_2/NI/BID_V2360/2007 DENV_2/NI/BID_V1212/2007 DENV_2/NI/BID_V1211/2007 DENV_2/NI/BID_V1202/2007 DENV_2/NI/BID_V1206/2007 DENV_2/NI/BID_V1196/2007 DENV_2/NI/BID_V1235/2007 DENV_2/NI/BID_V2357/2007 DENV_2/NI/BID_V1300/2007 DENV_2/NI/BID_V608/2006 DENV_2/NI/BID_V658/2005 DENV_2/NI/BID_V660/2005 DENV_2/NI/BID_V549/2005 DENV_2/NI/BID_V672/2005 DENV_2/NI/BID_V618/2005 DENV_2/NI/BID_V544/2005 DENV_2/US/BID_V1439/2005 DENV_2/US/BID_V677/1998 DENV_2/VN/BID_V1007/2006 0.01 Loading Virus Pathogen Database and Analysis Resource (ViPR)... Working Sets Searches Analysis Results Uploaded Files Access Owned by me Shared with me Public Special Unsaved Starred Trash Folders Home Folder Search Workbench My Workbench Content Move To Trash 1 2 3 Next > Page: 1 of 3 Displaying 20 per page Display Settings Your Selected Items: 0 items selected Select all 52 items Name Content Type Data Type Items Folder Access Date Modified DENV1-4_99-00_human-Genomes- metaCGAT1 Analysis Metadata Genome Compare -N/A- -N/A- Private 6/24/2011 12:00 PM EDT DENV1-4_99-00_human_Genome- FastME Analysis Tree -N/A- -N/A- Private 6/24/2011 10:52 AM EDT DENV1-4_99-00_human_Genomes- MSA Analysis Muscle -N/A- -N/A- Private 6/24/2011 10:45 AM EDT DENV1-4_99-00_human_Genomes Working Set Genome 82 -N/A- Private 6/24/2011 10:43 AM EDT DENV1-4_99- 00_human_Genome_DENV4 Working Set Genome 8 -N/A- Private 6/24/2011 10:42 AM EDT DENV1-4_99- 00_human_Genome_DENV3 Working Set Genome 33 -N/A- Private 6/24/2011 10:41 AM EDT DENV1-4_99- 00_human_Genome_DENV2 Working Set Genome 33 -N/A- Private 6/24/2011 10:40 AM EDT DENV1-4_99- 00_human_Genome_DENV1 Working Set Genome 8 -N/A- Private 6/24/2011 10:34 AM EDT Sharing ! Folders ! More Actions Home My Workbench Flaviviridae SEARCH DATA ANALYZE & VISUALIZE WORKBENCH VIRUS FAMILIES HOME About Us Announcements Links Resources Support Sign Out You are logged in as [email protected] Cite ViPR Tutorials Report a Bug Request Web Training Contact Us Release Date: May 27, 2011 This project is funded by the National Institute of Allergy and Infectious Diseases ( NIH / DHHS) under Contract No. HHSN272200900041C and is a collaboration between Northrop Grumman Health IT, University of Texas Southwestern Medical Center and Vecna Technologies. Virus images courtesy of CDC Public Health Image Library, Wellcome Images, U.S. Department of Veterans Affairs , Science of the Invisible and ViralZone, Swiss Institute of Bioinformatics. Add to Working Set Save Search Download 1 2 3 4 5 Next > Page: 1 of 5 Add to Working Set Save Search Download Your search returned 82 genomes. Search Criteria Displaying 20 per page Display Settings 1 2 3 4 5 Next > Page: 1 of 5 Genome Search Result Your Selected Items: 0 items selected Select all 82 genomes Strain Name Species Name GenBank Accession Sequence Length Date Host GenBank Host Country BR64905/RJ/99 Dengue virus 2 HQ012537 10173 1999 Human Homo sapiens Brazil DENV-1/BR/BID-V2374/2000 Dengue virus 1 FJ850070 10677 2000 Human Homo sapiens Brazil DENV-1/BR/BID-V2375/2000 Dengue virus 1 FJ850071 10685 2000 Human Homo sapiens Brazil DENV-1/CO/BID-V3378/1999 Dengue virus 1 GQ868561 10673 1999 Human Homo sapiens Colombia DENV-1/IPC/BID-V3919/2000 Dengue virus 1 GQ868637 10684 2000 Human Homo sapiens Cambodia DENV-1/KH/BID-V1978/2000 Dengue virus 1 FJ639669 10690 2000 Human Homo sapiens Cambodia DENV-1/VE/BID-V2171/1999 Dengue virus 1 FJ639743 10674 1999 Human Homo sapiens Venezuela DENV-1/VE/BID-V3548/2000 Dengue virus 1 GU131832 10460 2000 Human Homo sapiens Venezuela DENV-1/VE/BID-V3549/2000 Dengue virus 1 GU131833 10610 2000 Human Homo sapiens Venezuela DENV-2/BR/BID-V2376/2000 Dengue virus 2 FJ850072 10677 2000 Human Homo sapiens Brazil DENV-2/CO/BID-V3369/1999 Dengue virus 2 GQ868553 10625 1999 Human Homo sapiens Colombia DENV-2/NI/BID-V2344/2000 Dengue virus 2 FJ850060 10729 2000 Human Homo sapiens Nicaragua DENV-2/NI/BID-V2346/2000 Dengue virus 2 FJ850061 10690 2000 Human Homo sapiens Nicaragua DENV-2/NI/BID-V2362/2000 Dengue virus 2 FJ744745 10679 2000 Human Homo sapiens Nicaragua DENV-2/NI/BID-V2363/2000 Dengue virus 2 FJ744705 10669 2000 Human Homo sapiens Nicaragua DENV-2/NI/BID-V2364/2000 Dengue virus 2 FJ744744 10664 2000 Human Homo sapiens Nicaragua DENV-2/NI/BID-V2657/2000 Dengue virus 2 FJ850117 10679 2000 Human Homo sapiens Nicaragua DENV-2/NI/BID-V2658/2000 Dengue virus 2 FJ850118 10679 2000 Human Homo sapiens Nicaragua DENV-2/NI/BID-V2659/2000 Dengue virus 2 FJ850062 10679 2000 Human Homo sapiens Nicaragua DENV-2/NI/BID-V2660/2000 Dengue virus 2 FJ850063 10679 2000 Human Homo sapiens Nicaragua Your Selected Items: 0 items selected Top Run Analysis Run Analysis Home Genome Search Results Flaviviridae SEARCH DATA ANALYZE & VISUALIZE WORKBENCH VIRUS FAMILIES HOME About Us Announcements Links Resources Support Sign Out You are logged in as [email protected] Loading Virus Pathogen Database and Analysis Resource (ViPR)... Mature Peptide Details Gene: E strain information | genome image | Protein: Envelope protein protein information | protein sequence features | annotation | pfam domain | predicted epitopes | protein similarity | data sources | Strain Information Strain Name: DENV-2/US/BID-V1166/1987 View Strain Details Taxonomy: Flaviviridae -> Flavivirus -> Dengue virus -> Type 2 GenBank Host: Homo sapiens Host: Human Isolation Country: USA Collection Date: 1987 GenBank Genome Accession: EU482570 NCBI Taxon ID: 11060 Genome Image Map Hide Show Mature peptide annotation from both ViPR and VBRC project may appear as duplicate protein name. Protein: Envelope protein Protein Information *2 Protein Name: Envelope protein Polyprotein Polyprotein Protein Sequence Features ( SOP) Feature Variant Details Sequence Feature Subtype Count epitope 3 functional 1 structural 54 Download Add to Working Set Identify Similar Sequences (BLAST) Send Comments to Curator Home Genome... Results Strain Details (DENV-2/US/BID-V1166/1987) Protein/Gene Details (Envelope protein) Dengue SEARCH DATA ANALYZE & VISUALIZE WORKBENCH VIRUS FAMILIES HOME About Us Announcements Links Resources Support Sign Out You are logged in as [email protected] Cite ViPR Tutorials Report a Bug Request Web Training Contact Us Release Date: May 20, 2011 This project is funded by the National Institute of Allergy and Infectious Diseases ( NIH / DHHS) under Contract No. HHSN272200900041C and is a collaboration between Northrop Grumman Health IT, University of Texas Southwestern Medical Center and Vecna Technologies. Virus images courtesy of CDC Public Health Image Library, Wellcome Images, U.S. Department of Veterans Affairs , Science of the Invisible and ViralZone, Swiss Institute of Bioinformatics. Data Sources ID Source 1 NCBI 2 UniProtKB 3 IEDB A B A B C D

Southern Methodist Univ., Dallas, TX; Northrop Grumman Health … · 2020. 4. 24. · 6Zmasek, C.M. andEddy, S.R. (2001) ATV: display manipulation of annotated phylogenetic trees

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  • Genomic sequence analysis tools and a genotype-phenotype association platform in the virus pathogen resource

    Brett Pickett1, Eva Rab1, Jyothi Noronha1, R. Burke Squires1, Victoria Hunt1, Mengya Liu2, Liwei Zhou3, Chris Larson4, Jonathan Dietrich3, Edward B. Klem3, Richard H. Scheuermann1,5

    1Department of Pathology, 5Division of Biomedical Informatics, Univ. of Texas Southwestern Medical Center, Dallas, TX; 2Southern Methodist Univ., Dallas, TX; 3Northrop Grumman Health Solutions, Rockville MD; 4Vecna Technologies, Greenbelt MD.

    Background Results

    Methods The Sequence Feature (SF) definitions associated with Dengue virus

    type 2, hepatitis C virus subtype 1a, and Orthopoxvirus (Vaccinia) in ViPR were obtained through manual extraction of data from UniProt1, GenBank2, and the Immune Epitope Database3. The SF definitions were then examined and validated by expert researchers for each respective virus taxon before being made publicly available for ViPR users.

    These homologous sequence regions from all strains belonging to the same taxa are then aligned and compared using Multiple Sequence Comparison by Log- Expectation (MUSCLE)4 to identify each distinct Variant Type (VT).

    Figure 2: Exploring Sequence Feature Variant Types in ViPR (A) A screenshot of the various Sequence Feature definitions for DENV-2 stored in ViPR. Selecting any of these SFs will load the Sequence Feature Details page (B), which displays strain information, SF information, available 3D protein structures, and a table containing all Variant Types for the selected Sequence Feature.

    References 1(2011) Ongoing and future developments at the Universal Protein Resource. Nucleic acids research, 39, D214-219. 2 Sayers, E.W., Barrett, T., Benson, D.A., Bolton, E., Bryant, S.H., Canese, K., Chetvernin, V., Church, D.M., DiCuccio, M., Federhen, S. et al. (2011) Database resources of the National Center for Biotechnology Information. Nucleic acids research, 39, D38-51.

    3Vita, R., Zarebski, L., Greenbaum, J.A., Emami, H., Hoof, I., Salimi, N., Damle, R., Sette, A. and Peters, B. (2010) The immune epitope database 2.0. Nucleic acids research, 38, D854-862. Edgar, R.C., 2004.

    4MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC bioinformatics 5, 113. 5Waterhouse, A.M., Procter, J.B., Martin, D.M., Clamp, M. and Barton, G.J. (2009) Jalview Version 2--a multiple sequence alignment editor and analysis workbench. Bioinformatics, 25, 1189-1191.

    6Zmasek, C.M. and Eddy, S.R. (2001) ATV: display and manipulation of annotated phylogenetic trees. Bioinformatics, 17, 383-384. 7Hanson, R. (2010) Jmol - a paradigm shift in crystallographic visualization. Journal of Applied Crystallography, 43, 1250-1260.

    Acknowledgements We would like to thank Elliot Lefkowitz, Carla Kuiken, Bernard Moss, and R. Pad Padmanabhan for reviewing and validating the SFVT definitions, as well as the primary data providers for the sequence data that was used throughout this study. We also recognize the scientific and technical personnel responsible for supporting and developing the Virus Pathogen Database and Analysis Resource (ViPR), which has been wholly supported with federal funds from the NIAID, NIH, Department of Health and Human Services (N01AI2008038 to R.H.S.).

    Figure 4: Additional Information and Details Available in the Virus Pathogen Database and Analysis Resource (ViPR). The ViPR homepage is the portal used to access the various types of data and advanced functionality within the system. Such integrated features include: (A) examining 3D protein structures using Jmol7, (B) retrieving results from customizable queries, (C) examining the details associated with any gene/protein from any strain stored in the resource—in this case, the E protein from the DENV-2/US/BID-V1166/1987 strain, and (D) viewing the contents of the Workbench containing previously-saved search and analysis results.

    Conclusions The Sequence Feature Variant Type (SFVT) component within

    ViPR combines the strength of a relational database with a suite of integrated tools to support everything from basic sequence and structural analyses to more advanced genotype-phenotype studies. By defining entire functional regions, the SFVT approach can be used to enhance the results from genotype-phenotype studies by reducing or eliminating much of the background “noise” which is commonly present with the single residue approach. Researchers are thus able to form better hypotheses for experimental validation by determining the molecular mechanism of action for any SF.

    Figure 1: ViPR and SFVT definitions. (Clockwise from top left) A screenshot of the ViPR homepage. A display of two example sequence features on the 3D structure of the DENV-2 E protein with individual sequence variations for a beta sheet existing between polyprotein residues 617 and 624 (SF_70) visible below the structure. List of all current SF definitions for Dengue virus serotype 2 (DENV-2).

    The Virus Pathogen Database and Analysis Resource (ViPR, www.viprbrc.org), sponsored by the National Institute of Allergy and Infectious Diseases serves as a single publicly-accessible repository of integrated datasets and analysis tools for 14 different virus families that are infectious to humans, comprised of viruses classified as Category A-C priority pathogens and others having a notable impact on public health including: Arenaviridae, Bunyaviridae, Caliciviridae, Coronaviridae, Filoviridae, Flaviviridae, Hepeviridae, Herpesviridae, Paramyxoviridae, Picornaviridae, Poxviridae, Reoviridae, Rhabdoviridae, and Togaviridae.

    The goal of the ViPR Bioinformatics Resource Center is to provide the data and analytical tools to support wet-bench virology researchers focusing on the development of diagnostics, prophylactics, vaccines, and treatments for these pathogens. The ViPR system combines information including

    •  GenBank sequence records, gene annotations, and strain metadata •  Gene Ontology (GO) classifications •  UniProtKB protein annotations •  Protein Databank (PDB) 3D protein structures •  Immune epitopes from the Immune Epitope Database (IEDB) •  Clinical data •  Additional data derived from computational algorithms

    ViPR provides scientists the ability to search, analyze, visualize, and store results to their own Workbench area in the ViPR “cloud” thus providing access to data and results independent of the user’s physical location.

    To assist in the analysis of the current deluge of sequence data, ViPR has developed an infrastructure capable of storing characterized structural, functional, immune epitope, or sequence alteration regions of a protein (termed Sequence Features) that have been manually curated from either the literature or other public repositories. All related sequences are then automatically analyzed to identify the unique amino acid sequence variations that exist in the sequence record for the same viral taxon (Variant Types). Thus, the Sequence Feature Variant Type (SFVT) component allows users to quickly query and analyze the genotypic changes for all sequence records that could be associated with a given phenotype.

    Figure 3: Analytical tools available for SFVT data. (Clockwise from top left) A multiple sequence alignment calculated with MUSCLE4 and visualized with JalView5 in ViPR. A metadata-driven comparative genomics analysis tool to identify individual positions that correlate with a metadata attribute. Phylogenetic trees, without labels, showing the relationship between all DENV-2 E sequences and all VTs for SF_70. A portion of a DENV-2 phylogenetic tree that has been automatically colored according to year of isolation using the Archaeopteryx6 tool.

    Loading Virus Pathogen Database and Analysis Resource (ViPR)...

    SearchSearch our comprehensive database for:

    AnalyzeAnalyze data online:

    Save to WorkbenchUse your workbench to:

    Browse All Search Types Browse All Tools

    Single-Stranded Positive-Sense RNA Single-Stranded Negative-Sense RNA Double-Stranded RNA Double-Stranded DNA

    For influenza virus data and tools, usethe Influenza Research Database, aseparate resource created by the ViPRteam.

    Two DBPs Funded!!Through the Driving Biological Projects (DBP) program,the ViPR team will be collaborating with two groups toextend ViPR in support of more host-pathogeninteraction data.

    A group headed by Dr. Moriah Szpara and Dr. Lynn

    Clinical Data for HumanDengue Virus Isolates!!

    In this release of ViPR we have added extensiveclinical data for ~2600 Dengue Virus isolates.Includes patient demographics and measures ofdisease severity, immune response, evolution, etc.Isolates from both Eastern and WesternHemispheres.All linked to complete genome sequences!Try our Metadata Genome Compare tool for customcomparative analysis.Search, or download complete dataset.

    Like Brett Pickett, Burke Squires and 16

    Genome Statistics for Virus Families

    Families 14

    Genera 70

    Species 912

    Strains 50,196

    Segments 64,367

    Click on family or species of interest in taxonomy below to view viral genomes, or click here to view in list format.

    Genomes

    Genes & proteins

    Immune epitopes

    3D protein structures

    Identify similar sequences (BLAST)

    Align sequences (MSA)

    Identify short peptides in proteins

    Visualize aligned sequences

    Store data in working sets for future analysis

    Integrate ViPR data with your laboratory data

    Store analysis results

    Share results and data with collaborators

    Virus Families

    Caliciviridae

    Coronaviridae

    Flaviviridae

    Hepeviridae

    Picornaviridae

    Togaviridae

    Arenaviridae

    Bunyaviridae

    Filoviridae

    Paramyxoviridae

    Rhabdoviridae

    Reoviridae Herpesviridae

    Poxviridae

    Family: Arenaviridae (1 Genus - 1118 complete genomes) Family: Bunyaviridae (4 Genera - 2800 complete genomes) Family: Caliciviridae (6 Genera - 451 complete genomes) Family: Coronaviridae (2 Subfamilies - 536 complete genomes) Family: Filoviridae (2 Genera - 96 complete genomes) Family: Flaviviridae (3 Genera - 5967 complete genomes)

    Start to type species to get suggestions Jump

    Click on a featured virus of interest to go to virus-specific home page.

    Click on family below or use Virus Taxonomy Browser at bottom of this page to select family or species of interest. Orclick here to view taxonomy in list format.

    Jump to species in taxonomy:

    Featured Viruses

    Dengue Hepatitis C virus

    Highlights

    ViPR WorkbenchThe ViPR Workbench allows users to save 'working sets' ofsequences, searches and analysis results between websessions in their own private workspace. Users can shareworking sets or analysis results with collaborators.

    Key Highlights:Save and organize working sets of sequences,analysis results and search criteriaVisualize saved analysis resultsShare working sets and analysis results with othersUpload personal sequences and combine with existing working sets

    Go to Workbench

    Virus Taxonomy Browser

    Connect with Us

    Influenza Research Database

    Data Summary Updated April 26, 2011

    Announcements

    About Us Announcements Links Resources Support

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    Loading Virus Pathogen Database and Analysis Resource (ViPR)...

    Cite ViPR Tutorials Report a Bug Request Web Training Contact Us Release Date: May 27, 2011

    This project is funded by the National Institute of Allergy and Infectious Diseases (NIH / DHHS) under Contract No. HHSN272200900041C and is a collaboration between NorthropGrumman Health IT, University of Texas Southwestern Medical Center and Vecna Technologies. Virus images courtesy of CDC Public Health Image Library, Wellcome Images, U.S.Department of Veterans Affairs , Science of the Invisible and ViralZone, Swiss Institute of Bioinformatics.

    Sequence Feature Variant Types Beta Release

    Sequence Features (beta)Proteins Type Structural SFs Functional SFs Epitopes Sequence Alterations Total no. of SFs

    C Dengue virus 2 10 - - - 10

    C,preM Dengue virus 2 2 - - - 2

    preM Dengue virus 2 6 - - - 6

    preM,M Dengue virus 2 1 - - - 1

    preM,E Dengue virus 2 1 - - - 1

    M Dengue virus 2 1 - - - 1

    M,E Dengue virus 2 1 - - - 1

    E Dengue virus 2 54 1 3 - 58

    E,NS1 Dengue virus 2 1 - - - 1

    E,NS1,NS2A Dengue virus 2 1 - - - 1

    NS1 Dengue virus 2 3 - 26 - 29

    NS1,NS2A Dengue virus 2 1 - - - 1

    NS2A Dengue virus 2 5 - - - 5

    NS2A,NS2B Dengue virus 2 2 - - - 2

    NS2B Dengue virus 2 2 - - - 2

    NS2B,NS3 Dengue virus 2 2 - - - 2

    NS3 Dengue virus 2 7 8 - 2 17

    NS3,NS4A Dengue virus 2 2 - - - 2

    NS4A Dengue virus 2 2 - - - 2

    NS4A,2k Dengue virus 2 1 - - - 1

    2k Dengue virus 2 2 - - - 2

    2k,NS4B Dengue virus 2 1 - - - 1

    NS4B Dengue virus 2 9 - - - 9

    NS4B,NS5 Dengue virus 2 2 - - - 2

    NS5 Dengue virus 2 24 4 - - 28

    Top

    Home Sequence Feature Variant Types

    DengueSEARCH DATA ANALYZE & VISUALIZE WORKBENCH VIRUS FAMILIES HOME

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    VT-1! !F E I M D L E K!VT-2! !F E I T D L E K!VT-3! !F E I M D L E R!VT-4! !F E M M D L E K!VT-5! !F E I T D S E K!

    SF 70!

    PDB:1OK8!

    Dengue_Virus_2_experimentally-determined-epitope_328(10)

    Dengue_Virus_2_Beta-strand_617(8)

    Loading Virus Pathogen Database and Analysis Resource (ViPR)...

    Cite ViPR Tutorials Report a Bug Request Web Training Contact Us Release Date: May 27, 2011

    This project is funded by the National Institute of Allergy and Infectious Diseases (NIH / DHHS) under Contract No. HHSN272200900041C and is a collaboration between NorthropGrumman Health IT, University of Texas Southwestern Medical Center and Vecna Technologies. Virus images courtesy of CDC Public Health Image Library, Wellcome Images, U.S.Department of Veterans Affairs , Science of the Invisible and ViralZone, Swiss Institute of Bioinformatics.

    Protein Name EType 2Sequence Feature Name Dengue_Virus_2_Beta-strand_617(8)Sequence Feature Id Dengue_Virus_2_polyprotein_SF70Position 617-624Comment -N/A-

    VT-1 Strain (reference strain) S1 vaccine / M19197Sequence Feature Definition Strain S1 vaccineVariant Type in Sequence Feature Definition Strain VT-1Source Position 617-624

    SourceSequenceAccession

    M19197

    ProteinStructure

    1L9K,1OAN,1OK8,1OKE,1P58,1R6A,1R6R,1TG8,1TGE,1THD,2B6B,2BHR,2BMF,2FOM,2P1D,2P3L,2P3O,2P3Q,2P40,2P41

    SourcePublication

    Uniprot:P12823

    EvidenceCodes

    IEA

    Excel Download MSA Download View Phylogenetic Tree Find a VT(s)

    Search

    Reset

    Fill wildcards

    Strain Count

    VARIANT TYPES

    Edit specific positions in this VT-1 sequence with IUPAC symbols or use "?" as a wild-card. If necessary, use the horizontal scroll bar to access the entire SF.Click Search to find VT(s) conforming to the edited sequence. Click Reset to restore this panel to the default VT-1 sequence.

    Enter Sequence Variation to Find

    617

    F

    618

    E

    619

    I

    620

    M

    621

    D

    622

    L

    623

    E

    624

    K

    Variant Type

    643 VT-1270 VT-2

    7 VT-31 VT-41 VT-5

    Sequence Variation

    617 618 619 620 621 622 623 624

    F E I M D L E K- - - T - - - -- - - - - - - R- - M - - - - -- - - T - S - -

    Total Variations

    01112

    "?" : A question mark indicates the sequence is unknown. "-" : Indicates the same letter as in the VT-1 sequence.

    Sequence Feature Details Home Sequence Feature Variant Types Sequence Features Sequence Feature Details (Dengue_Virus_2_Beta-strand_617(8))

    DengueSEARCH DATA ANALYZE & VISUALIZE WORKBENCH VIRUS FAMILIES HOME

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    Feature Identifier Sequence Feature NameVariantTypes Category

    AminoAcid

    PositionSource/Reference Comments

    Dengue_Virus_2_polyprotein_SF29 Dengue_Virus_2_Beta-strand_291(3) 1 structural 291-293

    UniProt: P12823 -N/A-

    Dengue_Virus_2_polyprotein_SF30 Dengue_Virus_2_Beta-strand_295(12)

    1 structural 295-306

    UniProt: P12823 -N/A-

    Dengue_Virus_2_polyprotein_SF31 Dengue_Virus_2_Beta-strand_311(5) 1 structural 311-315

    UniProt: P12823 -N/A-

    Dengue_Virus_2_polyprotein_SF32 Dengue_Virus_2_Beta-strand_320(13)

    10 structural 320-332

    UniProt: P12823 -N/A-

    Dengue_Virus_2_polyprotein_SF33 Dengue_Virus_2_Beta-strand_334(19)

    13 structural 334-352

    UniProt: P12823 -N/A-

    Dengue_Virus_2_polyprotein_SF38 Dengue_Virus_2_Beta-strand_370(10)

    6 structural 370-379

    UniProt: P12823 -N/A-

    Dengue_Virus_2_polyprotein_SF41 Dengue_Virus_2_Beta-strand_389(21)

    16 structural 389-409

    UniProt: P12823 -N/A-

    Dengue_Virus_2_polyprotein_SF43 Dengue_Virus_2_Beta-strand_415(10)

    5 structural 415-424

    UniProt: P12823 -N/A-

    Dengue_Virus_2_polyprotein_SF46 Dengue_Virus_2_Beta-strand_440(5) 7 structural 440-444

    UniProt: P12823 -N/A-

    Dengue_Virus_2_polyprotein_SF47 Dengue_Virus_2_Beta-strand_450(6) 11 structural 450-455

    UniProt: P12823 -N/A-

    Dengue_Virus_2_polyprotein_SF49 Dengue_Virus_2_Beta-strand_459(9) 6 structural 459-467

    UniProt: P12823 -N/A-

    Dengue_Virus_2_polyprotein_SF52 Dengue_Virus_2_Beta-strand_476(6) 3 structural 476-481

    UniProt: P12823 -N/A-

    Dengue_Virus_2_polyprotein_SF53 Dengue_Virus_2_Beta-strand_484(6) 2 structural 484-489

    UniProt: P12823 -N/A-

    Dengue_Virus_2_polyprotein_SF55 Dengue_Virus_2_Beta-strand_500(3) 2 structural 500-502

    UniProt: P12823 -N/A-

    Dengue_Virus_2_polyprotein_SF57 Dengue_Virus_2_Beta-strand_518(3) 1 structural 518-520

    UniProt: P12823 -N/A-

    Dengue_Virus_2_polyprotein_SF58 Dengue_Virus_2_Beta-strand_530(3) 4 structural 530-532

    UniProt: P12823 -N/A-

    Dengue_Virus_2_polyprotein_SF61 Dengue_Virus_2_Beta-strand_547(4) 4 structural 547-550

    UniProt: P12823 -N/A-

    Dengue_Virus_2_polyprotein_SF62 Dengue_Virus_2_Beta-strand_552(8) 7 structural 552-559

    UniProt: P12823 -N/A-

    Dengue_Virus_2_polyprotein_SF63 Dengue_Virus_2_Beta-strand_562(10)

    5 structural 562-571

    UniProt: P12823 -N/A-

    Dengue_Virus_2_polyprotein_SF66 Dengue_Virus_2_Beta-strand_586(9) 4 structural 586-594

    UniProt: P12823 -N/A-

    Dengue_Virus_2_polyprotein_SF67 Dengue_Virus_2_Beta-strand_600(7) 9 structural 600-606

    UniProt: P12823 -N/A-

    Dengue_Virus_2_polyprotein_SF68 Dengue_Virus_2_Beta-strand_608(3) 5 structural 608-610

    UniProt: P12823 -N/A-

    Dengue_Virus_2_polyprotein_SF69 Dengue_Virus_2_Beta-strand_612(3) 3 structural 612-614

    UniProt: P12823 -N/A-

    Dengue_Virus_2_polyprotein_SF70 Dengue_Virus_2_Beta-strand_617(8) 5 structural 617-624

    UniProt: P12823 -N/A-

    Dengue_Virus_2_polyprotein_SF71 Dengue_Virus_2_Beta-strand_631(3) 2 structural 631- UniProt: P12823 -N/A-

    Sequence Features (beta) Sequence features (SF) for each ViPR virus protein are obtained from published literature and other database sources and defined based on their functional properties,structural properties or sequence alterations. Evidence codes are assigned for each sequence feature to describe the source from which it was obtained (e.g.: ‘EXP’ forPubmed ID or IEDB ID which have experimental evidence, ‘IEA’ for UniProt ID which is inferred from electronic annotation, etc.). The extent of sequence variation for each SF isdescribed as ‘Variant Types’ (VT) by computing the location of each SF in the context of a multiple sequence alignment to a reference strain. The reference strain has beenselected by the IRD team based on criteria regarding various aspects of strain characterization (please see result page for details). While VT-1 always represent the referencestrain, at the time of addition of SF to the database, the order of all other VTs is determined based on the number of strains that make up the variant types.

    Home Sequence Feature Variant Types Sequence Features

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    Cite ViPR Tutorials Report a Bug Request Web Training Contact Us Release Date: Jun 20, 2011

    This project is funded by the National Institute of Allergy and Infectious Diseases (NIH / DHHS) under Contract No. HHSN272200900041C and is a collaboration between NorthropGrumman Health IT, University of Texas Southwestern Medical Center and Vecna Technologies. Virus images courtesy of CDC Public Health Image Library, Wellcome Images, U.S.Department of Veterans Affairs , Science of the Invisible and ViralZone, Swiss Institute of Bioinformatics.

    Number of Sequences 922Sequence Label Strain Name

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    SEQUENCE INFORMATION

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    Sequence 56 ID: 1421_DF_07/16/2002 Residue: GLY (328)

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    Home My Workbench Working... Align Sequ... Results Visualize Aligned Sequences Results

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    VIPR_ALG2_225590497_937_2421|DKD811|Dengue/1-495VIPR_ALG2_132271147_937_2421|P8-1407|Dengue/1-495VIPR_ALG2_263612313_893_2377|DENV-2/BF/BID-V3502/1986|Dengue/1-495VIPR_ALG2_157956544_937_2421|DS09-280106|Dengue/1-495VIPR_ALG2_13926153_937_2421|FJ11/99|Dengue/1-495VIPR_ALG4_300828764_937_2421|DENV-2/ID/1070DN/1976|Dengue/1-495VIPR_ALG2_109288089_914_2398|2559-DHF-10/23/2002|Dengue/1-495VIPR_ALG2_164654849_937_2421|ZH1340|Dengue/1-495VIPR_ALG2_109288073_914_2398|1183-DF-06/17/2002|Dengue/1-495VIPR_ALG2_117622274_937_2421|ZS01/01|Dengue/1-495VIPR_ALG2_255031179_937_2421|D2MY00-22563|Dengue/1-495VIPR_ALG2_158602420_937_2421|1349|Dengue/1-495VIPR_ALG4_300828768_937_2421|DENV-2/ID/1127DN/1976|Dengue/1-495VIPR_ALG4_300828762_937_2421|DENV-2/ID/1017DN/1976|Dengue/1-495VIPR_ALG4_300828766_937_2421|DENV-2/ID/1172DN/1976|Dengue/1-495VIPR_ALG4_300828760_937_2421|DENV-2/ID/1016DN/1975|Dengue/1-495VIPR_ALG2_239840468_904_2388|DENV-2/LK/BID-V2422/2004|Dengue/1-495VIPR_ALG2_239840466_905_2389|DENV-2/LK/BID-V2421/2003|Dengue/1-495VIPR_ALG2_187479898_937_2421|GWL18/1-495VIPR_ALG2_228539211_915_2399|DENV-2/LK/BID-V2416/1996|Dengue/1-495VIPR_ALG2_228541895_907_2391|DENV-2/IN/BID-V2961/2006|Dengue/1-495VIPR_ALG2_51850375_937_2421|98900663/1-495VIPR_ALG2_51850377_937_2421|98900665/1-495VIPR_ALG2_51850379_937_2421|98900666/1-495VIPR_ALG2_109288069_914_2398|1018-DF-12/03/2001|Dengue/1-495VIPR_ALG2_109288063_914_2398|904-DHF-10/31/2001|Dengue/1-495VIPR_ALG2_56698827_937_2421|Taiwan-1008DHF|Dengue/1-495VIPR_ALG2_109288067_914_2398|950-DF-11/12/2001|Dengue/1-495VIPR_ALG2_109288065_914_2398|915-DF-11/03/2001|Dengue/1-495VIPR_ALG2_109288071_914_2398|1024-DHF-12/07/2001|Dengue/1-495VIPR_ALG2_289187581_841_2325|SGEHI(D2)0099Y07|Dengue/1-495VIPR_ALG2_158851624_937_2421|D2/SG/05K3295DK1/2005|Dengue/1-495VIPR_ALG2_14585843_937_2421|TSV01|Dengue/1-495VIPR_ALG2_169144130_915_2399|DENV-2/VN/BID-V735/2006|Dengue/1-495VIPR_ALG2_255031177_937_2421|D2MY97-10340|Dengue/1-495VIPR_ALG2_109288095_914_2398|2784-DF-11/18/2002|Dengue/1-495VIPR_ALG2_158851630_937_2421|D2/SG/05K4155DK1/2005|Dengue/1-495VIPR_ALG2_109288075_914_2398|1222-DF-06/24/2002|Dengue/1-495VIPR_ALG2_109288087_914_2398|2208-DHF-09/13/2002|Dengue/1-495VIPR_ALG2_109288083_914_2398|1949-DF-08/19/2002|Dengue/1-495VIPR_ALG2_145413589_937_2421|TB16i|Dengue/1-495VIPR_ALG2_255031185_937_2421|D2MY04-33054|Dengue/1-495VIPR_ALG2_109288085_914_2398|2191-DF-09/12/2002|Dengue/1-495VIPR_ALG2_157956542_937_2421|DS04-221205|Dengue/1-495VIPR_ALG2_109288079_914_2398|1464-DHF-07/20/2002|Dengue/1-495VIPR_ALG2_169144066_915_2399|DENV-2/VN/BID-V703/2006|Dengue/1-495VIPR_ALG2_109288091_914_2398|2587-DF-10/26/2002|Dengue/1-495VIPR_ALG2_109288093_914_2398|2659-DHF-11/01/2002|Dengue/1-495VIPR_ALG2_158851626_937_2421|D2/SG/05K3330DK1/2005|Dengue/1-495VIPR_ALG2_109288081_914_2398|1945-DHF-08/18/2002|Dengue/1-495VIPR_ALG2_255031183_937_2421|D2MY04-32883|Dengue/1-495VIPR_ALG2_158851628_937_2421|D2/SG/05K4137DK1/2005|Dengue/1-495VIPR_ALG2_145413587_937_2421|BA05i|Dengue/1-495VIPR_ALG2_255031181_937_2421|D2MY04-32618|Dengue/1-495VIPR_ALG2_157956540_937_2421|DS31-291005|Dengue/1-495VIPR_ALG2_109288077_914_2398|1421-DF-07/16/2002|Dengue/1-495VIPR_ALG2_289187583_841_2325|SGEHI(D2)1158Y08|Dengue/1-495VIPR_ALG2_300675531_915_2399|DENV-2/GU/BID-V2950/2001|Dengue/1-495VIPR_ALG4_300828772_937_2421|DENV-2/ID/1046DN/1976|Dengue/1-495VIPR_ALG4_300828774_937_2421|DENV-2/SG/07K3608DK1/2008|Dengue/1-495VIPR_ALG4_300828770_937_2421|DENV-2/ID/1023DN/1975|Dengue/1-495VIPR_ALG4_300828776_937_2421|DENV-2/SG/07K3598DK2/2007|Dengue/1-495VIPR_ALG4_300828778_937_2421|DENV-2/SG/07K3588DK1/2007|Dengue/1-495VIPR_ALG2_9280545_937_2421|FJ-10|Dengue/1-495VIPR_ALG2_201071182_921_2405|CSF63|Dengue/1-495VIPR_ALG2_294610357_937_2421|UNKNOWN-AB543624|Dengue/1-495VIPR_ALG2_4337013_937_2421|China/1-495VIPR_V_323655_937_2421|S1/1-495VIPR_ALG2_259498361_907_2391|DENV-2/MX/BID-V3713/2007|Dengue/1-495VIPR_ALG2_204305601_906_2390|DENV-2/CO/BID-V1597/2005|Dengue/1-495VIPR_ALG2_228541402_900_2384|DENV-2/MX/BID-V2953/2002|Dengue/1-495VIPR_ALG2_228542140_915_2399|DENV-2/KN/BID-V2951/2001|Dengue/1-495VIPR_ALG2_225691016_914_2398|DENV-2/NI/BID-V2664/2000|Dengue/1-495VIPR_ALG2_180165175_915_2399|DENV-2/NI/BID-V1202/2007|Dengue/1-495VIPR_ALG2_224383594_915_2399|DENV-2/NI/BID-V1764/2007|Dengue/1-495VIPR_ALG2_197310736_915_2399|DENV-2/CO/BID-V1595/2005|Dengue/1-495VIPR_ALG2_197310734_915_2399|DENV-2/CO/BID-V1594/2005|Dengue/1-495VIPR_ALG2_225690906_915_2399|DENV-2/NI/BID-V2353/2008|Dengue/1-495VIPR_ALG2_169143996_915_2399|DENV-2/VE/BID-V1104/2007|Dengue/1-495VIPR_ALG2_221070466_915_2399|DENV-2/VE/BID-V2262/2006|Dengue/1-495VIPR_ALG2_169144000_915_2399|DENV-2/VE/BID-V1107/2007|Dengue/1-495VIPR_ALG2_221070277_915_2399|DENV-2/VE/BID-V2159/2005|Dengue/1-495VIPR_ALG2_225691056_937_2421|DENV-2/VE/BID-V2424/2004|Dengue/1-495VIPR_ALG2_221070437_915_2399|DENV-2/VE/BID-V2246/2005|Dengue/1-495VIPR_ALG2_259496309_915_2399|DENV-2/VE/BID-V1144/2007|Dengue/1-495VIPR_ALG2_225691042_915_2399|DENV-2/VE/BID-V2470/2007|Dengue/1-495VIPR_ALG2_169144032_915_2399|DENV-2/NI/BID-V1210/2007|Dengue/1-495VIPR_ALG2_228551496_915_2399|DENV-2/NI/BID-V1302/2007|Dengue/1-495VIPR_ALG2_300675517_915_2399|DENV-2/NI/BID-V4156/2007|Dengue/1-495VIPR_ALG4_316983415_947_2431|DENV-2/NI/BID-V3136/2007|Dengue/1-495VIPR_ALG2_225691014_914_2398|DENV-2/NI/BID-V2663/2000|Dengue/1-495VIPR_ALG2_225691008_897_2381|DENV-2/NI/BID-V2346/2000|Dengue/1-495VIPR_ALG2_228543206_914_2398|DENV-2/NI/BID-V2923/2000|Dengue/1-495VIPR_ALG2_259498363_909_2393|DENV-2/MX/BID-V3714/2007|Dengue/1-495VIPR_ALG2_281324859_914_2398|DENV-2/MX/BID-V3715/2007|Dengue/1-495VIPR_ALG2_281324861_904_2388|DENV-2/MX/BID-V3717/2007|Dengue/1-495VIPR_ALG2_225691046_904_2388|DENV-2/VE/BID-V2477/2008|Dengue/1-495VIPR_ALG2_259500415_915_2399|DENV-2/CO/BID-V3372/2005|Dengue/1-495VIPR_ALG2_169143994_915_2399|DENV-2/VE/BID-V1095/2007|Dengue/1-495VIPR_ALG2_228542424_915_2399|DENV-2/VE/BID-V2944/2005|Dengue/1-495VIPR_ALG2_259500411_915_2399|DENV-2/CO/BID-V3370/2004|Dengue/1-495VIPR_ALG2_225691044_915_2399|DENV-2/VE/BID-V2476/2008|Dengue/1-495VIPR_ALG2_221070275_905_2389|DENV-2/VE/BID-V2158/2005|Dengue/1-495VIPR_ALG2_197310670_904_2388|DENV-2/CO/BID-V1601/2005|Dengue/1-495VIPR_ALG2_169144162_914_2398|DENV-2/NI/BID-V575/2006|Dengue/1-495VIPR_ALG2_169144002_900_2384|DENV-2/VE/BID-V1111/2007|Dengue/1-495VIPR_ALG2_197310738_915_2399|DENV-2/CO/BID-V1596/2005|Dengue/1-495VIPR_ALG2_169143998_905_2389|DENV-2/VE/BID-V1105/2007|Dengue/1-495VIPR_ALG2_225691048_900_2384|DENV-2/VE/BID-V2478/2008|Dengue/1-495VIPR_ALG2_204305644_915_2399|DENV-2/NI/BID-V1721/2008|Dengue/1-495VIPR_ALG4_316983425_927_2411|DENV-2/NI/BID-V3223/2008|Dengue/1-495VIPR_ALG2_259496319_915_2399|DENV-2/NI/BID-V2428/2007|Dengue/1-495VIPR_ALG2_209976834_914_2398|DENV-2/NI/BID-V1233/2007|Dengue/1-495VIPR_ALG2_209976576_914_2398|DENV-2/NI/BID-V1298/2007|Dengue/1-495VIPR_ALG2_170665968_914_2398|DENV-2/NI/BID-V1217/2007|Dengue/1-495VIPR_ALG4_316983487_932_2416|DENV-2/NI/BID-V4914/2009|Dengue/1-495VIPR_ALG4_316983417_936_2420|DENV-2/NI/BID-V3149/2007|Dengue/1-495VIPR_ALG2_221070494_900_2384|DENV-2/NI/BID-V2354/2007|Dengue/1-495VIPR_ALG2_169144034_915_2399|DENV-2/NI/BID-V1229/2007|Dengue/1-495VIPR_ALG2_169144042_915_2399|DENV-2/NI/BID-V1236/2007|Dengue/1-495VIPR_ALG2_228542782_897_2381|DENV-2/NI/BID-V2569/2007|Dengue/1-495VIPR_ALG2_169144038_915_2399|DENV-2/NI/BID-V1234/2007|Dengue/1-495VIPR_ALG2_239840396_915_2399|DENV-2/NI/BID-V3002/2007|Dengue/1-495VIPR_ALG2_225691012_915_2399|DENV-2/NI/BID-V2660/2000|Dengue/1-495VIPR_ALG2_224383670_904_2388|DENV-2/NI/BID-V2363/2000|Dengue/1-495VIPR_ALG2_225691010_914_2398|DENV-2/NI/BID-V2659/2000|Dengue/1-495VIPR_ALG2_225691018_914_2398|DENV-2/NI/BID-V2665/2000|Dengue/1-495VIPR_ALG2_169144060_914_2398|DENV-2/NI/BID-V658/2005|Dengue/1-495VIPR_ALG2_180164515_914_2398|DENV-2/NI/BID-V660/2005|Dengue/1-495VIPR_ALG2_169144058_914_2398|DENV-2/NI/BID-V654/2005|Dengue/1-495VIPR_ALG2_169144302_914_2398|DENV-2/NI/BID-V539/2005|Dengue/1-495VIPR_ALG2_169144052_914_2398|DENV-2/NI/BID-V631/2006|Dengue/1-495VIPR_ALG2_169143980_914_2398|DENV-2/NI/BID-V609/2005|Dengue/1-495VIPR_ALG2_169143986_914_2398|DENV-2/NI/BID-V623/2005|Dengue/1-495VIPR_ALG2_228541307_914_2398|DENV-2/NI/BID-V648/2005|Dengue/1-495VIPR_ALG2_169144284_914_2398|DENV-2/NI/BID-V514/2005|Dengue/1-495VIPR_ALG2_225690978_914_2398|DENV-2/NI/BID-V634/2005|Dengue/1-495VIPR_ALG2_169144056_914_2398|DENV-2/NI/BID-V640/2005|Dengue/1-495VIPR_ALG2_169144050_914_2398|DENV-2/NI/BID-V620/2005|Dengue/1-495VIPR_ALG2_169144326_914_2398|DENV-2/NI/BID-V527/2005|Dengue/1-495VIPR_ALG2_228541433_914_2398|DENV-2/MX/BID-V2964/2008|Dengue/1-495VIPR_ALG2_180165116_915_2399|DENV-2/NI/BID-V1195/2007|Dengue/1-495VIPR_ALG2_224383662_931_2415|DENV-2/NI/BID-V1755/2007|Dengue/1-495VIPR_ALG2_228542661_914_2398|DENV-2/NI/BID-V543/2005|Dengue/1-495VIPR_ALG2_170665974_915_2399|DENV-2/NI/BID-V1228/2007|Dengue/1-495VIPR_ALG2_225691020_914_2398|DENV-2/NI/BID-V2331/2006|Dengue/1-495VIPR_ALG2_169144030_915_2399|DENV-2/NI/BID-V1198/2007|Dengue/1-495VIPR_ALG2_169144172_908_2392|DENV-2/NI/BID-V581/2006|Dengue/1-495VIPR_ALG2_221070500_915_2399|DENV-2/NI/BID-V2358/2007|Dengue/1-495VIPR_ALG2_170665964_915_2399|DENV-2/NI/BID-V1208/2007|Dengue/1-495VIPR_ALG2_56809010_937_2421|Cuba165/97|Dengue/1-495VIPR_ALG2_169144044_914_2398|DENV-2/NI/BID-V1297/2007|Dengue/1-495VIPR_ALG2_169144158_915_2399|DENV-2/NI/BID-V573/2006|Dengue/1-495VIPR_ALG2_228542163_914_2398|DENV-2/BZ/BID-V2952/2002|Dengue/1-495VIPR_ALG2_169144316_914_2398|DENV-2/NI/BID-V692/2005|Dengue/1-495VIPR_ALG2_209976512_919_2403|DENV-2/NI/BID-V528/2005|Dengue/1-495VIPR_ALG2_169144146_914_2398|DENV-2/NI/BID-V529/2005|Dengue/1-495VIPR_ALG2_180165609_915_2399|DENV-2/NI/BID-V1225/2007|Dengue/1-495VIPR_ALG2_239840442_914_2398|DENV-2/NI/BID-V3076/2001|Dengue/1-495VIPR_ALG2_169144322_914_2398|DENV-2/NI/BID-V695/2005|Dengue/1-495VIPR_ALG2_259500409_900_2384|DENV-2/CO/BID-V3369/1999|Dengue/1-495VIPR_ALG2_170665954_910_2394|DENV-2/NI/BI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32_897_2381|DENV-2/US/BID-V1169/1987|Dengue/1-495VIPR_ALG2_259496227_915_2399|DENV-2/VE/BID-V3365/1991|Dengue/1-495VIPR_ALG2_259496179_915_2399|DENV-2/VE/BID-V3496/1990|Dengue/1-495VIPR_ALG2_169144274_914_2398|DENV-2/US/BID-V687/1989|Dengue/1-495VIPR_ALG2_169143922_915_2399|DENV-2/US/BID-V1164/1986|Dengue/1-495VIPR_ALG2_169143942_915_2399|DENV-2/US/BID-V1175/1988|Dengue/1-495VIPR_ALG4_300828860_937_2421|DENV-2/PR/3DN/1994|Dengue/1-495VIPR_ALG4_300828838_937_2421|DENV-2/PR/21DN/1994|Dengue/1-495VIPR_ALG4_300828840_937_2421|DENV-2/PR/16DN/1995|Dengue/1-495VIPR_ALG4_300828818_936_2420|DENV-2/PR/46DN/1994|Dengue/1-495VIPR_ALG4_300828826_936_2420|DENV-2/PR/29DN/1994|Dengue/1-495VIPR_ALG4_300828820_936_2420|DENV-2/PR/10DN/1994|Dengue/1-495VIPR_ALG4_300828828_937_2421|DENV-2/PR/6DN/1994|Dengue/1-495VIPR_ALG4_300828858_937_2421|DENV-2/PR/19DN/1994|Dengue/1-495VIPR_ALG4_300828852_937_2421|DENV-2/PR/4DN/1994|Dengue/1-495VIPR_ALG4_300828868_937_2421|DENV-2/PR/28DN/1994|Dengue/1-495VIPR_ALG4_300828836_937_2421|DENV-2/PR/44DN/1994|Dengue/1-495VIPR_ALG4_300828822_936_2420|DENV-2/PR/30DN/1994|Dengue/1-495VIPR_ALG4_300828850_937_2421|DENV-2/PR/34DN/1994|Dengue/1-495VIPR_ALG4_300828866_937_2421|DENV-2/PR/6780DN/1994|Dengue/1-495VIPR_ALG4_300828864_937_2421|DENV-2/PR/48DN/1994|Dengue/1-495VIPR_ALG4_300828816_936_2420|DENV-2/PR/42DN/1994|Dengue/1-495VIPR_ALG4_300828832_937_2421|DENV-2/PR/45DN/1994|Dengue/1-495VIPR_ALG4_300828870_937_2421|DENV-2/PR/11DN/1994|Dengue/1-495VIPR_ALG4_300828872_937_2421|DENV-2/PR/13DN/1994|Dengue/1-495VIPR_ALG4_300828862_937_2421|DENV-2/PR/1DN/1994|Dengue/1-495VIPR_ALG4_300828844_937_2421|DENV-2/PR/9DN/1994|Dengue/1-495VIPR_ALG4_300828846_937_2421|DENV-2/PR/17DN/1995|Dengue/1-495VIPR_ALG4_300828854_937_2421|DENV-2/PR/5DN/1994|Dengue/1-495VIPR_ALG4_300828856_937_2421|DENV-2/PR/22DN/1994|Dengue/1-495VIPR_ALG4_300828834_937_2421|DENV-2/PR/14DN/1994|Dengue/1-495VIPR_ALG4_300828848_937_2421|DENV-2/PR/47DN/1994|Dengue/1-495VIPR_ALG4_319748454_841_2325|BR64905/RJ/99|Dengue/1-495VIPR_ALG2_187610191_915_2399|DENV-2/US/BID-V1464/2000|Dengue/1-495VIPR_ALG2_190161849_915_2399|DENV-2/US/BID-V1442/2005|Dengue/1-495VIPR_ALG2_187610221_915_2399|DENV-2/US/BID-V1492/2003|Dengue/1-495VIPR_ALG2_187610213_915_2399|DENV-2/US/BID-V1484/2003|Dengue/1-495VIPR_ALG2_180164917_915_2399|DENV-2/US/BID-V1411/2007|Dengue/1-495VIPR_ALG2_187610171_915_2399|DENV-2/US/BID-V1436/2004|Dengue/1-495VIPR_ALG2_169144240_915_2399|DENV-2/US/BID-V596/1998|Dengue/1-495VIPR_ALG2_170665992_915_2399|DENV-2/US/BID-V1392/1998|Dengue/1-495VIPR_ALG2_169143892_915_2399|DENV-2/US/BID-V1041/2006|Dengue/1-495VIPR_ALG2_169144262_915_2399|DENV-2/US/BID-V681/1998|Dengue/1-495VIPR_ALG2_187610189_915_2399|DENV-2/US/BID-V1463/2000|Dengue/1-495VIPR_ALG2_187610167_915_2399|DENV-2/US/BID-V1434/2004|Dengue/1-495VIPR_ALG2_187609999_915_2399|DENV-2/US/BID-V1388/1998|Dengue/1-495VIPR_ALG2_169635123_915_2399|DENV-2/US/BID-V1085/1994|Dengue/1-495VIPR_ALG2_169143880_915_2399|DENV-2/US/BID-V1034/1998|Dengue/1-495VIPR_ALG2_169144224_915_2399|DENV-2/US/BID-V587/2006|Dengue/1-495VIPR_ALG2_187610215_915_2399|DENV-2/US/BID-V1486/2003|Dengue/1-495VIPR_ALG2_187610227_915_2399|DENV-2/US/BID-V1495/2004|Dengue/1-495VIPR_ALG2_169144232_915_2399|DENV-2/US/BID-V592/2002|Dengue/1-495VIPR_ALG2_169143884_916_2400|DENV-2/US/BID-V1036/2006|Dengue/1-495VIPR_ALG2_169635109_915_2399|DENV-2/US/BID-V1046/2004|Dengue/1-495VIPR_ALG2_170666004_915_2399|DENV-2/US/BID-V1399/1997|Dengue/1-495VIPR_ALG2_187610201_911_2395|DENV-2/US/BID-V1470/2001|Dengue/1-495VIPR_ALG2_187610169_915_2399|DENV-2/US/BID-V1435/2004|Dengue/1-495VIPR_ALG2_170666010_915_2399|DENV-2/US/BID-V1409/1997|Dengue/1-495VIPR_ALG2_180164888_915_2399|DENV-2/US/BID-V1410/2007|Dengue/1-495VIPR_ALG2_169144264_915_2399|DENV-2/US/BID-V682/1994|Dengue/1-495VIPR_ALG2_169143874_915_2399|DENV-2/US/BID-V1031/2006|Dengue/1-495VIPR_ALG2_187610084_915_2399|DENV-2/US/BID-V1432/2004|Dengue/1-495VIPR_ALG2_170665998_915_2399|DENV-2/US/BID-V1396/1997|Dengue/1-495VIPR_ALG2_169144242_915_2399|DENV-2/US/BID-V597/1998|Dengue/1-495VIPR_ALG2_169144252_915_2399|DENV-2/US/BID-V676/1998|Dengue/1-495VIPR_ALG2_169144234_915_2399|DENV-2/US/BID-V593/2005|Dengue/1-495VIPR_ALG2_169144246_905_2389|DENV-2/US/BID-V599/1999|Dengue/1-495VIPR_ALG2_169143972_915_2399|DENV-2/US/BID-V854/2001|Dengue/1-495VIPR_ALG2_187610163_915_2399|DENV-2/US/BID-V1482/2003|Dengue/1-495VIPR_ALG2_187610195_915_2399|DENV-2/US/BID-V1467/2001|Dengue/1-495VIPR_ALG2_169143882_899_2383|DENV-2/US/BID-V1035/2006|Dengue/1-495VIPR_ALG2_187610082_915_2399|DENV-2/US/BID-V1431/2004|Dengue/1-495VIPR_ALG2_187610203_915_2399|DENV-2/US/BID-V1471/2001|Dengue/1-495VIPR_ALG2_169143900_915_2399|DENV-2/US/BID-V1048/1999|Dengue/1-495VIPR_ALG2_169144244_915_2399|DENV-2/US/BID-V598/1999|Dengue/1-495VIPR_ALG2_187610211_915_2399|DENV-2/US/BID-V1483/2003|Dengue/1-495VIPR_ALG2_187610225_915_2399|DENV-2/US/BID-V1494/2004|Dengue/1-495VIPR_ALG2_187610231_915_2399|DENV-2/US/BID-V1497/2005|Dengue/1-495VIPR_ALG2_190161823_915_2399|DENV-2/US/BID-V1440/2005|Dengue/1-495VIPR_ALG2_187610185_915_2399|DENV-2/US/BID-V1461/2000|Dengue/1-495VIPR_ALG2_170665976_901_2385|DENV-2/US/BID-V1055/1996|Dengue/1-495VIPR_ALG2_180164862_903_2387|DENV-2/US/BID-V1394/1998|Dengue/1-495VIPR_ALG2_180164946_915_2399|DENV-2/US/BID-V1412/2007|Dengue/1-495VIPR_ALG2_169635113_903_2387|DENV-2/US/BID-V1058/1994|Dengue/1-495VIPR_ALG2_169143888_915_2399|DENV-2/US/BID-V1039/2006|Dengue/1-495VIPR_ALG2_180164797_915_2399|DENV-2/US/BID-V1378/1996|Dengue/1-495VIPR_ALG2_169144236_915_2399|DENV-2/US/BID-V594/2006|Dengue/1-495VIPR_ALG2_170666000_915_2399|DENV-2/US/BID-V1397/1997|Dengue/1-495VIPR_ALG2_170665982_915_2399|DENV-2/US/BID-V1367/1995|Dengue/1-495VIPR_ALG2_187610229_915_2399|DENV-2/US/BID-V1496/2004|Dengue/1-495VIPR_ALG2_169144230_905_2389|DENV-2/US/BID-V591/2002|Dengue/1-495VIPR_ALG2_187610199_915_2399|DENV-2/US/BID-V1469/2001|Dengue/1-495VIPR_ALG2_169143916_915_2399|DENV-2/US/BID-V1084/1998|Dengue/1-495VIPR_ALG2_187610205_899_2383|DENV-2/US/BID-V1472/2001|Dengue/1-495VIPR_ALG4_300828808_937_2421|DENV-2/PR/35DN/1994|Dengue/1-495VIPR_ALG4_300828806_937_2421|DENV-2/PR/27DN/1994|Dengue/1-495VIPR_ALG4_300828802_937_2421|DENV-2/PR/24DN/1994|Dengue/1-495VIPR_ALG4_300828804_937_2421|DENV-2/PR/39DN/1994|Dengue/1-495VIPR_ALG4_300828784_938_2422|DENV-2/PR/2DN/1994|Dengue/1-495VIPR_ALG4_300828786_937_2421|DENV-2/PR/15DN/1994|Dengue/1-495VIPR_ALG4_300828798_937_2421|DENV-2/PR/38DN/1994|Dengue/1-495VIPR_ALG4_300828800_937_2421|DENV-2/PR/40DN/1994|Dengue/1-495VIPR_ALG4_300828792_937_2421|DENV-2/PR/23DN/1994|Dengue/1-495VIPR_ALG4_300828794_937_2421|DENV-2/PR/33DN/1994|Dengue/1-495VIPR_ALG4_300828796_937_2421|DENV-2/PR/26DN/1994|Dengue/1-495VIPR_ALG4_300828810_937_2421|DENV-2/PR/37DN/1994|Dengue/1-495VIPR_ALG4_300828790_937_2421|DENV-2/PR/8DN/1994|Dengue/1-495VIPR_ALG4_300828788_937_2421|DENV-2/PR/49DN/1994|Dengue/1-495VIPR_ALG2_224383620_915_2399|DENV-2/TH/BID-V2308/2001|Dengue/1-495VIPR_ALG2_221070481_915_2399|DENV-2/TH/BID-V2153/2001|Dengue/1-495VIPR_ALG2_6841590_937_2421|ThNH45/93|Dengue/1-495VIPR_ALG2_6841602_937_2421|ThNH73/93|Dengue/1-495VIPR_ALG2_77024335_937_2421|ThD2_0433_85|Dengue/1-495VIPR_ALG2_6841606_937_2421|ThNH81/93|Dengue/1-495VIPR_ALG2_77024337_937_2421|ThD2_0498_84|Dengue/1-495VIPR_ALG2_263614888_915_2399|DENV-2/IPC/BID-V4270/2008|Dengue/1-495VIPR_ALG2_221071266_915_2399|DENV-2/KH/BID-V2066/2007|Dengue/1-495VIPR_ALG2_190161817_915_2399|DENV-2/TH/BID-V1458/1994|Dengue/1-495VIPR_ALG2_4926936_926_2410|C0166|Dengue/1-495VIPR_ALG2_6841604_937_2421|ThNH76/93|Dengue/1-495VIPR_ALG2_4926928_926_2410|K0008|Dengue/1-495VIPR_ALG2_4926934_926_2410|C0390|Dengue/1-495VIPR_ALG2_224383618_915_2399|DENV-2/TH/BID-V2307/2001|Dengue/1-495VIPR_ALG2_6841596_937_2421|ThNH62/93|Dengue/1-495VIPR_ALG2_2909793_937_2421|ThNH-p12/93|Dengue/1-495VIPR_ALG2_221070486_915_2399|DENV-2/TH/BID-V2155/2001|Dengue/1-495VIPR_ALG2_224383558_915_2399|DENV-2/TH/BID-V2278/2001|Dengue/1-495VIPR_ALG2_224383614_956_2440|DENV-2/TH/BID-V2305/2001|Dengue/1-495VIPR_ALG2_2909797_937_2421|ThNH-p16/93|Dengue/1-495VIPR_ALG2_224383578_915_2399|DENV-2/TH/BID-V2289/2001|Dengue/1-495VIPR_ALG2_2909787_937_2421|ThNH-28/93|Dengue/1-495VIPR_ALG2_4926932_926_2410|C0371|Dengue/1-495VIPR_ALG2_259496183_915_2399|DENV-2/TH/BID-V3498/1994|Dengue/1-495VIPR_ALG2_6841586_937_2421|ThNH29/93|Dengue/1-495VIPR_ALG2_6841594_937_2421|ThNH54/93|Dengue/1-495VIPR_ALG2_221070483_915_2399|DENV-2/TH/BID-V2154/2001|Dengue/1-495VIPR_ALG2_77024329_937_2421|ThD2_0263_95|Dengue/1-495VIPR_ALG2_187610233_915_2399|DENV-2/TH/BID-V1498/1994|Dengue/1-495VIPR_ALG2_224383616_915_2399|DENV-2/TH/BID-V2306/2001|Dengue/1-495VIPR_ALG2_224383622_915_2399|DENV-2/TH/BID-V2309/2001|Dengue/1-495VIPR_ALG2_6841592_937_2421|ThNH55/93|Dengue/1-495VIPR_ALG2_2909789_937_2421|ThNH-52/93|Dengue/1-495VIPR_ALG2_77024327_937_2421|ThD2_0017_98|Dengue/1-495VIPR_ALG2_224383562_915_2399|DENV-2/TH/BID-V2280/2001|Dengue/1-495VIPR_ALG2_224383580_915_2399|DENV-2/TH/BID-V2290/2001|Dengue/1-495VIPR_ALG2_6841588_937_2421|ThNH36/93|Dengue/1-495VIPR_ALG2_2909795_937_2421|ThNH-p14/93|Dengue/1-495VIPR_ALG2_4926930_926_2410|K0010|Dengue/1-495VIPR_ALG2_4926938_926_2410|C0167|Dengue/1-495VIPR_ALG2_225690890_915_2399|DENV-2/TH/BID-V2291/2001|Dengue/1-495VIPR_ALG2_221070488_915_2399|DENV-2/TH/BID-V2156/2001|Dengue/1-495VIPR_ALG2_77024325_937_2421|ThD2_0055_99|Dengue/1-495VIPR_ALG2_259496189_915_2399|DENV-2/TH/BID-V3500/1996|Dengue/1-495VIPR_ALG2_2909785_937_2421|ThNH-7/93|Dengue/1-495VIPR_ALG2_224383582_915_2399|DENV-2/TH/BID-V2292/2001|Dengue/1-495VIPR_ALG2_2909791_937_2421|ThNH-p11/93|Dengue/1-495VIPR_ALG2_228542721_915_2399|DENV-2/TH/BID-V2617/1996|Dengue/1-495VIPR_ALG2_224383560_915_2399|DENV-2/TH/BID-V2279/2001|Dengue/1-495VIPR_ALG2_2909799_937_2421|ThNH-p36/93|Dengue/1-495VIPR_ALG2_6841600_937_2421|ThNH69/93|Dengue/1-495VIPR_ALG2_6841598_937_2421|ThNH63/93|Dengue/1-495VIPR_ALG2_259496187_915_2399|DENV-2/TH/BID-V3499/1996|Dengue/1-495VIPR_ALG2_77024333_937_2421|ThD2_0026_88|Dengue/1-495VIPR_ALG2_221071242_915_2399|DENV-2/KH/BID-V2040/2004|Dengue/1-495VIPR_ALG2_259496273_915_2399|DENV-2/KH/BID-V2047/2005|Dengue/1-495VIPR_ALG2_263614094_883_2367|DENV-2/IPC/BID-V3788/2007|Dengue/1-495VIPR_ALG2_221071248_916_2400|DENV-2/KH/BID-V2043/2005|Dengue/1-495VIPR_ALG2_225690888_915_2399|DENV-2/TH/BID-V2285/2001|Dengue/1-495VIPR_ALG2_259496271_915_2399|DENV-2/KH/BID-V2037/2003|Dengue/1-495VIPR_ALG2_224383570_915_2399|DENV-2/TH/BID-V2284/2001|Dengue/1-495VIPR_ALG2_221071240_915_2399|DENV-2/KH/BID-V2039/2003|Dengue/1-495VIPR_ALG2_259496185_915_2399|DENV-2/TH/BID-V3501/1995|Dengue/1-495VIPR_ALG2_259496303_905_2389|DENV-2/IPC/BID-V3924/2008|Dengue/1-495VIPR_ALG2_224383572_915_2399|DENV-2/TH/BID-V2286/2001|Dengue/1-495VIPR_ALG2_228542690_915_2399|DENV-2/TH/BID-V2616/1996|Dengue/1-495VIPR_ALG2_259496267_901_2385|DENV-2/KH/BID-V2028/2003|Dengue/1-495VIPR_ALG2_224383574_915_2399|DENV-2/TH/BID-V2287/2001|Dengue/1-495VIPR_ALG2_224383576_915_2399|DENV-2/TH/BID-V2288/2001|Dengue/1-495VIPR_ALG2_263614831_915_2399|DENV-2/IPC/BID-V4266/2008|Dengue/1-495VIPR_ALG2_259496289_915_2399|DENV-2/IPC/BID-V3791/2008|Dengue/1-495VIPR_ALG2_263614861_915_2399|DENV-2/IPC/BID-V4268/2008|Dengue/1-495VIPR_ALG2_169144334_915_2399|DENV-2/VN/BID-V752/2004|Dengue/1-495VIPR_ALG2_187610029_915_2399|DENV-2/VN/BID-V1511/2007|Dengue/1-495VIPR_ALG2_209976690_905_2389|DENV-2/VN/BID-V1857/2007|Dengue/1-495VIPR_ALG2_169144142_915_2399|DENV-2/VN/BID-V741/2006|Dengue/1-495VIPR_ALG2_259496277_912_2396|DENV-2/KH/BID-V2069/2008|Dengue/1-495VIPR_ALG2_209976700_915_2399|DENV-2/VN/BID-V1872/2007|Dengue/1-495VIPR_ALG2_209976770_915_2399|DENV-2/VN/BID-V1928/2008|Dengue/1-495VIPR_ALG2_169143688_915_2399|DENV-2/VN/BID-V1007/2006|Dengue/1-495VIPR_ALG2_169144358_915_2399|DENV-2/VN/BID-V764/2003|Dengue/1-495VIPR_ALG2_169144124_902_2386|DENV-2/VN/BID-V732/2006|Dengue/1-495VIPR_ALG2_169144138_915_2399|DENV-2/VN/BID-V739/2006|Dengue/1-495VIPR_ALG2_169144096_915_2399|DENV-2/VN/BID-V718/2006|Dengue/1-495VIPR_ALG2_169144080_915_2399|DENV-2/VN/BID-V710/2006|Dengue/1-495VIPR_ALG2_169144072_915_2399|DENV-2/VN/BID-V706/2006|Dengue/1-495VIPR_ALG2_221070246_903_2387|DENV-2/VN/BID-V1794/2007|Dengue/1-495VIPR_ALG2_209976566_915_2399|DENV-2/VN/BID-V1684/2007|Dengue/1-495VIPR_ALG2_224383568_915_2399|DENV-2/TH/BID-V2283/2001|Dengue/1-495VIPR_ALG2_209976828_915_2399|DENV-2/VN/BID-V1654/2007|Dengue/1-495VIPR_ALG2_187610025_915_2399|DENV-2/VN/BID-V1507/2007|Dengue/1-495VIPR_ALG2_206597902_915_2399|DENV-2/VN/BID-V1674/2007|Dengue/1-495VIPR_ALG2_169144084_915_2399|DENV-2/VN/BID-V712/2006|Dengue/1-495VIPR_ALG2_169144108_915_2399|DENV-2/VN/BID-V724/2006|Dengue/1-495VIPR_ALG2_169144070_915_2399|DENV-2/VN/BID-V705/2006|Dengue/1-495VIPR_ALG2_169143676_906_2390|DENV-2/VN/BID-V1000/2006|Dengue/1-495VIPR_ALG2_169144112_915_2399|DENV-2/VN/BID-V726/2006|Dengue/1-495VIPR_ALG2_201071168_925_2409|MD1619|Dengue/1-495VIPR_ALG2_187610239_915_2399|DENV-2/VN/BID-V1512/2007|Dengue/1-495VIPR_ALG2_187610033_915_2399|DENV-2/VN/BID-V1515/2007|Dengue/1-495VIPR_ALG2_209976642_915_2399|DENV-2/VN/BID-V1776/2007|Dengue/1-495VIPR_ALG2_197310837_915_2399|DENV-2/VN/BID-V1685/2007|Dengue/1-495VIPR_ALG2_169144100_915_2399|DENV-2/VN/BID-V720/2006|Dengue/1-495VIPR_ALG2_169144182_915_2399|DENV-2/VN/BID-V772/2007|Dengue/1-495VIPR_ALG2_209976682_915_2399|DENV-2/VN/BID-V1844/2008|Dengue/1-495VIPR_ALG2_209976656_905_2389|DENV-2/VN/BID-V1807/2007|Dengue/1-495VIPR_ALG2_201071246_919_2403|MD1618|Dengue/1-495VIPR_ALG2_197310825_915_2399|DENV-2/VN/BID-V1669/2007|Dengue/1-495VIPR_ALG2_224383564_915_2399|DENV-2/TH/BID-V2281/2001|Dengue/1-495VIPR_ALG2_201071238_924_2408|MD1279|Dengue/1-495VIPR_ALG2_169143726_915_2399|DENV-2/VN/BID-V925/2006|Dengue/1-495VIPR_ALG2_221071250_904_2388|DENV-2/KH/BID-V2044/2005|Dengue/1-495VIPR_ALG2_169144186_915_2399|DENV-2/VN/BID-V774/2007|Dengue/1-495VIPR_ALG2_169144120_898_2382|DENV-2/VN/BID-V730/2006|Dengue/1-495VIPR_ALG2_169144354_916_2400|DENV-2/VN/BID-V762/2003|Dengue/1-495VIPR_ALG2_224383584_915_2399|DENV-2/TH/BID-V2293/2001|Dengue/1-495VIPR_ALG2_169144098_910_2394|DENV-2/VN/BID-V719/2006|Dengue/1-495VIPR_ALG2_201071164_925_2409|MD1533|Dengue/1-495VIPR_ALG2_169144134_915_2399|DENV-2/VN/BID-V737/2006|Dengue/1-495VIPR_ALG2_228541846_915_2399|DENV-2/TH/BID-V2957/2003|Dengue/1-495VIPR_ALG2_224383602_915_2399|DENV-2/TH/BID-V2298/2001|Dengue/1-495VIPR_ALG2_169143736_915_2399|DENV-2/VN/BID-V930/2007|Dengue/1-495VIPR_ALG2_224383610_915_2399|DENV-2/TH/BID-V2303/2001|Dengue/1-495VIPR_ALG2_169144144_915_2399|DENV-2/VN/BID-V742/2007|Dengue/1-495VIPR_ALG2_169143678_915_2399|DENV-2/VN/BID-V1001/2006|Dengue/1-495VIPR_ALG2_169144192_915_2399|DENV-2/VN/BID-V777/2007|Dengue/1-495VIPR_ALG2_224383624_915_2399|DENV-2/TH/BID-V2310/2001|Dengue/1-495VIPR_ALG2_169144184_915_2399|DENV-2/VN/BID-V773/2007|Dengue/1-495VIPR_ALG2_187610237_915_2399|DENV-2/VN/BID-V1509/2007|Dengue/1-495VIPR_ALG2_169143712_915_2399|DENV-2/VN/BID-V917/2006|Dengue/1-495VIPR_ALG2_224383596_915_2399|DENV-2/TH/BID-V2294/2001|Dengue/1-495VIPR_ALG2_187610031_915_2399|DENV-2/VN/BID-V1513/2007|Dengue/1-495VIPR_ALG2_201071186_921_2405|DF401|Dengue/1-495VIPR_ALG2_225690894_915_2399|DENV-2/TH/BID-V2299/2001|Dengue/1-495VIPR_ALG2_201071220_921_2405|MD1272|Dengue/1-495VIPR_ALG2_169144078_897_2381|DENV-2/VN/BID-V709/2006|Dengue/1-495VIPR_ALG2_190161835_900_2384|DENV-2/VN/BID-V1514/2007|Dengue/1-495VIPR_ALG2_77024323_937_2421|ThD2_0078_01|Dengue/1-495VIPR_ALG2_228551494_900_2384|DENV-2/VN/BID-V1777/2007|Dengue/1-495VIPR_ALG2_209976686_915_2399|DENV-2/VN/BID-V1853/2007|Dengue/1-495VIPR_ALG2_169143720_915_2399|DENV-2/VN/BID-V921/2006|Dengue/1-495VIPR_ALG2_169143734_915_2399|DENV-2/VN/BID-V929/2007|Dengue/1-495VIPR_ALG2_224383604_915_2399|DENV-2/TH/BID-V2300/2001|Dengue/1-495VIPR_ALG2_201071176_927_2411|DF907|Dengue/1-495VIPR_ALG2_169144128_897_2381|DENV-2/VN/BID-V734/2006|Dengue/1-495VIPR_ALG2_224383626_915_2399|DENV-2/TH/BID-V2311/2001|Dengue/1-495VIPR_ALG2_225690892_915_2399|DENV-2/TH/BID-V2297/2001|Dengue/1-495VIPR_ALG2_197310843_915_2399|DENV-2/VN/BID-V1697/2007|Dengue/1-495VIPR_ALG2_221071252_904_2388|DENV-2/KH/BID-V2045/2005|Dengue/1-495VIPR_ALG2_169144340_915_2399|DENV-2/VN/BID-V755/2005|Dengue/1-495VIPR_ALG2_224383612_915_2399|DENV-2/TH/BID-V2304/2001|Dengue/1-495VIPR_ALG2_169144336_915_2399|DENV-2/VN/BID-V753/2004|Dengue/1-495VIPR_ALG2_169144104_915_2399|DENV-2/VN/BID-V722/2006|Dengue/1-495VIPR_ALG2_221070490_915_2399|DENV-2/TH/BID-V2157/2001|Dengue/1-495VIPR_ALG2_169144136_915_2399|DENV-2/VN/BID-V738/2006|Dengue/1-495VIPR_ALG2_209976694_915_2399|DENV-2/VN/BID-V1864/2007|Dengue/1-495VIPR_ALG2_221071238_910_2394|DENV-2/KH/BID-V2036/2003|Dengue/1-495VIPR_ALG2_169143714_915_2399|DENV-2/VN/BID-V918/2006|Dengue/1-495VIPR_ALG2_169144188_915_2399|DENV-2/VN/BID-V775/2007|Dengue/1-495VIPR_ALG2_169144126_915_2399|DENV-2/VN/BID-V733/2006|Dengue/1-495VIPR_ALG2_201071184_921_2405|DF380|Dengue/1-495VIPR_ALG2_169143680_915_2399|DENV-2/VN/BID-V1002/2006|Dengue/1-495VIPR_ALG2_169144088_915_2399|DENV-2/VN/BID-V714/2006|Dengue/1-495VIPR_ALG2_169144102_915_2399|DENV-2/VN/BID-V721/2006|Dengue/1-495VIPR_ALG2_169144350_915_2399|DENV-2/VN/BID-V760/2003|Dengue/1-495VIPR_ALG2_228535526_915_2399|DENV-2/VN/BID-V922/2006|Dengue/1-495VIPR_ALG2_224383606_915_2399|DENV-2/TH/BID-V2301/2001|Dengue/1-495VIPR_ALG2_169144190_915_2399|DENV-2/VN/BID-V776/2007|Dengue/1-495VIPR_ALG2_201071234_866_2350|MD1273|Dengue/1-495VIPR_ALG2_206597906_915_2399|DENV-2/VN/BID-V1682/2007|Dengue/1-495VIPR_ALG2_169144116_908_2392|DENV-2/VN/BID-V728/2006|Dengue/1-495VIPR_ALG2_169143722_915_2399|DENV-2/VN/BID-V923/2006|Dengue/1-495VIPR_ALG2_263613853_915_2399|DENV-2/TH/BID-V4325/2001|Dengue/1-495VIPR_ALG2_201071216_921_2405|MD1240|Dengue/1-495VIPR_ALG2_169143730_915_2399|DENV-2/VN/BID-V927/2004|Dengue/1-495VIPR_ALG2_169143716_915_2399|DENV-2/VN/BID-V919/2006|Dengue/1-495VIPR_ALG2_201071244_907_2391|MD1520|Dengue/1-495VIPR_ALG2_224383600_915_2399|DENV-2/TH/BID-V2296/2001|Dengue/1-495VIPR_ALG2_169144338_915_2399|DENV-2/VN/BID-V754/2005|Dengue/1-495VIPR_ALG2_221071244_915_2399|DENV-2/KH/BID-V2041/2004|Dengue/1-495VIPR_ALG2_169143682_915_2399|DENV-2/VN/BID-V1003/2006|Dengue/1-495VIPR_ALG2_169144140_915_2399|DENV-2/VN/BID-V740/2006|Dengue/1-495VIPR_ALG2_263614165_883_2367|DENV-2/IPC/BID-V3796/2008|Dengue/1-495VIPR_ALG2_263614803_915_2399|DENV-2/IPC/BID-V4265/2007|Dengue/1-495VIPR_ALG2_224383608_915_2399|DENV-2/TH/BID-V2302/2001|Dengue/1-495VIPR_ALG2_187610088_898_2382|DENV-2/VN/BID-V1520/2007|Dengue/1-495VIPR_ALG2_187610241_905_2389|DENV-2/VN/BID-V1522/2007|Dengue/1-495VIPR_ALG2_224383566_915_2399|DENV-2/TH/BID-V2282/2001|Dengue/1-495VIPR_ALG2_221071246_915_2399|DENV-2/KH/BID-V2042/2005|Dengue/1-495VIPR_ALG2_224383598_915_2399|DENV-2/TH/BID-V2295/2001|Dengue/1-495VIPR_ALG2_169144196_915_2399|DENV-2/VN/BID-V779/2007|Dengue/1-495VIPR_ALG2_209976638_903_2387|DENV-2/VN/BID-V1773/2007|Dengue/1-495VIPR_ALG2_259496269_915_2399|DENV-2/KH/BID-V2034/2003|Dengue/1-495VIPR_ALG2_169144092_915_2399|DENV-2/VN/BID-V716/2006|Dengue/1-495VIPR_ALG2_201071166_925_2409|MD1600|Dengue/1-495VIPR_ALG2_169144086_915_2399|DENV-2/VN/BID-V713/2006|Dengue/1-495VIPR_ALG2_221070198_915_2399|DENV-2/VN/BID-V1868/2007|Dengue/1-495VIPR_ALG2_209976734_915_2399|DENV-2/VN/BID-V1905/2008|Dengue/1-495VIPR_ALG2_169143718_915_2399|DENV-2/VN/BID-V920/2006|Dengue/1-495VIPR_ALG2_187610066_915_2399|DENV-2/VN/BID-V1518/2007|Dengue/1-495VIPR_ALG2_169144194_915_2399|DENV-2/VN/BID-V778/2007|Dengue/1-495VIPR_ALG2_169144076_915_2399|DENV-2/VN/BID-V708/2006|Dengue/1-495VIPR_ALG2_209976698_915_2399|DENV-2/VN/BID-V1869/2007|Dengue/1-495VIPR_ALG2_169144180_915_2399|DENV-2/VN/BID-V771/2007|Dengue/1-495VIPR_ALG2_209976570_905_2389|DENV-2/VN/BID-V1696/2007|Dengue/1-495VIPR_ALG2_187610027_915_2399|DENV-2/VN/BID-V1508/2007|Dengue/1-495VIPR_ALG2_209976522_915_2399|DENV-2/VN/BID-V1699/2007|Dengue/1-495VIPR_ALG2_169143686_915_2399|DENV-2/VN/BID-V1005/2006|Dengue/1-495VIPR_ALG2_221070572_915_2399|DENV-2/VN/BID-V1848/2008|Dengue/1-495VIPR_ALG2_209976726_915_2399|DENV-2/VN/BID-V1900/2008|Dengue/1-495VIPR_ALG2_209976718_900_2384|DENV-2/VN/BID-V1895/2008|Dengue/1-495VIPR_ALG2_209976652_915_2399|DENV-2/VN/BID-V1801/2007|Dengue/1-495VIPR_ALG2_206597904_915_2399|DENV-2/VN/BID-V1680/2007|Dengue/1-495VIPR_ALG2_221070580_915_2399|DENV-2/VN/BID-V1858/2007|Dengue/1-495VIPR_ALG2_169144132_914_2398|DENV-2/VN/BID-V736/2006|Dengue/1-495VIPR_ALG2_209976668_912_2396|DENV-2/VN/BID-V1818/2007|Dengue/1-495VIPR_ALG2_169143732_915_2399|DENV-2/VN/BID-V928/2006|Dengue/1-495VIPR_ALG2_209976564_915_2399|DENV-2/VN/BID-V1679/2007|Dengue/1-495VIPR_ALG2_206597908_915_2399|DENV-2/VN/BID-V1690/2007|Dengue/1-495VIPR_ALG2_169144090_915_2399|DENV-2/VN/BID-V715/2006|Dengue/1-495VIPR_ALG2_187610086_915_2399|DENV-2/VN/BID-V1519/2007|Dengue/1-495VIPR_ALG2_197310829_915_2399|DENV-2/VN/BID-V1675/2007|Dengue/1-495VIPR_ALG2_228535516_900_2384|DENV-2/VN/BID-V1796/2007|Dengue/1-495VIPR_ALG2_170666012_915_2399|DENV-2/VN/BID-V1006/2006|Dengue/1-495VIPR_ALG2_169144094_915_2399|DENV-2/VN/BID-V717/2006|Dengue/1-495VIPR_ALG2_169143872_905_2389|DENV-2/VN/BID-V999/2006|Dengue/1-495VIPR_ALG2_221070567_915_2399|DENV-2/VN/BID-V1845/2008|Dengue/1-495VIPR_ALG2_169143870_915_2399|DENV-2/VN/BID-V998/2006|Dengue/1-495VIPR_ALG2_221070559_902_2386|DENV-2/VN/BID-V1837/2007|Dengue/1-495VIPR_ALG2_187610064_898_2382|DENV-2/VN/BID-V1517/2007|Dengue/1-495VIPR_ALG2_221070204_915_2399|DENV-2/VN/BID-V1930/2007|Dengue/1-495VIPR_ALG2_169144074_915_2399|DENV-2/VN/BID-V707/2006|Dengue/1-495VIPR_ALG2_263614227_916_2400|DENV-2/IPC/BID-V3799/2008|Dengue/1-495VIPR_ALG2_169143868_915_2399|DENV-2/VN/BID-V997/2006|Dengue/1-495VIPR_ALG2_221070508_915_2399|DENV-2/VN/BID-V1780/2007|Dengue/1-495VIPR_ALG2_169143728_915_2399|DENV-2/VN/BID-V926/2006|Dengue/1-495VIPR_ALG2_221070595_915_2399|DENV-2/VN/BID-V1873/2007|Dengue/1-495VIPR_ALG2_263614116_901_2385|DENV-2/IPC/BID-V3789/2007|Dengue/1-495VIPR_ALG2_169144122_915_2399|DENV-2/VN/BID-V731/2006|Dengue/1-495VIPR_ALG2_263614952_915_2399|DENV-2/IPC/BID-V4277/2008|Dengue/1-495VIPR_ALG2_263614184_895_2379|DENV-2/IPC/BID-V3797/2008|Dengue/1-495VIPR_ALG2_221071268_940_2424|DENV-2/KH/BID-V2068/2008|Dengue/1-495VIPR_ALG2_209976708_915_2399|DENV-2/VN/BID-V1881/2007|Dengue/1-495VIPR_ALG2_263614700_904_2388|DENV-2/IPC/BID-V3922/2008|Dengue/1-495VIPR_ALG2_259496275_916_2400|DENV-2/KH/BID-V2062/2007|Dengue/1-495VIPR_ALG2_169144068_915_2399|DENV-2/VN/BID-V704/2006|Dengue/1-495VIPR_ALG2_263614922_915_2399|DENV-2/IPC/BID-V4271/2008|Dengue/1-495VIPR_ALG2_263614206_867_2351|DENV-2/IPC/BID-V3798/2008|Dengue/1-495VIPR_ALG2_169143724_905_2389|DENV-2/VN/BID-V924/2006|Dengue/1-495VIPR_ALG2_263614142_881_2365|DENV-2/IPC/BID-V3795/2008|Dengue/1-495VIPR_ALG4_300828812_937_2421|DENV-2/PR/36DN/1994|Dengue/1-495VIPR_ALG2_6581079_937_2421|43|Dengue/1-495VIPR_ALG2_40643331_880_2364|Bangkok/1-495VIPR_ALG2_228542998_915_2399|DENV-2/Harvard/BID-V2991/2009|Dengue/1-495VIPR_ALG2_228542973_915_2399|DENV-2/Harvard/BID-V2990/2009|Dengue/1-495VIPR_ALG2_169144238_915_2399|DENV-2/US/BID-V595/2006|Dengue/1-495VIPR_ALG2_221071234_904_2388|DENV-2/KH/BID-V2030/2003|Dengue/1-495VIPR_ALG2_221071224_905_2389|DENV-2/KH/BID-V2020/2001|Dengue/1-495VIPR_ALG2_221071236_900_2384|DENV-2/KH/BID-V2033/2003|Dengue/1-495VIPR_ALG2_259496201_915_2399|DENV-2/BR/BID-V3486/2008|Dengue/1-495VIPR_ALG2_180164974_915_2399|DENV-2/US/BID-V1413/2007|Dengue/1-495VIPR_ALG2_51233480_937_2421|DR23/01|Dengue/1-495VIPR_ALG2_263613676_914_2398|DENV-2/BR/BID-V3645/2008|Dengue/1-495VIPR_ALG2_239840452_915_2399|DENV-2/BR/BID-V2402/2008|Dengue/1-495VIPR_ALG2_169144248_915_2399|DENV-2/US/BID-V600/2005|Dengue/1-495VIPR_ALG2_51233483_937_2421|DR31/01|Dengue/1-495VIPR_ALG2_263613783_902_2386|DENV-2/BR/BID-V3650/2008|Dengue/1-495VIPR_ALG2_263613710_915_2399|DENV-2/BR/BID-V3648/2008|Dengue/1-495VIPR_ALG2_263613554_915_2399|DENV-2/BR/BID-V3638/2008|Dengue/1-495VIPR_ALG2_263613594_915_2399|DENV-2/BR/BID-V3640/2008|Dengue/1-495VIPR_ALG2_51233485_937_2421|DR59/01|Dengue/1-495VIPR_ALG2_263613028_915_2399|DENV-2/BR/BID-V3495/2008|Dengue/1-495VIPR_ALG2_263613825_915_2399|DENV-2/BR/BID-V3653/2008|Dengue/1-495VIPR_ALG2_239840456_915_2399|DENV-2/JM/BID-V2963/2007|Dengue/1-495VIPR_ALG2_225690966_915_2399|DENV-2/BR/BID-V2399/2007|Dengue/1-495VIPR_ALG2_259496197_915_2399|DENV-2/BR/BID-V3481/2008|Dengue/1-495VIPR_ALG2_187610175_915_2399|DENV-2/US/BID-V1441/2005|Dengue/1-495VIPR_ALG2_263613639_915_2399|DENV-2/BR/BID-V3644/2008|Dengue/1-495VIPR_ALG2_259496199_915_2399|DENV-2/BR/BID-V3483/2008|Dengue/1-495VIPR_ALG2_228541869_915_2399|DENV-2/VI/BID-V2960/2005|Dengue/1-495VIPR_ALG2_187610173_915_2399|DENV-2/US/BID-V1439/2005|Dengue/1-495VIPR_ALG2_298388351_915_2399|DENV-2/BR/BID-V3637/2008|Dengue/1-495VIPR_ALG4_318085585_841_2325|BR0690/RJ/2008|Dengue/1-495VIPR_ALG2_228541827_915_2399|DENV-2/DO/BID-V2955/2003|Dengue/1-495VIPR_ALG2_169143684_915_2399|DENV-2/VN/BID-V1004/2006|Dengue/1-495VIPR_ALG2_169144110_906_2390|DENV-2/VN/BID-V725/2006|Dengue/1-495VIPR_ALG2_201071162_925_2409|MD903|Dengue/1-495VIPR_ALG2_169144114_915_2399|DENV-2/VN/BID-V727/2006|Dengue/1-495VIPR_ALG2_201071228_920_2404|DF657|Dengue/1-495VIPR_ALG2_201071196_921_2405|DF699|Dengue/1-495VIPR_ALG2_201071190_921_2405|DF593|Dengue/1-495VIPR_ALG2_201071208_921_2405|MD863|Dengue/1-495VIPR_ALG2_169144082_915_2399|DENV-2/VN/BID-V711/2006|Dengue/1-495VIPR_ALG2_201071202_921_2405|MD518|Dengue/1-495VIPR_ALG2_169144106_903_2387|DENV-2/VN/BID-V723/2006|Dengue/1-495VIPR_ALG2_201071204_921_2405|MD594|Dengue/1-495VIPR_ALG2_169144118_915_2399|DENV-2/VN/BID-V729/2006|Dengue/1-495VIPR_ALG2_201071194_921_2405|DF674|Dengue/1-495VIPR_ALG2_201071236_894_2378|MD1275|Dengue/1-495VIPR_ALG2_201071158_926_2410|DF768|Dengue/1-495VIPR_ALG4_304360616_937_2421|D2/PF/UH00/1973|Dengue/1-495VIPR_ALG2_239840434_915_2399|DENV-2/UMASS-Medical/BID-V2621/2008|Dengue/1-495VIPR_ALG2_239840432_915_2399|DENV-2/UMASS-Medical/BID-V2620/2008|Dengue/1-495VIPR_ALG2_239840430_915_2399|DENV-2/UMASS-Medical/BID-V2619/2008|Dengue/1-495VIPR_ALG2_228542750_915_2399|DENV-2/PG/BID-V2618/2008|Dengue/1-495VIPR_ALG2_228543031_915_2399|DENV-2/Harvard/BID-V2992/2009|Dengue/1-495VIPR_ALG2_4926946_925_2409|IQT2913|Dengue/1-495VIPR_ALG2_2723945_937_2421|New/1-495VIPR_ALG2_201071226_894_2378|CSF381|Dengue/1-495VIPR_ALG2_228543058_915_2399|DENV-2/Harvard/BID-V2993/2009|Dengue/1-495VIPR_ALG2_146188915_937_2421|PL046|Dengue/1-495VIPR_ALG2_201071222_921_2405|MD1366|Dengue/1-495VIPR_ALG2_201071198_921_2405|DF755|Dengue/1-495VIPR_ALG2_254749415_918_2402|VNHCM18-K/02|Dengue/1-495VIPR_ALG2_6581077_937_2421|44|Dengue/1-495VIPR_ALG2_77024331_937_2421|ThD2_0284_90|Dengue/1-495VIPR_ALG2_2155260_937_2421|PDK-53|Dengue/1-495VIPR_ALG2_259496213_915_2399|DENV-2/TH/BID-V3357/1964|Dengue/1-495VIPR_ALG2_225690940_905_2389|DENV-2/BR/BID-V2386/2003|Dengue/1-495VIPR_ALG2_225690960_905_2389|DENV-2/BR/BID-V2396/2006|Dengue/1-495VIPR_ALG2_169143946_915_2399|DENV-2/US/BID-V1177/1989|Dengue/1-495VIPR_ALG2_169635125_915_2399|DENV-2/US/BID-V1087/1991|Dengue/1-495VIPR_ALG2_197310668_902_2386|DENV-2/CO/BID-V1599/1944|Dengue/1-495VIPR_ALG2_209976574_915_2399|DENV-2/CO/BID-V1598/1944|Dengue/1-495VIPR_ALG4_304360598_924_2408|D2/FJ/UH22/1971|Dengue/1-495VIPR_ALG2_201071206_921_2405|MD861|Dengue/1-495VIPR_ALG2_169144344_915_2399|DENV-2/VN/BID-V757/2003|Dengue/1-495VIPR_ALG2_201071180_927_2411|MD1504|Dengue/1-495VIPR_ALG2_169143930_915_2399|DENV-2/US/BID-V1168/1987|Dengue/1-495VIPR_ALG2_201071218_921_2405|MD1270|Dengue/1-495VIPR_ALG2_221071230_915_2399|DENV-2/KH/BID-V2023/2002|Dengue/1-495VIPR_ALG2_221071226_915_2399|DENV-2/KH/BID-V2021/2002|Dengue/1-495VIPR_ALG2_169143876_915_2399|DENV-2/US/BID-V1032/1998|Dengue/1-495VIPR_ALG2_201071178_927_2411|MD902|Dengue/1-495VIPR_ALG2_201071192_921_2405|DF670|Dengue/1-495VIPR_ALG2_201071232_917_2401|MD1244|Dengue/1-495VIPR_ALG2_254749413_918_2402|VNHCM18-C/02|Dengue/1-495VIPR_ALG2_169144342_915_2399|DENV-2/VN/BID-V756/2003|Dengue/1-495VIPR_ALG2_221071228_915_2399|DENV-2/KH/BID-V2022/2002|Dengue/1-495VIPR_ALG2_221071232_915_2399|DENV-2/KH/BID-V2024/2002|Dengue/1-495VIPR_ALG2_201071200_921_2405|DF897|Dengue/1-495VIPR_ALG2_201071240_898_2382|MD1280|Dengue/1-495VIPR_ALG2_201071212_921_2405|MD919|Dengue/1-495VIPR_ALG2_169144356_915_2399|DENV-2/VN/BID-V763/2003|Dengue/1-495VIPR_ALG2_201071160_926_2410|DF900|Dengue/1-495VIPR_ALG2_201071214_921_2405|MD944|Dengue/1-495VIPR_ALG2_201071172_927_2411|DF726|Dengue/1-495VIPR_ALG2_225690954_915_2399|DENV-2/BR/BID-V2393/2005|Dengue/1-495VIPR_ALG2_201071242_919_2403|MD1284|Dengue/1-495VIPR_ALG2_225690948_915_2399|DENV-2/BR/BID-V2390/2004|Dengue/1-495VIPR_ALG2_169144352_915_2399|DENV-2/VN/BID-V761/2003|Dengue/1-495VIPR_ALG2_169144346_915_2399|DENV-2/VN/BID-V758/2003|Dengue/1-495VIPR_ALG2_225690932_915_2399|DENV-2/BR/BID-V2379/2001|Dengue/1-495VIPR_ALG2_201071174_927_2411|DF727|Dengue/1-495VIPR_ALG2_201071210_921_2405|MD917|Dengue/1-495VIPR_ALG2_169144254_915_2399|DENV-2/US/BID-V677/1998|Dengue/1-495VIPR_ALG2_259496307_904_2388|DENV-2/BR/BID-V2385/2003|Dengue/1-495VIPR_ALG2_169143926_915_2399|DENV-2/US/BID-V1166/1987|Dengue/1-495VIPR_ALG2_169144360_915_2399|DENV-2/VN/BID-V765/2003|Dengue/1-495VIPR_ALG2_201071170_927_2411|DF707|Dengue/1-495VIPR_ALG2_169144348_915_2399|DENV-2/VN/BID-V759/2003|Dengue/1-495VIPR_ALG2_201071188_921_2405|DF404|Dengue/1-495VIPR_ALG2_169144256_915_2399|DENV-2/US/BID-V678/1998|Dengue/1-495VIPR_ALG2_169144362_915_2399|DENV-2/VN/BID-V766/2003|Dengue/1-495VIPR_ALG2_225690936_901_2385|DENV-2/BR/BID-V2382/2002|Dengue/1-495VIPR_ALG2_201071224_921_2405|MD1515|Dengue/1-495VIPR_ALG2_201071230_893_2377|MD510|Dengue/1-495VIPR_ALG2_259496211_915_2399|DENV-2/MX/BID-V3356/1992|Dengue/1-495VIPR_ALG2_228541787_915_2399|DENV-2/HN/BID-V2945/1984|Dengue/1-495VIPR_ALG2_77024339_937_2421|ThD2_0168_79|Dengue/1-495VIPR_ALG2_169635135_905_2389|DENV-2/US/BID-V585/2006|Dengue/1-495VIPR_ALG2_158602428_936_2420|IQT-1950|Dengue/1-495VIPR_ALG2_4926944_925_2409|IQT1797|Dengue/1-495VIPR_ALG2_280987262_937_2421|S16803|Dengue/1-495VIPR_ALG2_259496231_915_2399|DENV-2/PR/BID-V3367/1969|Dengue/1-495VIPR_ALG2_169144228_915_2399|DENV-2/US/BID-V589/2006|Dengue/1-495VIPR_ALG2_158602441_937_2421|1328|Dengue/1-495VIPR_ALG2_4926948_926_2410|131|Dengue/1-495VIPR_ALG2_259496215_915_2399|DENV-2/CO/BID-V3358/1986|Dengue/1-495VIPR_ALG2_259496229_915_2399|DENV-2/VE/BID-V3366/1987|Dengue/1-495VIPR_ALG2_2723943_937_2421|New/1-495VIPR_ALG2_77024341_937_2421|ThD2_0038_74|Dengue/1-495VIPR_ALG2_259496207_915_2399|DENV-2/MX/BID-V3354/1983|Dengue/1-495VIPR_ALG2_56089723_937_2421|Tonga/74|Dengue/1-495VIPR_ALG2_56809014_926_2410|I348600|Dengue/1-495VIPR_ALG2_4926940_926_2410|Ven2|Dengue/1-495VIPR_ALG2_259496209_915_2399|DENV-2/MX/BID-V3355/1983|Dengue/1-495VIPR_ALG4_300828758_937_2421|DENV-2/ID/1183DN/1977|Dengue/1-495VIPR_ALG4_304360628_937_2421|D2/TO/UH94/1974|Dengue/1-495VIPR_ALG4_304360594_937_2421|D2/FJ/UH21/1971|Dengue/1-495VIPR_ALG4_304360624_909_2393|D2/TO/UH39/1974|Dengue/1-495VIPR_ALG4_304360618_937_2421|D2/TO/UH16/1974|Dengue/1-495VIPR_ALG4_304360608_937_2421|D2/AS/UH85/1972|Dengue/1-495VIPR_ALG4_304360610_937_2421|D2/AS/UH73/1972|Dengue/1-495VIPR_ALG4_300828780_937_2421|DENV-2/ID/1022DN/1975|Dengue/1-495VIPR_ALG4_304360600_937_2421|D2/NC/UH37/1971|Dengue/1-495VIPR_ALG4_304360602_937_2421|D2/NC/UH97/1972|Dengue/1-495VIPR_ALG4_304360630_937_2421|D2/TO/UH04/1974|Dengue/1-495VIPR_ALG4_304360620_937_2421|D2/TO/UH19/1974|Dengue/1-495VIPR_ALG4_304360596_937_2421|D2/FJ/UH40/1971|Dengue/1-495VIPR_ALG4_304360626_937_2421|D2/TO/UH44/1974|Dengue/1-495VIPR_ALG4_304360604_937_2421|D2/AS/UH77/1972|Dengue/1-495VIPR_ALG4_304360612_937_2421|D2/PF/UH50/1972|Dengue/1-495VIPR_ALG4_304360614_937_2421|D2/PF/UH57/1971|Dengue/1-495VIPR_ALG4_304360606_937_2421|D2/AS/UH79/1972|Dengue/1-495VIPR_ALG4_304360622_937_2421|D2/TO/UH20/1974|Dengue/1-495VIPR_ALG2_132271159_937_2421|Dak/1-495VIPR_ALG2_132271157_937_2421|Dak/1-495VIPR_ALG2_157419258_923_2407|IBH11234|Dengue/1-495VIPR_ALG2_132271165_937_2421|IBH11664|Dengue/1-495VIPR_ALG2_132271163_937_2421|IBH11208|Dengue/1-495VIPR_ALG2_132271153_937_2421|Dak/1-495VIPR_ALG2_132271169_931_2415|Dak/1-495VIPR_ALG2_132271167_937_2421|Dak/1-495VIPR_ALG2_148828517_938_2422|Dak/1-495VIPR_ALG2_132271145_937_2421|PM33974|Dengue/1-495VIPR_ALG2_132271149_937_2421|Dak/1-495VIPR_ALG2_132271155_937_2421|Dak/1-495VIPR_ALG2_132271151_937_2421|Dak/1-495VIPR_ALG2_132271161_936_2420|Dak/1-495

    - - - M R C IG I S N R D F V E G V S G G SW V D IV L E H G S C V T T M A R N K P T L D F E L IK T E A K Q P A T L R K F C I E A K L T N T T T E S R C P T Q G E P S L V E EQ D K R F V C K H SM V D R G W G N G C G L F G K G G V V T C A M F T C L K N M E G K V V Q P E N L E Y T V V IT P H S G E E H A V G N D T G K H G K E V K IT P Q S S IT E A E L T G Y G T IT M E C S P R T G L D F N EM V L LQ M E N K A W L V H R Q W F L D L P L P W L P G A D T Q G S N W IQ K EM L V T F K N P H A K K Q D V V V L G SQ E G A M H T A L T G A T E IQ M S S G N L L F T G H L K C R L R M D K LQ L K G M S Y SM C T G K F K V V K E IA E T Q H G T IV IR V Q Y E G E G A P C K IP F E IM D L E K K H V L G R L IT V N P IV T E K D S P IN I E A E P P F G D S Y IV IG V E P G Q L K L N W F K K G S S IG Q M F E T T M R G A K R M A I L G D T A W D F G S L G G V F T S V G K A L H Q V F G A IY G V A F S G V SW T M K I L IG V I IT W IG M N S R S T S L S V T L V IV G IV T L Y L G V M V Q A- - - M R C IG I S N R D F V E G V S G G SW V D IV L E H G S C V T T M A K N K P T L D F E L IK T E A K Q P A T L R K F C I E A K L T N T T T E S R C P T Q G E P S L V E EQ D K R F V C K H SM V D R G W G N G C G L F G K G G V V T C A M F T C L K N M E G K V V Q P E N L E Y T IV IT P H S G E E H A V G N D T G K H G K E V K IT P Q S S IT E A E L T G Y G T IT M E C S P R T G L D F N EM V L LQ M E K K A W L V H R Q W F L D L P L P W L P G A D T Q G S N W IQ K EM L V T F K N P H A K K Q D V V V L G SQ E G A M H T A L T G A T E IQ M S S G N L L F T G H L K C R L R M D K LQ L K G M S Y SM C T G K F K V V K E IA E T Q H G T IV IR V Q Y E G E G A P C K IP F E IM D L E K K H V L G R L IT V N P IV T E K D S P IN I E A E P P F G D S Y IV IG V E P G Q L K L N W F K K G S S IG Q M F E T T M R G A K R M A I L G D T A W D F G S L G G V F T S V G K A L H Q V F G A IY G V A F S G V SW T M K I L IG V I IT W IG M N S R S T S L S V T L V IV G IV T L Y L G V M V Q A- - 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- M R C S G I S N R D F V E G V S G G SW V D IV L E H G S C V T T M A K N K P T L D F E L IK T E A K H P A T L R K Y C I E A R L T N T T T A S R C P T Q G E P S L N E EQ D K R F V C K H SM V D R G W G N G C G L F G K G G IV T C A M F T C K K N M E G K IV Q P E N L E Y T IV V T P H S G E E N A V G N D T G K H G K E IK V T P Q S S IT E A E L T G Y G T V T M E C S P R T G L D F N EM V L LQ M E N K A W L V H R Q W F L D L P L P W L P G A D T Q G S N W IQ K E T L V T F K N P H A K K Q D V V V L G SQ E G A M H T A L T G A T E IQ M S S G N L L F T G H L K C R L R M D K LQ L K G M S Y SM C T G K F K V V K E IA E T Q H G T IV IR V Q Y E G D G S P C K IP F E IM D L E K R H V L G R L IT V N P IV T E K D S P V N I E A E P P F G D S Y I I IG V E P G Q L K L SW F K K G S S IG Q M F E T T M R G A K R M A I L G G T A W D F G S L G G V F T S IG K A L H Q V F G A IY G A A F S G V SW T M K I L IG V V IT W IG M N S R S T S L S V S L V L V G V V T L Y L G A M V Q A- - - M R C IG I S N R D F V E G V S G G SW V D IV L E H G S C V T T M A K N K P T L D F E L IK T E A K Q P A T L R K Y C I E A K L T N T T T A S R C P T Q G E P S L N E EQ D K R F V C K H SM V D R G W G N G C G L F G K G G IV T C A M F T C K K N M E G K V V Q P E N L E Y T IV IT P H S G E E N A V G N D T G K H G K E IK IT P Q S S IT E A E L IG Y G T V T M E C S P R T G L D F N EM V L LQ M E N K A W L V H R Q W F L D L P L P W L P G A D T Q G S N W IQ K E T L V T F K N P H A K K Q D V V V L G SQ E G A M H T A L T G A T E IQ M S S G N L L F T G H L K C R L R M D K LQ L K G M S Y SM C T G K F K V V K E IA E T Q H G T IV IR V Q Y E G D G S P C K IP F E IM D L E K R H V L G R L IT V N P IV T E K D S P V N I E A E P P F G D S Y I I IG V E P G Q L K L N W F K K G S S IG Q M F E T T M R G A K R M A I L G D T A W D F G S L G G V F T S IG K A L H Q V F G A IY G A A F S G V SW T M K I L IG V V IT W IG M N S R S T S L S V S L V L V G V V T L Y L G V M V Q A- - 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