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Mot
if
Gro
up S
peci
ficity
Gro
up S
peci
ficity
Ran
k
Site
Spe
cific
ity
Site
Spe
cific
y R
ank
Test
set S
ites
Aver
age
Test
set S
ites
StD
ev T
ests
et S
ites
TRA
NSF
AC
Cor
rela
tion
TRA
NSF
AC
ID
Mot
if Fi
nder
s
Sets
Rep
eats
Logo
1 4.40e-011 1 3.90e-011 1 7 1.40 1.10 AA, BP, ME 1, 2, 3, 5 PAL TGA
GCTT
ATCGG
TTAC
CA
GA
TCA
GCAT
AACA
CAT
GACG
AAGT
TGA
ATCA
GTG
TGA
TGAA
GACG G
A
2 4.40e-011 1 3.90e-011 1 6 1.20 1.10 AA 1, 2, 3, 4, 5 AT
ACT A ACGTA
CT
AGC
CT
AGTC
T T A ACG
GTAA
CCTA G
ACT
TAC
TAC C
GA AG
3 1.00e-010 3 5.30e-011 1 4 0.80 0.84 AA 1, 3, 4 PAL ATT CA
TGA
TAATCT
ACTGCATAGCT
AGCA
TGCT
GCAAGA
TGAAT
GAAGCTACAC
ATAC
GA TAGG
TCG G
TCAG
AG4 1.00e-010 3 5.80e-011 1 3 0.60 0.55 AA 2, 4 PAL A
TTCA
CTC AG
CCA
CT TT
GT TCG AT
AG AA5 1.00e-010 3 5.60e-011 2 4 0.80 0.84 AA 5 PAL TT
CCATA
GCATCAGCAGT
A CA
TGATAGA
TTACG
TATTAT
G TCGAT
GAG
AATGCAGC
GTGAACA
GAACT
6 1.00e-009 6 5.90e-010 5 3 0.60 0.55 AA 1, 2, 3, 4, 5 PAL AAT
TA
ACAAA C
T TGC
GA
TAGG
A AA7 1.00e-009 6 5.40e-010 2 5 1.00 1.00 AA 1, 2, 3 TR C
AGATCTGG
T A GATCAGT TA
GCATCAGCTGG
TTACC
AATGATG
CAAGA
TGAAG
ACATACA
GGAATGTACT
CAT
GTG
GT
8 2.00e-009 9 1.10e-009 2 5 1.00 1.00 AA 1, 2, 3 TR TA
CGAG
CAT
ACT
TACC
ATA
GA
GCAG
AGCA
GTA A
TGATG AT
AGA
TA
TAG
CAGC
A
9 5.60e-009 10 3.10e-009 6 6 1.20 1.30 AA 1, 3, 4 TR AT
AT
ACAA
TTA
GCAT
A AT
TA
ATC
ACG
TGA
TAGA
TCG
AGTT
AGAAA
TGT
ACAGA
CGTA A
10 8.50e-009 11 4.70e-009 8 5 1.00 1.00 AA 1, 2, 4 PAL CT
TA
AT
AG
TA
AGT
AGCA
GATA
GTA
GAT G
AT TACA T
GAA
GTA
AT
GCAG
ATGAT
A
11 1.10e-008 13 1.10e-008 6 6 1.20 0.84 AA, BP, MD, ME 1, 2, 3, 4, 5 TGAC
ACA
TACAG
CAT
ACGTA
CCTAT
AGT
TGA
GGT
AG
TA
GA
12 1.20e-008 14 6.60e-009 5 5 1.00 1.00 AA 3 PAL AAGCA
T CAAA
GT G
AGCA
ACT
CGAAG
AAGC
TGA
CGT G
TCG
GT
GTCA
TAGAA
TG
TGA
CGAT
AAGC
TGAC
T
13 1.20e-008 14 6.90e-009 6 4 0.80 0.84 AA 1, 2, 3, 4, 5 TATAGCATGATA
TAATGC
GA ATGTAG
CTAGG
CTAC
ATCA
ATGG
AAG
CAT
A ATA
TC
14 1.70e-008 16 9.90e-009 5 6 1.20 1.30 AA, BP, MD, ME 5 GAAT
AG
CAGG
AATGG
AATGG
CTA
GT TG
AGT
TA
GA
TGA
TCG
GA
15 3.80e-008 20 3.70e-008 9 6 1.20 1.10 AA, BP 1, 2, 3, 4, 5 TCGATCA G
ACT
TAG
TCG
GT T
ACA
GTAA
GTA
CG
TGA
CA
16 4.60e-008 21 2.80e-008 7 5 1.00 1.00 AA 2, 3, 5 PAL GT
TGA
TAGACTT
CGC
TTCA G
AAT
GA
GCT
ATG A
17 6.80e-008 23 3.70e-008 9 4 0.80 0.84 AA 1, 3, 5 PAL,TR CA
AT
GT
AGCC
ATAT
ATA
ATC
TCAT
ATAC
CTAG
CTA
CT
TA
CT
ATG
ATG G
AGA
CGAA
G GA
GCAAA
GCC
ACA
18 8.20e-008 24 4.80e-008 9 6 1.20 1.10 AA 2, 3, 4, 5 TAG
AG
CA
AGC
ATGG
TATCC
AATAAC
A TA
GCAC
AAT
TA
19 1.10e-007 27 6.90e-008 10 4 0.80 0.84 AA, BP, MD, ME 1, 2, 3, 4 ACTGA
GCC
ATATGC
TATGG
TTGTAC
TCG
TCAATA
GTG
20 1.80e-007 28 1.00e-007 11 7 1.40 1.50 AA 2, 4 PAL AT
GCT
AGCTA
TC
TA
AT
CGAC
AA GA
TCA
GA
AGCT A
TTCA
ATGGG
TA
CAG
GTA
21 2.00e-007 29 1.20e-007 12 5 1.00 1.20 AA 5 PAL ACGAA
TGA A
CAC
TAG
CGA
CTG
TGCTG
CAAGG
C
22 2.30e-007 30 2.10e-007 14 8 1.60 1.30 AA 3, 4 PAL GCA
CTA
TAC
TA
ATG
TAC
CGA
TCA
ACTCTGAT
ACTA
AGCG
AACGT
ATG
GAT
CG
CTG T
AAGC
A
23 2.90e-007 31 1.80e-007 13 5 1.00 1.20 AA, BP 1 CG
AGC
AATGT
CAG
ATGT
CATTT
CGA
TAGCA
T T24 2.90e-007 31 2.80e-007 13 6 1.20 1.10 BP 1, 2, 3, 4, 5 T
GCGTGA
CTGTGA
CGAA
GACT
AGT
AGT
TCGA
TTGCC
TGTCC
T
25 3.30e-007 33 1.80e-007 11 6 1.20 1.10 AA 3 AT
CTA
TAG
CTA
TAC
TCA T
ATCATGCATGCA AG
CT
ACT
ATGG
TCT
GA
GATGG
AGA
AG
TA
ACG
CAG
CAT T
26 4.30e-007 34 4.10e-007 13 5 1.00 0.71 AA, BP 1, 2, 3, 4, 5 TAGA
TGA
TAC
GTAGA
TTGCAA
CTG
ATA
CATC
TATCC
ATA
27 7.20e-007 37 4.10e-007 16 8 1.60 1.70 AA 2, 3, 4, 5 TA AG
TA
GA A T
CA
CAT
GTA G
ATG
TA
TAGG
TGAAC
GGA
28 8.40e-007 38 4.80e-007 15 4 0.80 0.84 AA 3 PAL,TR ACA
CA
ATCT
ATAGTA
CG
ACT
CGT
ATG
AGT A
GAGAAT
AG
TGA
TCA A
TAG
TA
29 9.10e-007 39 8.90e-007 18 5 1.00 0.71 AA, BP, ME 1, 2, 3, 4, 5 CT
GCA
CTTG
AGAT
AGG
ACGTT
GACGT
30 2.70e-006 41 2.40e-006 21 10 2.00 1.40 AA 4, 5 PAL TGA C
AGCTA T
ACC
AACTG
TTG
GTAA
GTAG
AGA
CGAA
GGAC
TA A
T
31 4.60e-006 44 2.40e-006 24 7 1.40 1.30 AA 3 TA
TCA
TGA
GTA
TGCA C
TCAT
GCTC
GGATA
GGAG
ATGG
A A TA
AGT C
AAT
TCA
CA
32 5.70e-006 45 3.30e-006 16 6 1.20 1.30 AA, BP 1, 5 TA
CTG
ACGTC
AGA A
GTA
GAT
CG
TA
CA
TCAA
TCAT AT
ACT
A
33 6.20e-006 46 5.70e-006 22 6 1.20 0.84 BP 4 PAL TA
TAG
AGC
TAC
TTGA
CAT
TAG
TGC T
ACA
GTAT
GCGAT
GCAGT
A
34 1.90e-005 49 1.00e-005 28 4 0.80 1.10 AA 3 TCG
TAT
GGTGATAGG
AAC
GAGAG
CTA
ACT
ACTTC
TAG
35 2.80e-005 51 2.50e-005 23 9 1.80 1.50 AA, BP 2, 3, 5 PAL,TR GAC
ACT
GCAT
CATGTAG
TCGAGTA
TGC
GTAT
GAGCA G
ATA
TA
GCTAC
ATA
CG
CA
36 3.60e-005 53 2.10e-005 30 5 1.00 1.20 BP 3 TR ACT
GTG
TATGA
TAGT
CGTG
ACT
ATG
CAT T
GTA
CA
GA
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