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Dataset Mdata_gsea.indy_phenotype_file.cls #indy_5d_versus_wt_5d.indy_phenotype_file.cls #indy_5d_versus_wt_5d_repos Phenotype indy_phenotype_file.cls#indy_5d_versus_wt_5d_repos Upregulated in class wt_5d GeneSet 00190 Enrichment Score (ES) -0.28233922 Normalized Enrichment Score (NES) -1.2549115 Nominal p-value 0.07106599 FDR q-value 0.66798866 FWER p-Value 0.991 Table: GSEA Results Summary Fig 1: Enrichment plot: 00190

Table: GSEA Results Summary

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Page 1: Table: GSEA Results Summary

DatasetMdata_gsea.indy_phenotype_file.cls#indy_5d_versus_wt_5d.indy_phenotype_file.cls#indy_5d_versus_wt_5d_repos

Phenotype indy_phenotype_file.cls#indy_5d_versus_wt_5d_repos

Upregulated in class wt_5d

GeneSet 00190

Enrichment Score (ES) -0.28233922

Normalized Enrichment Score (NES) -1.2549115

Nominal p-value 0.07106599

FDR q-value 0.66798866

FWER p-Value 0.991

Table: GSEA Results Summary

Fig 1: Enrichment plot: 00190

Page 2: Table: GSEA Results Summary

Profile of the Running ES Score & Positions of GeneSet Members on the Rank OrderedList

PROBE DESCRIPTION(from dataset) GENE SYMBOL GENE_TITLE

RANK INGENELIST

RANKMETRICSCORE

RUNNINGES

COREENRICHMENT

1 976 naFBGN0032464Entrez, Source, GeneCards

CG5075 157 0.555 0.0250 No

2 6995 naFBGN0037860Entrez, Source, GeneCards

CG6629 447 0.393 0.0281 No

3 4089 naFBGN0011455Entrez, Source, GeneCards

l(3)neo18 466 0.387 0.0530 No

4 8462 naFBGN0032373Entrez, Source, GeneCards

CG12602 483 0.382 0.0778 No

5 10390 naFBGN0039909Entrez, Source, GeneCards

CG1970 523 0.366 0.0995 No

6 1832 naFBGN0036830Entrez, Source, GeneCards

CG14077 1051 0.261 0.0741 No

7 9929 naFBGN0010217Entrez, Source, GeneCards

ATPsyn-beta 1127 0.253 0.0852 No

8 2936 naFBGN0030733Entrez, Source, GeneCards

CG3560 1148 0.251 0.1007 No

9 2014 naFBGN0020368Entrez, Source, GeneCards

Vha68-1 1181 0.248 0.1150 No

10 9158 naFBGN0034169Entrez, Source, GeneCards

CG9013 1291 0.238 0.1223 No

11 4747 naFBGN0031941Entrez, Source, GeneCards

CG7211 1337 0.235 0.1346 No

12 6352 naFBGN0020367Entrez, Source, GeneCards

Vha68-2 1343 0.235 0.1502 No

13 2506 naFBGN0031228Entrez, Source, GeneCards

CG11455 1637 0.206 0.1403 No

14 5294 naFBGN0031771Entrez, Source, CG9140 1926 0.185 0.1292 No

Table: GSEA details [plain text format]

Page 3: Table: GSEA Results Summary

GeneCards

15 10210 naFBGN0037172Entrez, Source, GeneCards

CG6914 2128 0.172 0.1245 No

16 10818 naFBGN0033706Entrez, Source, GeneCards

CG13167 2449 0.154 0.1087 No

17 8618 naFBGN0039112Entrez, Source, GeneCards

CG10219 2518 0.150 0.1134 No

18 9752 naFBGN0038295Entrez, Source, GeneCards

Gyc88E 2759 0.139 0.1032 No

19 2180 naFBGN0039576Entrez, Source, GeneCards

CG17856 2788 0.138 0.1103 No

20 1050 naFBGN0015396Entrez, Source, GeneCards

jumu 2813 0.136 0.1176 No

21 3936 naFBGN0029888Entrez, Source, GeneCards

CG3192 3137 0.121 0.0994 No

22 2648 naFBGN0037579Entrez, Source, GeneCards

CG18193 3271 0.115 0.0963 No

23 9471 naFBGN0035600Entrez, Source, GeneCards

CG4769 3515 0.105 0.0835 No

24 5266 naFBGN0021906Entrez, Source, GeneCards

RFeSP 3604 0.101 0.0832 No

25 11688 naFBGN0033393Entrez, Source, GeneCards

CG8029 3681 0.098 0.0836 No

26 10795 naFBGN0022097Entrez, Source, GeneCards

Vha36 3853 0.091 0.0758 No

27 2881 naFBGN0034938Entrez, Source, GeneCards

CG3803 3877 0.091 0.0801 No

28 8425 naFBGN0031684Entrez, Source, GeneCards

CG8680 3990 0.087 0.0768 No

29 8795 naFBGN0029971Entrez, Source, GeneCards

CG18624 4030 0.085 0.0795 No

30 9558 naFBGN0028671Entrez, Source, GeneCards

Vha100-1 4053 0.085 0.0834 No

Page 4: Table: GSEA Results Summary

31 7703 naFBGN0028665Entrez, Source, GeneCards

VhaAC39 4230 0.077 0.0742 No

32 10586 naFBGN0040773Entrez, Source, GeneCards

CG2249 4237 0.077 0.0790 No

33 11366 naFBGN0039651Entrez, Source, GeneCards

CG14508 4275 0.076 0.0811 No

34 1460 naFBGN0037001Entrez, Source, GeneCards

CG6020 4385 0.071 0.0770 No

35 10208 naFBGN0015324Entrez, Source, GeneCards

Vha26 4402 0.071 0.0806 No

36 9994 naFBGN0004145Entrez, Source, GeneCards

Vha16 4442 0.070 0.0821 No

37 12172 naFBGN0035032Entrez, Source, GeneCards

CG4692 4636 0.063 0.0706 No

38 11434 naFBGN0033961Entrez, Source, GeneCards

CG12859 4945 0.054 0.0489 No

39 2567 naFBGN0031831Entrez, Source, GeneCards

CG11043 5021 0.051 0.0462 No

40 4768 naFBGN0032294Entrez, Source, GeneCards

CG6737 5198 0.046 0.0349 No

41 5961 naFBGN0028662Entrez, Source, GeneCards

VhaPPA1-1 5504 0.035 0.0123 No

42 11324 naFBGN0010426Entrez, Source, GeneCards

Vha14 5537 0.035 0.0120 No

43 10342 naFBGN0022764Entrez, Source, GeneCards

Sin3A 5892 0.023 -0.0155 No

44 8095 naFBGN0028670Entrez, Source, GeneCards

Vha100-2 5914 0.023 -0.0156 No

45 9459 naFBGN0035404Entrez, Source, GeneCards

CG12079 6366 0.009 -0.0521 No

46 5704 naFBGN0027660Entrez, Source, GeneCards

blot 6606 0.001 -0.0716 No

47 4572 naFBGN0030975Entrez, Source, CG7349 7062 -0.013 -0.1081 No

Page 5: Table: GSEA Results Summary

GeneCards

48 9550 naFBGN0039669Entrez, Source, GeneCards

CG2014 7323 -0.020 -0.1281 No

49 7770 naFBGN0028664Entrez, Source, GeneCards

VhaM9.7-1 7612 -0.030 -0.1497 No

50 1772 naFBGN0016687Entrez, Source, GeneCards

Nurf-38 7622 -0.030 -0.1484 No

51 7483 naFBGN0027779Entrez, Source, GeneCards

VhaSFD 7733 -0.033 -0.1552 No

52 9329 naFBGN0030610Entrez, Source, GeneCards

CG9065 7776 -0.034 -0.1563 No

53 9655 naFBGN0033636Entrez, Source, GeneCards

tou 8081 -0.045 -0.1782 No

54 301 naFBGN0031505Entrez, Source, GeneCards

CG12400 8136 -0.046 -0.1795 No

55 792 naFBGN0036518Entrez, Source, GeneCards

RhoGAP71E 8210 -0.049 -0.1822 No

56 6586 naFBGN0017566Entrez, Source, GeneCards

ND75 8282 -0.051 -0.1845 No

57 9293 naFBGN0016119Entrez, Source, GeneCards

ATPsyn-Cf6 8621 -0.062 -0.2080 No

58 9776 naFBGN0011227Entrez, Source, GeneCards

ox 8775 -0.069 -0.2159 No

59 9089 naFBGN0014028Entrez, Source, GeneCards

SdhB 8800 -0.070 -0.2131 No

60 7240 naFBGN0030718Entrez, Source, GeneCards

CG9172 9260 -0.087 -0.2449 No

61 11066 naFBGN0034576Entrez, Source, GeneCards

CG9350 9414 -0.093 -0.2511 No

62 11337 naFBGN0038224Entrez, Source, GeneCards

CG3321 9491 -0.096 -0.2508 No

63 10081 naFBGN0033020Entrez, Source, GeneCards

CG10396 9498 -0.096 -0.2447 No

Page 6: Table: GSEA Results Summary

64 4068 naFBGN0036568Entrez, Source, GeneCards

CG5389 9593 -0.100 -0.2457 No

65 9996 naFBGN0039830Entrez, Source, GeneCards

CG1746 9742 -0.106 -0.2506 No

66 8280 naFBGN0014391Entrez, Source, GeneCards

sun 9894 -0.114 -0.2552 No

67 11616 naFBGN0024288Entrez, Source, GeneCards

Sox100B 9986 -0.118 -0.2546 No

68 6925 naFBGN0032511Entrez, Source, GeneCards

CG9306 10241 -0.131 -0.2665 No

69 8824 naFBGN0031830Entrez, Source, GeneCards

CG11015 10435 -0.143 -0.2726 Yes

70 11063 naFBGN0034645Entrez, Source, GeneCards

CG10320 10510 -0.147 -0.2686 Yes

71 9107 naFBGN0015031Entrez, Source, GeneCards

cype 10574 -0.151 -0.2635 Yes

72 9857 naFBGN0020611Entrez, Source, GeneCards

Vha44 10595 -0.151 -0.2548 Yes

73 8549 naFBGN0005671Entrez, Source, GeneCards

Vha55 10656 -0.155 -0.2492 Yes

74 8813 naFBGN0031021Entrez, Source, GeneCards

CG12203 10783 -0.164 -0.2483 Yes

75 9754 naFBGN0016691Entrez, Source, GeneCards

Oscp 10851 -0.168 -0.2423 Yes

76 7479 naFBGN0010612Entrez, Source, GeneCards

l(2)06225 10946 -0.175 -0.2381 Yes

77 11505 naFBGN0025839Entrez, Source, GeneCards

CG3621 11130 -0.188 -0.2403 Yes

78 10199 naFBGN0030605Entrez, Source, GeneCards

CG5548 11308 -0.205 -0.2408 Yes

79 12255 naFBGN0026753Entrez, Source, GeneCards

Vha13 11489 -0.223 -0.2404 Yes

80 4510 naFBGN0011361Entrez, Source, mtacp1 11590 -0.235 -0.2325 Yes

Page 7: Table: GSEA Results Summary

GeneCards

81 7600 naFBGN0017567Entrez, Source, GeneCards

ND23 11685 -0.249 -0.2233 Yes

82 9058 naFBGN0019624Entrez, Source, GeneCards

CoVa 11759 -0.262 -0.2114 Yes

83 2479 naFBGN0021967Entrez, Source, GeneCards

Pdsw 11923 -0.293 -0.2048 Yes

84 3776 naFBGN0040529Entrez, Source, GeneCards

CG9603 11965 -0.303 -0.1875 Yes

85 3718 naFBGN0032222Entrez, Source, GeneCards

CG5037 11978 -0.305 -0.1676 Yes

86 3876 naFBGN0019957Entrez, Source, GeneCards

ND42 12011 -0.315 -0.1488 Yes

87 9957 naFBGN0034877Entrez, Source, GeneCards

CG17280 12036 -0.325 -0.1286 Yes

88 6704 naFBGN0030853Entrez, Source, GeneCards

CG5703 12060 -0.336 -0.1076 Yes

89 4814 naFBGN0032833Entrez, Source, GeneCards

CG10664 12070 -0.338 -0.0852 Yes

90 11841 naFBGN0020235Entrez, Source, GeneCards

ATPsyn-gamma 12077 -0.340 -0.0625 Yes

91 2273 naFBGN0011211Entrez, Source, GeneCards

blw 12081 -0.342 -0.0395 Yes

92 4647 naFBGN0019644Entrez, Source, GeneCards

ATPsyn-b 12153 -0.400 -0.0180 Yes

93 12013 naFBGN0016120Entrez, Source, GeneCards

ATPsyn-d 12154 -0.400 0.0093 Yes

Page 8: Table: GSEA Results Summary
Page 9: Table: GSEA Results Summary

Fig 2: 00190 Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: 00190: Random ES distribution Gene set null distribution of ES for 00190

Page 10: Table: GSEA Results Summary

DatasetMdata_gsea.indy_phenotype_file.cls#indy_10d_versus_wt_10d.indy_phenotype_file.cls#indy_10d_versus_wt_10d_repos

Phenotype indy_phenotype_file.cls#indy_10d_versus_wt_10d_repos

Upregulated in class indy_10d

GeneSet 00190

Enrichment Score (ES) 0.3966536

Normalized Enrichment Score (NES) 1.2841148

Nominal p-value 0.0898138

FDR q-value 0.5595008

FWER p-Value 1.0

Table: GSEA Results Summary

Fig 1: Enrichment plot: 00190

Page 11: Table: GSEA Results Summary

Profile of the Running ES Score & Positions of GeneSet Members on the Rank OrderedList

PROBE DESCRIPTION(from dataset) GENE SYMBOL GENE_TITLE

RANK INGENELIST

RANKMETRICSCORE

RUNNINGES

COREENRICHMENT

1 1050 naFBGN0015396Entrez, Source, GeneCards

jumu 39 1.440 0.0614 Yes

2 10081 naFBGN0033020Entrez, Source, GeneCards

CG10396 195 0.943 0.0909 Yes

3 11366 naFBGN0039651Entrez, Source, GeneCards

CG14508 315 0.810 0.1174 Yes

4 6995 naFBGN0037860Entrez, Source, GeneCards

CG6629 402 0.736 0.1433 Yes

5 8280 naFBGN0014391Entrez, Source, GeneCards

sun 498 0.666 0.1654 Yes

6 7479 naFBGN0010612Entrez, Source, GeneCards

l(2)06225 639 0.580 0.1799 Yes

7 8824 naFBGN0031830Entrez, Source, GeneCards

CG11015 906 0.458 0.1786 Yes

8 10818 naFBGN0033706Entrez, Source, GeneCards

CG13167 937 0.450 0.1963 Yes

9 11066 naFBGN0034576Entrez, Source, GeneCards

CG9350 944 0.448 0.2159 Yes

10 4068 naFBGN0036568Entrez, Source, GeneCards

CG5389 978 0.440 0.2329 Yes

11 2479 naFBGN0021967Entrez, Source, GeneCards

Pdsw 1051 0.420 0.2458 Yes

12 1772 naFBGN0016687Entrez, Source, GeneCards

Nurf-38 1056 0.419 0.2642 Yes

13 4747 naFBGN0031941Entrez, Source, GeneCards

CG7211 1223 0.381 0.2677 Yes

14 11063 naFBGN0034645Entrez, Source, CG10320 1230 0.380 0.2842 Yes

Table: GSEA details [plain text format]

Page 12: Table: GSEA Results Summary

GeneCards

15 2648 naFBGN0037579Entrez, Source, GeneCards

CG18193 1264 0.369 0.2981 Yes

16 9158 naFBGN0034169Entrez, Source, GeneCards

CG9013 1495 0.324 0.2937 Yes

17 7703 naFBGN0028665Entrez, Source, GeneCards

VhaAC39 1558 0.315 0.3027 Yes

18 4647 naFBGN0019644Entrez, Source, GeneCards

ATPsyn-b 1564 0.313 0.3164 Yes

19 9058 naFBGN0019624Entrez, Source, GeneCards

CoVa 1588 0.309 0.3283 Yes

20 9329 naFBGN0030610Entrez, Source, GeneCards

CG9065 1614 0.305 0.3399 Yes

21 10795 naFBGN0022097Entrez, Source, GeneCards

Vha36 1658 0.297 0.3497 Yes

22 6352 naFBGN0020367Entrez, Source, GeneCards

Vha68-2 1715 0.289 0.3581 Yes

23 5294 naFBGN0031771Entrez, Source, GeneCards

CG9140 1860 0.274 0.3585 Yes

24 976 naFBGN0032464Entrez, Source, GeneCards

CG5075 1942 0.265 0.3637 Yes

25 1832 naFBGN0036830Entrez, Source, GeneCards

CG14077 1999 0.258 0.3707 Yes

26 12255 naFBGN0026753Entrez, Source, GeneCards

Vha13 2074 0.249 0.3758 Yes

27 12172 naFBGN0035032Entrez, Source, GeneCards

CG4692 2150 0.241 0.3804 Yes

28 3718 naFBGN0032222Entrez, Source, GeneCards

CG5037 2203 0.236 0.3868 Yes

29 9776 naFBGN0011227Entrez, Source, GeneCards

ox 2212 0.235 0.3967 Yes

30 8618 naFBGN0039112Entrez, Source, GeneCards

CG10219 2730 0.192 0.3628 No

Page 13: Table: GSEA Results Summary

31 5266 naFBGN0021906Entrez, Source, GeneCards

RFeSP 2765 0.190 0.3685 No

32 2014 naFBGN0020368Entrez, Source, GeneCards

Vha68-1 2849 0.184 0.3699 No

33 4089 naFBGN0011455Entrez, Source, GeneCards

l(3)neo18 2894 0.182 0.3745 No

34 3776 naFBGN0040529Entrez, Source, GeneCards

CG9603 2940 0.179 0.3788 No

35 301 naFBGN0031505Entrez, Source, GeneCards

CG12400 2994 0.175 0.3823 No

36 9929 naFBGN0010217Entrez, Source, GeneCards

ATPsyn-beta 3024 0.174 0.3877 No

37 8813 naFBGN0031021Entrez, Source, GeneCards

CG12203 3116 0.168 0.3877 No

38 9107 naFBGN0015031Entrez, Source, GeneCards

cype 3449 0.148 0.3671 No

39 9957 naFBGN0034877Entrez, Source, GeneCards

CG17280 3614 0.139 0.3599 No

40 4510 naFBGN0011361Entrez, Source, GeneCards

mtacp1 3774 0.131 0.3527 No

41 6586 naFBGN0017566Entrez, Source, GeneCards

ND75 3788 0.130 0.3575 No

42 1460 naFBGN0037001Entrez, Source, GeneCards

CG6020 3836 0.128 0.3593 No

43 5704 naFBGN0027660Entrez, Source, GeneCards

blot 3865 0.127 0.3627 No

44 11337 naFBGN0038224Entrez, Source, GeneCards

CG3321 3996 0.120 0.3574 No

45 2936 naFBGN0030733Entrez, Source, GeneCards

CG3560 4229 0.109 0.3432 No

46 9752 naFBGN0038295Entrez, Source, GeneCards

Gyc88E 4612 0.091 0.3159 No

47 11434 naFBGN0033961Entrez, Source, CG12859 4743 0.086 0.3091 No

Page 14: Table: GSEA Results Summary

GeneCards

48 11841 naFBGN0020235Entrez, Source, GeneCards

ATPsyn-gamma 4843 0.082 0.3046 No

49 9558 naFBGN0028671Entrez, Source, GeneCards

Vha100-1 4956 0.077 0.2989 No

50 8425 naFBGN0031684Entrez, Source, GeneCards

CG8680 4975 0.076 0.3008 No

51 11616 naFBGN0024288Entrez, Source, GeneCards

Sox100B 4976 0.076 0.3042 No

52 8795 naFBGN0029971Entrez, Source, GeneCards

CG18624 5227 0.066 0.2867 No

53 10208 naFBGN0015324Entrez, Source, GeneCards

Vha26 5240 0.066 0.2886 No

54 10390 naFBGN0039909Entrez, Source, GeneCards

CG1970 5285 0.063 0.2879 No

55 2506 naFBGN0031228Entrez, Source, GeneCards

CG11455 5506 0.053 0.2722 No

56 2567 naFBGN0031831Entrez, Source, GeneCards

CG11043 5551 0.052 0.2709 No

57 4572 naFBGN0030975Entrez, Source, GeneCards

CG7349 5785 0.043 0.2537 No

58 10342 naFBGN0022764Entrez, Source, GeneCards

Sin3A 6808 0.001 0.1698 No

59 9293 naFBGN0016119Entrez, Source, GeneCards

ATPsyn-Cf6 7361 -0.021 0.1254 No

60 11324 naFBGN0010426Entrez, Source, GeneCards

Vha14 7507 -0.027 0.1147 No

61 9550 naFBGN0039669Entrez, Source, GeneCards

CG2014 7550 -0.029 0.1125 No

62 11505 naFBGN0025839Entrez, Source, GeneCards

CG3621 7560 -0.030 0.1131 No

63 5961 naFBGN0028662Entrez, Source, GeneCards

VhaPPA1-1 7617 -0.032 0.1099 No

Page 15: Table: GSEA Results Summary

64 792 naFBGN0036518Entrez, Source, GeneCards

RhoGAP71E 7651 -0.033 0.1087 No

65 9754 naFBGN0016691Entrez, Source, GeneCards

Oscp 7985 -0.047 0.0835 No

66 6704 naFBGN0030853Entrez, Source, GeneCards

CG5703 8032 -0.048 0.0819 No

67 7483 naFBGN0027779Entrez, Source, GeneCards

VhaSFD 8350 -0.062 0.0586 No

68 4768 naFBGN0032294Entrez, Source, GeneCards

CG6737 8831 -0.083 0.0229 No

69 7770 naFBGN0028664Entrez, Source, GeneCards

VhaM9.7-1 8932 -0.089 0.0187 No

70 7240 naFBGN0030718Entrez, Source, GeneCards

CG9172 9057 -0.095 0.0127 No

71 9996 naFBGN0039830Entrez, Source, GeneCards

CG1746 9092 -0.096 0.0143 No

72 3876 naFBGN0019957Entrez, Source, GeneCards

ND42 9233 -0.104 0.0074 No

73 2881 naFBGN0034938Entrez, Source, GeneCards

CG3803 9371 -0.113 0.0013 No

74 3936 naFBGN0029888Entrez, Source, GeneCards

CG3192 9377 -0.114 0.0059 No

75 11688 naFBGN0033393Entrez, Source, GeneCards

CG8029 9433 -0.117 0.0067 No

76 9655 naFBGN0033636Entrez, Source, GeneCards

tou 9640 -0.130 -0.0044 No

77 4814 naFBGN0032833Entrez, Source, GeneCards

CG10664 9660 -0.132 -0.0001 No

78 9471 naFBGN0035600Entrez, Source, GeneCards

CG4769 9697 -0.134 0.0030 No

79 2180 naFBGN0039576Entrez, Source, GeneCards

CG17856 9813 -0.142 -0.0001 No

80 8549 naFBGN0005671Entrez, Source, Vha55 9875 -0.146 0.0014 No

Page 16: Table: GSEA Results Summary

GeneCards

81 2273 naFBGN0011211Entrez, Source, GeneCards

blw 10010 -0.156 -0.0026 No

82 10199 naFBGN0030605Entrez, Source, GeneCards

CG5548 10257 -0.174 -0.0150 No

83 10210 naFBGN0037172Entrez, Source, GeneCards

CG6914 10451 -0.191 -0.0223 No

84 10586 naFBGN0040773Entrez, Source, GeneCards

CG2249 10522 -0.197 -0.0192 No

85 12013 naFBGN0016120Entrez, Source, GeneCards

ATPsyn-d 11178 -0.263 -0.0612 No

86 8462 naFBGN0032373Entrez, Source, GeneCards

CG12602 11317 -0.282 -0.0599 No

87 6925 naFBGN0032511Entrez, Source, GeneCards

CG9306 11422 -0.297 -0.0551 No

88 7600 naFBGN0017567Entrez, Source, GeneCards

ND23 11474 -0.309 -0.0454 No

89 8095 naFBGN0028670Entrez, Source, GeneCards

Vha100-2 11908 -0.430 -0.0617 No

90 9857 naFBGN0020611Entrez, Source, GeneCards

Vha44 11951 -0.450 -0.0450 No

91 9089 naFBGN0014028Entrez, Source, GeneCards

SdhB 12031 -0.488 -0.0296 No

92 9994 naFBGN0004145Entrez, Source, GeneCards

Vha16 12091 -0.537 -0.0104 No

93 9459 naFBGN0035404Entrez, Source, GeneCards

CG12079 12103 -0.553 0.0135 No

Page 17: Table: GSEA Results Summary
Page 18: Table: GSEA Results Summary

Fig 2: 00190 Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: 00190: Random ES distribution Gene set null distribution of ES for 00190

Page 19: Table: GSEA Results Summary

DatasetMdata_gsea.indy_phenotype_file.cls#indy_20d_versus_wt_20d.indy_phenotype_file.cls#indy_20d_versus_wt_20d_repos

Phenotype indy_phenotype_file.cls#indy_20d_versus_wt_20d_repos

Upregulated in class wt_20d

GeneSet 00190

Enrichment Score (ES) -0.5345698

Normalized Enrichment Score (NES) -1.9106132

Nominal p-value 0.0

FDR q-value 0.005429251

FWER p-Value 0.017

Table: GSEA Results Summary

Fig 1: Enrichment plot: 00190

Page 20: Table: GSEA Results Summary

Profile of the Running ES Score & Positions of GeneSet Members on the Rank OrderedList

PROBE DESCRIPTION(from dataset) GENE SYMBOL GENE_TITLE

RANK INGENELIST

RANKMETRICSCORE

RUNNINGES

COREENRICHMENT

1 6586 naFBGN0017566Entrez, Source, GeneCards

ND75 123 0.429 0.0169 No

2 7483 naFBGN0027779Entrez, Source, GeneCards

VhaSFD 265 0.313 0.0250 No

3 4647 naFBGN0019644Entrez, Source, GeneCards

ATPsyn-b 682 0.211 0.0041 No

4 4572 naFBGN0030975Entrez, Source, GeneCards

CG7349 839 0.190 0.0032 No

5 10795 naFBGN0022097Entrez, Source, GeneCards

Vha36 919 0.182 0.0081 No

6 9558 naFBGN0028671Entrez, Source, GeneCards

Vha100-1 1275 0.153 -0.0114 No

7 10342 naFBGN0022764Entrez, Source, GeneCards

Sin3A 1383 0.147 -0.0109 No

8 2881 naFBGN0034938Entrez, Source, GeneCards

CG3803 1513 0.139 -0.0128 No

9 9471 naFBGN0035600Entrez, Source, GeneCards

CG4769 1830 0.122 -0.0310 No

10 8824 naFBGN0031830Entrez, Source, GeneCards

CG11015 2502 0.093 -0.0803 No

11 9293 naFBGN0016119Entrez, Source, GeneCards

ATPsyn-Cf6 2531 0.092 -0.0768 No

12 2014 naFBGN0020368Entrez, Source, GeneCards

Vha68-1 2788 0.083 -0.0927 No

13 9089 naFBGN0014028Entrez, Source, GeneCards

SdhB 2925 0.078 -0.0990 No

14 12255 naFBGN0026753Entrez, Source, Vha13 3062 0.073 -0.1056 No

Table: GSEA details [plain text format]

Page 21: Table: GSEA Results Summary

GeneCards

15 5704 naFBGN0027660Entrez, Source, GeneCards

blot 3380 0.063 -0.1276 No

16 9994 naFBGN0004145Entrez, Source, GeneCards

Vha16 3934 0.047 -0.1701 No

17 7770 naFBGN0028664Entrez, Source, GeneCards

VhaM9.7-1 4347 0.036 -0.2017 No

18 9752 naFBGN0038295Entrez, Source, GeneCards

Gyc88E 4564 0.030 -0.2175 No

19 12172 naFBGN0035032Entrez, Source, GeneCards

CG4692 4644 0.028 -0.2222 No

20 4747 naFBGN0031941Entrez, Source, GeneCards

CG7211 4685 0.027 -0.2238 No

21 9996 naFBGN0039830Entrez, Source, GeneCards

CG1746 4990 0.020 -0.2475 No

22 11337 naFBGN0038224Entrez, Source, GeneCards

CG3321 5384 0.009 -0.2792 No

23 10208 naFBGN0015324Entrez, Source, GeneCards

Vha26 5444 0.008 -0.2835 No

24 792 naFBGN0036518Entrez, Source, GeneCards

RhoGAP71E 5451 0.008 -0.2836 No

25 11366 naFBGN0039651Entrez, Source, GeneCards

CG14508 5970 -0.006 -0.3257 No

26 9655 naFBGN0033636Entrez, Source, GeneCards

tou 6227 -0.012 -0.3460 No

27 7240 naFBGN0030718Entrez, Source, GeneCards

CG9172 6506 -0.019 -0.3676 No

28 5961 naFBGN0028662Entrez, Source, GeneCards

VhaPPA1-1 7310 -0.042 -0.4309 No

29 10586 naFBGN0040773Entrez, Source, GeneCards

CG2249 7559 -0.049 -0.4482 No

30 11324 naFBGN0010426Entrez, Source, GeneCards

Vha14 7742 -0.054 -0.4598 No

Page 22: Table: GSEA Results Summary

31 11616 naFBGN0024288Entrez, Source, GeneCards

Sox100B 8177 -0.068 -0.4911 No

32 1050 naFBGN0015396Entrez, Source, GeneCards

jumu 8250 -0.071 -0.4926 No

33 11841 naFBGN0020235Entrez, Source, GeneCards

ATPsyn-gamma 8287 -0.072 -0.4910 No

34 8618 naFBGN0039112Entrez, Source, GeneCards

CG10219 8349 -0.075 -0.4913 No

35 9857 naFBGN0020611Entrez, Source, GeneCards

Vha44 8490 -0.079 -0.4978 No

36 2273 naFBGN0011211Entrez, Source, GeneCards

blw 8517 -0.080 -0.4949 No

37 6925 naFBGN0032511Entrez, Source, GeneCards

CG9306 8623 -0.084 -0.4983 No

38 6352 naFBGN0020367Entrez, Source, GeneCards

Vha68-2 8787 -0.089 -0.5061 No

39 12013 naFBGN0016120Entrez, Source, GeneCards

ATPsyn-d 8948 -0.094 -0.5133 No

40 4510 naFBGN0011361Entrez, Source, GeneCards

mtacp1 9208 -0.104 -0.5280 Yes

41 3936 naFBGN0029888Entrez, Source, GeneCards

CG3192 9210 -0.105 -0.5215 Yes

42 8425 naFBGN0031684Entrez, Source, GeneCards

CG8680 9319 -0.110 -0.5235 Yes

43 8795 naFBGN0029971Entrez, Source, GeneCards

CG18624 9421 -0.114 -0.5246 Yes

44 1772 naFBGN0016687Entrez, Source, GeneCards

Nurf-38 9428 -0.114 -0.5179 Yes

45 11505 naFBGN0025839Entrez, Source, GeneCards

CG3621 9448 -0.115 -0.5122 Yes

46 2567 naFBGN0031831Entrez, Source, GeneCards

CG11043 9467 -0.117 -0.5064 Yes

47 3718 naFBGN0032222Entrez, Source, CG5037 9498 -0.118 -0.5015 Yes

Page 23: Table: GSEA Results Summary

GeneCards

48 9329 naFBGN0030610Entrez, Source, GeneCards

CG9065 9646 -0.123 -0.5058 Yes

49 11688 naFBGN0033393Entrez, Source, GeneCards

CG8029 9846 -0.134 -0.5137 Yes

50 9776 naFBGN0011227Entrez, Source, GeneCards

ox 9864 -0.134 -0.5067 Yes

51 2479 naFBGN0021967Entrez, Source, GeneCards

Pdsw 10050 -0.145 -0.5128 Yes

52 8549 naFBGN0005671Entrez, Source, GeneCards

Vha55 10149 -0.151 -0.5113 Yes

53 9550 naFBGN0039669Entrez, Source, GeneCards

CG2014 10197 -0.153 -0.5055 Yes

54 9058 naFBGN0019624Entrez, Source, GeneCards

CoVa 10380 -0.166 -0.5101 Yes

55 8280 naFBGN0014391Entrez, Source, GeneCards

sun 10439 -0.170 -0.5042 Yes

56 4068 naFBGN0036568Entrez, Source, GeneCards

CG5389 10459 -0.171 -0.4950 Yes

57 2506 naFBGN0031228Entrez, Source, GeneCards

CG11455 10527 -0.175 -0.4895 Yes

58 11434 naFBGN0033961Entrez, Source, GeneCards

CG12859 10584 -0.180 -0.4828 Yes

59 4089 naFBGN0011455Entrez, Source, GeneCards

l(3)neo18 10631 -0.184 -0.4750 Yes

60 4768 naFBGN0032294Entrez, Source, GeneCards

CG6737 10718 -0.190 -0.4701 Yes

61 11063 naFBGN0034645Entrez, Source, GeneCards

CG10320 10780 -0.194 -0.4629 Yes

62 10390 naFBGN0039909Entrez, Source, GeneCards

CG1970 10788 -0.195 -0.4512 Yes

63 2936 naFBGN0030733Entrez, Source, GeneCards

CG3560 10844 -0.200 -0.4431 Yes

Page 24: Table: GSEA Results Summary

64 11066 naFBGN0034576Entrez, Source, GeneCards

CG9350 10961 -0.212 -0.4394 Yes

65 9929 naFBGN0010217Entrez, Source, GeneCards

ATPsyn-beta 10999 -0.215 -0.4289 Yes

66 9459 naFBGN0035404Entrez, Source, GeneCards

CG12079 11024 -0.217 -0.4172 Yes

67 9107 naFBGN0015031Entrez, Source, GeneCards

cype 11071 -0.221 -0.4071 Yes

68 7703 naFBGN0028665Entrez, Source, GeneCards

VhaAC39 11088 -0.224 -0.3943 Yes

69 301 naFBGN0031505Entrez, Source, GeneCards

CG12400 11159 -0.232 -0.3855 Yes

70 6704 naFBGN0030853Entrez, Source, GeneCards

CG5703 11283 -0.250 -0.3799 Yes

71 3776 naFBGN0040529Entrez, Source, GeneCards

CG9603 11306 -0.254 -0.3657 Yes

72 10199 naFBGN0030605Entrez, Source, GeneCards

CG5548 11308 -0.254 -0.3498 Yes

73 2648 naFBGN0037579Entrez, Source, GeneCards

CG18193 11329 -0.258 -0.3353 Yes

74 3876 naFBGN0019957Entrez, Source, GeneCards

ND42 11364 -0.263 -0.3215 Yes

75 1832 naFBGN0036830Entrez, Source, GeneCards

CG14077 11368 -0.264 -0.3052 Yes

76 9957 naFBGN0034877Entrez, Source, GeneCards

CG17280 11392 -0.267 -0.2903 Yes

77 2180 naFBGN0039576Entrez, Source, GeneCards

CG17856 11405 -0.269 -0.2744 Yes

78 9158 naFBGN0034169Entrez, Source, GeneCards

CG9013 11423 -0.272 -0.2587 Yes

79 8095 naFBGN0028670Entrez, Source, GeneCards

Vha100-2 11434 -0.274 -0.2423 Yes

80 5266 naFBGN0021906Entrez, Source, RFeSP 11456 -0.278 -0.2265 Yes

Page 25: Table: GSEA Results Summary

GeneCards

81 6995 naFBGN0037860Entrez, Source, GeneCards

CG6629 11579 -0.299 -0.2178 Yes

82 8813 naFBGN0031021Entrez, Source, GeneCards

CG12203 11634 -0.310 -0.2027 Yes

83 8462 naFBGN0032373Entrez, Source, GeneCards

CG12602 11667 -0.317 -0.1854 Yes

84 10818 naFBGN0033706Entrez, Source, GeneCards

CG13167 11671 -0.317 -0.1657 Yes

85 10081 naFBGN0033020Entrez, Source, GeneCards

CG10396 11712 -0.327 -0.1484 Yes

86 9754 naFBGN0016691Entrez, Source, GeneCards

Oscp 11713 -0.327 -0.1279 Yes

87 7600 naFBGN0017567Entrez, Source, GeneCards

ND23 11723 -0.330 -0.1079 Yes

88 976 naFBGN0032464Entrez, Source, GeneCards

CG5075 11770 -0.344 -0.0900 Yes

89 5294 naFBGN0031771Entrez, Source, GeneCards

CG9140 11783 -0.347 -0.0692 Yes

90 7479 naFBGN0010612Entrez, Source, GeneCards

l(2)06225 11791 -0.349 -0.0478 Yes

91 1460 naFBGN0037001Entrez, Source, GeneCards

CG6020 11886 -0.378 -0.0317 Yes

92 10210 naFBGN0037172Entrez, Source, GeneCards

CG6914 12039 -0.440 -0.0166 Yes

93 4814 naFBGN0032833Entrez, Source, GeneCards

CG10664 12170 -0.560 0.0080 Yes

Page 26: Table: GSEA Results Summary
Page 27: Table: GSEA Results Summary

Fig 2: 00190 Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: 00190: Random ES distribution Gene set null distribution of ES for 00190

Page 28: Table: GSEA Results Summary

DatasetMdata_gsea.indy_phenotype_file.cls#indy_30d_versus_wt_30d.indy_phenotype_file.cls#indy_30d_versus_wt_30d_repos

Phenotype indy_phenotype_file.cls#indy_30d_versus_wt_30d_repos

Upregulated in class wt_30d

GeneSet 00190

Enrichment Score (ES) -0.57133025

Normalized Enrichment Score (NES) -1.8790311

Nominal p-value 0.0

FDR q-value 0.00629876

FWER p-Value 0.0090

Table: GSEA Results Summary

Fig 1: Enrichment plot: 00190

Page 29: Table: GSEA Results Summary

Profile of the Running ES Score & Positions of GeneSet Members on the Rank OrderedList

PROBE DESCRIPTION(from dataset) GENE SYMBOL GENE_TITLE

RANK INGENELIST

RANKMETRICSCORE

RUNNINGES

COREENRICHMENT

1 8425 naFBGN0031684Entrez, Source, GeneCards

CG8680 174 0.463 0.0066 No

2 10795 naFBGN0022097Entrez, Source, GeneCards

Vha36 318 0.376 0.0118 No

3 10342 naFBGN0022764Entrez, Source, GeneCards

Sin3A 644 0.290 -0.0017 No

4 9994 naFBGN0004145Entrez, Source, GeneCards

Vha16 842 0.254 -0.0064 No

5 11324 naFBGN0010426Entrez, Source, GeneCards

Vha14 1282 0.202 -0.0334 No

6 9558 naFBGN0028671Entrez, Source, GeneCards

Vha100-1 1478 0.187 -0.0409 No

7 5294 naFBGN0031771Entrez, Source, GeneCards

CG9140 2059 0.145 -0.0820 No

8 11066 naFBGN0034576Entrez, Source, GeneCards

CG9350 2127 0.141 -0.0812 No

9 8824 naFBGN0031830Entrez, Source, GeneCards

CG11015 2913 0.099 -0.1412 No

10 9107 naFBGN0015031Entrez, Source, GeneCards

cype 2942 0.098 -0.1391 No

11 7483 naFBGN0027779Entrez, Source, GeneCards

VhaSFD 3006 0.095 -0.1399 No

12 9776 naFBGN0011227Entrez, Source, GeneCards

ox 3256 0.085 -0.1566 No

13 4768 naFBGN0032294Entrez, Source, GeneCards

CG6737 3307 0.083 -0.1569 No

14 301 naFBGN0031505Entrez, Source, CG12400 3945 0.056 -0.2068 No

Table: GSEA details [plain text format]

Page 30: Table: GSEA Results Summary

GeneCards

15 11616 naFBGN0024288Entrez, Source, GeneCards

Sox100B 4306 0.041 -0.2345 No

16 8095 naFBGN0028670Entrez, Source, GeneCards

Vha100-2 4336 0.040 -0.2350 No

17 10208 naFBGN0015324Entrez, Source, GeneCards

Vha26 4384 0.039 -0.2371 No

18 10390 naFBGN0039909Entrez, Source, GeneCards

CG1970 4541 0.033 -0.2484 No

19 12172 naFBGN0035032Entrez, Source, GeneCards

CG4692 4608 0.031 -0.2525 No

20 12255 naFBGN0026753Entrez, Source, GeneCards

Vha13 4737 0.026 -0.2618 No

21 9089 naFBGN0014028Entrez, Source, GeneCards

SdhB 4774 0.025 -0.2636 No

22 1832 naFBGN0036830Entrez, Source, GeneCards

CG14077 4846 0.022 -0.2685 No

23 8795 naFBGN0029971Entrez, Source, GeneCards

CG18624 5183 0.010 -0.2956 No

24 7703 naFBGN0028665Entrez, Source, GeneCards

VhaAC39 5566 -0.004 -0.3268 No

25 2567 naFBGN0031831Entrez, Source, GeneCards

CG11043 5827 -0.013 -0.3476 No

26 2506 naFBGN0031228Entrez, Source, GeneCards

CG11455 5839 -0.013 -0.3479 No

27 4068 naFBGN0036568Entrez, Source, GeneCards

CG5389 5875 -0.015 -0.3501 No

28 9329 naFBGN0030610Entrez, Source, GeneCards

CG9065 5962 -0.017 -0.3564 No

29 9655 naFBGN0033636Entrez, Source, GeneCards

tou 6016 -0.020 -0.3598 No

30 3776 naFBGN0040529Entrez, Source, GeneCards

CG9603 6779 -0.047 -0.4203 No

Page 31: Table: GSEA Results Summary

31 11063 naFBGN0034645Entrez, Source, GeneCards

CG10320 6879 -0.050 -0.4262 No

32 792 naFBGN0036518Entrez, Source, GeneCards

RhoGAP71E 7237 -0.064 -0.4526 No

33 9293 naFBGN0016119Entrez, Source, GeneCards

ATPsyn-Cf6 7400 -0.069 -0.4628 No

34 5704 naFBGN0027660Entrez, Source, GeneCards

blot 7430 -0.071 -0.4620 No

35 5961 naFBGN0028662Entrez, Source, GeneCards

VhaPPA1-1 7519 -0.075 -0.4658 No

36 4647 naFBGN0019644Entrez, Source, GeneCards

ATPsyn-b 7555 -0.076 -0.4653 No

37 9752 naFBGN0038295Entrez, Source, GeneCards

Gyc88E 7815 -0.086 -0.4826 No

38 8813 naFBGN0031021Entrez, Source, GeneCards

CG12203 7980 -0.093 -0.4919 No

39 976 naFBGN0032464Entrez, Source, GeneCards

CG5075 8610 -0.123 -0.5380 No

40 6704 naFBGN0030853Entrez, Source, GeneCards

CG5703 8780 -0.131 -0.5460 No

41 9058 naFBGN0019624Entrez, Source, GeneCards

CoVa 8836 -0.133 -0.5445 No

42 7479 naFBGN0010612Entrez, Source, GeneCards

l(2)06225 8876 -0.135 -0.5416 No

43 4572 naFBGN0030975Entrez, Source, GeneCards

CG7349 8910 -0.137 -0.5381 No

44 6352 naFBGN0020367Entrez, Source, GeneCards

Vha68-2 9039 -0.144 -0.5421 No

45 3718 naFBGN0032222Entrez, Source, GeneCards

CG5037 9198 -0.153 -0.5482 No

46 9471 naFBGN0035600Entrez, Source, GeneCards

CG4769 9429 -0.166 -0.5596 No

47 9550 naFBGN0039669Entrez, Source, CG2014 9507 -0.171 -0.5582 No

Page 32: Table: GSEA Results Summary

GeneCards

48 7240 naFBGN0030718Entrez, Source, GeneCards

CG9172 9570 -0.175 -0.5554 No

49 2881 naFBGN0034938Entrez, Source, GeneCards

CG3803 9675 -0.182 -0.5557 No

50 7600 naFBGN0017567Entrez, Source, GeneCards

ND23 9703 -0.183 -0.5496 No

51 11337 naFBGN0038224Entrez, Source, GeneCards

CG3321 9960 -0.204 -0.5615 Yes

52 9957 naFBGN0034877Entrez, Source, GeneCards

CG17280 10015 -0.209 -0.5565 Yes

53 7770 naFBGN0028664Entrez, Source, GeneCards

VhaM9.7-1 10197 -0.223 -0.5613 Yes

54 2014 naFBGN0020368Entrez, Source, GeneCards

Vha68-1 10201 -0.223 -0.5514 Yes

55 9158 naFBGN0034169Entrez, Source, GeneCards

CG9013 10226 -0.226 -0.5432 Yes

56 11688 naFBGN0033393Entrez, Source, GeneCards

CG8029 10335 -0.236 -0.5414 Yes

57 9857 naFBGN0020611Entrez, Source, GeneCards

Vha44 10342 -0.237 -0.5312 Yes

58 8280 naFBGN0014391Entrez, Source, GeneCards

sun 10371 -0.239 -0.5227 Yes

59 1050 naFBGN0015396Entrez, Source, GeneCards

jumu 10441 -0.245 -0.5173 Yes

60 2479 naFBGN0021967Entrez, Source, GeneCards

Pdsw 10516 -0.252 -0.5120 Yes

61 8462 naFBGN0032373Entrez, Source, GeneCards

CG12602 10528 -0.254 -0.5015 Yes

62 6925 naFBGN0032511Entrez, Source, GeneCards

CG9306 10593 -0.261 -0.4949 Yes

63 4747 naFBGN0031941Entrez, Source, GeneCards

CG7211 10608 -0.263 -0.4842 Yes

Page 33: Table: GSEA Results Summary

64 3876 naFBGN0019957Entrez, Source, GeneCards

ND42 10651 -0.268 -0.4756 Yes

65 4510 naFBGN0011361Entrez, Source, GeneCards

mtacp1 10733 -0.279 -0.4696 Yes

66 3936 naFBGN0029888Entrez, Source, GeneCards

CG3192 10813 -0.291 -0.4630 Yes

67 9929 naFBGN0010217Entrez, Source, GeneCards

ATPsyn-beta 10815 -0.291 -0.4499 Yes

68 5266 naFBGN0021906Entrez, Source, GeneCards

RFeSP 10827 -0.294 -0.4375 Yes

69 6586 naFBGN0017566Entrez, Source, GeneCards

ND75 10887 -0.303 -0.4287 Yes

70 10586 naFBGN0040773Entrez, Source, GeneCards

CG2249 10891 -0.304 -0.4152 Yes

71 8549 naFBGN0005671Entrez, Source, GeneCards

Vha55 10963 -0.315 -0.4068 Yes

72 11505 naFBGN0025839Entrez, Source, GeneCards

CG3621 11014 -0.323 -0.3963 Yes

73 1772 naFBGN0016687Entrez, Source, GeneCards

Nurf-38 11094 -0.340 -0.3875 Yes

74 9459 naFBGN0035404Entrez, Source, GeneCards

CG12079 11280 -0.381 -0.3855 Yes

75 11434 naFBGN0033961Entrez, Source, GeneCards

CG12859 11288 -0.383 -0.3688 Yes

76 11841 naFBGN0020235Entrez, Source, GeneCards

ATPsyn-gamma 11413 -0.419 -0.3600 Yes

77 4089 naFBGN0011455Entrez, Source, GeneCards

l(3)neo18 11464 -0.431 -0.3447 Yes

78 2180 naFBGN0039576Entrez, Source, GeneCards

CG17856 11493 -0.439 -0.3272 Yes

79 2648 naFBGN0037579Entrez, Source, GeneCards

CG18193 11495 -0.442 -0.3073 Yes

80 10210 naFBGN0037172Entrez, Source, CG6914 11545 -0.454 -0.2908 Yes

Page 34: Table: GSEA Results Summary

GeneCards

81 2273 naFBGN0011211Entrez, Source, GeneCards

blw 11561 -0.462 -0.2712 Yes

82 9754 naFBGN0016691Entrez, Source, GeneCards

Oscp 11590 -0.473 -0.2521 Yes

83 10199 naFBGN0030605Entrez, Source, GeneCards

CG5548 11668 -0.503 -0.2357 Yes

84 9996 naFBGN0039830Entrez, Source, GeneCards

CG1746 11689 -0.514 -0.2142 Yes

85 6995 naFBGN0037860Entrez, Source, GeneCards

CG6629 11734 -0.535 -0.1936 Yes

86 2936 naFBGN0030733Entrez, Source, GeneCards

CG3560 11755 -0.543 -0.1707 Yes

87 10818 naFBGN0033706Entrez, Source, GeneCards

CG13167 11845 -0.578 -0.1519 Yes

88 1460 naFBGN0037001Entrez, Source, GeneCards

CG6020 11889 -0.605 -0.1282 Yes

89 10081 naFBGN0033020Entrez, Source, GeneCards

CG10396 11940 -0.641 -0.1033 Yes

90 8618 naFBGN0039112Entrez, Source, GeneCards

CG10219 11957 -0.651 -0.0752 Yes

91 4814 naFBGN0032833Entrez, Source, GeneCards

CG10664 11986 -0.677 -0.0470 Yes

92 11366 naFBGN0039651Entrez, Source, GeneCards

CG14508 12064 -0.742 -0.0198 Yes

93 12013 naFBGN0016120Entrez, Source, GeneCards

ATPsyn-d 12118 -0.806 0.0122 Yes

Page 35: Table: GSEA Results Summary
Page 36: Table: GSEA Results Summary

Fig 2: 00190 Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: 00190: Random ES distribution Gene set null distribution of ES for 00190

Page 37: Table: GSEA Results Summary

DatasetMdata_gsea.indy_phenotype_file.cls#indy_40d_versus_wt_40d.indy_phenotype_file.cls#indy_40d_versus_wt_40d_repos

Phenotype indy_phenotype_file.cls#indy_40d_versus_wt_40d_repos

Upregulated in class wt_40d

GeneSet 00190

Enrichment Score (ES) -0.62004805

Normalized Enrichment Score (NES) -2.5460632

Nominal p-value 0.0

FDR q-value 0.0

FWER p-Value 0.0

Table: GSEA Results Summary

Fig 1: Enrichment plot: 00190

Page 38: Table: GSEA Results Summary

Profile of the Running ES Score & Positions of GeneSet Members on the Rank OrderedList

PROBE DESCRIPTION(from dataset) GENE SYMBOL GENE_TITLE

RANK INGENELIST

RANKMETRICSCORE

RUNNINGES

COREENRICHMENT

1 2648 naFBGN0037579Entrez, Source, GeneCards

CG18193 185 0.706 0.0136 No

2 1050 naFBGN0015396Entrez, Source, GeneCards

jumu 477 0.428 0.0071 No

3 976 naFBGN0032464Entrez, Source, GeneCards

CG5075 481 0.426 0.0242 No

4 4068 naFBGN0036568Entrez, Source, GeneCards

CG5389 498 0.416 0.0399 No

5 6995 naFBGN0037860Entrez, Source, GeneCards

CG6629 717 0.339 0.0358 No

6 4747 naFBGN0031941Entrez, Source, GeneCards

CG7211 808 0.316 0.0413 No

7 9089 naFBGN0014028Entrez, Source, GeneCards

SdhB 1476 0.227 -0.0042 No

8 7703 naFBGN0028665Entrez, Source, GeneCards

VhaAC39 1505 0.224 0.0026 No

9 12255 naFBGN0026753Entrez, Source, GeneCards

Vha13 1738 0.204 -0.0081 No

10 7483 naFBGN0027779Entrez, Source, GeneCards

VhaSFD 2112 0.177 -0.0316 No

11 2881 naFBGN0034938Entrez, Source, GeneCards

CG3803 2329 0.164 -0.0426 No

12 6925 naFBGN0032511Entrez, Source, GeneCards

CG9306 2630 0.149 -0.0612 No

13 11616 naFBGN0024288Entrez, Source, GeneCards

Sox100B 3485 0.111 -0.1268 No

14 10818 naFBGN0033706Entrez, Source, CG13167 4563 0.071 -0.2124 No

Table: GSEA details [plain text format]

Page 39: Table: GSEA Results Summary

GeneCards

15 9558 naFBGN0028671Entrez, Source, GeneCards

Vha100-1 4636 0.068 -0.2155 No

16 5961 naFBGN0028662Entrez, Source, GeneCards

VhaPPA1-1 4684 0.066 -0.2167 No

17 5704 naFBGN0027660Entrez, Source, GeneCards

blot 4735 0.064 -0.2182 No

18 2273 naFBGN0011211Entrez, Source, GeneCards

blw 4786 0.063 -0.2197 No

19 2567 naFBGN0031831Entrez, Source, GeneCards

CG11043 5480 0.040 -0.2750 No

20 10210 naFBGN0037172Entrez, Source, GeneCards

CG6914 5708 0.032 -0.2924 No

21 3776 naFBGN0040529Entrez, Source, GeneCards

CG9603 5748 0.030 -0.2943 No

22 9293 naFBGN0016119Entrez, Source, GeneCards

ATPsyn-Cf6 5976 0.022 -0.3121 No

23 2014 naFBGN0020368Entrez, Source, GeneCards

Vha68-1 6211 0.014 -0.3307 No

24 2506 naFBGN0031228Entrez, Source, GeneCards

CG11455 6339 0.010 -0.3408 No

25 10390 naFBGN0039909Entrez, Source, GeneCards

CG1970 6913 -0.010 -0.3874 No

26 6586 naFBGN0017566Entrez, Source, GeneCards

ND75 7130 -0.018 -0.4044 No

27 9994 naFBGN0004145Entrez, Source, GeneCards

Vha16 7486 -0.030 -0.4324 No

28 3718 naFBGN0032222Entrez, Source, GeneCards

CG5037 7540 -0.032 -0.4354 No

29 792 naFBGN0036518Entrez, Source, GeneCards

RhoGAP71E 7619 -0.035 -0.4404 No

30 9655 naFBGN0033636Entrez, Source, GeneCards

tou 7845 -0.042 -0.4571 No

Page 40: Table: GSEA Results Summary

31 4768 naFBGN0032294Entrez, Source, GeneCards

CG6737 8031 -0.049 -0.4703 No

32 8824 naFBGN0031830Entrez, Source, GeneCards

CG11015 8795 -0.079 -0.5298 No

33 6352 naFBGN0020367Entrez, Source, GeneCards

Vha68-2 8932 -0.085 -0.5375 No

34 10342 naFBGN0022764Entrez, Source, GeneCards

Sin3A 9057 -0.090 -0.5440 No

35 9857 naFBGN0020611Entrez, Source, GeneCards

Vha44 9111 -0.092 -0.5446 No

36 9996 naFBGN0039830Entrez, Source, GeneCards

CG1746 9464 -0.108 -0.5691 No

37 9158 naFBGN0034169Entrez, Source, GeneCards

CG9013 9635 -0.115 -0.5784 No

38 9752 naFBGN0038295Entrez, Source, GeneCards

Gyc88E 9697 -0.119 -0.5786 No

39 1772 naFBGN0016687Entrez, Source, GeneCards

Nurf-38 9810 -0.125 -0.5827 No

40 8549 naFBGN0005671Entrez, Source, GeneCards

Vha55 10104 -0.142 -0.6009 No

41 4572 naFBGN0030975Entrez, Source, GeneCards

CG7349 10201 -0.148 -0.6028 No

42 11505 naFBGN0025839Entrez, Source, GeneCards

CG3621 10230 -0.150 -0.5990 No

43 9957 naFBGN0034877Entrez, Source, GeneCards

CG17280 10255 -0.151 -0.5948 No

44 10208 naFBGN0015324Entrez, Source, GeneCards

Vha26 10301 -0.154 -0.5922 No

45 10795 naFBGN0022097Entrez, Source, GeneCards

Vha36 10626 -0.178 -0.6115 Yes

46 11688 naFBGN0033393Entrez, Source, GeneCards

CG8029 10683 -0.183 -0.6087 Yes

47 10199 naFBGN0030605Entrez, Source, CG5548 10719 -0.186 -0.6039 Yes

Page 41: Table: GSEA Results Summary

GeneCards

48 4647 naFBGN0019644Entrez, Source, GeneCards

ATPsyn-b 10745 -0.189 -0.5983 Yes

49 12172 naFBGN0035032Entrez, Source, GeneCards

CG4692 10894 -0.204 -0.6021 Yes

50 1460 naFBGN0037001Entrez, Source, GeneCards

CG6020 11113 -0.225 -0.6109 Yes

51 8425 naFBGN0031684Entrez, Source, GeneCards

CG8680 11152 -0.230 -0.6046 Yes

52 11066 naFBGN0034576Entrez, Source, GeneCards

CG9350 11173 -0.231 -0.5968 Yes

53 11434 naFBGN0033961Entrez, Source, GeneCards

CG12859 11192 -0.233 -0.5888 Yes

54 8280 naFBGN0014391Entrez, Source, GeneCards

sun 11215 -0.236 -0.5810 Yes

55 9107 naFBGN0015031Entrez, Source, GeneCards

cype 11266 -0.243 -0.5752 Yes

56 5266 naFBGN0021906Entrez, Source, GeneCards

RFeSP 11393 -0.260 -0.5749 Yes

57 3876 naFBGN0019957Entrez, Source, GeneCards

ND42 11399 -0.261 -0.5647 Yes

58 2479 naFBGN0021967Entrez, Source, GeneCards

Pdsw 11422 -0.264 -0.5558 Yes

59 10081 naFBGN0033020Entrez, Source, GeneCards

CG10396 11494 -0.276 -0.5504 Yes

60 8618 naFBGN0039112Entrez, Source, GeneCards

CG10219 11533 -0.284 -0.5419 Yes

61 11366 naFBGN0039651Entrez, Source, GeneCards

CG14508 11549 -0.288 -0.5314 Yes

62 301 naFBGN0031505Entrez, Source, GeneCards

CG12400 11567 -0.293 -0.5208 Yes

63 9550 naFBGN0039669Entrez, Source, GeneCards

CG2014 11678 -0.316 -0.5170 Yes

Page 42: Table: GSEA Results Summary

64 1832 naFBGN0036830Entrez, Source, GeneCards

CG14077 11688 -0.319 -0.5047 Yes

65 4510 naFBGN0011361Entrez, Source, GeneCards

mtacp1 11704 -0.323 -0.4928 Yes

66 9929 naFBGN0010217Entrez, Source, GeneCards

ATPsyn-beta 11707 -0.323 -0.4798 Yes

67 4089 naFBGN0011455Entrez, Source, GeneCards

l(3)neo18 11727 -0.327 -0.4680 Yes

68 9329 naFBGN0030610Entrez, Source, GeneCards

CG9065 11736 -0.329 -0.4553 Yes

69 3936 naFBGN0029888Entrez, Source, GeneCards

CG3192 11744 -0.331 -0.4424 Yes

70 4814 naFBGN0032833Entrez, Source, GeneCards

CG10664 11747 -0.332 -0.4290 Yes

71 2180 naFBGN0039576Entrez, Source, GeneCards

CG17856 11753 -0.335 -0.4158 Yes

72 7240 naFBGN0030718Entrez, Source, GeneCards

CG9172 11846 -0.363 -0.4085 Yes

73 11324 naFBGN0010426Entrez, Source, GeneCards

Vha14 11856 -0.366 -0.3943 Yes

74 11063 naFBGN0034645Entrez, Source, GeneCards

CG10320 11923 -0.391 -0.3838 Yes

75 11337 naFBGN0038224Entrez, Source, GeneCards

CG3321 11934 -0.397 -0.3684 Yes

76 11841 naFBGN0020235Entrez, Source, GeneCards

ATPsyn-gamma 11949 -0.404 -0.3531 Yes

77 2936 naFBGN0030733Entrez, Source, GeneCards

CG3560 11985 -0.422 -0.3388 Yes

78 8795 naFBGN0029971Entrez, Source, GeneCards

CG18624 11997 -0.430 -0.3221 Yes

79 10586 naFBGN0040773Entrez, Source, GeneCards

CG2249 12007 -0.436 -0.3051 Yes

80 5294 naFBGN0031771Entrez, Source, CG9140 12023 -0.446 -0.2882 Yes

Page 43: Table: GSEA Results Summary

GeneCards

81 8095 naFBGN0028670Entrez, Source, GeneCards

Vha100-2 12025 -0.447 -0.2701 Yes

82 9754 naFBGN0016691Entrez, Source, GeneCards

Oscp 12048 -0.457 -0.2532 Yes

83 12013 naFBGN0016120Entrez, Source, GeneCards

ATPsyn-d 12078 -0.483 -0.2359 Yes

84 9058 naFBGN0019624Entrez, Source, GeneCards

CoVa 12080 -0.484 -0.2163 Yes

85 9471 naFBGN0035600Entrez, Source, GeneCards

CG4769 12118 -0.526 -0.1978 Yes

86 7600 naFBGN0017567Entrez, Source, GeneCards

ND23 12136 -0.560 -0.1764 Yes

87 9776 naFBGN0011227Entrez, Source, GeneCards

ox 12157 -0.586 -0.1542 Yes

88 9459 naFBGN0035404Entrez, Source, GeneCards

CG12079 12175 -0.613 -0.1306 Yes

89 6704 naFBGN0030853Entrez, Source, GeneCards

CG5703 12176 -0.614 -0.1056 Yes

90 8813 naFBGN0031021Entrez, Source, GeneCards

CG12203 12185 -0.625 -0.0807 Yes

91 8462 naFBGN0032373Entrez, Source, GeneCards

CG12602 12207 -0.672 -0.0551 Yes

92 7479 naFBGN0010612Entrez, Source, GeneCards

l(2)06225 12220 -0.721 -0.0266 Yes

93 7770 naFBGN0028664Entrez, Source, GeneCards

VhaM9.7-1 12227 -0.746 0.0033 Yes

Page 44: Table: GSEA Results Summary
Page 45: Table: GSEA Results Summary

Fig 2: 00190 Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: 00190: Random ES distribution Gene set null distribution of ES for 00190

Page 46: Table: GSEA Results Summary

DatasetMdata_gsea.indy_phenotype_file.cls#indy_50d_versus_wt_50d.indy_phenotype_file.cls#indy_50d_versus_wt_50d_repos

Phenotype indy_phenotype_file.cls#indy_50d_versus_wt_50d_repos

Upregulated in class wt_50d

GeneSet 00190

Enrichment Score (ES) -0.6292674

Normalized Enrichment Score (NES) -2.2918499

Nominal p-value 0.0

FDR q-value 0.0

FWER p-Value 0.0

Table: GSEA Results Summary

Fig 1: Enrichment plot: 00190

Page 47: Table: GSEA Results Summary

Profile of the Running ES Score & Positions of GeneSet Members on the Rank OrderedList

PROBE DESCRIPTION(from dataset) GENE SYMBOL GENE_TITLE

RANK INGENELIST

RANKMETRICSCORE

RUNNINGES

COREENRICHMENT

1 1050 naFBGN0015396Entrez, Source, GeneCards

jumu 364 0.296 -0.0153 No

2 8095 naFBGN0028670Entrez, Source, GeneCards

Vha100-2 1049 0.181 -0.0625 No

3 10342 naFBGN0022764Entrez, Source, GeneCards

Sin3A 1364 0.152 -0.0808 No

4 9558 naFBGN0028671Entrez, Source, GeneCards

Vha100-1 1590 0.137 -0.0925 No

5 9994 naFBGN0004145Entrez, Source, GeneCards

Vha16 1950 0.114 -0.1164 No

6 6995 naFBGN0037860Entrez, Source, GeneCards

CG6629 2509 0.088 -0.1579 No

7 792 naFBGN0036518Entrez, Source, GeneCards

RhoGAP71E 2529 0.087 -0.1551 No

8 9752 naFBGN0038295Entrez, Source, GeneCards

Gyc88E 2684 0.079 -0.1639 No

9 2567 naFBGN0031831Entrez, Source, GeneCards

CG11043 2721 0.078 -0.1630 No

10 11434 naFBGN0033961Entrez, Source, GeneCards

CG12859 2932 0.070 -0.1768 No

11 8462 naFBGN0032373Entrez, Source, GeneCards

CG12602 3004 0.067 -0.1793 No

12 4572 naFBGN0030975Entrez, Source, GeneCards

CG7349 3118 0.063 -0.1855 No

13 11324 naFBGN0010426Entrez, Source, GeneCards

Vha14 3439 0.052 -0.2092 No

14 5704 naFBGN0027660Entrez, Source, blot 3599 0.046 -0.2200 No

Table: GSEA details [plain text format]

Page 48: Table: GSEA Results Summary

GeneCards

15 2648 naFBGN0037579Entrez, Source, GeneCards

CG18193 4001 0.034 -0.2512 No

16 7703 naFBGN0028665Entrez, Source, GeneCards

VhaAC39 4156 0.029 -0.2624 No

17 8795 naFBGN0029971Entrez, Source, GeneCards

CG18624 5305 -0.005 -0.3565 No

18 7770 naFBGN0028664Entrez, Source, GeneCards

VhaM9.7-1 5452 -0.010 -0.3680 No

19 11616 naFBGN0024288Entrez, Source, GeneCards

Sox100B 5846 -0.020 -0.3993 No

20 10795 naFBGN0022097Entrez, Source, GeneCards

Vha36 6893 -0.051 -0.4827 No

21 11688 naFBGN0033393Entrez, Source, GeneCards

CG8029 6935 -0.052 -0.4835 No

22 1772 naFBGN0016687Entrez, Source, GeneCards

Nurf-38 6971 -0.053 -0.4837 No

23 8549 naFBGN0005671Entrez, Source, GeneCards

Vha55 7022 -0.054 -0.4852 No

24 12255 naFBGN0026753Entrez, Source, GeneCards

Vha13 7032 -0.055 -0.4832 No

25 2014 naFBGN0020368Entrez, Source, GeneCards

Vha68-1 7409 -0.067 -0.5108 No

26 9655 naFBGN0033636Entrez, Source, GeneCards

tou 7502 -0.069 -0.5149 No

27 8280 naFBGN0014391Entrez, Source, GeneCards

sun 7582 -0.073 -0.5178 No

28 9857 naFBGN0020611Entrez, Source, GeneCards

Vha44 7685 -0.076 -0.5225 No

29 10818 naFBGN0033706Entrez, Source, GeneCards

CG13167 8313 -0.097 -0.5692 No

30 2881 naFBGN0034938Entrez, Source, GeneCards

CG3803 8427 -0.101 -0.5735 No

Page 49: Table: GSEA Results Summary

31 4768 naFBGN0032294Entrez, Source, GeneCards

CG6737 8512 -0.103 -0.5753 No

32 9550 naFBGN0039669Entrez, Source, GeneCards

CG2014 8519 -0.104 -0.5706 No

33 976 naFBGN0032464Entrez, Source, GeneCards

CG5075 8671 -0.109 -0.5776 No

34 10390 naFBGN0039909Entrez, Source, GeneCards

CG1970 8699 -0.110 -0.5744 No

35 5961 naFBGN0028662Entrez, Source, GeneCards

VhaPPA1-1 8751 -0.112 -0.5731 No

36 4647 naFBGN0019644Entrez, Source, GeneCards

ATPsyn-b 8795 -0.113 -0.5710 No

37 10208 naFBGN0015324Entrez, Source, GeneCards

Vha26 8954 -0.120 -0.5780 No

38 7483 naFBGN0027779Entrez, Source, GeneCards

VhaSFD 9032 -0.123 -0.5783 No

39 10081 naFBGN0033020Entrez, Source, GeneCards

CG10396 9319 -0.135 -0.5951 No

40 6352 naFBGN0020367Entrez, Source, GeneCards

Vha68-2 9424 -0.139 -0.5968 No

41 12172 naFBGN0035032Entrez, Source, GeneCards

CG4692 9539 -0.145 -0.5990 No

42 6586 naFBGN0017566Entrez, Source, GeneCards

ND75 9630 -0.149 -0.5990 No

43 11366 naFBGN0039651Entrez, Source, GeneCards

CG14508 9688 -0.151 -0.5962 No

44 10199 naFBGN0030605Entrez, Source, GeneCards

CG5548 9752 -0.153 -0.5938 No

45 11841 naFBGN0020235Entrez, Source, GeneCards

ATPsyn-gamma 9983 -0.165 -0.6046 No

46 4510 naFBGN0011361Entrez, Source, GeneCards

mtacp1 10170 -0.175 -0.6112 No

47 11066 naFBGN0034576Entrez, Source, CG9350 10391 -0.190 -0.6199 Yes

Page 50: Table: GSEA Results Summary

GeneCards

48 2479 naFBGN0021967Entrez, Source, GeneCards

Pdsw 10471 -0.195 -0.6168 Yes

49 9329 naFBGN0030610Entrez, Source, GeneCards

CG9065 10548 -0.199 -0.6131 Yes

50 6925 naFBGN0032511Entrez, Source, GeneCards

CG9306 10591 -0.202 -0.6066 Yes

51 8813 naFBGN0031021Entrez, Source, GeneCards

CG12203 10599 -0.203 -0.5972 Yes

52 2506 naFBGN0031228Entrez, Source, GeneCards

CG11455 10780 -0.219 -0.6011 Yes

53 3776 naFBGN0040529Entrez, Source, GeneCards

CG9603 10798 -0.220 -0.5917 Yes

54 1832 naFBGN0036830Entrez, Source, GeneCards

CG14077 10838 -0.224 -0.5838 Yes

55 7240 naFBGN0030718Entrez, Source, GeneCards

CG9172 10875 -0.228 -0.5755 Yes

56 10210 naFBGN0037172Entrez, Source, GeneCards

CG6914 10919 -0.231 -0.5676 Yes

57 10586 naFBGN0040773Entrez, Source, GeneCards

CG2249 11026 -0.241 -0.5644 Yes

58 8824 naFBGN0031830Entrez, Source, GeneCards

CG11015 11033 -0.242 -0.5529 Yes

59 9058 naFBGN0019624Entrez, Source, GeneCards

CoVa 11050 -0.243 -0.5422 Yes

60 9929 naFBGN0010217Entrez, Source, GeneCards

ATPsyn-beta 11180 -0.258 -0.5401 Yes

61 301 naFBGN0031505Entrez, Source, GeneCards

CG12400 11220 -0.262 -0.5304 Yes

62 9957 naFBGN0034877Entrez, Source, GeneCards

CG17280 11222 -0.262 -0.5175 Yes

63 9996 naFBGN0039830Entrez, Source, GeneCards

CG1746 11346 -0.277 -0.5140 Yes

Page 51: Table: GSEA Results Summary

64 9776 naFBGN0011227Entrez, Source, GeneCards

ox 11437 -0.291 -0.5070 Yes

65 4747 naFBGN0031941Entrez, Source, GeneCards

CG7211 11464 -0.295 -0.4946 Yes

66 4089 naFBGN0011455Entrez, Source, GeneCards

l(3)neo18 11473 -0.297 -0.4806 Yes

67 11063 naFBGN0034645Entrez, Source, GeneCards

CG10320 11497 -0.300 -0.4676 Yes

68 5266 naFBGN0021906Entrez, Source, GeneCards

RFeSP 11518 -0.303 -0.4543 Yes

69 9158 naFBGN0034169Entrez, Source, GeneCards

CG9013 11565 -0.312 -0.4426 Yes

70 1460 naFBGN0037001Entrez, Source, GeneCards

CG6020 11582 -0.315 -0.4284 Yes

71 6704 naFBGN0030853Entrez, Source, GeneCards

CG5703 11633 -0.325 -0.4164 Yes

72 9107 naFBGN0015031Entrez, Source, GeneCards

cype 11670 -0.333 -0.4029 Yes

73 9293 naFBGN0016119Entrez, Source, GeneCards

ATPsyn-Cf6 11719 -0.344 -0.3899 Yes

74 2273 naFBGN0011211Entrez, Source, GeneCards

blw 11745 -0.348 -0.3748 Yes

75 8425 naFBGN0031684Entrez, Source, GeneCards

CG8680 11748 -0.350 -0.3577 Yes

76 11337 naFBGN0038224Entrez, Source, GeneCards

CG3321 11816 -0.366 -0.3451 Yes

77 2180 naFBGN0039576Entrez, Source, GeneCards

CG17856 11835 -0.374 -0.3281 Yes

78 2936 naFBGN0030733Entrez, Source, GeneCards

CG3560 11883 -0.386 -0.3129 Yes

79 8618 naFBGN0039112Entrez, Source, GeneCards

CG10219 11886 -0.387 -0.2939 Yes

80 9754 naFBGN0016691Entrez, Source, Oscp 11888 -0.387 -0.2749 Yes

Page 52: Table: GSEA Results Summary

GeneCards

81 9471 naFBGN0035600Entrez, Source, GeneCards

CG4769 11889 -0.387 -0.2558 Yes

82 3718 naFBGN0032222Entrez, Source, GeneCards

CG5037 11894 -0.388 -0.2370 Yes

83 7479 naFBGN0010612Entrez, Source, GeneCards

l(2)06225 11944 -0.403 -0.2211 Yes

84 4068 naFBGN0036568Entrez, Source, GeneCards

CG5389 11970 -0.413 -0.2027 Yes

85 3936 naFBGN0029888Entrez, Source, GeneCards

CG3192 11986 -0.416 -0.1834 Yes

86 11505 naFBGN0025839Entrez, Source, GeneCards

CG3621 12056 -0.451 -0.1668 Yes

87 7600 naFBGN0017567Entrez, Source, GeneCards

ND23 12075 -0.461 -0.1455 Yes

88 12013 naFBGN0016120Entrez, Source, GeneCards

ATPsyn-d 12083 -0.466 -0.1230 Yes

89 9089 naFBGN0014028Entrez, Source, GeneCards

SdhB 12126 -0.493 -0.1022 Yes

90 3876 naFBGN0019957Entrez, Source, GeneCards

ND42 12137 -0.502 -0.0782 Yes

91 4814 naFBGN0032833Entrez, Source, GeneCards

CG10664 12157 -0.517 -0.0542 Yes

92 5294 naFBGN0031771Entrez, Source, GeneCards

CG9140 12169 -0.532 -0.0288 Yes

93 9459 naFBGN0035404Entrez, Source, GeneCards

CG12079 12247 -0.745 0.0016 Yes

Page 53: Table: GSEA Results Summary
Page 54: Table: GSEA Results Summary

Fig 2: 00190 Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: 00190: Random ES distribution Gene set null distribution of ES for 00190

Page 55: Table: GSEA Results Summary

DatasetMdata_gsea.indy_phenotype_file.cls#indy_70d_versus_wt_70d.indy_phenotype_file.cls#indy_70d_versus_wt_70d_repos

Phenotype indy_phenotype_file.cls#indy_70d_versus_wt_70d_repos

Upregulated in class wt_70d

GeneSet 00190

Enrichment Score (ES) -0.43780658

Normalized Enrichment Score (NES) -1.3818628

Nominal p-value 0.028421052

FDR q-value 0.26122952

FWER p-Value 0.996

Table: GSEA Results Summary

Fig 1: Enrichment plot: 00190

Page 56: Table: GSEA Results Summary

Profile of the Running ES Score & Positions of GeneSet Members on the Rank OrderedList

PROBE DESCRIPTION(from dataset) GENE SYMBOL GENE_TITLE

RANK INGENELIST

RANKMETRICSCORE

RUNNINGES

COREENRICHMENT

1 6586 naFBGN0017566Entrez, Source, GeneCards

ND75 216 0.412 0.0028 No

2 11366 naFBGN0039651Entrez, Source, GeneCards

CG14508 241 0.398 0.0207 No

3 8095 naFBGN0028670Entrez, Source, GeneCards

Vha100-2 483 0.309 0.0163 No

4 7483 naFBGN0027779Entrez, Source, GeneCards

VhaSFD 551 0.293 0.0254 No

5 10818 naFBGN0033706Entrez, Source, GeneCards

CG13167 579 0.288 0.0376 No

6 9558 naFBGN0028671Entrez, Source, GeneCards

Vha100-1 743 0.256 0.0370 No

7 8549 naFBGN0005671Entrez, Source, GeneCards

Vha55 745 0.256 0.0497 No

8 11688 naFBGN0033393Entrez, Source, GeneCards

CG8029 920 0.231 0.0469 No

9 2014 naFBGN0020368Entrez, Source, GeneCards

Vha68-1 947 0.227 0.0561 No

10 6352 naFBGN0020367Entrez, Source, GeneCards

Vha68-2 1481 0.175 0.0211 No

11 9994 naFBGN0004145Entrez, Source, GeneCards

Vha16 1677 0.162 0.0131 No

12 5961 naFBGN0028662Entrez, Source, GeneCards

VhaPPA1-1 1692 0.160 0.0200 No

13 10208 naFBGN0015324Entrez, Source, GeneCards

Vha26 1893 0.148 0.0109 No

14 9089 naFBGN0014028Entrez, Source, SdhB 2830 0.096 -0.0612 No

Table: GSEA details [plain text format]

Page 57: Table: GSEA Results Summary

GeneCards

15 9655 naFBGN0033636Entrez, Source, GeneCards

tou 3030 0.086 -0.0732 No

16 10199 naFBGN0030605Entrez, Source, GeneCards

CG5548 3054 0.085 -0.0709 No

17 8824 naFBGN0031830Entrez, Source, GeneCards

CG11015 3130 0.082 -0.0729 No

18 2881 naFBGN0034938Entrez, Source, GeneCards

CG3803 3234 0.078 -0.0775 No

19 10342 naFBGN0022764Entrez, Source, GeneCards

Sin3A 3353 0.073 -0.0836 No

20 9158 naFBGN0034169Entrez, Source, GeneCards

CG9013 3395 0.071 -0.0834 No

21 11434 naFBGN0033961Entrez, Source, GeneCards

CG12859 3635 0.061 -0.1000 No

22 792 naFBGN0036518Entrez, Source, GeneCards

RhoGAP71E 3640 0.060 -0.0973 No

23 2273 naFBGN0011211Entrez, Source, GeneCards

blw 3841 0.053 -0.1111 No

24 9752 naFBGN0038295Entrez, Source, GeneCards

Gyc88E 3872 0.052 -0.1110 No

25 10210 naFBGN0037172Entrez, Source, GeneCards

CG6914 3896 0.051 -0.1104 No

26 1832 naFBGN0036830Entrez, Source, GeneCards

CG14077 4004 0.047 -0.1168 No

27 9550 naFBGN0039669Entrez, Source, GeneCards

CG2014 4045 0.046 -0.1178 No

28 11616 naFBGN0024288Entrez, Source, GeneCards

Sox100B 4203 0.041 -0.1287 No

29 8462 naFBGN0032373Entrez, Source, GeneCards

CG12602 4669 0.024 -0.1657 No

30 6925 naFBGN0032511Entrez, Source, GeneCards

CG9306 4819 0.018 -0.1770 No

Page 58: Table: GSEA Results Summary

31 12013 naFBGN0016120Entrez, Source, GeneCards

ATPsyn-d 4878 0.016 -0.1810 No

32 3936 naFBGN0029888Entrez, Source, GeneCards

CG3192 4953 0.013 -0.1864 No

33 4768 naFBGN0032294Entrez, Source, GeneCards

CG6737 5205 0.003 -0.2069 No

34 11505 naFBGN0025839Entrez, Source, GeneCards

CG3621 6396 -0.041 -0.3026 No

35 11324 naFBGN0010426Entrez, Source, GeneCards

Vha14 6677 -0.053 -0.3230 No

36 10390 naFBGN0039909Entrez, Source, GeneCards

CG1970 6722 -0.055 -0.3238 No

37 12172 naFBGN0035032Entrez, Source, GeneCards

CG4692 7057 -0.067 -0.3479 No

38 8795 naFBGN0029971Entrez, Source, GeneCards

CG18624 7370 -0.080 -0.3696 No

39 6995 naFBGN0037860Entrez, Source, GeneCards

CG6629 7566 -0.088 -0.3812 No

40 11337 naFBGN0038224Entrez, Source, GeneCards

CG3321 8256 -0.119 -0.4319 Yes

41 2567 naFBGN0031831Entrez, Source, GeneCards

CG11043 8294 -0.121 -0.4289 Yes

42 12255 naFBGN0026753Entrez, Source, GeneCards

Vha13 8305 -0.122 -0.4236 Yes

43 5704 naFBGN0027660Entrez, Source, GeneCards

blot 8461 -0.130 -0.4299 Yes

44 10795 naFBGN0022097Entrez, Source, GeneCards

Vha36 8522 -0.133 -0.4281 Yes

45 9329 naFBGN0030610Entrez, Source, GeneCards

CG9065 8562 -0.136 -0.4246 Yes

46 3718 naFBGN0032222Entrez, Source, GeneCards

CG5037 8608 -0.138 -0.4214 Yes

47 11063 naFBGN0034645Entrez, Source, CG10320 8647 -0.140 -0.4175 Yes

Page 59: Table: GSEA Results Summary

GeneCards

48 9293 naFBGN0016119Entrez, Source, GeneCards

ATPsyn-Cf6 8718 -0.144 -0.4161 Yes

49 7703 naFBGN0028665Entrez, Source, GeneCards

VhaAC39 8785 -0.147 -0.4142 Yes

50 4814 naFBGN0032833Entrez, Source, GeneCards

CG10664 8846 -0.151 -0.4116 Yes

51 9957 naFBGN0034877Entrez, Source, GeneCards

CG17280 8911 -0.155 -0.4091 Yes

52 9996 naFBGN0039830Entrez, Source, GeneCards

CG1746 8985 -0.160 -0.4071 Yes

53 10081 naFBGN0033020Entrez, Source, GeneCards

CG10396 9126 -0.168 -0.4102 Yes

54 8618 naFBGN0039112Entrez, Source, GeneCards

CG10219 9135 -0.168 -0.4025 Yes

55 11841 naFBGN0020235Entrez, Source, GeneCards

ATPsyn-gamma 9203 -0.172 -0.3994 Yes

56 7770 naFBGN0028664Entrez, Source, GeneCards

VhaM9.7-1 9246 -0.175 -0.3941 Yes

57 4510 naFBGN0011361Entrez, Source, GeneCards

mtacp1 9248 -0.175 -0.3854 Yes

58 9107 naFBGN0015031Entrez, Source, GeneCards

cype 9256 -0.176 -0.3773 Yes

59 9857 naFBGN0020611Entrez, Source, GeneCards

Vha44 9327 -0.180 -0.3740 Yes

60 4572 naFBGN0030975Entrez, Source, GeneCards

CG7349 9376 -0.184 -0.3688 Yes

61 8813 naFBGN0031021Entrez, Source, GeneCards

CG12203 9513 -0.194 -0.3703 Yes

62 3876 naFBGN0019957Entrez, Source, GeneCards

ND42 9598 -0.201 -0.3672 Yes

63 9929 naFBGN0010217Entrez, Source, GeneCards

ATPsyn-beta 9646 -0.205 -0.3608 Yes

Page 60: Table: GSEA Results Summary

64 9471 naFBGN0035600Entrez, Source, GeneCards

CG4769 9782 -0.216 -0.3611 Yes

65 7240 naFBGN0030718Entrez, Source, GeneCards

CG9172 9879 -0.224 -0.3579 Yes

66 11066 naFBGN0034576Entrez, Source, GeneCards

CG9350 10033 -0.239 -0.3585 Yes

67 1460 naFBGN0037001Entrez, Source, GeneCards

CG6020 10142 -0.250 -0.3549 Yes

68 10586 naFBGN0040773Entrez, Source, GeneCards

CG2249 10187 -0.255 -0.3458 Yes

69 7600 naFBGN0017567Entrez, Source, GeneCards

ND23 10211 -0.259 -0.3348 Yes

70 301 naFBGN0031505Entrez, Source, GeneCards

CG12400 10227 -0.260 -0.3230 Yes

71 2936 naFBGN0030733Entrez, Source, GeneCards

CG3560 10254 -0.263 -0.3120 Yes

72 9058 naFBGN0019624Entrez, Source, GeneCards

CoVa 10410 -0.280 -0.3108 Yes

73 9754 naFBGN0016691Entrez, Source, GeneCards

Oscp 10427 -0.283 -0.2980 Yes

74 2506 naFBGN0031228Entrez, Source, GeneCards

CG11455 10485 -0.290 -0.2882 Yes

75 1772 naFBGN0016687Entrez, Source, GeneCards

Nurf-38 10499 -0.292 -0.2747 Yes

76 5294 naFBGN0031771Entrez, Source, GeneCards

CG9140 10584 -0.305 -0.2664 Yes

77 2648 naFBGN0037579Entrez, Source, GeneCards

CG18193 10636 -0.313 -0.2549 Yes

78 4647 naFBGN0019644Entrez, Source, GeneCards

ATPsyn-b 10691 -0.322 -0.2433 Yes

79 6704 naFBGN0030853Entrez, Source, GeneCards

CG5703 10722 -0.326 -0.2295 Yes

80 8425 naFBGN0031684Entrez, Source, CG8680 10880 -0.351 -0.2249 Yes

Page 61: Table: GSEA Results Summary

GeneCards

81 9776 naFBGN0011227Entrez, Source, GeneCards

ox 10976 -0.368 -0.2143 Yes

82 5266 naFBGN0021906Entrez, Source, GeneCards

RFeSP 11102 -0.395 -0.2049 Yes

83 2479 naFBGN0021967Entrez, Source, GeneCards

Pdsw 11185 -0.413 -0.1910 Yes

84 8280 naFBGN0014391Entrez, Source, GeneCards

sun 11258 -0.431 -0.1754 Yes

85 4089 naFBGN0011455Entrez, Source, GeneCards

l(3)neo18 11278 -0.436 -0.1553 Yes

86 3776 naFBGN0040529Entrez, Source, GeneCards

CG9603 11452 -0.481 -0.1455 Yes

87 4068 naFBGN0036568Entrez, Source, GeneCards

CG5389 11461 -0.484 -0.1220 Yes

88 2180 naFBGN0039576Entrez, Source, GeneCards

CG17856 11663 -0.558 -0.1106 Yes

89 976 naFBGN0032464Entrez, Source, GeneCards

CG5075 11673 -0.562 -0.0833 Yes

90 9459 naFBGN0035404Entrez, Source, GeneCards

CG12079 11704 -0.573 -0.0572 Yes

91 7479 naFBGN0010612Entrez, Source, GeneCards

l(2)06225 11793 -0.604 -0.0343 Yes

92 1050 naFBGN0015396Entrez, Source, GeneCards

jumu 11877 -0.643 -0.0091 Yes

93 4747 naFBGN0031941Entrez, Source, GeneCards

CG7211 12092 -0.822 0.0144 Yes

Page 62: Table: GSEA Results Summary
Page 63: Table: GSEA Results Summary

Fig 2: 00190 Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: 00190: Random ES distribution Gene set null distribution of ES for 00190