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Russia
P. (Chairman), USA
G. India
The Netherlands
UK
USA
UK
IUCr Monographs on Crystallography
Accurate molecular structures: their determination and importance
editors
2 P. P. Ewald and his dynamical theory of X-ray diffraction
editors
Electron diffraction techniques, Volume 1
editor
Electron diffraction techniques, Volume
editor
The Rietveld method
editor
Introduction to crystallographic statistics
Crystallographic instrumentation
Direct phasing in crystallography: fundamentals and applications
The weak hydrogen bond in structural chemistry and biology
10 Defect and microstructure analysis by diffraction
11 Dynamical theory of X-ray diffraction
12 The chemical bond in inorganic chemistry
IUCr Texts on Crystallography
1 The solid state: from superconductors to superalloys
translated by
Fundamentals of crystallography
editor
X-Ray charge densities and chemical bonding
The basics of crystallography and diffraction, second edition
IUCr Crystallographic Symposia
Patterson and Pattersons: fifty years of the Patterson function
editors
2 Molecular structure: chemical reactivity and biological activity
editors
Crystallographic computing 4: techniques and new technologies
editors
Organic crystal chemistry
editors
Crystallographic computing 5: from chemistry to biology
editors
Crystallographic computing 6: a window on modern crystallography
editors
1 Correlations, transformations, and interactions in organic crystal chemistry
editors
BROWN
Department of Physics and Astronomy
McMaster University
Hamilton
Ontario
OXFORD
Preface
11 April 2001
Contents
R0
7
a priori
Historical introduction
1.1 Introduction
a
posteriori
1.2 Chemical bonds
HISTORICAL INTRODUCTION
Fig.
et al. et al.
4
MODEL
U
1.3 The ionic model
ionic model
U,
1.4 Quantum mechanics
et al. et al.
1.5 The symmetry model
et al.
1.6 Topological models
1.7 Pauling's electrostatic valence model
s =
The rule of parsimony.
bond valence
bond valence model
et al. et al.
2The ionic bond
2.1 Introduction
U
et al.
BOND
Crystal energy and the Coulomb field
Eh
Ei
E^oclii
E^oclii
EitTnono
EitTnono i,
Ei
BOND
Q{,
Qt
Q{.
Every part of the electron density of the crystal must belong to at least one
atom.
The partitioning must ensure an appropriate assignment of charges, Qf.
Qh
Qt Vt.
Consistent with the above constraints, the partitioning should be chosen so as
to minimize Emu\t.
Emu\t
et al.
Vt.
2.4 The Madelung field of a crystal
et al.
i
Q{ Qt.
2
BOND
Fig.
{(x,y,z);x + y = I } . et al.
Fig.
et al.
Cy,
Py,
qt
Py,
Qf
qt. Ptj
Cy
Cy. Cy,
Cy
Qf Cy. Cy
a priori,
Cy
Cy
Bond networks and bond graphs
a network consists of an
array of nodes which are connected by links.
valences the fluxes
Na Na connectivity adjacency matrix,
Table 2.1
BlB2HIH2H3H4H5H6
Bl
00111010
B2
00110101
HI
11000000
H2
11000000
H3
10000000
H4
01000000
H5
10000000
H6
01000000
BOND
Fig. 2.4.
Fig. 2.6.
2.6 Coordination number
Definition of coordination number. The coordination number of an ion is the
number of ions to which it is linked by electrostatic flux.
et al.
tertiary bonds,5
secondary bond was
tertiary bond
THE BOND
Fig.
et al.
a c z
Conclusions
The chemical bonding can be completely described in terms of localized bonds
between neighbouring atoms.
The bonds have a cation at one end and an anion at the other.
The bond valence model
3.1 Experimental bond valences and bond lengths
Ctj,
bond strength,
3
EXPERIMENTAL BOND VALENCES AND BOND LENGTHS
Fig. 3.1.
et al.
experimental
bond valence, S.
Rtj j, Sy
R0, B,
B
RQ,
B
B
28 THE BOND MODEL
valence sum rule,
(Vf
Qf Vj)
Sy,
et al.
RQ, B,
3.2 Empirical network equations
Sy
valence sum
rule loop, equal valence, rule,
network equations.
theoretical bond valences
s.
S,
s,
unstrained
structures,
S.
strained structures
(3-
Table 3.1 s, S, R,
s S s-S
Qh Vt,
sy,
for unstrained structures at equilibrium all bonds have the same bond capacitance.
R0 B,
et al.
2
THE BOND MODEL 31
Vi
sy
the bond valence model cannot distinguish between ionic and covalent
bonding.
The bond valence model
Principle of maximum
symmetry,
THE BOND MODEL
Rule 3.1 As far as allowed by the chemical
and geometric constraints, all atoms and all bonds in a compound will be
chemically and geometrically indistinguishable.
Rule The breaking of symmetry is always the consequence of an
identifiable chemical or spatial constraint.
Rule The sum of the valences of all the bonds
formed by an ion is equal to the valence of the ion.
Condition 3.1. The stoichiometry must obey the electroneutrality principle, namely
that the sum of all the atomic valences (formal ionic charges), having regard to
their sign, is zero.
Condition The bond graph must be bipartite as described in Section 3.5, i.e. all
of the bonds must connect a cation, e.g. Na+, to an anion, e.g. Cl~.
loop, equal valence rule.
Rule 3.4 The sum of bond valences around any
loop in the bond network, having regard to the direction of the bond, is zero.
The valence of each atom is distributed as uniformly as possible among the bonds
that it forms.
Rule Increasing
the bond valence between two ions reduces the distance between them as shown
in Fig. 3.1.
3.4 The distortion theorem
Rule 3.6 For any ion, lengthening some of its bonds and
shortening others, keeping the bond valence sum the same, will always increase the
average bond length.
AR,
34 THE BOND MODEL
AR
Rule 3.6a For any ion,
lengthening some of its bonds and shortening others, keeping the average bond
length the same, will always increase the valence sum.
Rule If an ion is placed in an environment in which the average
bond length is too long, i.e. in a cavity which is too large for the ion, the
environment will distort in such a way as to increase the lengths of some bonds and
decrease the lengths of others in order to raise the bond valence sum to the
expected value.
3.5 Bond networks with non-bipartite graphs
BOND NETWORKS WITH NON-BIPARTITE GRAPHS 35
Fig. 3.3.
Fig. 3.4.
CF3CO^
C\+
C4+Q\~]~
36 THE BOND MODEL
Fig.
Fig. 3.6.
38 THE BOND MODEL
(T
TT
a
et al.
et al.
Anion and cation bonding strengths
4.1 Bond graphs and coordination number
Rule 4.1 A bond exists between a cationand an anion if its experimental bond valence is larger than 0.04 the cation
valence.
4
BONDING STRENGTHS
ideal coordination
numbers
BONDING STRENGTH
4.2 Anion bonding strength
anion bonding strength, sa,
P-O
Fig. 4.1.
BONDING STRENGTHS
maximum and minimum anion bonding strengths.
BONDING STRENGTH 47
pKa,
pK^
Lewis base strength.
strong weak anions
4.3 Cation bonding strength
cation bonding strengths, sc,
vc
Fig. 4.3. pKa.
BONDING STRENGTHS
strong weak cation
Lewis acid
strength.
Fig. 4.4.
Fig. 4.5.
4.4 The valence matching principle
Valence matching principle,
Rule The most stable compounds are formed
between cations and anions that have the same bonding strength.
(sa = (sc =
(sc =
(sc=
BONDING STRENGTHS
4.5 Hard and soft acids and bases
hard soft,
APPLICATIONS OF THE MATCHING PRINCIPLE
4.6 Applications of the valence matching principle
Fig. 4.6.
sc/sa
BONDING STRENGTHS
s^Sn
5Liquids
5.1 Introduction
The cation and anion bonding strength of water
Fig. 5.1.
sjsa
sc/sasjsa
(sc =
Reactions of cations with water
et al. et al.
n,
n.
5.4 Reactions of unions with water
Fig. 5.4.
PO^~
PO34~
(sc =
pK^,
Aqueous solubility
Mg(H2O)6SO4
CO\
CG>\ +
Fig.
(sc Sg)
A=
5.6 Aqueous solutions of soft ions
(sc =
Non-aqueous solutions and melts
(sc = Q.Q6
Fig. 5.6.
likeweak
Cation coordination number
6.1 Introduction
ab initio
mutatis mutandis,
6.2 Anion-anion repulsion
Fig. 6.1.
Fig. a.
Table 6.1
et al.
Fig. 6.3.
a,
s'',
s
COORDINATION
RQ = b =
s'.
s'
Sh s'.
Rmin s' >
Rmin. Sh
Rmin.
Sh,
s', Sh s'
Fig.
S^ Q.4vu,
S^>Q.2vu,
The normal hydrogen bond
normal hydrogen bond
STRONG HYDROGEN BONDS
Strong hydrogen bonds
Strong hydrogen
bonds
ROO
Fig. 7.6.
Weak hydrogen bonds
Rmin,
(Sh 3~,
r, 6)
6 r
D.
9,
9.
al.
et al.
8.3 Transition metals
TRANSITION
8.3.1 Jahn- Teller distorted cations
Fig. 8.6.
dx2_y2
dx2_y2
x-y
8.3.2 Transition-metal cations with empty or near-empty d shells
TRANSITION
et al.
et al.
Fig. 8.9.
TRANSITION
Fig. 8.10.
Table
8.4 Conclusions
9Physical properties of bonds
9.1 Introduction
9.2 Bond lengths and bond angles
R0,
B
q,
V, k
BOND LENGTHS AND BOND
RQ.1
k
k
RQ,
RQ
TT
R0
RQ
TT
TT
TT
RQ
TT RQ et al.
et al.
k k
et al.
x = [(Si + S2)/2V]
Si S2, 0
V/4, V
(S =
BOND LENGTHS AND BOND
9.3 Bond force constants and thermal vibrations
Fig. 9.1.
G,
S.
S> a b,1 1 1
a = 1 1 b = 1 .
A, G,
(A2),
Fig. 9.2.
T,
k A.
(A2}
U,
(A2) U
(A2)
et al.
(A2),
U,
(A2)
d(A2)/dT
dUuncoi/dT
THERMAL
Fig. 9.3.
9.4 Thermal expansion
et al.
R&.
114 PHYSICAL PROPERTIES OF BONDS
R'
(R) (R) Re SR
S',
SR/B SR/B
SR
S' S
Re.
S
(R) Re = AR
AR
(SR2),
(SR2)
(A2)
B = 37 G
Fig. 9.4.
G pS, p S
R S Rp
et al.
(A*),
R,
Fig. 9.5.
R',
(A2)/2R.
Gt
Fig. 9.6.
9.5 The variation of R0 with temperature
RQ,
AR.
R + AR R%,
R0 T,
T dR/dT
S
Solids
10
Space and space groups
10.1 Introduction
SPACE AND SPACE GROUPS
10.2 The crystal lattice and translational symmetry
R(l, m, n),
b, c
m, n)
b unit cell
R(l, m, n)
R(l,m,ri)
THE CRYSTAL SYMMETRY
Fig. 10.1.
Fig. 10.2.
124 SPACE AND SPACE GROUPS
Fig. 10.3.
Fig. 10.4.
10.3 Space groups
asymmetric unit
G,
space group.
x, y, z x, y, z.
p/n p ri)
G,
ofmG R,
mG mG =
10.4 Special positions
mG
Fig.
CO\
mG =
ofmG/2 =
non-translational unit. mN,
mG,
Fig. 10.6. nis mw
(ms 2,mwT). ms6, mw
ms3, mwT), ms 2, mw
ms mw
mN.
mN
S
W, S
mw mw\&
S, ms,
S W* S= N,
Rule 10.1. In a given space group, all the Wyckoff positions with the same multi-
plicity, mw, have site symmetries of the same order, ms.
Fig. 10.7. ms,
Rule 10.2. The order of the site symmetry of any Wyckoff position is in inverse
proportion to its multiplicity.
S,
mw,
10.5 Matching the special positions to the chemistry
his fundamental law of crystal chemistry
Rule 10.3. Since all the atoms in the chemical formula must exist on one or other
of the Wyckoff positions of a crystal, the multiplicity of an occupied Wyckoff
position must correspond to the frequency with which the corresponding atom
appears in the chemical formula, and the site symmetry of the Wyckoff position
must correspond to a possible symmetry of the atom's bonded environment.
spectrum
mN,
10.6 The symmetry of bonded neighbours
inter alia
ms = 4%,
ms = 24).
(D^k)
ms=
ms=8)
ms =
ms=6.
Table 10.1
m3
m+12
Table 10.2
m6
26
10.7 Summary
Modelling inorganic structures
11.1 The problem of a priori modelling
topology structure,
geometry,
relative
stability.
THE TOPOLOGY 135
11.2 Determining the topology
Principle of electroneutrality
Rule 11.1 Since the sum of all atomic valences is
zero, the sum of the atomic valences of the cations is equal to the sum of the atomic
valences of the anions.
Coordination number rule
Rule 6.1 Since each bond starts on a cation and ends
on an anion, the sum of the coordination numbers of the cations equals the sum ofthe coordination numbers of the anions, and both are equal to the total number of
bonds in the formula unit.
Rule 11.2 The ratio of the average coordination number of the
cations, (Na), to the average coordination number of the anions, (Nx), is the same
as the ratio of the number of anions, x, to the number of cations, a.
Rule 11.3 Compounds that have a high anion content will stabilize
high cation coordination numbers.
Principle of maximum symmetry
Rule 3.1 As far as allowed by chemical and
geometric constraints, all atoms and all bonds in a compound will be chemically
and geometrically indistinguishable.
Principle of close packing
Rule 11.4 Like ions tend to lie on close packed
lattices, since this arrangement minimizes their repulsive energy when they are
confined to a fixed volume.
Shubnikov's fundamental law of crystal chemistry
Rule 10.3 Atoms will occupy Wyckoff positions
in the crystal that are compatible in both multiplicity and symmetry with the
bond graph.
11.2.1 Space-based approaches
THE TOPOLOGY
Random structure approaches
et al.
et al.
Lattice models
THE TOPOLOGY
Fig.
HCP
FCC
et al.
139
et al.
11.2.2 Chemistry-based approaches
THE TOPOLOGY 141
Rule 11.5 When generating a chemical structure, the
strongest bonds are formed first, followed by the others in decreasing order of their
valence.
a priori
Creating the bond graph
Fig. 11.2.
THE TOPOLOGY 143
Fig. 11.3.
THE TOPOLOGY 145
Sy
Sy
Fundamental building blocks
Fig. 11.4.
THE TOPOLOGY 147
OPb64+.
et al. et al.
Polyhedral linkage
Fig. 11.5.
Fig. 11.6.
THE TOPOLOGY 149
et al.
Fig. 11.7.
THE TOPOLOGY 151
The space group method
ms =
ms=
ms=
ms =
ms=
ms =
V2
ms =
P4i23,
'a).
Weakly bonded structures
a priori
11.2.3 Valence maps
Fig. 11.8.
pt
pt
THE TOPOLOGY 159
Fig. 11.9.
c
in ph pf
pt
c
et al.
Fig. 11.10.
11.3 Refining the geometry
et al.
et al.
et al.
et al.
11.4 Modelling defect structures
et al.
et al.
11.5 Modelling glasses
al.
11.6 Summary
Lattice-induced strain
12.1 The origins of lattice-induced strain
Fig. 12.1.
Fig. 12.2.
et al.
lattice-induced strains
12.2 Structures with lattice-induced strain
bond strain index
et al. cr3
S
s
global instability
index et al.
Gil
Gil
Gil
et al.
et al.
Fig. 12.4.
I992a).
12.3 Relaxation of lattice-induced strain
12.3.1 Relaxation of the geometry
(S= (S =
12.3.2 Relaxation by defects
Fig. 12.5.
et al.
12.3.3 Electronic relaxation
8.
12.3.4 Relaxation of symmetrydisplacive phase transitions
12.3.5 Changing the bond graphreconstructive phase transitions
Fig. 12.6.
12.4 Incommensurate structures
et al.
RQ = 2l4pm
STRUCTURES 175
Fig. 12.8.
et al.
Fig. 12.9.
et al.
et al.
et al. et al.
et al.
12.5 Summary
s s
13
Applications
13.1 Introduction
13.2 Crystallography
13.2.1 Structure solution
ab initio,
ab initio et al.
et al.
(p\
V\ YiS\ ^S2
V\
V2
S,
andp2,
i p
i.
et al.
et al. et al.
p\
et al.
et al.
et al.
13.2.2 Analysis of crystal structures
primae
facie
et al.
bond valences (vu) bond valence sums (vu)
Sum
0.30
0.26, 0.25
0.24
1.05
0.28, 0.27
0.31
1.12
S
1.54
1.48
1.49
1.49
6.00
0.15
0.04
(0.76)
(1.00)
0.03
(0.82), 0.15
(1.00)
Sum
1.99
2.07
2.00
2.08
2.04
13.3 Physics
13.3.1 Perovskite-related solids
Fig. 13.1.
13.3.2 Electrical properties
et al.
APPLICATIONS
et al.
Fig. 13.2.
V(O)
= = = = = = =
et al.
13.3.3 Magnetic properties
Fig. 13.3.
et al.
et al.
13.3.4 Grain boundaries
et al. et al.
et al.
et al.
et al.
13.4 Mineralogy
et al.
13.4.1 Soil chemistry
et al.
et al.
et al.
et al. (I997a,b,c)
et al. (1997 a,b)
et al.
et al.
13.4.2 Zeolites
CHEMISTRY 197
13.4.3 Glasses
et al.
13.5 Chemistry
et al.
13.5.1 Nuclear magnetic resonance
et al.
et al.
fy
A M
et al.
et al.
NMR
et al. NMR
13.5.2 Transition-metal complexes
et al. et al.
TT
TT
et al. et al.
et al.
13.5.3 Heterogeneous catalysis
s, E:
CHEMISTRY 201
et al.
et al.
13.5.4 Esterification and hydrolysis
Fig. 13.4.
Table 13.3
Fig. 13.5.
BIOLOGY 203
13.6 Biology
13.6.1 Enzymes
et al. et al. et al. et al.
et al.
et al.
et al. et al.
13.6.2 Calcium and sodium binding by proteins
BIOLOGY 205
et al.
et al.
et al.
(cis-
13.7 Databases
et al.
et al.
et al.
et al.
14
Chemical implications of the bond valence model
14.1 Why is the bond valence model so robust?
14.1.1 The attractive force
WHY IS THE BOND MODEL SO ROBUST? 209
14.1.2 The repulsive force
R0 B
TT
TT
RQ TT
14.2 Two-body potential models
14.3 The properties of the bond graph
ELECTRON-PAIR MODEL 211
14.4 The Lewis electron-pair model
Fig. 14.1.
WHY ARE FROM
et al.
14.5 Why are cations different from anions?
Fig. 14.2.
14.6 Orbital models
ad hoc
PO^"
14.7 Electron density models
et al. et al.
a, b, c d
Fig. 14.3.
et al. et al.
14.8 The topology of the Madelung field
1
14.9 Conclusions
et al.
et al.
Bond valence parameters
Al.l Introduction
et al.
S
S = R
A1.2 Determination of bond valence parameters
Table Al.l
o2-o2-o2-F-
o2-cro2-o2-
B(pm)
(Continued)
RQ, B N,
S, s,
B
B N) RQ.
B R0
RQ B N),
B N),
RQ.
R0 B
B
B
1
RQ B
RQ
i.
RQi, RQ V
B
228 APPENDIX 1
RQi B
Rw
Rw B
RQi RQ
R0.
RQ.
B RQ.
(R) et al.
RQi
RQ
a b RQ
RQ
BOND PARAMETERS 229
RQ R0
R0
rt ct Cj
RQ RQi
et al.
R00, R0^, Ros
R00 R0^.
RQ
I997a,b,c; I999a,b; et al.
R0
RQ
et al. et al. R0
R0
230 APPENDIX 1
RQ
et al.
et al.
B
et al.'s
RQ B,
A1.3 Other bond valence expressions
rc,
a, b, c, d
e
BOND PARAMETERS 231
S
g,
S = 0 R e/c.
R e/(l +g).
e = et al.
e =
et al.
a (= RI
av
232 APPENDIX 1
R SQ,
B
Space group spectra
mw,
Table A2.1
Table
Table A2.3
8
234 APPENDIX 2
Table A2.4
Table (Continued)
111
236 APPENDIX 2
Table
Table (Continued)
238 APPENDIX 2
Table A2.9 (Continued)
1 1
12,2,2,
2,1
* *
2,1
2,1
2,1
* * 2,1
* *
2,1
Table A2.10
P2l
Appendix 3
Solution of the network equations
N&+1
Nb
Nb Nb s.
M:
s NA +
M
et al.
Vjv
V v
a, b, c, d, e,
242 APPENDIX 3
d=\-a,
e=l-2b.
c = Ib,
f=(lb-\}/2.
b = 1/21 =
c =
f=a =
e =
d =
5/27 = 011/27 =21/54 =13/27 =33/54 =
.18vu,0.41 vu,0.39 vu,0.48 vu,0.61 vu.
Appendix 4
Cation and anion bonding strengths
Table A4.1 (Continued)
Table A4.2
Table A4.3
Appendix 5
References to the ICSD and the CSD
Table A5.1
et al.
Acta Cryst.
Acta Cryst.
Acta
Cryst.
Acta
Cryst.
Can. J. Chem.
Solid State Chem.
Zeit. Kristallogr.
Proc. Japan. Acad.
Acta Cryst.
C. R. Acad. Sci.
Inorg. Chem.
Mater. Res. Bull.
Amer. Miner.
Zeit. Kristallogr.
Acta Cryst.
Acta Cryst.
Ferroelectrics
Table A5.1 (Continued}
Acta Cryst. 11,
Acta Cryst. 18,
Acta Cryst. 18,
Dokl. Akad. Nauk
SSSR239,
Zeit. Anorg. Allgem. Chem.
Ann. Acad. Sci. Fenn. Ser.
A6 Physica 313,
Nature
Acta Cryst. 26,
Zeit. Anorg. Allgem. Chem. 480,
Solid State Chem.
Acta Cryst. B26,
Amer. Miner.
60,
Zeit. Kristallogr.
90,
Acta Cryst.
Acta Cryst.
Acta Cryst.
Amer. Chem. Soc.
C. R. Acad. Sci.
et al. Physica Statu Solidi
226,
Table A5.1 (Continued)
Acta Cryst.
Naturwissenschaften
Acta Cryst.
Ark. Kemi.
Zeit. Kristallogr.
Norsk Geol.
Tijdskr.
Chem. Phys.
Ark. Kemi.
Australian
J. Chem.
Acta Cryst.
Kobutsugaku
ZasshilS,
Acta Cryst.
Acta Cryst.
Zeit.
Electrochem.
Zeit. Electrochem.
Adv. X-ray Anal.
Chem. Phys.
Acta Cryst.
Zeit. Kristallogr.
Table A5.1 (Continued}
Phys Rev. B
Solid State
Chem.
Zeit. Kristallogr.
Phys. Rev.
Miner. J. (Japan)
Acta Cryst.
Phys. Stat. Solidi
Acta
Cryst. B46,
Solid State
Comm.
Amer. Miner.
Amer.Miner.
Solid State Chem.
Powder Diffraction
Acta Cryst.
Mat. Res. Bull.
Table A5.1 (Continued)
Physica C
Physica C 235,
Acta Chem. Scand. 148,
Zeit. Kristallogr. 145,
Zeit. Kristallogr.
156,
Solid State
Comm. 24,
Carnegie Inst. (Washington)
Yearbook
Zeit. Kristallogr. 147,
Phys. C
Phys.
C
Solid
State Chem. 61,
Amer. Chem. Soc. 109,
252 APPENDIX 5
et al.
Curr. Sci.
Proc. Roy. Soc.
Land.
Can. J. Chem.
Acta
Cryst.
Acta
Cryst.
Zeit. Kristallogr.
References
Ada Cryst.
Zeit. Kristallogr. 211,
Acta Cryst.
Solid State Ionics 105,
Phys. Rev. Leu.
Phys.
Rev. B63,
Acta Cryst. B49, Adv. Inorg.
Rad. Chem. 15,
Zeit. Kristallogr. 209,
Mol. Struct. (Theochem) 496,
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List of symbols
B
NaNbR
R0
r
s
s'
S
V
f
Index
see
see
see see
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(cont.):
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see
Cr(H2O)l+
see
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see
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(A3B2(XO4)3)
see
see also
(cont.):
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(A2MN2O1) 111
see also
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(cont.):
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