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The Chemistry of Life
Chapter 2
Ch. 2 Outline of topics
The atom composition
Types of Atomic interactions
pH & buffers What is pH? What is a buffer? Why are they important?
Types of organic Molecules
Matter defined as
Anything that occupies space or has mass.
Matter is composed of atoms.
Matter is composed of atoms.
Water balloon
balloonWhich has a greater mass?
Atoms are composed of:
Quarks Superstrings
Subatomic particles affect the element
Elements are composed of identical atoms which are listed as
http://www.dreamwv.com/primer/page/s_pertab.htm
lhttp://news.yahoo.com/s/ap/20110608/ap_on_sc/sci_new_elements
Atoms interact via their electrons
forming compounds
• Ionic Interactions
• Covalent Bonds
• Hydrogen Interactions
Atoms can now form compounds by
Ionic Interactions: based on charge
Examples of Ions
CATIONANION
Example of Ionic Compound
Salt
NaCl
Our blood plasma contains Na+Cl-!!!!!
Covalent Bonds
A Sharing of Electrons
& their influence on hydrogen bonding
Hydrogen Interactions
Interaction of hydrogen with oxygen, nitrogen or fluorine
Example: H2O
“polarity”
What does it mean to say: “water is a polar molecule’?
A)The origin of water is the North Pole?
B) electrons are share unequally.
C) electrons are shared equally.
Hydrogen bonding and Lungs
Surfactant
Decreases hydrogen bonding
Chemical additional concepts important to this course are:
pH
Buffer
4 Major Organic macromolecules (of the human body)
Blood(7.4)
Acidic
Alkaline
7.0=Neutral
pH is a log scale pH=log(1/[H+])
What is a buffer?
A solution selected or prepared to minimize changes in hydrogen ion concentration which would otherwise tend to
occur as a result of a chemical reaction.
Chemicals that protect against drastic changes in pH!
Think of a buffer as a chemical “sponge”!
“bound H+”
“free H+”
A common biological buffer
H2CO3 H+ + HCO3-
Notice how the hydrogen ion moves from the “bound” state to a “free state”
The sponge!
Organic Molecules we will talk about in Human Biology.
Proteins Carbohydrates Lipids Nucleic Acids
Proteins: where do we find them? Some Examples:
Heart muscle Skeletal Muscle Nervous tissue Dietary egg, meat, milk
Amino Acids: building blocks of proteins
Amino Acids:essential versus non-
essential Basic Structure Essential Nonessential
Isoleucine Alanine
Leucine Arginine*
Lysine Aspartate
Methionine Cysteine*
Phenylalanine Glutamate
Threonine Glutamine*
Tryptophan Glycine*
Valine Proline*
Histidine Serine*
Tyrosine* Asparagine*
Selenocysteine
** Pyrrolysine**
Amino groupAcid
An overview of the 20 amino acid building blocks of
proteins
QuickTime™ and aTIFF (Uncompressed) decompressor
are needed to see this picture.
Carbohydrates (CH(CH20)n: we 0)n: we find themfind them
Some Examples Surface of our cells! Many food sources
Building blocks of carbohydrates are simple sugars!
Lipids
Examples of where we find them:Examples of where we find them:
Are a part of our cell Are a part of our cell membranesmembranes
Many of our foodsMany of our foods
Nucleic Acids
Examples of where we find them:Examples of where we find them:
In the nucleus and cytoplasmIn the nucleus and cytoplasm
Building blocks of nucleic acids are “nucleotides”.We will revisit this topic in detail later.
Completes Chapter 2
Be sure and read Chapter 2
5 Kingdom System
Monera Protista Plantae AnimaliaFungi
EukaryotesProkaryotes
Kingdom: 1 2 3 4 5
Amino Acid Structure
http://www.dreamwv.com/primer/page/s_pertab.html
http://www.webelements.com/
Web links to interactive periodic tables
Proteins:
Composed of amino acids There are 20 amino acids
Amino acids are then linked together to form proteins. Proteins are found throughout our bodies.
Bent /Coiled
Three Dimensional
Carbohydrates
What are carbohydrates chemically? What are examples of carbohydrates?
The chemical formula for carbohydrates: (CH2O)n
Note: A carbohydrate will have twice the amount of hydrogens compared to carbon and oxygen.
Carbohydrates are made from Simple sugars: monosaccharides Monosaccharides form polysaccharides
What is an example(s) of a carbohydrate?
A) glucoseB) starchC) celluloseD) glycogenE) all of the above
Lipids
Do not dissolve easily in water Fatty-like material Composed of carbon, hydrogen and oxgen
Does not “fit” formula of carbohydrates
Examples of Lipid-Like Compounds
Nucleic Acids
Deoxyribose Nucleic Acid (DNA) Ribose Nucleic Acid (RNA)
DNA: The genetic material of our cell. We will return to this topic in some detail.
Review Question 1:
What compounds are most hydrophobic? Amino acids Proteins Lipids monosaccharide
Review Question 1:
What compounds are most hydrophobic? Amino acids Proteins
Lipids monosaccharide
Review Question 2.What type of bond links one amino
acid to another amino acid?
Ionic bonds Covalent bonds Hydrophobic bonds
Review Question 2.What type of bond links one amino
acid to another amino acid?
Ionic bonds
Covalent bonds Hydrophobic bonds
Review Question 3.An atom that gives up an electron
will…
Have a negative charge Have a positive charge Be a new element Be an isotope
Review Question 3.An atom that gives up an electron
will…
Have a negative charge
Have a positive charge Be a new element Be an isotope