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The Insight Journal
Luis IbáñezKITWARE, Inc.
NAMIC and
The Insight Journal
NAMIC Software Process
Algorithm Developer
SoftwareEngineer
Insight Journal Paper
Programming Week
Phone / IMCollaboration
Subversion/CVSSandbox
Bottomless Pit ofUseless Research
ITK / VTKSlicer
Wiki ProjectPage
The Insight Journal
In Traditional Journals…
What You See
is What You Get
In fact…
That is the ONLY
thing you get
Last time we tried to share
image data in a Journal…
We were told, that the
only file formats they
could distribute were:
PowerPoint, Word and Excel…
First we laughed…
Then we cried
Does somebody here
has a Floppy ?
Does somebody here
has a USB Key ?
Intellectual
Property
OPEN
ACCESS
Success Story
C. R. Maurer, Jr., R. Qi, and V. Raghavan
"A Linear Time Algorithm for Computing Exact Euclidean Distance Transforms of Binary Images in Arbitrary Dimensions“
IEEE - Transactions on Pattern Analysis and Machine Intelligence
25(2): 265-270, 2003
2002-2003
Success Story
2006
– University of Iowa
– Hans Johnson & Vamsi Jammalamadaka
– Atlas-Based Segmentation
– Bottle neck: Distance map computation
– Future work: try Maurer’s published method
Success Story
February 17 2006
9:26 email about new Insight Journal submission
12:30 print and read documentation while
12:45 download source code, replace method in their
application and compile it
13:00 run on one dataset
Success Story
February 17 2006
13:03 curse because it could not have possible
be computed in only 3 minutes
13:10 Compare with previous results: Do dance of joy
because new results are nearly the same as the old ones
16:00 Write an Insight Journal review
40 minutes of IJ
has more impact than
3 years of IEEE-PAMI
The Insight Journal
Technical work must be reproducible
Papers should be publicly accessible
Fully Electronic publishing
Not limited to ITK
Brought to you by ISC
The Insight Journal
Reproducibility requires sharing
– Source code
– Images
– Parameters
Open source
– Existing algorithms provide services
– New algorithms should be made available to others
Image Processing Method
AlgorithmInput
Image(s)
Parameters
OutputImage(s)
Submission for the IJ
Code
InputData
JournalRepository
WebSite
ResultsData
Author
BuildMachines
PDF doc
Insight JournalManager
Author
SubmitsProject
DSpace
StoresProject
AutomaticTesting
Environment
PostsResults
Dashboard
SubmitsEntry
Reviewer
ReviewsProject
Process Flow
SendsCode
Benefits of the Insight Journal Allows sharing your Source Code
– Faster and larger impact on the community
Immediate feedback from Readers and Reviewers
– Open Dialog / Forum
No Limitations
– No page limitations
– No limit or charges for color figures
– Accepting additional electronic material
Benefits of the Insight Journal Indexed by Google
Post revisions of papers and code
Richer readers experience
– Source code available
– Original parameters and images available
– Reader can try on their own data
Accepts practical contributions
– complimentary to full Journal Papers
Benefits of the Insight Journal No Time Constraints
– Continuous submission process
– Continuous peer-review
– Continuous submission of revision (paper/code)
Thanks to not using Paper !
http://www.Insight-Journal.org
• Comparison of output images
• Publicly available
• Tests for non-trivial images
• Reviewers and readers can use it as a first view of the paper.
Results Verification