FileFormats.VCFtools.PLINK

mapping to

reference

variant calling filteringRAW

readsmore

filtering

FASTQ

filtering &

analyses

SAM/BAM VCF/BCF VCF/BCF various

more analyses

VCF/BCF PED/BED

Pipeline

File format

tomorrow

mapping to

reference

variant calling filteringRAW

readsmore

filtering

FASTQ

filtering &

analyses

SAM/BAM VCF/BCF VCF/BCF various

more analyses

VCF/BCF PED/BED

Pipeline

File format

tonight

now!

http://evomics.org/learning/population-and-speciation-genomics/fileformats-vcftools-plink/