Robert Kuhn, PhDCenter for Biomolecular Science and EngineeringCenter for Biomolecular Science and Engineering
University of California, Santa CruzUniversity of California, Santa Cruz
FaceBase kick-off meetingFaceBase kick-off meeting
Bethesda, MDBethesda, MD
November 16, 2009November 16, 2009
UCSC Genome Browser
Thanks!• Funding: NHGRI, NCI, NICHD, NIDCR, HHMI, QB3, SU2C
• Data: NCBI, Ensembl, UniProt, Baylor, WUSTL, UWash, IMIM, OMIM, numerous other contributors
• UCSC Browser team:
– David Haussler – PI– Jim Kent – Browser Concept, BLAT, Team Leader, Co-PI– Mark Diekhans, Fan Hsu, Angie Hinrichs, Kate Rosenbloom, Hiram
Clawson, Rachel Harte, Galt Barber, Andy Pohl, Tim Dreszer, Larry Meyer, Mike Pheasant, Brian Raney, Melissa Cline – Engineering
– Donna Karolchik, Robert Kuhn, Ann Zweig, Kayla Smith, Brooke Rhead, Pauline Fujita, Katrina Learned – QA, Docs, Support
– Ting Wang, Jing Zhu, Steve Benz, Zach Sanborn – Cancer Browser– Jorge Garcia, Victoria Lin, Erich Weiler, Alex Wolfe – KiloKluster, Sys-
admin
Browser: interface to database
softwaresoftware
database
tables
browser
details track (mapping)primary tablesecondary tables
Custom Tracks
• View private data in context of all other UCSC-hosted data.
• Intersect with public data.
• Save custom track data in Sessions.
UCSC Browser Mirrors
mirror sites:
DukeCornell
Medical College of WisconsinCopenhagen
Brisbane
see also wikipedia for links
Variation Resources
• chromosome
Xq26.3
dbSNP 129
Database of Genomic Variants
Segmental Duplications