Download pdf - EWA DEELMAN, Ph.D....Page | 2 Ewa Deelman, Ph.D. Guest lectured in parallel computation courses. ... • External Examiner for Masters’ Candidate, McGill University, 2002. ... •

4676AdmiraltyWay

MarinadelRey,CA91302310-448-8408|www.isi.edu/~deelman

[email protected]

EWADEELMAN,Ph.D.

RESEARCHINTERESTS

Managinglarge-scaleworkflowsanddataindistributedenvironments.DesignandexplorationofcollaborativescientificenvironmentsbasedonGridandCloudtechnologies.Performanceoptimizationinparallelanddistributedenvironments.

APPOINTMENTS2009-present

2003-2009

2016-present2012-20152007-20122002-20072000-2002

1997-2000

ResearchAssociateProfessor,USCComputerScienceDepartmentResearchAssistantProfessor,USCComputerScienceDepartmentUniversityofSouthernCalifornia,LosAngeles,CAResearchDirector,ScienceAutomationTechnologies,USCInformationSciencesInstituteAssistantDirector,ScienceAutomationTechnologies,USCInformationSciencesInstituteProjectLeader,USCInformationSciencesInstituteResearchTeamLeader,USCInformationSciencesInstituteComputerScientist,USCInformationSciencesInstituteMarinadelRey,CAScientific applications need to make use of a number of heterogeneous and oftendistributedresourcesthat includebothdataandcomputations.Myresearchfocusesondeveloping tools and techniques that enable easy, efficient, and reliable execution ofcomplex applications in distributed environments. Particular emphasis is given tomanagingapplicationsspecifiedascomputationalworkflows.Myresearchencompassesa number of areas including task scheduling, performance optimization, reliabilitytechniques,resourceprovisioning,andworkflowmonitoringandtroubleshooting.Oneofthe toolsdeveloped inmygroup is thePegasusWorkflowManagement System that isbeingusedday-to-dayinanumberofscientificapplicationsincludingastronomy,biology,earthquakescience,gravitational-wavephysicsandothers.Theapplicationsmakeuseoftheir own computing clusters, national cyberinfrastructure, and Cloud computingresources. My research interests also include data and metadata management inscientificapplications.SeniorSoftwareDeveloper,UniversityofCaliforniaLosAngeles,CAConductedresearchinparallelsimulationofmessage-passingprogramsandperformancemodeling.Participated in the POEMS project, which aims to design a system for PerformanceOriented End-to-End Modeling of Large Heterogeneous Adaptive Parallel/DistributedComputer/Communication Systems. Major development was geared towards efficientandaccuratesimulationofmessage-passingprograms(suchasthoseusingMPI)onhighperformance systems (such as the IBM SP). New SMP-cluster architectures weremodeled. Compiler optimizations which improved the efficiency and scalability of thesimulator where investigated. The POEMS project involves a collaboration betweenseveral universities: Purdue, Rice, UCLA,U.T. Austin, U.T. El Paso, U. ofWisconsin andLANL.

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Page|2 EwaDeelman,Ph.D.

Guestlecturedinparallelcomputationcourses.Guidedtheresearchofgraduatestudents.

EDUCATION

1997

1991

1987

DoctorofPhilosophyinComputerScience RensselaerPolytechnicInstitute Troy,NY"PerformanceOptimizationofParallelDiscreteEventSimulationofSpatiallyExplicitProblems"Developed an object oriented Parallel Discrete Event Simulation System that uses theoptimisticapproach toeventprocessing.The systemwasdesigned to runonanMIMDmachine and tested on an IBM SP. In order to achieve good performance, newsynchronizationtechniqueswereformulated.Developedanewalgorithmtocontinuouslymonitor the progress of all simulation processes. Designed a new approach for rollingback computation in spatially explicit problems. This approach resulted in a speedupclose to linear over a single processor run. Load balancing techniques were alsoinvestigated.ThesisAdvisor:Prof.BoleslawSzymanskiMasterofScienceinComputerScienceStateUniversityofNewYork,NewPaltz,NYBachelorofArtsinMathematicsWellsCollege,Aurora,NY

PROFESSIONALACTIVITIES

• WorkshopsChair,SC’16TechnicalProgram,SaltLakeCity,November2016• PostersChair,Cluster2016,TaipeiTaiwan,September2016• EditorialBoardMember,InternationalJournalofHighPerformanceComputingApplication,

2015-• EditorialBoardMember,ACMInternationalConferenceProceedingSeries,2015-• Co-TechnicalPapersChairsfortheSC’15TechnicalProgram,Austin,TX,November2015• 11thInternationalConferenceonParallelProcessingandAppliedMathematics(PPAM),Vice-

ChairofProgramCommittee,Krakow,Poland,September2015• 8thIEEE/ACMInternationalConferenceonUtilityandCloudComputing,Tutorialsco-chair,

Cyprus,December2015• Co-areachairfortheSC’14TechnicalProgram(CloudsandDistributedComputingarea),

NewOrleans,2014• BestPaperCommitteeMember,SC’14NewOrleans• MemberoftheEditorialboard,JournalofGridComputing,2013-• SteeringCommitteeMember,IEEEeScienceConference,2013-• SteeringCommitteeMember,IEEE/ACMInternationalSymposiumonCluster,CloudandGrid

Computing,2013-• SteeringCommitteeMember,e-ScienceAllHandsMeetingFoundation,2008-• AssociateEditorresponsibleforGridandCloudComputingfortheScientificProgramming

Journal,2002-2014• ViceProgramChair,InternationalConferenceonParallelProcessingandApplied

Mathematics.PPAM,Poland,September2013

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ProgramCommitteeMember(selected)

• Chair,GlobalGridForumWorkflowManagementResearchGroup,2003-2010• Co-ChairNSFWorkshopSDCI/STCIastheSoftwareSupplyChainoftheNational

CyberinfrastructureWorkshop,January2010• MentorfortheCRA-WDistributedResearchExperiencesforUndergraduates(DREU)

program,2008,2010• Co-Chair,WorkshoponWorkflowsinSupportofLarge-ScaleScience,inconjunctionwithSC

2008,SC2009,and2010• FounderandChair,WorkshoponWorkflowsinSupportofLarge-ScaleScience,in

conjunctionwithHPDC2006,and2007June2006&2007• Co-GuestEditor,ScientificProgrammingJournal,SpecialissueonDynamicComputational

Workflows:Discovery,Optimization,andScheduling,2007• Co-GuestEditorJournalofGridComputing,SpecialIssuededicatedtoWorkflow

ManagementinGrids,2006• Co-Editor,Workflowsine-Sciencebook,Springer2007• WorkshopChairApplicationsandMiddlewareGridWorkshop,September2005• Lecturer,GlobalGridForumSummerSchool,July2004• OrganizingCommitteeMember,GGFWorkshoponWorkflowsinGrids,2004.• Co-EditoroftheSpecialIssueoftheScientificProgrammingJournaldevotedtoGrid

Computing,Volume10,Number2,2002.• WorkshopChair,ApplicationsGridWorkshop,September2003,2005,2007• PanelmemberattheInternationalConferenceonDependableSystemsandNetworkpanel

on"DependabilityandtheGrid",June2002.• TechnicalBoardmemberoftheGridlabproject,anEUfundedproject.• PhDCommitteemember,RensselaerPolytechnicInstitute,2002.• ExternalExaminerforMasters’Candidate,McGillUniversity,2002.• GeneralCo-Chair,ofthe15thWorkshoponParallelandDistributedSimulation,PADS2001,

LakeArrowhead,CA,2001.• OrganizerSo-CalSeminaronParallelComputingSystems,January22,1999.• OrganizingCommitteeChair,ThirdWorkshoponLanguages,Compilers,andRun-Time

SystemsforScalableComputersheldatRensselaerPolytechnicInstitute,May1995.• PipelinkProjectMember,Lecturedhigh-schoolstudentsaboutresearchperformedin

ComputerScience.ThegoalofthisprojectistointerestandsupportyoungwomeninComputerScience,1995.

• TheInternationalSupercomputingConference(ISC),2016,Germany• 16thIEEE/ACMInternationalSymposiumonCluster,CloudandGridComputing(CCGrid

2016),Columbia• 30thIEEEInternationalParallel&DistributedProcessingSymposium(IPDPS),2016,Chicago• 11thIEEEInternationalConferenceoneScience,2015,Germany• 10thIEEEInternationalConferenceoneScience,2014,Brazil• 14thIEEE/ACMInternationalSymposiumonCluster,CloudandGridComputing,2014• 2ndWorkshoponSustainableSoftwareforScience:PracticeandExperiencesinconjunction

withSC’14,2014• 9thIEEEInternationalConferenceoneScience,2013• 13thIEEE/ACMInternationalSymposiumonCluster,CloudandGridComputing• The8ThWorkshoponWorkflowsinSupportofLarge-ScaleScience,Denver,November2013• FirstWorkshoponSustainableSoftwareforScience:PracticeandExperiences(WSSSPE),

Denver,CO2013• IEEEBigData2013,SantaClara,CA,October2013• The8thInternationalConferenceonP2P,Parallel,Grid,CloudandInternetComputing,

Compiegne,France,October2013• InternationalConferenceonCloudandGreenComputing,Karlsruhe,Germany,September,

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2013• AMGCC’13(The1stInternationalWorkshoponAutonomicManagementofGridandCloud

Computing),Miami,Florida,August,2013• GridandCloudComputinginBiomedicineandLifeSciences,Porto,Portugal,June2013• BIGPROV'13:InternationalWorkshoponManagingandQueryingProvenanceDataatScale,

Genoa,March2013,Italy• WorkshoponWorkflowsinSupportofLarge-ScaleScience,inconjunctionwithSC2012,Salt

LakeCity,November2012• The5thIEEE/ACMInternationalConferenceonUtilityandCloudComputing,Chicago,IL

November2012• The12thIEEE/ACMInternationalSymposiumonCluster,CloudandGridComputing(CCGrid)

2012,Ottawa,Canada,May2012• ScientificandStatisticalDatabaseManagementConference2011,PortlandOregon• HPDC2011,SanJose,CA,2011• WorkshoponWorkflowsinSupportofLarge-ScaleScience,inconjunctionwithSC2011• DataIntensiveComputingintheClouds(DataCloud2011),SanJose,CA,2011• IEEE/ACMInternationalSymposiumonCluster,CloudandGridComputing(CCGrid2011),

NewportBeach,CA,2011• IPDPS2011PhDforum,Anchorage,Alaska,2011• IPDPS2011,AnchorageAlaska,2011• e-Science2010,Brisbane,Australia,2010• SC2010,NewOrleans,2010• CCGrid2010,Australia,May2010• Grid2010,Brussels,Belgium,October2010• 4thInt’lWorkshoponWorkflowsystemsine-Science(WSES09),Shanghai,China,2009• HighPerformanceDistributedComputing(HPDC2009),Garching,Germany,June2009• SC2008,AustinTexas,November2008• Grid2008,Tsukuba,Japan,September2008• HighPerformanceDistributedComputing(HPDC2008),Boston,MA,June2008• e-Science2007,Bangalore,India,December2007• NSF/MellonWorkshoponScientificandScholarlyWorkflow.Oct3-5,2007,Baltimore,MD• CoreGRIDWorkshoponGridMiddleware,Dresden,June18-19,2007• HighPerformanceDistributedComputing(HPDC2007),MontereyBayCalifornia,June27-29• IEEEInternationalConferenceonGridComputing(Grid2007)(ViceProgramchairfor

Scheduling,ResourceManagementandRuntimeEnvironments),Grid2006,Grid2005• SecondInternationalConferenceonGridcomputing,high-performance

andDistributedApplications"(GADA'07)• WorkflowSystemsine-Science2007,InternationalConferenceonComputationalScience

(ICCS2007)• The13thInternationalConferenceonParallelandDistributedSystems,Hsintu,Taiwan,

December2007• 3rdInternationalWorkshoponGridandPeer-to-PeerbasedWorkflows(GPWW),Brisbane,

Australia,2007• IEEEInternationalSymposiumonClusterComputingandtheGrid,CCGrid2007,2006,2005• CoreGRIDWorkshoponGridMiddleware2006• FirstInternationalMulticonferenceonComputerScienceandInformationSystems• The2006InternationalConferenceonHighPerformanceComputingandCommunications,

Gridandclustercomputingtopic.2006.• InternationalWorkshoponWorkflowSystemsinGridEnvironments(WSGE06),October21-

23,2006,Changsha,China.• ChallengesofLargeApplicationsinDistributedEnvironmentsWorkshop,CLADE2009,2008,

2007,2006,2005,2004,2003

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Reviewer

• FourthInternationalSymposiumonParallelandProcessingandApplications(ISPA'06),(SoftwareandApplicationsTrack),Sorrento,Italy,December2006.

• 2ndInternationalWorkshoponGridandPeer-to-peerbasedWorkflows(GPWW2006),Vienna,AustriaonSeptember,2006,and2005

• Scientificworkflowmanagementine-Science,inconjunctionwiththeInternationalConferenceonComputationalScience(ICCS2006),May2006.

• StatisticalandScientificDatabaseManagement(SSDBM),2006,2005• ICIW2006WebService-basedSystemsandApplicationstrack,February2006• InternationalWorkshoponScientificInstrumentsandSensorsontheGrid,December2005.• SemanticInfrastructureforGridApplicationsatCCGrid2005• EuropeanGridConference2005• WorkshoponWebandGridServicesforScientificDataAnalysis(WAGSSDA),tobeheldin

conjunctionwiththeInternationalConferenceonParallelProcessing(ICPP-2005)• IEEEInternationalConferenceonServicesComputing(SCC2004)• InternationalConferenceonSemanticsforaNetworkedWorld2004• 2ndEuropeanAcrossGridsConference,2004• SC2003,November2003• HeterogeneousComputingWorkshop,2003,2004Reviewer for journals such as the Journal of Grid Computing, Future Generations of ComputerSystems,JournalofParallelandDistributedComputing,IEEEIntelligentSystems,Informatica,IEEETransactions on Parallel and Distributed Systems, Concurrency and Computation: Practice andExperience,ACMComputingSurveysReviewerforDOE,NSF,UniversityofCaliforniaOfficeofthePresident,andEuropeanCommission,andotherEUfundingagencies.

INVITEDTALKS

• CRA-W/CDC Distinguished Lecture event at the SoutheastWomen in Computing Conference(SEWIC),November,2015

• PanelistattheWhiteHouseNationalStrategicComputingInitiativeWorkshop,October2015• 11thIEEEInternationalConferenceoneScience,August2015,Germany• SupercomputingFrontiers2015,March2015• OakRidgeNationalLaboratory,Seminar,September2014• UniversityofQueensland/MonashUniversity(MURPA/QURPA)Seminar,Summer2014• SonomaStateUniversity,CA,ComputerScienceColloquium,Spring2014• International Conference on Parallel Processing and Applied Mathematics. PPAM, Torun,Poland,September2013(keynote)

• Focused TechnicalWorkshop on Network Issue for Life Sciences Research – LLNL, July 2013(invitedtalk)

• Laurence Berkeley National Laboratory, “Workflow Technologies for Science Automation”,Berkeley,CA,May2013(invitedtalk)

• AGH University of Science and Technology, “Science Platforms: Managing Workloads andResources”,Krakow,Poland,March2013(invitedtalk)

• PanelMember,CENIC100GandBeyondWorkshop,SanDiego,CA,March2013• Polish-Japanese Institute of Information Technology, “Science Platforms: Research andTechnologiestoComputationalScienceinVirtualEnvironments”,Warsaw,Poland,March2013,(seminar)

• Institute of Fundamental Technological Research, Polish Academy of Sciences, “SciencePlatforms:ManagingComputationalWorkloadsandResources”,Warsaw,Poland,March2013,(DistinguishedLecture)

• HUBbub’12, “Managing Workflows Within HUBzero: How to Use Pegasus to Execute

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ComputationalPipelines”,Indianapolis,Indiana,September2012(keynote)• Clusters, Clouds, and Data for Scientific Computing, 2012, “Hosted Science: How to supportcomplexscientificapplicationsonthecloud”,LyonFranc,September2012(invitedtalk)

• EuroPar’12,Rhodes,Greece,August2012,(keynote)• InvitedLectureSeries,AGHUniversityofScienceandTechnology,Krakow,Poland,March2012• The 6thWorkshop onWorkflows in Support of Large-Scale Science, Seattle, November 2011,(keynote)

• USC Global Conference, Hong Kong, October 2011 (panelist, The Grand Challenges ofEngineering)

• International Supercomputing Conference (ISC) Cloud Conference, Mannheim, Germany,September2011

• International Conference on Parallel Processing and Applied Mathematics. PPAM, Torun,Poland,September2011(keynote)

• CracowGridWorkshop,Cracow,Poland,October2010.(keynote)• International Conference on Parallel Processing and Applied Mathematics. PPAM, Wroclaw,Poland,September2009

• CracowGridWorkshop,Cracow,Poland,October2008.(keynote)• CoreGridWorkshop,Crete,Greece,April2008.• AAAI Spring Symposium on Semantic Scientific Knowledge Integration, Stanford University,March2008.

• TheInternationalWorkshoponPerformanceAnalysisandOptimizationofHigh-EndComputingSystems,inconjunctionwithSC’07,November2007

• International Conference on Parallel Processing and Applied Mathematics. PPAM, Gdansk,Poland,September2007

• ComputerScienceDepartmentColloquium,SouthamptonUniversity,UKApril2007• ComputerScienceDepartmentColloquium,King’sCollege,London,UK,April2007• Colloquium,UniversityofVienna,Austria,June2007• Workshop on Scientific Workflows and Business workflow standards in e-Science, inConjunctionwithe-Science2006,Amsterdam,December2006

• WorkflowOptimizationinDistributedEnvironments,Edinburgh,October2006• ManchesterUniversity,SchoolofComputerScienceSeminar,October2006• LouisianaStateUniversity,ComputerScienceDepartmentSeminar,September2006• CyberinfrastructureforOceanObservationsWorkshop,September2006• Partnerships in Innovation: Serving a Networked Nation conference, National Archives andRecordsAdministration,November2004

• AstronomicalDataAnalysisSoftware&Systems(ADASS),October2004• SC4DEVO:ServiceCompositionforDataExplorationintheVirtualObservatory,July2004• SSDBM04panelonDataManagementontheGrid,June2004• GroundSystemArchitecturesWorkshop(GSAW2004),April2004• SDSCComputationalScienceSeminarSeries(CSSS).,January2004• Rensselaer Polytechnic Institute,GriPhyN: Data-Intensive Science in Grid Environments, Troy,NY,January2002.

• VIRGO Laboratory, GriPhyN (Grid Physics Network) and LIGO: Data-Intensive Science in GridEnvironments,Cascina,Italy,September2001.

• International Conference on Parallel Processing and Applied Mathematics. GriPhyN (GridPhysics Network): Enabling Data Intensive Science in Grid Environments. Naleczow, Poland,September2001.

• Poznan Supercomputing and Networking Center, GriPhyN: Data-Intensive Science in GridEnvironments,Poznan,Poland,September2001.

• MardiGrasConference,GriPhyN(GridPhysicsNetwork):BuildingaDataGridInfrastructureforExperimentalPhysics,BatonRouge,LA,February2001.

• University of Texas at El Paso,MPI-Sim, anMPI Simulator in POEMS (Performance OrientedEnd-to-EndModelingSystem),ElPaso,TX,August2000.

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• USC/ISI,POEMS:PerformanceOrientedEnd-to-EndModelingSystem,MarinaDelRey,CA,July2000.

• AerospaceCorporation,OptimizationinParallelDiscreteEventSimulation,LosAngeles,CA,July1997.

• Institute of Fundamental Technological Research, Polish Academy of Sciences, Performance Optimization in Parallel Discrete Event Simulation, Warsaw, Poland, June 1997.

TEACHINGACTIVITIES

• Lectureratthe2ndKarlsruheSummerSchoolonServiceResearch,September2013• GuestLecturesattheAGHUniversityofScienceandTechnology,March2013• USC,ComputerScienceDepartment,CS599IntroductiontoGridComputing(Graduatelevel),

Fall2007• UCLA,DepartmentofComputerScience,GuestLecturer

o CS133,ParallelandDistributedProgramming,anundergraduatelevelcourseinparallelprogramming.Itcoversarchitecturalandlanguagemodelsofparallelism.Theemphasisislearningtowriteparallelprograms.WinterTerm1998,and1999.

o CS233A,ParallelProgramming,graduatecourseinparallelprogrammingthatcoversinmoredepththetopicsofCS133.Emphasisisonexaminingstateoftheartresearchandindividualresearchprojects.WinterTerm1998,and1999.

o CS239,ParallelSimulation,afollow-upcoursetoCS233A.SpringTerm1998.

FELLOWSHIPSHONORS

• High-PerformanceParallelandDistributedComputing(HPDC)2015achievementaward,whichispresentedtoanindividualwhohasmadelong-lasting,influentialcontributionstothefoundationsorpracticeofthefieldofhigh-performanceparallelanddistributedcomputing,June2015

• CENICStarPerformerfortheADAMANTproject,January2014• CorporationforEducationNetworkInitiativesinCalifornia’s(CENIC)2013Innovationsin

NetworkingAwardforExperimental/DevelopmentalApplicationsfortheADAMANT(AdaptiveData-AwareMulti-domainApplicationNetworkTopologies)Project,March2013

• BestPaperaward,e-Science2006,Amsterdam,Netherlands:E.Deelman,S.Callaghan,E.Field,H.Francoeur,R.Graves,N.Gupta,V.Gupta,T.H.Jordan,C.Kesselman,P.Maechling,J.Mehringer,G.Mehta,D.Okaya,K.Vahi,andL.Zhao,ManagingLarge-ScaleWorkflowExecutionfromResourceProvisioningtoProvenancetracking:TheCyberShakeExample,Proceedingsofe-Science,Amsterdam,TheNetherlands,2006.

• BestPaperaward,15thWorkshoponParallelandDistributedSimulation,LakeArrowhead,CA,USA;15-18May2001:E.Deelman,R.Bagrodia,R.Sakellariou,V.Adve.ImprovingLookaheadinParallelDiscreteEventSimulationsofLarge-ScaleApplicationsUsingCompilerAnalysis.Proceedings15thWorkshoponParallelandDistributedSimulationp.5-13,LakeArrowhead,CA,USA;15-18May2001.

• GeneralElectricFoundationFellowship,RensselaerPolytechnicInstitute,1993-1994.• SpecialDistinctioninthefieldofMathematics,WellsCollege,1987.

MEDIA

CITATIONS • “HowISI’sPegasushelpedscientistsmakethediscoveryofthecentury”,USCViterbiSchoolof

Engineering,http://viterbi.usc.edu/news/news/2016/isi-gravitational-waves-software-pegasus.htm

• “Caltechwasn’ttheonlySoCalschoolhelpingdiscovergravitationalwaves”,mentionstheuseofPegasusformanagingworkflowsusedtodiscovergravitationalwaves,SouthernCaliforniaNPRStation:KPCC,February11,2016http://www.scpr.org/news/2016/02/11/57446/caltech-wasn-t-the-only-socal-school-helping-disco/

• EwaDeelmanAwardedPrestigiousHPDCHonor,September2015,http://www.isi.edu/news/story/251

• CENICStarPerformer:EwaDeelman,USC,January2014,http://www.cenic.org/p=1554/

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• ProjectADAMANTWinsInnovationsinNetworkingAwardforXDApps,March13,2013,http://www.cenic.org/p=356/

• HowcanweuseHPCplatformstohelpdigoutnewexoplanets?,iSGTW,April3,2013,http://www.isgtw.org/feature/how-can-we-use-hpc-platforms-help-dig-out-new-exoplanets

• Pegasusprojectleader,WhiteHouseadvancedmanufacturingadvisertospeakatHUBzeroconference,iTapNewsroom(PurdueITNews),July2012https://hubzero.org/news/hubbub2012-speakers

• $27millionawardbolstersresearchcomputinggrid,R&DMagazine,June2012http://www.rdmag.com/news/2012/06/27-million-award-bolsters-research-computing-grid

• NHGRIbroadenssequencingprogramfocusoninheriteddiseases,medicalapplications,NIHNews,July2012https://www.genome.gov/27546261

• GrantstoUSCFacultyTop$100Million,USCNews,November11,2009,http://uscnews.usc.edu/university/grants_to_usc_faculty_top_100_million.html

• ISIResearchersWillSupportNewBrainGeneExpressionProject,ISINews,November2,2009http://www3.isi.edu/about-news_story.htm?s=220

• USCNeuroscientiststoMapGeneExpression,USCNews,October5,2009http://uscnews.usc.edu/science_technology/usc_neuroscientists_to_map_gene_expression.html

• ViterbiSchool'sISIPartofFutureGridTestBed,USCViterbiNews,September2009http://viterbi.usc.edu/news/news/2009/viterbi-school-s213206.htm

• ISIPartofFutureGridTestBed,ISINews,September11,2009http://www3.isi.edu/about-news_story.htm?s=216

• Imageoftheweek-Earth-quakingscienceinHollywood,internationalScienceGridthisWeek,iSGTWonline,January2008,http://www.isgtw.org/?pid=1000848

• Feature-Montagearisingstaringrid-enabledskymosaics,internationalScienceGridthisWeek,iSGTWonline,December2007,http://www.isgtw.org/?pid=1000731

• Feature-Pegasusinvitesnewcommunitiestosaddleup,internationalScienceGridthisWeek,iSGTWonline,September2007,http://www.isgtw.org/?pid=1000664

• ISILeads$13.8MillionE-ScienceEfforttoTameTerabyteTorrents,ISINews,http://www.isi.edu/news/news.php?story=165

• RensselaerSupercomputersBattleLymeDisease,RensselaerPolytechnicInstituteReviewVol.17No.18,June14,1996

GRANTS • PI,PredictiveModelingandDiagnosticMonitoringofExtremeScienceWorkflows,DOE,9/2014-8/2017,$3,824,927

• Co-PI,CIF21DIBBs:Domain-awaremanagementofheterogeneousworkflows:Activedatamanagementforgravitational-wavescienceworkflows,NSF,10/2014-9/2017,$444,850

• PI,XSEDEScientificWorkflowApplicationSupportSpecialist,(XSEDE),9/2013–06/2015,NSF,$220,000

• Co_PI,TheCenterforGenomicStudiesofMentalDisorders,06/2013–05/2018,NIMH,$1,879,412

• Co-PI,PAGEIICoordinatingCenter,06/13–05/17,NHGRI,$435,999• PI,CollaborativeResearch:CC-NIEIntegration:TransformingComputationalSciencewithADAMANT(AdaptiveData-AwareMulti-domainApplicationNetworkTopologies),January2013-December2014,NSF,$204,070IntegratingresourceprovisioningandworkflowexecutiononClouds.

• Sr.Personnel,TheOpenScienceGridTheNextFiveYears:DistributedHighThroughputComputingfortheNation’sScientists,Researchers,Educators,andStudents,August2012-July2017,NSF,$913,748SupportingcomputationsontheOpenScienceGrid.

• Co-PIdV/dt–AcceleratingtherateofprogresstowardsextremescalecollaborativeScience,September2012-August2015,DOE,$744,606Conductingresearchinresourceplanningondynamicresourcesforcomplexapplications.

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• PI,SI2-SSI:DistributedWorkflowManagementResearchandSoftwareinSupportofScience,April2012-March2016,NSF,$2,153,597ContinueddevelopmentandsupportofthePegasusWorkflowManagementSystem.

• Co-PIrSeq:RobustandPortableWorkflow-basedtoolsformRNAandGenomere-sequencing,February2012-December2014,NIH,$338,330DevelopingandsupportingRNA_Seqworkflows.

• Co-PI,EarthCubeCommunityWorkshop:DesigningARoadmapforWorkflowsinGeosciences,April2012-March2013,NSF,$15,432OrganizingandparticipatingindiscussiononthefutureoftheGeosciencescyberinfrastructure.

• PI,TheRoleofSoftwareandSoftwareInstitutesinComputationalScienceOverTime,October2012-September2013,NSF$74,430 OrganizingaworkshopregardingthefutureofCyberinfrastructure.

• Sr.Personnel,Geoinformatics:APetascaleCyberfacilityforPhysics-BasedSeismicHazardAnalysis(SCECPetaSHA3Project),NSF,July2010-June2012,$174,000Supportingtheearthquakescienceworkflows.

• Sr.Personnel,SustainingandExtendingtheOpenScienceGrid:ScienceInnovationonaPetaScaleNationwideFacility,NSFDecember2009-August2011,$128,000Providingusersupportfortheproject

• PI,SDCI/STCIastheSoftwareSupplyChainoftheNationalCyberinfrastructureWorkshop,NSF,2/1/2010-1/31/2011,$89,968OrganizingaworkshopforthePImeetingfortheNSFOfficeofCyberinfrastructureSDCIandSTCIprograms

• Co-PI,TranscriptionalAtlasofHumanBrainDevelopment,NIH,9/1/2009-8/31/2011, $492,900Developingworkflowsforgeneexpressionstudies

• Sr.Personnel,FutureGrid:AnExperimental,High-PerformanceGridTest-bed,NSF,10/1/2009-9/30/2013,$725,000Developingworkflowtechnologiesforvirtualexecutionenvironments

• PI,STCI:MiddlewareforMonitoringandTroubleshootingofLarge-ScaleApplicationsonNationalCyberinfrastructure,NSF,9/1/2009-8/31/2012,$1,875,830Developingefficient,onlineworkflowmonitoringandtroubleshootingcapabilities.

• PI,STCI:IntegratedResourceProvisioningAcrosstheNationalCyberinfrastructureinSupportofScientificWorkloads,NSF,9/1/09-8/31/2012,$1,611,038Developingtoolsthatcanprovisioncomputationalresourcesinstaticanddynamicsmanner.

• Co-PIDC:Medium:IntelligentDataPlacementinSupportofScientificWorkflows,NSF,09/01/2009-08/31/2012,$405,000Developingalgorithmsforcouplingworkflowanddatamanagementsystems.

• Co-PI,CenterforGenomicStudiesofMentalDisorders,NationalInstitutesofHealth,10/01/08-9/30/2013,$2,250,000DevelopmentoftheCyberinfrastructureandworkflowtechnologiesforthecoordinatingcenter.

• Sr.Personnel,GenomicPsychiatryCohort,NationalInstitutesofHealth,10/2008-9/2013,$300,000DevelopmentoftheCyberinfrastructureforapsychiatricstudy.

• Co-PI,NHGRIEpiGenVarCoordinatingCenter,NationalInstitutesofHealth,7/1/2008-6/30/2012,$500,000DevelopmentoftheCyberinfrastructureandworkflowtechnologiesforthecoordinatingcenter.

• PI,SupportingOceanModelingWithWorkflowTechnologies,JetPropulsionLaboratory,6/1/2008-5/31/2009,$70,000Developmentofworkflowsforandoceanforecastingsystem.

• PI,SDCINMIImprovement:Pegasus:FromConcepttoExecution---MappingScientificWorkflowsontotheNationalCyberinfrastructure,NationalScienceFoundation,09/01/2007-08/31/2012,$1,700,000

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HardeningofthePegasusworkflowsoftwarethatmanagesexecutionofcomplexscientificworkflowsondistributedresources.

• PI,DesigningScientificSoftwareoneWorkflowataTime,NationalScienceFoundation,10/1/2007-9/30/2010,$313,556.Exploringtheuseoftheworkflowparadigminthecontextoflarge-scalesoftwaredesign.

• Sr.Personnel,CyberinfrastructureinSupportofResearch:ANewImperative,NationalScienceFoundation,10/01/2004-09/30/2008,$250,000Thisproject,leadbyNCSAdevelopedtechnologiesnecessarytosupportawiderangeofNSFapplications.

• Co-PI,ScalableCross-OrganizationThreatandEventDiscoverythroughGridWorkflows,AirForceResearchLab,10/1/2006-9/30/2010,$2,104,000Thisproject,leadbyISIdevelopsnewtechniquestooptimizeworkflowsrepresentinglarge-scaledataminingapplicationsandtoprovideseamlessaccesstodistributeddatasources.

• Co-PI,CSR-AES:CollaborativeResearch:IntelligentOptimizationofParallelandDistributedApplications,NationalScienceFoundation,08/01/2006–07/31/2009,$215,452.Thisproject,leadbyISIdevelopsnewtechniquestooptimizeworkflowsindistributedSystems.

• Sr.Personnel,EnablingEarthquakeSystemScienceThroughPetascaleCalculations(PetaShake),NationalScienceFoundation,10/01/2007-9/30/2009,$200,000.Providingacyberinfrastructureandworkflowtechnologiesforearthquakescienceapplications.

• PI,Pegasus:SupportingLIGOWorkflowsontheOpenScienceGrid,NationalScienceFoundation,11/1/2006–10/31/2007,$102,000Thisproject,leadbyISIwillenableefficientexecutionofgravitational-wavephysicsapplicationsonlargegriddeploymentsinconjunctionwiththeefficientdatamanagement.

• Co-PI,Neuroscience:CollaborativeResearch(CRCNS):AssemblingVisibleNeuronsforSimulations:MergingofHigh-throughput3DMicroscopieswithAdvancedComputationalTools,NationalInstituteofHealth(NIH),10/01/2002–09/30/2006,$45,000Thisproject,leadbySDSC,developedworkflowsoftwarenecessarytosupportcomplextomographicimagereconstructionondistributedresources.

• PI,TowardsCognitiveGrids:Knowledge-RichServicesforAutonomousWorkflowrefinementandRobustExecution,NationalScienceFoundation,12/15/2004–11/30/2006,$200,000Thisprojectexaminedtheuseofsemantictechnologiestodescriberesourcesandservicesonthegrid.

• Co-PI,WSW-06:2006WorkshoponChallengesofScientificWorkflows,NationalScienceFoundation,05/01/2006to10/31/2007,$44,000FundingfortheWorkshopontheChallengesofScientificWorkflows

PUBLICATIONS BOOKEDITOR 1. Workflowsfore-Science:ScientificWorkflowsforGrids,IanJ.Taylor,EwaDeelman,Dennis

B.Gannon,MatthewShields(Editors),Springer,January2007

JOURNALS 1. EwaDeelman,KaranVahi,MatsRynge,GideonJuve,RajivMayaniandRafaelFerreiradaSilva,PegasusintheCloud:ScienceAutomationthroughWorkflowTechnologies,IEEEInternetComputing,20:1,pp.70-76,2016.

2. IdafenSantana-Perez,RafaelFerreiradaSilva,MatsRynge,EwaDeelman,MariaS.Perez-HernandezandOscarCorcho,ReproducibilityofExecutionEnvironmentsinComputationalScienceUsingSemanticsandClouds,FutureGenerationComputerSystems,January2016.

3. PiotrBryk,MaciejMalawski,GideonJuveandEwaDeelman,Storage-awareAlgorithmsforSchedulingofWorkflowEnsemblesinClouds,JournalofGridComputing,p1-20,2015.

4. EwaDeelman,ChristopherCarothers,AnirbanMandal,BrianTierney,JeffreyS.Vetter,IlyaBaldin,ClarisCastillo,GideonJuve,DariuszKrol,VickieLynch,BenMayer,JeremyMeredith,ThomasProffen,PaulRuthandRafaelFerreiradaSilva,PANORAMA:AnApproachtoPerformanceModelingandDiagnosisofExtremeScaleWorkflows,InternationalJournalofHighPerformanceComputingApplications,July2015.

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5. RafaelFerreiradaSilva,GideonJuve,MatsRynge,EwaDeelmanandMironLivny,OnlineTaskResourceConsumptionPredictionforScientificWorkflows,ParallelProcessingLetters,25:3,2015.

6. WeiweiChen,RafaelFerreiradaSilva,EwaDeelmanandThomasFahringer,DynamicandFault-TolerantClusteringforScientificWorkflows,IEEETransactionsonCloudComputing,vol.PP,no.99,pp.1-1,2015.

7. D,Shungin,…EwaDeelman(author#69outof~300),Newgeneticlocilinkadiposeandinsulinbiologytobodyfatdistribution,Nature.2015Feb12;518(7538):197-206.doi:10.1038/nature14177.

8. MaciejMalawski,KamilFigiela,MarianBubak,EwaDeelmanandJarekNabrzyski,SchedulingMultilevelDeadline-ConstrainedScientificWorkflowsonCloudsBasedonCostOptimization,ScientificProgramming,10.1155/2015/680271,2015.

9. MaciejMalawski,GideonJuve,EwaDeelmanandJarekNabrzyski,AlgorithmsforCost-andDeadline-ConstrainedProvisioningforScientificWorkflowEnsemblesinIaaSClouds,FutureGeneratorComputerSystems,02/2015;48:1–18.DOI:10.1016/j.future.2015.01.004.

10. EwaDeelman,KaranVahi,GideonJuve,MatsRynge,ScottCallaghan,PhilipJMaechling,RajivMayani,WeiweiChen,RafaelFerreiradaSilva,MironLivnyandKentWenger,Pegasus:aWorkflowManagementSystemforScienceAutomation,FutureGenerationComputerSystems,2014.

11. WeiweiChen,RafaelFerreiradaSilva,EwaDeelmanandRizosSakellariou,UsingImbalanceMetricstoOptimizeTaskClusteringinScientificWorkflowExecutions,FutureGenerationComputerSystems,2014.

12. McLennan,Michael,StevenClark,EwaDeelman,MatsRynge,KaranVahi,FrankMcKenna,DerrickKearney,andCarolSong."HUBzeroandPegasus:integratingscientificworkflowsintosciencegateways."ConcurrencyandComputation:PracticeandExperience(2014).

13. SeyerleAA,YoungAM,JeffJM,MeltonPE,JorgensenNW,LinY,CartyCL,DeelmanE,HeckbertSR,HindorffLA,JacksonRD,MartinLW,OkinPM,PerezMV,PsatyBM,SolimanEZ,WhitselEA,NorthKE,LastonS,KooperbergC,AveryCL.Evidenceofheterogeneitybyrace/ethnicityingeneticdeterminantsofQTinterval.Epidemiology.2014Nov;25(6):790-8.

14. ParkSL,CabertoCP,LinY,GoodloeRJ,DumitrescuL,LoveSA,MatiseTC,HindorffLA,FowkeJH,SchumacherFR,Beebe-DimmerJ,ChenC,HouL,ThomasF,DeelmanE,HanY,PetersU,NorthKE,HeissG,CrawfordDC,HaimanCA,WilkensLR,BushWS,KooperbergC,ChengI,LeMarchandL.AssociationofCancerSusceptibilityVariantswithRiskofMultiplePrimaryCancers:ThePopulationArchitectureusingGenomicsandEpidemiologyStudy.CancerEpidemiolBiomarkersPrev.2014Nov;23(11):2568-78.

15. ParkSL,FesinmeyerMD,TimofeevaM,CabertoCP,KocarnikJM,HanY,LoveSA,YoungA,DumitrescuL,LinY,GoodloeR,WilkensLR,HindorffL,FowkeJH,CartyC,BuyskeS,SchumacherFR,ButlerA,DilksH,DeelmanE,CoteML,ChenW,PandeM,ChristianiDC,FieldJK,BickebllerH,RischA,HeinrichJ,BrennanP,WangY,EisenT,HoulstonRS,ThunM,AlbanesD,CaporasoN,PetersU,NorthKE,HeissG,CrawfordDC,BushWS,HaimanCA,LandiMT,HungRJ,KooperbergC,AmosCI,LeMarchandL,ChengI."PleiotropicAssociationsofriskVariantsidentifiedforOthercancersWithlungcancerrisk:thePAGeandtriclconsortia."JournaloftheNationalCancerInstitute106,no.4(2014):dju061.

16. KocarnikJM,PendergrassSA,CartyCL,PankowJS,SchumacherFR,ChengI,DurdaP,AmbiteJL,DeelmanE,CookNR,LiuS,Wactawski-WendeJ,HutterC,Brown-GentryK,WilsonS,BestLG,PankratzN,HongCP,ColeSA,VorugantiVS,BůžkovaP,JorgensenNW,JennyNS,WilkensLR,HaimanCA,KolonelLN,LacroixA,NorthK,JacksonR,LeMarchandL,HindorffLA,CrawfordDC,GrossM,PetersU."Multi-AncestralAnalysisofInflammation-RelatedGeneticVariantsandC-ReactiveProteininthePopulationArchitectureusingGenomicsandEpidemiology(PAGE)Study."Circulation:CardiovascularGenetics(2014):CIRCGENETICS-113.

17. LimU,KocarnikJM,BushWS,MatiseTC,CabertoC,ParkSL,CarlsonCS,DeelmanE,DugganD,FesinmeyerM,HaimanCA,HendersonBE,HindorffLA,KolonelLN,PetersU,StramDO,TiirikainenM,WilkensLR,WuC,KooperbergC,LeMarchandL.,Pleiotropyofcancersusceptibilityvariantsontheriskofnon-Hodgkinlymphoma:thePAGEconsortium.,PLoS

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One.2014Mar5;9(3):e89791.doi:10.1371/journal.pone.0089791.eCollection2014.18. Malawski,Maciej,KamilFigiela,MarianBubak,EwaDeelman,andJarekNabrzyski."Cost

OptimizationofExecutionofMulti-levelDeadline-ConstrainedScientificWorkflowsonClouds."InParallelProcessingandAppliedMathematics,pp.251-260.SpringerBerlinHeidelberg,2014.

19. GideonJuve,MatsRynge,EwaDeelman,Jens-S.Vockler,G.BruceBerriman.ComparingFutureGrid,AmazonEC2,andOpenScienceGridforScientificWorkflows.ComputinginScienceandEngineering,15:4,pp.20-29,2013.

20. EwaDeelman,GideonJuve,MaciejMalawski,JarekNabrzyski.HostedScience:ManagingComputationalWorkloadsintheCloud.ParallelProcessingLetters,23:2,June2013.

21. KaranVahi,IanHarvey,TaghridSamak,DanielGunter,KieranEvans,DavidRogers,IanTaylor,MonteGoode,FabioSilva,EddieAl-Shakarchi,GaurangMehta,EwaDeelman,AndrewJones.ACaseStudyintoUsingCommonReal-TimeWorkflowMonitoringInfrastructureforScientificWorkflows.JournalofGridComputing:Volume11,Issue3(2013),Page381-406.

22. ZhangL,BuzkovaP,WasselCL,RomanMJ,NorthKE,CrawfordDC,Boston J,Brown-GentryKD,ColeSA,DeelmanE,GoodloeR,WilsonS,HeissG, JennyNS,JorgensenNW,MatiseTC,McClellanBEJr,NatoAQJr,RitchieMD,FranceschiniN,KaoWH.,Lackofassociationsoftencandidatecoronaryheartdiseaseriskgeneticvariantsandsubclinicalatherosclerosis infourU.S. populations: The Population Architecture using Genomics and Epidemiology (PAGE)study. Atherosclerosis. 2013 Jun;228(2):390-9. doi: 10.1016/j.atherosclerosis.2013.02.038.Epub2013Mar13.

23. SA Pendergrass, Brown-Gentry K, Dudek S, Frase A, Torstenson ES, Goodloe R, Ambite JL,AveryCL,BuyskeS,BůžkováP,DeelmanE,FesinmeyerMD,HaimanCA,HeissG,HindorffLA,HsuCN,JacksonRD,KooperbergC,LeMarchandL,LinY,MatiseTC,MonroeKR,MorelandL,Park SL, Reiner A, Wallace R, Wilkens LR, Crawford DC, Ritchie MD. Phenome-WideAssociation Study (PheWAS) for Detection of Pleiotropywithin the Population Architectureusing Genomics and Epidemiology (PAGE) Network. PLoS Genet. 2013 Jan;9(1):e1003087.doi:10.1371/journal.pgen.1003087.Epub2013Jan31.PubMedPMID:23382687.

24. GideonJuve,AnnL.Chervenak,EwaDeelman,ShishirBharathi,GaurangMehta,KaranVahi:Characterizingandprofiling scientificworkflows. FutureGenerationComp. Syst. 29(3): 682-692,2013

25. GBruceBerriman,EwaDeelman,GideonJuve,MatsRynge,JensVöckler,Theapplicationofcloudcomputingtoscientificworkflows:astudyofcostandperformance.PhilosTransactAMath Phys Eng Sci. 2012 Dec 10;371(1983):20120066. doi: 10.1098/rsta.2012.0066. Print2013Jan28.

26. Gideon Juve, Ewa Deelman, Bruce Berriman, Benjamin P. Berman, Phil Maechling, AnEvaluationof theCost andPerformanceof ScientificWorkflowsonAmazonEC2, JournalofGridComputing,vol.10,no.1,pp.5-21,2012.

27. SetiawanVW,HaesslerJ,SchumacherF,CoteML,DeelmanE,FesinmeyerMD,HendersonBE,Jackson RD, Vöckler JS, Wilkens LR, Yasmeen S, Haiman CA, Peters U, Le Marchand L,KooperbergC.,.HNF1Bandendometrialcancerrisk:resultsfromthePAGEstudy.PLoSOne.2012;7(1):e30390.doi:10.1371/journal.pone.0030390.Epub2012Jan27

28. Gurmeet Singh, Ewa Deelman, The interplay of resource provisioning and workflowoptimization in scientific applications, Computation: Practice and Experience, Special Issue:SpecialIssueFourthInternationalWorkshopOnWorkflowManagement(ICWM2009),23(16),pages1969–1989,November2011

29. FranceschiniN,CartyC,BuzkovaP,ReinerAP,GarrettT,LinY,VoecklerJS,HindorffLA,ColeSA,BoerwinkleE,LinDY,BookmanE,BestLG,BellaJN,EatonC,GreenlandP,JennyN,NorthKE,TavernaD,YoungAM,DeelmanE,KooperbergC,PsatyB,HeissG.Associationofgeneticvariants and incident coronary heart disease in multiethnic cohorts: the PAGE study. CircCardiovascGenet.2011Dec;4(6):661-72.Epub2011Oct31.PubMedPMID:22042884.

30. SetiawanVW,HaesslerJ,SchumacherF,CoteML,DeelmanE,FesinmeyerMD,HendersonBE,Jackson RD, Voeckler JS, Wilkens LR, Yasmeen S, Haiman CA, Peters U, Le Marchand L,KooperbergC.HNF1BandEndometrialCancerRisk:ResultsfromthePAGEstudy.PLoSOne.

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2012;7(1):e30390.Epub2012Jan27.PubMedPMID:22299039;31. FarisJ,KolkerE,SzalayA,BradlowL,DeelmanE,FengW,QiuJ,RussellD,StewartE,KolkerE.

Communicationanddata-intensivescienceinthebeginningofthe21stcentury.OMICS.2011Apr;15(4):213-5.PubMedPMID:21476843.

32. YingWang, GaurangMehta, Rajiv Mayani, Jingxi Lu, Tade Souaiaia, Yangho Chen, AndrewClark,Hee JaeYoon, LinWan,OlegV. Evgrafov, JamesA. Knowles, EwaDeelman, andTingChen,RseqFlow:Workflows forRNA-Seqdataanalysis,Bioinformatics (2011) firstpublishedonlineJuly27,2011doi:10.1093/bioinformatics/btr441

33. YolandaGil, Varun Ratnakar, Jihie Kim, PedroGonzalez-Calero, PaulGroth, JoshuaMoody,andEwaDeelman,Wings:IntelligentWorkflow-BasedDesignofComputationalExperiments.IEEEIntelligentSystems,26(1),2011.

34. Eun-KyuByun,Yang-SukKee, Jin-SooKim,EwaDeelman, SeungryoulMaeng:BTS:Resourcecapacity estimate for time-targeted science workflows. J. Parallel Distrib. Comput. (JPDC)71(6):848-862(2011)

35. SacconeSF,QuanJ,MehtaG,BolzeR,ThomasP,DeelmanE,TischfieldJA,RiceJP,NewtoolsandmethodsfordirectprogrammaticaccesstothedbSNPrelationaldatabase.NucleicAcidsRes.2010Oct30.

36. SacconeSF,BolzeR,ThomasP,QuanJ,MehtaG,DeelmanE,TischfieldJA,RiceJP. SPOT:aweb-based tool for using biological databases to prioritize SNPs after a genome-wideassociationstudy.NucleicAcidsRes.June2010

37. Y. Gil; Ratnakar, V; Kim, J; Gonzalez-Calero, P; Groth, P; Moody, J; Deelman, E; WINGS:IntelligentWorkflow-BasedDesign of Computational Experiments, Intelligent Systems, IEEE,2010

38. Gideon Juve, Ewa Deelman, Karan Vahi, Gaurang Mehta, Experiences with ResourceProvisioning for ScientificWorkflows Using Corral, Scientific Programming, 18:2, pp. 77-92,April2010.

39. Robert Graves, Thomas Jordan, Scott Callaghan, Ewa Deelman, Edward Field, Gideon Juve,CarlKesselman,PhilipMaechling,GaurangMehta,KevinMilner,DavidOkaya,PatrickSmall,KaranVahi,CyberShake:APhysics-BasedSeismicHazardModelforSouthernCalifornia,PureandAppliedGeophysics,May2010.

40. VijayS.Kumar,TahsinKurc,VarunRatnakar, JihieKim,GaurangMehta,KaranVahi, YoonjuLeeNelson,P.Sadayappan,EwaDeelman,YolandaGil,MaryHallandJoelSaltzParameterizedspecification, configuration and execution of data-intensive scientific workflows, ClusterComputing,Volume13,Number3/September,2010

41. GideonJuve,EwaDeelman,ScientificWorkflowsandClouds,ACMCrossroads,16:3,pp.14-18,Spring2010

42. Ewa Deelman, Grids and Clouds: Making Workflow Applications Work in HeterogeneousDistributedEnvironments InternationalJournalofHighPerformanceComputingApplicationsOnlineFirst,publishedonDecember4,2009asdoi:10.1177/1094342009356432

43. Scott Callaghan, Ewa Deelman, Dan Gunter, Gideon Juve, Philip Maechling, Christopher Brooks, Karan Vahi, Kevin Milner, Robert Graves, Edward Field, David Okaya, Thomas Jordan, Scaling up workflow-based applications, Journal of Computer and System Sciences, In Press, Corrected Proof, Available online 22 November 2009, ISSN 0022-0000, DOI: 10.1016/j.jcss.2009.11.005.

44. Kevin Lee, Norman W. Paton, Rizos Sakellariou, Ewa Deelman, Alvaro A. A. Fernandes,Gaurang Mehta, Adaptive Workflow Processing and Execution in Pegasus, ConcurrencyPracticeandExperience,volume21,issue16,2009,pages1965-1981.

45. Gurmeet Singh, Carl Kesselman, and Ewa Deelman, An End-to-End Framework forProvisioning-Based Resource and Application Management, IEEE Systems Journal, (3) 1,March2009

46. Ewa Deelman, Dennis Gannon, Mathew Shields, Ian Taylor, Workflows and e-Science: Anoverview of workflow system features and capabilities, Future Generations of ComputerSystems,July2008.

47. Simon Miles, Paul Groth, Ewa Deelman, Karan Vahi, Gaurang Mehta, and Luc Moreau.

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Provenance: The bridge between experiments and data. Computing in Science andEngineering,2008.

48. YolandaGil,EwaDeelman,MarkEllisman,ThomasFahringer,GeoffreyFox,DennisGannon,Carole Goble, Miron Livny, LucMoreau, JimMyers, Examining the Challenges of ScientificWorkflows,IEEEComputer,IEEEComputer,vol.40,pp.24-32,2007.

49. GurmeetSingh,KaranVahi,ArunRamakrishnan,GaurangMehta,EwaDeelman,HenanZhao,RizosSakellariou,KentBlackburn,DuncanBrown,StephenFairhurst,DavidMeyers,G.BruceBerriman,JohnGood,DanielS.Katz,OptimizingWorkflowDataFootprint,SpecialissueoftheScientific Programming Journal dedicated to Dynamic ComputationalWorkflows: Discovery,OptimisationandScheduling,2007

50. JihieKim,EwaDeelman,YolandaGil,GaurangMehta,VarunRatnakar.ProvenanceTrails inthe Wings/Pegasus Workflow System, Concurrency and Computation: Practice andExperience,SpecialIssueontheFirstProvenanceChallenge,2007.

51. Joseph C. Jacob, Daniel S. Katz, G. Bruce Berriman, John Good, Anastasia C. Laity, EwaDeelman, Carl Kesselman, Gurmeet Singh, Mei-Hui Su, Thomas A. Prince, Roy Williams,Montage:agridportalandsoftwaretoolkitforscience-gradeastronomicalimagemosaicking,IJCSE,2006

52. EwaDeelman,TevfikKosar,CarlKesselmanandMironLivny,WhatMakesWorkflowsWorkinan Opportunistic Environment? Concurrency and Computation: Practice and Experience,Volume18,Issue10,Pages1187–1199.2005

53. Gurmeet Singh, Carl Kesselman, EwaDeelman, Optimizing Grid-BasedWorkflow Execution,JournalofGridComputing,Vol.3,No.3-4.(September2005),pp.201-219.

54. Ewa Deelman, Gurmeet Singh, Mei-Hui Su, James Blythe, Yolanda Gil, Carl Kesselman,GaurangMehta,KaranVahi,G.BruceBerriman,JohnGood,AnastasiaLaity,JosephC.Jacob,Daniel S. Katz, Pegasus: a Framework for Mapping Complex Scientific Workflows ontoDistributedSystems,ScientificProgrammingJournal,Volume13,Number3,2005

55. P. Maechling, H. Chalupsky, M. Dougherty, E. Deelman, Y. Gil, S. Gullapalli, V. Gupta, C.Kesselman, J.Kim,G.Mehta,B.Mendenhall, T.Russ,G. Singh,M.Spraragen,G. Staples,K.Vahi, SimplifyingConstructionofComplexWorkflows forNon-ExpertUsersof theSouthernCaliforniaEarthquakeCenterCommunityModelingEnvironment,SIGMODRecord,Volume34Number3,September2005

56. Jim Blythe, Ewa Deelman, and Yolanda Gil, Automatically Composed Workflows for GridEnvironmentsDescribedwithVaryingLevelsofDetail, IEEE IntelligentSystems,19(4):16-23(2004)

57. Y.Gil,E.Deelman,J.Blythe,C.Kesselman,H.Tangmunarunkit.Artificialintelligenceandgrids:workflow planning and beyond, IEEE Intelligent Systems, Volume: 19 , Issue: 1 , Jan.-Feb.2004,Pages:26–33

58. A.Chervenak,E.Deelman,C.Kesselman,B.Allcock, I.Foster,V.Nefedova,J.Lee,A.Sim,A.Shoshani,B.Drach,D.Williams,D.Middleton ,High-performance remoteaccess to climatesimulationdata:achallengeproblemfordatagridtechnologies,ParallelComputingVolume29,Issue10(October2003),Pages:1335-1356,2003.

59. E.Deelman, J. Blythe, Y.Gil, C. Kesselman,G.Mehta, K. Vahi, K. Blackburn, A. Lazzarini, A.Arbee, R. Cavanaugh, S. Koranda, Mapping Complex Workflows Onto Grid Environments,JournalofGridComputing,Vol.1,No.1,2003.,pp25-39.

60. R.Williams,B.Berriman,E.Deelman,J.Good,J.Jacob,C.Kesselman,C.Lonsdale,S.Oliver,T.Prince.Multi-WavelengthImageSpace:AnotherGrid-EnabledScience,JournalofConcurrencyandComputation:PracticeandExperience,Wiley,March2003

61. V.S. Adve, R. Bagrodia, E. Deelman, Rizos Sakellariou. Compiler-Optimized Simulation ofLarge-Scale Applications on High Performance Architectures. Journal of Parallel andDistributedComputing,Vol.62,No.3,Mar2002,pp.393-426.

62. E. Deelman, B. K. Szymanski. Simulating Spatially Explicit Problems on High PerformanceArchitectures, JournalofParallelandDistributedComputing,Vol.62,No.3,Mar2002,pp.446-467.

63. R.Bagrodia,E.Deelman,andT.Phan.ParallelSimulationofLargeScaleParallelApplications,

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International Journal of High-Performance Computing Applications. Volume 15, Number, 1,Spring2001.

64. V.S.Adve,R.Bagrodia,J.C.Browne,E.Deelman,A.Dube,E.Houstis,J.Rice,R.Sakellariou,D.Sundaram-Stukel,P.J.Teller,andM.K.Vernon.POEMS:End-to-endPerformanceDesignofLargeParallel AdaptiveComputational Systems, IEEE Transactions on Software Engineering,vol.26,no.11p.1027-48,November2000.

65. S. Prakash, E. Deelman, and R. Bagrodia. Asynchronous Parallel Simulation of ParallelPrograms.IEEETransactionsonSoftwareEngineering,26(5),May2000.

66. T.Caraco,G.Gardner,W.Maniatty,E.Deelman,andB.K.Szymanski,Lymedisease:self-regulationandpathogen invasion. JournalofTheoreticalBiology,1998Aug21,193(4):561-75.

CONFERENCEPAPERS

1. AnirbanMandal,PaulRuth,IlyaBaldin,YufengXin,ClarisCastillo,GideonJuve,MatsRynge,EwaDeelmanandJeffChase,AdaptingScientificWorkflowsonNetworkedCloudsUsingProactiveIntrospection,IEEE/ACMUtilityandCloudComputing(UCC),2015

2. GideonJuve,BenjaminTovar,RafaelFerreiradaSilva,DariuszKrol,DouglasThain,EwaDeelman,WilliamAllcockandMironLivny,PracticalResourceMonitoringforRobustHighThroughputComputing,WorkshoponMonitoringandAnalysisforHighPerformanceComputingSystemsPlusApplications,2015.

3. RafaelFerreiradaSilva,MatsRynge,GideonJuve,IgorSfiligoi,EwaDeelman,JamesLetts,FrankWurthweinandMironLivny,CharacterizingaHighThroughputComputingWorkload:TheCompactMuonSolenoid(CMS)ExperimentatLHC,2015InternationalConferenceonComputationalScience,2015.

4. SudarshanSrinivasan,GideonJuve,RafaelFerreiradaSilva,KaranVahiandEwaDeelman,ACleanupAlgorithmforImplementingStorageConstraintsinScientificWorkflowExecutions,9thWorkshoponWorkflowsinSupportofLarge-ScaleScience(WORKS),2014.

5. IliaPietri,GideonJuve,EwaDeelmanandRizosSakellariou,APerformanceModeltoEstimateExecutionTimeofScientificWorkflowsontheCloud,9thWorkshoponWorkflowsinSupportofLarge-ScaleScience(WORKS),2014.

6. RafaelFerreiradaSilva,WeiweiChen,GideonJuve,KaranVahi,EwaDeelman.CommunityResourcesforEnablingResearchinDistributedScientificWorkflows.10thIEEEInternationalConferenceone-Science(eScience2014),Guarujá,Brazil,2014

7. IdafenSantana-Perez,RafaelFerreiradaSilva,MatsRynge,EwaDeelman,MariaS.Perez-Hernandez,andOscarCorcho.ASemantic-BasedApproachtoAttainReproducibilityofComputationalEnvironmentsinScientificWorkflows:ACaseStudy.1stInternationalWorkshoponReproducibilityinParallelComputing(REPPAR),inconjunctionwithEuro-Par2014,Porto,Portugal,2014

8. TristanGlatard,LindsayBLewis,RafaelFerreiradaSilva,Marc-EtienneRousseau,ClaudeLepage,PierreRioux,NajmehMahani,EwaDeelman,AlanCEvans.ExtendingprovenanceinformationinCBRAINtoaddressreproducibilityissuesacrosscomputingplatforms.NeuroInformatics2014,Leiden,TheNetherlands,2014.

9. IdafenSantana-Perez,RafaelFerreiradaSilva,MatsRynge,EwaDeelman,MariaS.Perez-Hernandez,andOscarCorcho.LeveragingSemanticstoImproveReproducibilityinScientificWorkflows.ThereproducibilityatXSEDEworkshop,Atlanta,USA,2014

10. WeiweiChen,RafaelFerreiradaSilva,EwaDeelman,andRizosSakellariou.BalancedTaskClusteringinScientificWorkflows.9thIEEEInternationalConferenceone-Science(eScience2013),Beijing,China,Oct24,2013

11. MatsRynge,GideonJuve,JamieKinney,JohnGood,BruceBerriman,AnnMerrihew,andEwaDeelman.ProducinganInfraredMultiwavelengthGalacticPlaneAtlasusingMontage,PegasusandAmazonWebServices.23rdAnnualAstronomicalDataAnalysisSoftwareandSystems(ADASS)Conference,September2013

12. IliaPietri,MaciejMalawski,GideonJuve,EwaDeelman,JarekNabrzyski,RizosSakellariou.Energy-ConstrainedProvisioningforScientificWorkflowEnsembles.IEEEInternationalConferenceonCloudandGreenComputing(CGC’13),September2013.

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13. AnirbanMandal,PaulRuth,IlyaBaldin,YufengXin,ClarisCastillo,MatsRynge,EwaDeelman.EvaluatingI/OAwareNetworkManagementforScientificWorkflowsonNetworkedClouds.The3rdInternationalWorkshoponNetwork-awareDataManagement,inconjunctionwithSC'13,Denver,CO.,November2013

14. RafaelFerreiraDaSilva,GideonJuve,EwaDeelman,TristanGlatard,FredericDesprez,DouglasThain,BenjamínTovarandMironLivny.TowardFine-GrainedOnlineTaskCharacteristicsEstimationinScientificWorkflows.8thWorkshopOnWorkflowsinSupportofLarge-ScaleScience,November2013.

15. SepidehAzarnoosh,MatsRynge,GideonJuve,EwaDeelmanMichalNieć,MaciejMalawski,RafaelFerreiradaSilva.IntroducingPRECIP:AnAPIforManagingRepeatableExperimentsintheCloud.WorkshoponCloudComputingforResearchCollaborations(CRC),2013.

16. KaranVahi,MatsRynge,GideonJuve,RajivMayani,andEwaDeelman.RethinkingDataManagementforBigDataScientificWorkflows.WorkshoponBigDataandScience:InfrastructureandServices,September2013

17. MichaelMcLennan,SteveClark,FrankMcKenna,EwaDeelman,MatsRynge,KaranVahi,DerrickKearney,CarolSong:BringingScientificWorkflowtotheMassesviaPegasusandHUBzero.Proceedingsofthe5thInternationalWorkshoponScienceGateways,Zurich,Switzerland, 3-5 June, 2013.

18. G.BruceBerriman,CarolynBrinkworth,DawnGelino,DennisK.Wittman,EwaDeelman,GideonJuve,MatsRynge,JamieKinney,ATaleOf160Scientists,ThreeApplications,AWorkshopandACloud,AstronomicalDataAnalysisSoftwareandSystemsXXII,2012.

19. AnnL.Chervenak,DavidE.Smith,WeiweiChen,EwaDeelman,IntegratingPolicywithScientificWorkflowManagementforData-IntensiveApplications,The7thWorkshoponWorkflowsinSupportofLarge-ScaleScience(WORKS'12),SaltLakeCity,November10-16,2012

20. RohitAgarwal,GideonJuve,EwaDeelman,Peer-to-PeerDataSharingforScientificWorkflowsonAmazonEC2,7thWorkshoponWorkflowsinSupportofLarge-ScaleScience(WORKS'12),2012.

21. WeiweiChen,EwaDeelman,WorkflowSim:AToolkitforSimulatingScientificWorkflowsinDistributedEnvironments,The8thIEEEInternationalConferenceoneScience2012,Chicago,Oct8-12,2012.

22. TaghridSamak,DanGunter,MonteGoode,EwaDeelman,GideonJuve,FabioSilva,FailureAnalysisofDistributedScientificWorkflowsExecutingintheCloud,8thInternationalConferenceonNetworkandServiceManagement(CNSM2012),2012.

23. MaciejMalawski,GideonJuve,EwaDeelman,JarekNabrzyski,Cost-andDeadline-ConstrainedProvisioningforScientificWorkflowEnsemblesinIaaSClouds,24thIEEE/ACMInternationalConferenceonSupercomputing(SC12),2012.

24. EwaDeelman,GideonJuve,G.BruceBerriman,UsingCloudsforScience,IsitJustKickingtheCanDownTheRoad?,2ndInternationalConferenceonCloudComputingandServicesScience(CLOSER2012),2012.

25. MatsRynge,GideonJuve,KaranVahi,ScottCallaghan,GaurangMehta,PhilipJ.Maechling,EwaDeelman,EnablingLarge-scaleScientificWorkflowsonPetascaleResourcesUsingMPIMaster/Worker,XSEDE'12,July2012.

26. WeiweiChen,EwaDeelman,FaultTolerantClusteringinScientificWorkflows,IEEE6thInternationalWorkshoponScientificWorkflows(SWF2012)inconjunctionwithIEEE8thWorldCongressonServices(SERVICES2012),Honolulu,Hawaii,June24,2012

27. ACloud-basedDynamicWorkflowforMassSpectrometryDataAnalysis,AshishNagavaram,GaganAgrawal,MichaelFreitas,GaurangMehta,RajivMayani,EwaDeelman,Proceedingsofthe7thIEEEInternationalConferenceone-Science(e-Science2011),December2011.

28. WeiweiChen,EwaDeelman,WorkflowOverheadAnalysisandOptimizations,6thWorkshoponWorkflowsinSupportofLarge-ScaleScience(WORKS11),Seattle,Washington,November14th,2011.

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29. TaghridSamak,DanGunter,MonteGoode,EwaDeelman,GaurangMehta,FabioSilva,KaranVahi,FailurePredictionandLocalizationinLargeScientificWorkflows,6thWorkshoponWorkflowsinSupportofLarge-ScaleScience(WORKS11),Seattle,Washington,November14th,2011.

30. MatsRynge,GideonJuve,GaurangMehta,EwaDeelman,KristaLarson,BurtHolzman,IgorSfiligoi,FrankWürthwein,G.BruceBerriman,ScottCallaghan,ExperiencesUsingGlideinWMSandtheCorralFrontendAcrossCyberinfrastructures,Proceedingsofthe7thIEEEInternationalConferenceone-Science(e-Science2011),December2011.

31. GideonJuve,EwaDeelmanAutomatingApplicationDeploymentinInfrastructureClouds,3rdIEEEInternationalConferenceonCloudComputingTechnologyandScience(CloudCom)2011.

32. DanGunter,ChristopherH.Brooks,EwaDeelman,MonteGood,GideonJuve,GaurangMehta,PriscillaMoaes,TaghridSamak,FabioSilva,MartinSwany,KaranVahi,OnlineWorkflowManagementandPerformanceAnalysiswithSTAMPEDE,Proceedingsofthe7thInternationalConferenceonNetworkandServiceManagement(CNSM2011),2011.

33. TaghridSamak,DanGunter,EwaDeelman,GideonJuve,GaurangMehta,FabioSilva,KaranVahi,OnlineFaultandAnomalyDetectionforLarge-ScaleScientificWorkflows,13thIEEEInternationalConferenceonHighPerformanceComputingandCommunications(HPCC2011),2011.

34. BTS:Resourcecapacityestimatefortime-targetedscienceworkflows,JournalofParallelandDistributedComputing,Eun-KyuByun,Yang-SukKee,Jin-SooKim,EwaDeelman,SeungryoulMaeng,Volume71,Issue6,SpecialIssueonCloudComputing,June2011,Pages848-862,ISSN0743-7315,DOI:10.1016/j.jpdc.2011.01.008.

35. TenyearsofsoftwaresustainabilityattheInfraredProcessingandAnalysisCenter,G.BruceBerriman,JohnGood,EwaDeelmanandAnastasiaAlexov,Phil.Trans.R.Soc.A2011369,3384-3397,doi:10.1098/rsta.2011.0136

36. Wrangler:VirtualClusterProvisioningfortheCloud,GideonJuveandEwaDeelman,shortpaper,Proceedingsofthe20thInternationalSymposiumonHighPerformanceDistributedComputing(HPDC'11),2011.

37. ExperiencesUsingCloudComputingforAScientificWorkflowApplication,Jens-S.Vöckler,GideonJuve,EwaDeelman,MatsRynge,G.BruceBerriman,Proceedingsof2ndWorkshoponScientificCloudComputing(ScienceCloud2011),2011.

38. G.BruceBerriman,GideonJuve,EwaDeelman,MoiraRegelson,PeterPlavchan,TheApplicationofCloudComputingtoAstronomy:AStudyofCostandPerformance,Workshopone-SciencechallengesinAstronomyandAstrophysicsinconjunctionwiththe6thIEEEInternationalConferenceone-Science(e-Science2010),December2010.

39. MirkoSonntagDimkaKarastoyanovaandEwaDeelman,BridgingTheGapBetweenBusinessAndScientificWorkflows,e-Science2010,Brisbane,Australia

40. MirkoSonntagDimkaKarastoyanovaandEwaDeelman,BPEL4Pegasus:CombiningBusinessandScientificWorkflows,InternationalConferenceonService-OrientedComputing(ICSOC),SanFrancisco,California,December2010.

41. RizosSakellariou,HenanZhao,EwaDeelman.MappingWorkflowsonGridResources:ExperimentswiththeMontageWorkflow.InGrids,P2PandServicesComputing,Springer,2010,pp.119-132.

42. G.BruceBerriman,EwaDeelman,PaulGroth,andGideonJuve,TheApplicationofCloudComputingtotheCreationofImageMosaicsandManagementofTheirProvenanceSPIEConference7740:SoftwareandCyberinfrastructureforAstronomy,2010.

43. GideonJuve,EwaDeelman,KaranVahi,GaurangMehta,BruceBerriman,BenjaminP.Berman,PhilMaechling,DataSharingOptionsforScientificWorkflowsonAmazonEC2,22ndIEEE/ACMConferenceonSupercomputing(SC10),NewOrleans,Louisiana,November2010.

44. PaulGroth,EwaDeelman,GideonJuve,GaurangMehtaandBruceBerriman,“APipeline-CentricProvenanceModel”,WORKS2009

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45. GideonJuve,EwaDeelman,KaranVahi,GaurangMehta,BruceBerriman,BenjaminP.Berman,PhilipMaechlingScientificWorkflowApplicationsonAmazonEC2,Cloud-basedServicesandApplicationsWorkshopinConjunctionwithe-Science2009

46. PhilipMaechling,EwaDeelman,YifengCui:ImplementingSoftwareAcceptanceTestsasScientificWorkflows.PDPTA2009:317-323

47. VijayS.Kumar,P.Sadayappan,GaurangMehta,KaranVahi,EwaDeelman,VarunRatnakar,JihieKim,YolandaGil,MaryW.Hall,TahsinM.Kurç,JoelH.Saltz:Anintegratedframeworkforperformance-basedoptimizationofscientificworkflows.HPDC2009:177-186

48. RizosSakellariouandHenanZhaoandEwaDeelman,MappingWorkflowsonGridResources:ExperimentswiththeMontageWorkflow,CoreGrid2009

49. R.Grave,S.Callaghan,E.Deelman,E.Field,N.Gupta,T.H.Jordan,G.Juve,C.Kesselman,P.Maechling,G.Mehta,D.Meyers,D.Okaya,K.Vahi,PhysicsBasedProbabilisticSeismicHazardCalculationsforSouthernCalifornia.,14thWorldConferenceonEarthquakeEngineering:InnovationPracticeSafety.2008

50. ScottCallaghan,PhilipMaechling,EwaDeelman,KaranVahi,GaurangMehta,GideonJuve,KevinMilner,RobertGraves,EdwardField,DavidOkaya,DanGunter,KeithBeattie,ThomasJordan,“ReducingTime-to-SolutionUsingDistributedHigh-ThroughputMega-Workflows-ExperiencesfromSCECCyberShake”,FourthIEEEInternationalConferenceone-Science(e-Science2008),10-12December2008inIndianapolis,Indiana,USA,

51. GideonJuve,EwaDeelman,“ResourceProvisioningOptionsforLarge-ScaleScientificWorkflows”,ThirdInternationalWorkshoponScientificWorkflowsandBusinessWorkflowStandardsine-Science(SWBES)inconjunctionwithFourthIEEEInternationalConferenceone-Science(e-Science2008),10December2008inIndianapolis,Indiana,USA

52. ChristinaHoffa,GaurangMehta,TimothyFreeman,EwaDeelman,KateKeahey,BruceBerriman,JohnGood,“OntheUseofCloudComputingforScientificWorkflows”,3rdInternationalWorkshoponScientificWorkflowsandBusinessWorkflowStandardsine-Science(SWBES)inconjunctionwithFourthIEEEInternationalConferenceone-Science(e-Science2008),10December2008inIndianapolis,Indiana,USA

53. EwaDeelman,GurmeetSingh,MironLivny,BruceBerriman,JohnGood.“TheCostofDoingScienceontheCloud:TheMontageExample”ProceedingofSuperComputing2008,Austin,Texas,November2008

54. ShishirBharathi,AnnChervenak,EwaDeelman,GaurangMehta,Mei-HuiSu,KaranVahi,“CharacterizationofScientificWorkflows”,3rdWorkshoponWorkflowsinSupportofLarge-ScaleScience(WORKS08),Austin,TX,November,2008

55. Yang-SukKee,EwaDeelman,KaranVahi,Eun-kyuByun,Jin-SooKim,“PegasusonVirtualGrid:ACaseStudyofWorkflowPlanningoverCaptiveResources”,3rdWorkshoponWorkflowsinSupportofLarge-ScaleScience(WORKS08),Austin,TX,November2008

56. EwaDeelman,AnnChervenak“DataManagementChallengesofLarge-Scale,Data-IntensiveScientificworkflows”inWSES08:3rdInternationalWorkshoponWorkflowSystemsine-Science,inconjunctionwithCCGrid2008,May2008,Lyon,France

57. K.Lee,N.W.Paton,R.Sakellariou,E.Deelman,A.A.A.Fernandes,G.Mehta“AdaptiveWorkflowProcessingandExecutioninPegasus”,3rdInternationalWorkshoponWorkflowManagementandApplicationsinGridEnvironments(WaGe08),inProceedingsoftheThirdInternationalConferenceonGridandPervasiveComputingSymposia/Workshops,Pages99-106,May25-282008,Kunming,China

58. VijayKumar,MaryHall,JihieKim,YolandaGil,TahsinKurc,EwaDeelmanandJoelSaltz,“DesigningandParameterizingaWorkflowforOptimization:ACaseStudyinBiomedicalImaging”,InProc.oftheWorkshoponNextGenerationSoftware,heldinconjuctionwithIPDPS'08,April,2008

59. GurmeetSingh,Mei-HuiSu,KaranVahi,EwaDeelman,BruceBerriman,JohnGood,DanielS.Katz,andGaurangMehta,"WorkflowTaskClusteringforBestEffortSystemswithPegasus",MardiGrasConference,BatonRouge,LA,January2008

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60. SimonMiles,EwaDeelman,PaulGroth,KaranVahi,GaurangMehta,LucMoreau.ConnectingScientificDatatoScientificExperimentswithProvenance,ThirdIEEEInternationalConferenceone-ScienceandGridComputing(e-Science2007)Bangalore,India.,2007

61. AnnChervenak,EwaDeelman,MironLivny,Mei-HuiSu,RobSchuler,ShishirBharathi,GaurangMehta,KaranVahi,DataPlacementforScientificApplicationsinDistributedEnvironments,ProceedingsofGridConference2007,Austin,Texas,September2007.

62. GurmeetSingh,CarlKesselman,EwaDeelman,AdaptivePricingforResourceReservations,8thIEEE/ACMInternationalConferenceonGridComputing(Grid2007),Austin,Texas,September2007.

63. YolandaGil,VarunRatnakar,EwaDeelman,GaurangMehta,andJihieKim.WingsforPegasus:CreatingLarge-ScaleScientificApplicationsUsingSemanticRepresentationsofComputationalWorkflows,Proceedingsofthe19thAnnualConferenceonInnovativeApplicationsofArtificialIntelligence(IAAI),Vancouver,BritishColumbia,Canada,July22-26,2007.

64. NanditaMandal,EwaDeelman,GaurangMehta,Mei-HuiSu,andKaranVahi,IntegratingExistingScientificWorkflowSystems:TheKepler/PegasusExample,ProceedingsoftheSecondWorkshoponWorkflowsinSupportofLarge-ScaleScience(WORKS'07),inconjunctionwiththeIEEEInternationalSymposiumonHighPerformanceDistributedComputingMonterrey,CA,June2007.

65. YolandaGil,PedroA.Gonzalez-Calero,EwaDeelman.OntheBlackArtofDesigningComputationalWorkflows,ProceedingsoftheSecondWorkshoponWorkflowsinSupportofLarge-ScaleScience(WORKS'07),inconjunctionwiththeIEEEInternationalSymposiumonHighPerformanceDistributedComputingMonterrey,CA,June2007.

66. GurmeetSingh,CarlKesselman,EwaDeelman,AdaptivePricingforResourceReservationsThe8thIEEE/ACMInternationalConferenceonGridComputing(Grid2007)

67. GurmeetSingh,CarlKesselman,EwaDeelman,AProvisioningModelanditsComparisonwithBest-EffortforPerformance-CostOptimizationinGrids,inIEEEInternationalSymposiumonHighPerformanceDistributedComputing(HPDC)2007

68. ArunRamakrishnan,GurmeetSingh,HenanZhao,EwaDeelman,RizosSakellariou,K.Vahi,K.Blackburn,D.Meyers,andM.Samidi,SchedulingData-IntensiveWorkflowsontoStorage-ConstrainedDistributedResources,inSeventhIEEEInternationalSymposiumonClusterComputingandtheGrid—CCGrid2007

69. EwaDeelmanandYolandaGil,ManagingLarge-ScaleScientificWorkflowsinDistributedEnvironments:ExperiencesandChallenges,ProceedingsofWorkflowsine-Science,Amsterdam,TheNetherlands,2006.

70. E.Deelman,S.Callaghan,E.Field,H.Francoeur,R.Graves,N.Gupta,V.Gupta,T.H.Jordan,C.Kesselman,P.Maechling,J.Mehringer,G.Mehta,D.Okaya,K.Vahi,andL.Zhao,ManagingLarge-ScaleWorkflowExecutionfromResourceProvisioningtoProvenancetracking:TheCyberShakeExample,Proceedingsofe-Science,Amsterdam,TheNetherlands,2006.(bestpaper)

71. G.Singh,C.Kesselman,andE.Deelman,Application-levelResourceProvisioningontheGrid,Proceedingsofe-Science,Amsterdam,TheNetherlands,2006.

72. V.Nefedova,R.Jacob,I.Foster,Z.Liu,Y.Liu,E.Deelman,G.Mehta,M.-H.Su,andK.Vahi,AutomatingClimateScience:LargeEnsembleSimulationsontheTeraGridwiththeGriPhyNVirtualDataSystem,Proceedingsofe-Science,Amsterdam,TheNetherlands,2006.

73. A.Lathers,M.-H.Su,A.Kulungowski,A.W.Lin,G.Mehta,S.T.Peltier,EwaDeelman,andM.H.Ellisman,EnablingParallelScientificApplicationswithWorkflowTools,ProceedingsofChallengesofLargeApplicationsinDistributedEnvironments(CLADE),Paris,2006.

74. Y.Gil,V.Ratnakar,andE.Deelman,MetadataCatalogswithSemanticRepresentation,ProceedingsofInternationalProvenanceAnnotationWorkshop(IPAW-06),Chicago,IL,2006.

75. J.Muench,H.Francoeur,D.Okaya,Y.Cui,P.Maechling,E.Deelman,G.Mehta,R.Moore,andT.Jordan,SCECEarthworksScienceGateway:WideningSCECCommunityAccesstotheTeraGrid.TeraGrid2006Conference,2006.

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76. YolandaGil,VarunRatnakar,andEwaDeelman.VirtualMetadataCatalogs:AugmentingMetadataCatalogswithSemanticRepresentations,ShortpaperattheFourthInternationalSemanticWebConference(ISWC-05),Galway,Ireland,November7-10,2005.

77. E.Deelman,A.Galstyan,Y.Gil,M.Hall,K.Lerman,A.Nakano,P.Vashista,andJ.Saltz,ASystematicApproachtoComposingandOptimizingApplicationWorkflows,ProceedingsofWorkshoponPatternsinHighPerformanceComputing,Urbana-Champaign,2005.

78. DanielS.Katz,JosephC.Jacob,G.BruceBerriman,JohnGood,AnastasiaC.Laity,EwaDeelman,CarlKesselman,GurmeetSingh,Mei-HuiSu,ThomasA.Prince,AComparisonofTwoMethodsforBuildingAstronomicalImageMosaicsonaGrid.ICPPWorkshops2005:85-94

79. Seung-HyeJang,ValerieTaylor,XingfuWu,MiekePrajugo,EwaDeelman,GaurangMehta,andKaranVahi,PerformancePrediction-basedversusLoad-basedSiteSelection:QuantifyingtheDifference,the18thInternationalConferenceonParallelandDistributedComputingSystems(PDCS-2005),LasVegas,Nevada,12-14September2005.

80. JimBlythe,SonalJain,EwaDeelman,KaranVahi,YolandaGil,AnirbanMandal,KenKennedy,TaskSchedulingStrategiesforWorkflow-basedApplicationsinGrids,IEEEInternationalSymposiumonClusterComputingandtheGrid(CCGrid2005).

81. GurmeetSingh,EwaDeelman,GaurangMehta,KaranVahi,Mei-HuiSu,G.BruceBerriman,JohnGood,JosephC.Jacob,DanielS.Katz,AlbertLazzarini,KentBlackburn,andScottKoranda,ThePegasusPortal:WebBasedGridComputing,The20thAnnualACMSymposiumonAppliedComputing,SAC2005.

82. JimBlythe,EwaDeelman,YolandaGil.PlanningandMetadataontheComputationalGrid,InAAAISpringSymposiumonSemanticWebServices,PaloAlto,California,USA,2004.

83. RattapoomTuchinda,SnehalThakkar,YolandaGil,andEwaDeelman,Artemis:IntegratingScientificDataontheGrid,IntheproceedingsoftheSixteenthInnovativeApplicationsofArtificialIntelligence,SanJose,CA,July2004

84. EwaDeelman,GurmeetSingh,MalcolmP.Atkinson,AnnChervenak,NeilPChueHong,CarlKesselman,SonalPatil,LauraPearlman,Mei-HuiSu,Grid-BasedMetadataServices,SSDBM04,Santorini,Greece,June2004

85. I.FosterandothersintheiVDGLproject,TheGrid2003ProductionGrid:PrinciplesandPractice,HighPerformanceDistributedComputing,2004.HPDC-132004.

86. J.C.Jacob,D.S.Katz,T.Prince,G.B.Berriman,J.C.Good,A.C.Laity,E.Deelman,G.Singh,andM.-H.Su,TheMontageArchitectureforGrid-EnabledScienceProcessingofLarge,DistributedDatasets,ProceedingsoftheEarthScienceTechnologyConference(ESTC)2004,June2004.

87. G.B.Berriman,E.Deelman,J.Good,J.Jacob,D.S.Katz,C.Kesselman,A.Laity,T.A.Prince,G.Singh,andM.Su,Montage:aGridEnabledEngineforDeliveringCustomScience-GradeImageMosaicsonDemand,ProceedingsoftheSPIEConferenceonAstronomicalTelescopesandInstrumentation,June2004.

88. EwaDeelman,JamesBlythe,YolandaGil,CarlKesselman,GaurangMehta,SonalPatil,Mei-HuiSu,KaranVahi,MironLivny,Pegasus:MappingScientificWorkflowsontotheGrid,AcrossGridsConference2004,Nicosia,Cyprus.

89. JimBlythe,EwaDeelman,YolandaGil.PlanningandMetadataontheComputationalGrid,InAAAISpringSymposiumonSemanticWebServices,2004.

90. EwaDeelman,RaymondPlante,CarlKesselman,GurmeetSingh,Mei-HuiSu,GretchenGreene,RobertHanisch,NiallGaffney,AntonioVolpicelli,JamesAnnis,VijaySekhri,TamasBudavari,MariaNieto-Santisteban,WilliamO’Mullane,DavidBohlender,TomMcGlynn,ArnoldRots,OlgaPevunova,Grid-BasedGalaxyMorphologyAnalysisfortheNationalVirtualObservatory,ProceedingsofSC2003.

91. G.B.Berriman,J.C.Good,A.C.Laity,A.Bergou,J.Jacob,D.S.Katz,E.Deelman,C.Kesselman,G.Singh,M.-H.Su,R.Williams,MontageAGridEnabledImageMosaicServicefortheNationalVirtualObservatory,ADASSXIII,ASPConferenceSeriesVolXXX,FOchsenbeinM

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AllenandDEgreteds,2003.92. GurmeetSingh,ShishirBharathi,AnnChervenak,EwaDeelman,CarlKesselman,Mary

Manohar,SonalPatil,andLauraPearlman.AMetadataCatalogServiceforDataIntensiveApplications,ProceedingsofSC2003.

93. EwaDeelman,JamesBlythe,YolandaGil,CarlKesselman,ScottKoranda,AlbertLazzarini,GaurangMehta,MariaAlessandraPapa,KaranVahi,PegasusandthePulsarSearch:FromMetadatatoExecutionontheGrid.,ApplicationsGridWorkshop,PPAM2003,Czestochowa,Poland2003.

94. J.Blythe,E.Deelman,Y.Gil,C.Kesselman,A.Agarwal,G.Mehta,K.Vahi,TheRoleofPlanninginGridComputing,ICAPS,2003

95. J.Blythe,E.Deelman,Y.Gil,C.Kesselman,TransparentGridComputing:aKnowledge-BasedApproach.IAAI,2003.

96. A.Chervenak,E.Deelman,I.Foster,L.Guy,W.Hoschek,A.Iamnitchi,C.Kesselman,P.Kunst,M.Ripeanu,B,Schwartzkopf,H,Stockinger,K.Stockinger,B.Tierney.Giggle:AFrameworkforConstructingSclableReplicaLocationServices.ProceedingsofSupercomputing2002(SC2002),November2002.

97. E.Deelman,C.Kesselman,G.Mehta,L.Meshkat,L.Pearlman,K.Blackburn,P.Ehrens,A.Lazzarini,R.Williams,S.Koranda.GriPhyNandLIGO,buildingavirtualdatagridforgravitationalwavescientists.HighPerformanceDistributedComputing,2002.HPDC-112002.Page(s):225-234

98. E.Deelman,C.Kesselman,S.Koranda,K.BlackburnA.Lazzarini,andR.Williams.ApplicationsofVirtualDataintheLIGOExperiment,ProceedingsoftheInternationalConferenceonParallelProcessingandAppliedMathematics,Naleczow,Poland,September2001,LectureNotesinComputerScience.Vol.2328;Berlin,Germany:Springer-Verlag,2002,xix+915p.(23-34)

99. W.Allcock,I.Foster,V.Nefedova,A.Chervenak,E.Deelman,C.Kesselman,J.Lee,A.Sim,A.Shoshani,B.Drach,D.Williams.High-PerformanceRemoteAccesstoClimateSimulationData:AChallengeProblemforDataGridTechnologies.ProceedingsofSC2001,Denver,CO,November2001.

100. E.Deelman,R.Bagrodia,R.Sakellariou,V.Adve.ImprovingLookaheadinParallelDiscreteEventSimulationsofLarge-ScaleApplicationsUsingCompilerAnalysis.Proceedings15thWorkshoponParallelandDistributedSimulationp.5-13,LakeArrowhead,CA,USA;15-18May2001.(bestpaper)

101. E.Deelman,C.Kesselman,R.D.Williams,A.Lazzarini,T.A.Prince,J.Romano,B.Allen,AVirtualDataGridforLIGO,LectureNotesinComputerScience2110(2001)3,alsoProc.HPCN2001,Amsterdam,June2001.

102. V.S.Adve,R.Bagrodia,E.Deelman,T.Phan,andR.Sakellariou,Compiler-SupportedSimulationofHighlyScalableParallelApplications,ProceedingsofSC'99,Portland,OR,Nov13-19,1999.

103. R.Bagrodia,E.Deelman,S.Docy,T.Phan;PerformancePredictionofLargeParallelApplicationsUsingParallelSimulations.ACMSIGPLAN1999SymposiumonPrinciplesandPracticeofParallelProgramming,Atlanta,Georgia,May4-6,1999.

104. E.Deelman,A.Dube,A.Hoisie,Y.Luo,R.Oliver,D.Sundaram-Stukel,H.Wasserman,V.S.Adve,R.Bagrodia,J.C.Browne,E.Houstis,O.Lubeck,J.Rice,P.Teller,M.K.Vernon;POEMS:End-to-endPerformanceDesignofLargeParallelAdaptiveComputationalSystems.ProceedingsoftheFirstInternationalWorkshoponSoftwareandPerformance'98-WOSP'98,SantaFe,NewMexico,October12-16,1998.

105. E.Deelman,andB.K.Szymanski,Dynamicloadbalancinginparalleldiscreteeventsimulationforspatiallyexplicitproblems.ProceedingsoftheTwelfthWorkshoponParallelandDistributedSimulation,PADS'98,Banff,CA,May26-29,1998.

106. E.DeelmanandB.K.Szymanski.SystemKnowledgeAcquisitioninParallelDiscreteEventSimulation.Proceedingsofthe1997IEEEInternationalConferenceonSystemsManand

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Cybernetics,Orlando,FL,October12-15,1997107. E.DeelmanandB.K.Szymanski.ContinuouslyMonitoredGlobalVirtualTime.Proceedingsof

theInternationalConferenceonParallelandDistributedProcessingTechniquesandApplications,LasVegas,NV,June30-July3,1997.

108. E.DeelmanandB.K.Szymanski.Breadth-FirstRollbackinSpatiallyExplicitSimulations.Proceedingsofthe11thWorkshoponParallelandDistributedSimulation,PADS'97,Lockenhaus,Austria,June10-13,1997.

109. E.Deelman,B.K.SzymanskiandT.Caraco.SimulatingLymeDiseaseUsingParallelDiscreteEventSimulation.Proceedingsofthe1996WinterSimulationConference,SanDiego,CA,December8-11,1996.

110. B.K.Szymanski,E.Deelman,J.Flaherty,C.Norton,J.TerescoandL.Ziantz.ParallelScientificComputingontheIBMSP2atSCOREC-RensselaerPolytechnicInstitute.ProceedingsofSUP'EUR96,Krakow,Poland,September8-11,1996.

111. E.Deelman,T.CaracoandB.K.Szymanski.ParallelDiscreteEventSimulationofLymeDisease.Biocomputing:Proc.ofthe1996PacificSymposium,Hawaii,January3-6,1996.

112. E.Deelman,W.K.Kaplow,B.K.Szymanski,P.TannenbaumandL.Ziantz.IntegratingDataandTaskParallelisminScientificPrograms.ProceedingoftheWorkshoponLanguages,CompilersandRun-TimeSystemsforParallelProgramming,KluwerAcademicPublishers,Boston,1995.

BOOKCHAPTERS 1. EwaDeelmanandAnnChervenak,DataManagementinScientificWorkflows.DataIntensive

DistributedComputing:ChallengesandSolutionsforLarge-scaleInformationManagement.Ed.TevfikKosar.Hershey:IGIGlobal,2012.

2. RaphaelBolzeandEwaDeelman,ExploitingtheCloudofComputingEnvironments:AnApplication’sperspective,CloudComputingandSoftwareServices:TheoryandTechniques,EditorsSyedA.AhsonandMohammadIlyas,CRCPress,July2010

3. EwaDeelman,BruceBerriman,AnnChervenak,OscarCorcho,PaulGroth,LucMoreau,Metadataandprovenancemanagement,inScientificDataManagement:Challenges,Technology,andDeployment,Editors-ArieShoshani,DoronRotem,Series:Chapman&Hall/CRCComputationalScience,2009

4. BertramLudascher,IlkayAltintas,ShawnBowers,JulianCummings,TerenceCritchlow,EwaDeelman,DavidDeRoure,JulianaFreire,CaroleGoble,MatthewJones,ScottKlasky,TimothyMcPhillips,NorbertPodhorszki,ClaudioSilva,IanTaylor,MladenVouk,ScientificProcessAutomationandWorkflowManagement,inScientificDataManagement:Challenges,Technology,andDeployment,Editors-ArieShoshani,DoronRotem,Series:Chapman&Hall/CRCComputationalScience,2009

5. EwaDeelman,MironLivny,GaurangMehta,AndyPavlo,GurmeetSingh,Mei-HuiSu,KaranVahi,R.KentWenger,PegasusandDAGManFromConcepttoExecution:MappingScientificWorkflowsontoToday’sCyberinfrastructure,in"HighPerformanceComputingandGridsinAction"(L.GrandinettiEditor),IOSPress,Amsterdam,volume16intheseries"AdvancesinParallelComputing".March2008

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