Développement et distribution de
Serial Cloner
15 mai 2012, Journée PLUME Biologie, Montpellier
Franck Perez, CNRS UMR144
Institut [email protected]
• Licence, Maitrise, DEA de Génétique
• Thèse de Biologie Cellulaire
• 3 ans à l’Université de Génève
• Recruté par le CNRS en 1999 (Biologie)
• Directeur de Recherche CNRS en 2003
• Chef d’équipe à l’Institut Curie et Co-responsable d’une plateforme de criblage et d’une plateforme d’anticorps recombinants
Court CV
• Amstrad : ! ! Locomotive BASIC! ! ! ! Assembleur Z80
• PC :! ! ! ! TURBO PASCAL
• AtariST! ! ...
• MacIntosh! ! ...
Expérience / Programmation
• Hobbiste, autodidacte
Programmer un Macintosh
“Découverte” de RealBasic V2.x / V3.x
• BASIC orienté objet
• Génère un exécutable
• Plug-in en C/C++ si besoin
• Apparence “native” des applications produites
• Temps de développement “relativement” court
• Nombreux exemples, Web sites, forums
Aujourd’hui nommé “Real Studio”
Utilisation pour développer des utilitaires pour le laboratoire
MT-Simul Dimitrov et al., 2008
Développement de petits logiciels pour le labo
Image Extractor
Multi-HitList Compare Folders
RealStudio
PO BOX #162181Austin TX, 78716
voice: 512-328-7325fax: 512-328-7372
http://www.realsoftware.com/
Which edition is right for you?
Feature Personal Professional Enterprise Web
Best for: Hobbyists and Students Part-time developers Full-time developers All developers
Compiles native, high-quality applications
Development platforms Mac OS X, Windowsor Linux
Mac OS X, Windowsand Linux
Mac OS X, Windows,Linux and the web
the web
Networking support for TCP, UDP, Web (HTTP), Email(POP3 and SMTP) and SOAP
Playing Movies
Extensive support for bitmap and vector graphics
Support for Apple events, Keychain, Spotlight, the Dockand the Address Book (Mac Only) *
Includes RealSQLDatabase for single user applications
Use and decrypt encrypted classes
Report Editor
Encrypting classes
ServerSocket Class (More Info)
SSL Support (More Info)
Create console/cgi/service applications
Database server connectivity (Oracle, ODBC, Postgre,MySQL, Microsoft SQL [Windows only])
AES 128 Database Encryption
Remote Debugging (More Info)
ContainerControls (More Info)
Auto Discovery (More Info)
Technical support
Deploy on Mac OS X, Windows, Linux
Develop on Mac OS X, Windows and Linux
Deploy on OS X, Windows & Linux web servers
Profiler for code optimization (More Info)
IDE Scripting
Build Automation (More Info)
Priority technical support
# of updates included with new license 6 months 6 months 12 months 6 months
New License Price 79,00€ 249,00€ 825,00€ 475,00€
# of updates included with renewal 12 months 12 months 12 months 12 months
12 Month Renewal Price 39,00€ 120,00€ 415,00€ 239,00€
• Developpemement rapide
• interface native, MacOS, Windows, Linux
• Executable relativement véloce
MAIS
• Licence payante
• Communauté réduite
Serial Cloner
Biologie moléculaire / Génie génétique
Biologie moléculaire / Génie génétique
Le modèle : DNA Strider
• Très puissant (écrit en C)• Très utilisé• “simple”• Peu cher (400 € / Labo)
• interface vieillissante• peu ergonomique• très “textuel”• pas interactif• pas d’aide au clonage• pas de version Windows
Biologie moléculaire / Génie génétique
Développement de Serial Cloner
• Développé depuis 2005 (OS9)• Distribué depuis 2007• “Développeur/utilisateur”• Gratuit (donationware)
• simplicité• interface réactive, graphique• connection sources externes• aide au clonage• Version Mac & Windows (+Linux)
Serial Cloner
• Version Windows
• Version MacOSX
Serial Cloner - Demo
Serial Cloner - Demo
Serial Cloner - Demo
http://www.serialbasics.com
Home Softwares Serial Cloner Serial List MT Simul Serial Dialer Serial Cleaner
Laboratory tools
Distribution
Serial Cloner (Distribution Web)Home Softwares Serial Cloner Serial List MT Simul Serial Dialer Serial Cleaner
Serial Cloner is a Molecular Biology software.
It provides tools with an intuitive interfacethat assists you in DNA cloning, sequenceanalysis and visualization.
Serial Cloner is freeware and is available forMacOSX , Windows and Linux.
Serial Cloner also lets youbuild text restriction map andquickly format it to add multi-frame translation or onlyshow single cutters forexample. Since version 2.1,Sequence Features arevisible in the Sequence Map.The graphic map of SerialCloner is really Graphic asyou can easily select andextract a fragment or showsingle, double or multiplecutter all in the samewindow. All the features aredisplayed on the map usinguser-modifiable colors; the features can be manually entered, importedfrom GenBank or automatically found after scanning by Serial Cloner. The
All the tools you need to analyze and manipulate your sequences areavailable in an all-in-one-window concept. Numerically select fragments,find restriction sites, ORF or any nucleotide or peptide sequence, calculateTm of selected fragments, %GC or dynamically determine the translationyour selection into peptide and calculate the MW using a compactinterface.
Main Functions
Don’t clone alone
Fully Graphical MapSequence Window
Serial Cloner has been developed to provide a light yet powerful molecularbiology software to both Macintosh and Windows users. A Linux version isalso developped. Serial Cloner reads and write DNA Strider-compatiblefiles and import and export files in the universal FASTA format. SerialCloner also import files saved in the Vector NTI, MacVector, ApE,DNAstar, pDRAW32 and GenBank formats. Import from VectorNTI multi-file format is also possible now. Powerful graphical display tools andsimple interfaces help the analysis and construction steps in a veryintuitive way. Serial Cloner 2.5, handles Annotations and Features both inthe sequence and in the Graphic Map and can automatically scan forsequence Features.
Overview
An intuitive Interface
Sequence Alignment Sequence Map
Multi-Format importScan for Features
pDRAW32, ApE,Fasta, GenBank,MacVector,Vector NTI, DNAStrider, Text
Home Softwares Serial Cloner Serial List MT Simul Serial Dialer Serial Cleaner
Serial Cloner
SerialCloner 2-5 Installer
This version is provided “as is” and is unsupported. It has onlybeen tested on Ubuntu and has known interface problems butseems quite usable in 2.5, although not at the level of theother platform versions
version_2-5-details.txt
Serial Cloner is a Molecular Biology software.
It provides tools with an intuitive interface that assistsyou in DNA cloning, sequence analysis andvisualization.
Serial Cloner is freewareand is available for MacOSX, Windows and Linux
To Install Serial Cloner (Mac and Windows):Either download the installer or the compressed archive on the Version you want to install. When using the Installer, simply run it and follow theinstruction. When using the archive, download the file (Disk image for MacOSX or compressed Zipped file For Window, un-compress it and copythe resulting Serial Cloner Folder in your Application folder. Erase previous versions of Serial Cloner.For Linux, download the compressed tar archive, uncompress and copy Serial Cloner Folder in your Application folder.
Don’t clone alone
SerialCloner 2-5 Zip File
SerialCloner 2-5 Installer
SerialCloner 2-5 Disk Image
SerialCloner2-5 tar Archive
SerialCloner 2-5 (Universal) Installer
Serial Cloner 2-5 (Universal) disk image
Téléchargem
entsD
émarrages
Webalyzer
0
375
750
1 125
1 500
1 875
2 250
2 625
3 000Avri
l 07
Mai 07
Juin
07Ju
il 07
Août 0
7Sep
t 07
Oct 07
Nov 07
Déc 07
Jan 0
8Fe
v 08
Mars 08
Avril 0
8Mai
08Ju
in 08
Juil 0
8Aou
t 08
Sept 0
8Oct
08Nov
08Dec
08jan
09Fe
v 09
Mars 09
Avril 0
9Mai
09Ju
in 09
Juil 0
9AOut
09Sep
t 09
Oct 09
Nov 09
Dec 09
Jan 1
0Fe
v 10
Mars 10
Avril 1
0Mai
10Ju
in 10
Juille
t 10
Aout 1
0se
pt 10
Oct 10
NOv 10
Dec 10
Jan 1
1 Fe
v 11
Mars 11
Avril 1
1Mai
11Ju
in 11
Juil 1
1Aou
t 11
Sept 1
1Oct
11Nov
11Dec
11Ja
n 12
Fev 1
2Mars
12Avri
l 12
WindowsMacOS
0
6000
12000
18000
24000
30000
36000
42000
48000
54000
60000
Avril
07Mai
07Ju
in 07
Juil 0
7Aoû
t 07
Sept 0
7Oct
07Nov
07Déc
07Ja
n 08
Fev 0
8Mars
08Av
ril 08
Mai 08
Juin
08Ju
il 08
Aout 0
8Sep
t 08
Oct 08
Nov 08
Dec 08
jan 09
Fev 0
9Mars
09Av
ril 09
Mai 09
Juin
09Ju
il 09
AOut 09
Sept 0
9Oct
09Nov
09Dec
09Ja
n 10
Fev 1
0Mars
10Av
ril 10
Mai 10
Juin
10Ju
illet 1
0Aou
t 10
sept
10Oct
10NOv 1
0Dec
10Ja
n 11
Fev 1
1Mars
11Av
ril 11
Mai 11
Juin
11Ju
il 11
Aout 1
1Sep
t 11
Oct 11
Nov 11
Dec 11
Jan 1
2Fe
v 12
Mars 12
Avril
12
v1-3
v1-1
v2-0v2-1
v2-5
100 000 téléchargements sur 5 ans (5 versions)
Google Analytics
Serial Cloner - Utilisateurs
Serial Cloner - Licence
• Distribution comme freeware (Gratuiciel) / donationware• via un site web dédié
• Le code source n’est pas disponible• plus de 90% de utilisateurs ne sont pas des développeurs• code source peu professionnel, peu commenté• développement seul, jamais développé en groupe• contrôle des objectifs du logiciel, de l’interface• concept d’utilisateur - développeur
• Evolution du logiciel (suggestion/correction)• Utilisation personnelle• Equipe, amis & collègues• Email• Forum