Go to https://dev.openphacts.org
Sign up, sign in or use the app ID/app Keys available from:
http://goo.gl/z3rWwZ
Use the API from the documentation
View results in a browser
Write some code
What shall we do?
Anatomy of an API 1
Required elements with a single value
Optional elements with a single value
Optional elements with a single value or array
Anatomy of an API 2
URI identifying the item you are interested in
Application ID created at https://dev.openphacts.orgApplication Key for the application ID created at https://dev.openphacts.org
Compound Info
https://beta.openphacts.org/1.3/compound?uri=+http%3A%2F%2Fwww.conceptwiki.org%2Fconcept%2F38932552-111f-4a4e-a46a-4ed1d7bdf9d5&app_id=a921aad5&app_key=1be1aa775de4126dab09d54ef95e5832&_format=json
http://goo.gl/cjLiIZ
Compound Pharmacology
Count
https://beta.openphacts.org/1.3/compound/pharmacology/count?uri=http%3A%2F%2Fwww.conceptwiki.org%2Fconcept%2F38932552-111f-4a4e-a46a-4ed1d7bdf9d5&app_id=a921aad5&app_key=1be1aa775de4126dab09d54ef95e5832&_format=json
http://goo.gl/DNG4uA
Compound Pharmacology
List (page 1, 10 results)
https://beta.openphacts.org/1.3/compound/pharmacology/pages?uri=http%3A%2F%2Fwww.conceptwiki.org%2Fconcept%2F38932552-111f-4a4e-a46a-4ed1d7bdf9d5&app_id=a921aad5&app_key=1be1aa775de4126dab09d54ef95e5832&_format=json
http://goo.gl/nw4YFQ
Compound Pharmacology Filters
How many results are there with an IC50 less than or equal to 1500nM?
Compound Pharmacology Filters
Answer: 146https://beta.openphacts.org/1.3/compound/pharmacology/count?uri=http%3A%2F%2Fwww.conceptwiki.org%2Fconcept%2F38932552-111f-4a4e-a46a-4ed1d7bdf9d5&app_id=a921aad5&app_key=1be1aa775de4126dab09d54ef95e5832&activity_type=IC50&max-activity_value=1500&activity_unit=nanomolar&_format=json
activity_type=IC50
max-activity_value=1500
activity_unit=nanomolar
http://goo.gl/BbHmKN
First 30 results?
First 30 results?
https://beta.openphacts.org/1.3/compound/pharmacology/pages?uri=http%3A%2F%2Fwww.conceptwiki.org%2Fconcept%2F38932552-111f-4a4e-a46a-4ed1d7bdf9d5&app_id=a921aad5&app_key=1be1aa775de4126dab09d54ef95e5832&activity_type=IC50&max-activity_value=1500&activity_unit=nanomolar&_page=1&_pageSize=30&_format=json
activity_type=IC50
max-activity_value=1500
activity_unit=nanomolar
_page=1
_pageSize=30
http://goo.gl/LQmDLz
Write some code
Open up zip (available from http://goo.gl/NaN5BJ)
Start with an empty HTML page– Open compound.html in your browser (file:///….)
Not much to see here– Loads OPS.js and jQuery
Write some code
Open the HTML in your favourite text editor
Add some magic (http://goo.gl/JvE4mt) inside the JavaScript code block
appID = "a921aad5";appKey = "1be1aa775de4126dab09d54ef95e5832";var searcher = new Openphacts.CompoundSearch("https://beta.openphacts.org/1.3", appID, appKey);var callback = function(success, status, response) { var compoundResult = searcher.parseCompoundResponse(response); $("#compound-info").append("I am " + compoundResult.prefLabel + " with molecular weight " + compoundResult.fullMWT); };searcher.fetchCompound('http://www.conceptwiki.org/concept/38932552-111f-4a4e-a46a-4ed1d7bdf9d5', null, callback);
Refresh your browser
Open PHACTS widgets
Collaboration with Biojs
http://openphacts.github.io/ops-html-widgets/
https://github.com/biojs/biojs
Useful links
https://dev.openphacts.org/docs/1.3
https://explorer.openphacts.org
http://jupiter.cs.man.ac.uk
https://github.com/openphacts/ops.js
https://github.com/biojs/biojs
http://goo.gl/JvE4mt (OPS.js code example)
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