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Cartesian Genetic programming.
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What is CGP? CGP is a form of Automatic computer program
Evaluation (GP) Developed be Miller and Thompson 1997. Inspired from evaluation of digital circuit. Capable of encoding computer programs, electronic
circuits, neural network.
Representation Programs are represented as directed acyclic graphs
which are encoded in the form of a linear string of integer
Genes are Address in data (Connection genes) Address in a function lookup table (Function genes) Address in output data (Output genes)
Genotype is string of integers. Eg. 0 0 1 1 0 0 1 3 1 2 0 1 0 4 4 2 5 4 2 5 7 3
Genotype-to-Phenotype mapping Result from the decoding of a genotype is called
phenotype. Many-to-one genotype to phenotype mapping. Some genes in phenotype can be ignored
Evolution of CGP Genotypes Most CGP system use only mutation. Point-mutation
Mutation rate Gene location is change with other valid random value.
Function with other random valid address of function. Input gene value with valid output from any other node
or terminal node value. Output with address of output of other node in
genotype or terminal node value. Crossover
Genetic Redundancy Node redundancy
Genes those are not used in fitness calculation. Functional redundancy
Sub-function that actually may be implemented with fewer nodes
bloat Input redundancy
Node functions are not connected to some of the input node Neutrality
Adaptive evolution may cross regions with poor fitness in fitness landscape.
References “CGP Home.” Accessed November 27, 2012. http://www.cartesiangp.co.uk/ J.F. Miller(ed.), Cartesian Genetic Programming , Natural Computing Series, DOI 10.1007/978-3-642-17310-3 2,