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Simple and More Interactive tool For Codon Usage Analysis. MICROBIAL GENOMICS TOOL BETA VERSION 1.0 By Mr. Rajendra kumar Verma & Mr. Kishore Shende Sir

Microbial genomics tool beta version 1

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Page 1: Microbial genomics tool beta version 1

Simple and More Interactive tool For Codon Usage Analysis.

MICROBIAL GENOMICS TOOL BETA VERSION 1.0

By Mr. Rajendra kumar Verma

& Mr. Kishore Shende Sir

Page 2: Microbial genomics tool beta version 1

TAKE INPUT FASTA FILE

In bioinformatics, FASTA format is a text-based format for representing either nucleotide sequences or peptide sequences, in which nucleotides or amino acids are represented using single-letter codes. The format also allows for sequence names and comments to precede the sequences. The format originates from the FASTA software package, but has now become a standard in the field of bioinformatics.

A sequence in FASTA format begins with a single-line description, followed by lines of sequence data. The description line is distinguished from the sequence data by a greater-than (">") symbol in the first column. The word following the ">" symbol is the identifier of the sequence, and the rest of the line is the description (both are optional). There should be no space between the ">" and the first letter of the identifier. It is recommended that all lines of text be shorter than 80 characters. The sequence ends if another line starting with a ">" appears; this indicates the start of another sequence. A simple example of one sequence in FASTA format:

Page 3: Microbial genomics tool beta version 1

EXAMPLE OF FASTA FILE

Page 4: Microbial genomics tool beta version 1

THIS IS A TOOL

It gives output in text format and M.S Excel format in Frame and M.S Excel file.

Page 5: Microbial genomics tool beta version 1

(A+T)% (G+C)%0

1020304050607080

Series1

GC3s AT3s0

0.10.20.30.40.50.60.70.80.9

Series1Nc ENc0

5

10

15

20

25

30

Series1

06

1218

Amino Acid

Axis Title

Axis Title

A T G C0

100

200

300

400

Nucleotide Composition

Nucleotide Composition

Page 6: Microbial genomics tool beta version 1

THANK YO

U