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Improving Integrity, Transparency, and Reproducibility Through Connection of the Scholarly Workflow Andrew Sallans Partnerships Lead Center for Open Science

NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

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Page 1: NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

Improving Integrity, Transparency, and Reproducibility Through Connection of

the Scholarly Workflow

Andrew SallansPartnerships Lead

Center for Open Science

Page 2: NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

So, why is this important?

Page 3: NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

Norms vs. counternorms

Barriers and incentives

Page 4: NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

A little something about COS

• Est. 2013• Non-profit tech

startup • 4 leading

foundation funders, > $14M

• Located in Charlottesville, VA

• Team: ~ 25 FT & 20 interns

• Mostly software developers and researchers Mission: Improve openness, integrity, and

reproducibility of research

Page 5: NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

http://osf.io

Create an account

easy and free!

Page 6: NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

https://osf.io/settings

Modify Account Settings

Update

information

Page 7: NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

Dashboard

Project Organizer

Page 8: NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

Project Overview Page

Overview

Page 9: NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

Using the WikiIn the

menu

bar

Wiki

history

Add new

or edit

Now with

collaborative

editing!

Page 10: NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

Adding Components1. Click ‘Add Component”

2. Name the Component

3. Component shows as part of project

Page 11: NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

Adding Contributors

Select from

the results

Choose

permissions

Page 12: NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

Privacy

Page 13: NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

Uploading Files

Click upload button

or just drag and

drop

Page 14: NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

Versioning

See version history

and download

Page 15: NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

Registering Your WorkChoose the

registration

template

Create a frozen

registered version

Page 16: NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

Sharing Your Work

Create a

view-only link

Describe the

link use

Option to

make

anonymous

Select what parts of the

project to share

Page 17: NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

Unique and permanent IDs

Scientific content must be easy to cite and

annotate

Approach: GUIDs for all content

https://osf.io/e81xl -> RPCB

https://osf.io/alh38 -> Tim Errington

https://osf.io/ibdv8 -> Coding_Study_1.xslx

Page 18: NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

Connecting the

workflow through

Add Ons:

• Dropbox

• Github

• Dataverse

• Figshare

• AmazonS3

Page 19: NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

Tools used: next-gen sequencers, pipeline software, custom software

OSF features used: version control, file sharing, GitHub and Dropboxintegration, public sharing.

Page 20: NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

Problem to solve: teaching undergrads how to make research reproducible and verifiable.OSF features used: organization of documents and data, command files, metadata, and file sharing.

Page 21: NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

Want to join the effort?

Page 22: NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

Contribute to SHARE

• https://github.com/CenterForOpenScience/SHARE/wiki

• Contribute content

• Partner on curation of content

Page 23: NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

Bring a workshop to your campus• Free consulting and training• We send a consultant to run reproducible and open

practice workshops on your campus• Upcoming workshops: Duke, U of Florida, JMU,

Rutgers, Yale, Princeton, Penn, U of Maryland, and more

• See more: http://centerforopenscience.org/stats_consulting/

• Join email list: http://eepurl.com/2kghn

Page 24: NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

Serve as an AmbassadorWhat Ambassadors Do:

• Act as local information resource about COS, the OSF, transparency, and reproducible practices

• Represent COS at conferences and meetings• Grow the open science community• Blog experiences and join in the online

conversation• Provide training on OSF and reproducible

practices• Model COS swag!

Email us at [email protected] to hear more!

Page 25: NISO Virtual Conference Scientific Data Management: Caring for Your Institution and its Intellectual Wealth

Open Science Framework osf.io

Email: [email protected]

Twitter: @OSFramework