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Increase Your Multiplexing Capacity for SeqCap Target Capture

Bioo Scientific - Increase Your Multiplexing Capacity for SeqCap Target Capture

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Page 1: Bioo Scientific - Increase Your Multiplexing Capacity for SeqCap Target Capture

Increase Your Multiplexing Capacity for SeqCap

Target Capture

Page 2: Bioo Scientific - Increase Your Multiplexing Capacity for SeqCap Target Capture

Roche NimbleGen’s SeqCap EZ Library target enrichment system is a...

Page 3: Bioo Scientific - Increase Your Multiplexing Capacity for SeqCap Target Capture

Solution-based capture method & enables enrichment of the whole exome

or custom regions of interest

Page 4: Bioo Scientific - Increase Your Multiplexing Capacity for SeqCap Target Capture

One of the biggest drawbacks of the SeqCap EZ Library target enrichment

system is that there are...

Page 5: Bioo Scientific - Increase Your Multiplexing Capacity for SeqCap Target Capture

Only 24 barcodes and blockers available for multiplexing

Page 6: Bioo Scientific - Increase Your Multiplexing Capacity for SeqCap Target Capture

And they are supplied lyophilized which need to be resuspended

Page 7: Bioo Scientific - Increase Your Multiplexing Capacity for SeqCap Target Capture

Bioo Scientific has increased the ease and multiplexing capability of the

SeqCap target capture baits with the...

Page 10: Bioo Scientific - Increase Your Multiplexing Capacity for SeqCap Target Capture

Increasing the number of samples you can multiplex from 24 to 96

Page 11: Bioo Scientific - Increase Your Multiplexing Capacity for SeqCap Target Capture

Reducing the cost of targeted sequencing dramatically

Page 13: Bioo Scientific - Increase Your Multiplexing Capacity for SeqCap Target Capture

Which integrates with the SeqCap Target Capture System

Workflow Stage Reagents Needed Bioo Supplied NimbleGen Supplied

1. Library Preparation

NEXTflex DNA-Seq Library Reagents ✓

NEXTflex DNA Barcodes ✓

2. Hybridize Libraries to Probes

NimbleGen SeqCap Target Capture Baits ✓

NEXTflex DNA Barcode Blockers ✓

NimbleGen SeqCap Hybridization & Wash Kit ✓

NimbleGen SeqCap Pure Capture Bead Kit ✓

3. Amplify Captured Libraries NEXTflex Post-capture Amplification Reagents ✓

Page 14: Bioo Scientific - Increase Your Multiplexing Capacity for SeqCap Target Capture

The kit has also been validated by both Bioo Scientific and Roche for use with

SeqCap Target Capture

Page 15: Bioo Scientific - Increase Your Multiplexing Capacity for SeqCap Target Capture

Mapping & Coverage Statistics of the NEXTflex™ Pre-Capture Combo Kit

TargetedBases

63,564,965

Mapped Readson Target

75.6%

Raw ReadsMapped

80.0%

AverageCoverage

43.2x

RawReads

76,154,408

Sensitivity DetectingKnown SNPs

96.8%

Unique ReadsMapped

75.5%

Specificity DetectingKnown SNPs

99.2%

Four NEXTflex libraries were prepared from 1 µg of NA19238, NA19239, NA19240, or NA12762genomic DNA with NEXTflex index adapters using standard NEXTflex protocols. EZ Exome v3.0

targets were enriched from these multiplexed libraries.