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Multidisciplinary approach to target genetic and physiological markers useful for breeding and
postharvest managementFabrizio Costa
30%
Genomics
Breeding
Post
Harv
est
• Delearly: 2.30
• Granny Smith: 6.48
• Jazz: 7.14
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Factor 1: 55.39%
Factor 2: 20%
GDsnp01351Hi02B10
CH03G12_AGDsnp00014GDsnp02428GDsnp00152GDsnp01826GDsnp00631GDsnp01470GDsnp01266GDsnp01035GDsnp00345GDsnp01783GDsnp00440GDsnp00087GDsnp01680GDsnp00250GDsnp01676GDsnp00674GDsnp01693GDsnp01295GDsnp00252GDsnp00761GDsnp01257GDsnp00575GDsnp02371GDsnp01027GDsnp02092
CH05G08
FjxDel_1
8b 1b 2b 3b 4b 5b 6b
GDsnp01694Hi01C04_BGDsnp01566GDsnp01892GDsnp00284
Hi01C04_AGDsnp01978GDsnp01333GDsnp00238GDsnp00189GDsnp01942GDsnp02834GDsnp00638
Md-NORMd-PG5
GDsnp01993GDsnp00083GDsnp01304GDsnp00806
Md-MYBGDsnp02701
HI02A03GDsnp00382GDsnp01539GDsnp00151GDsnp01601GDsnp02674GDsnp00231
FjxDel_5
GDsnp00166GDsnp00197GDsnp01954GDsnp00967GDsnp00434GDsnp01219GDsnp00282GDsnp00787GDsnp01831GDsnp02464GDsnp00472GDsnp01716GDsnp00142
GDsnp00218GDsnp01681GDsnp01556GDsnp01682GDsnp01502GDsnp02138GDsnp01574
FjxDel_6
1a 9b GDsnp01961GDsnp00099GDsnp00360GDsnp00355GDsnp00065
Md-PG1_SSRGDsnp02072GDsnp02183
CH02C11GDsnp02009GDsnp01267GDsnp00781GDsnp00260snpCN880501
GDsnp00875GDsnp02051GDsnp01947GDsnp00106GDsnp01789
FjxDel_10
1a 2a 3a 4a 5a 6a 7a 8a 11a 12a 13a 14a10a 1b 2b 3b 4b 5b 6b 10b8b 11b 12b 13b 14b
GDsnp00173GDsnp01910GDsnp00116GDsnp00430GDsnp01690GDsnp00272
CH04G04GDsnp01373GDsnp00318GDsnp00275GDsnp02502GDsnp01045GDsnp01029GDsnp01995GDsnp01984GDsnp00747GDsnp00714GDsnp01426GDsnp01759GDsnp00391GDsnp00362GDsnp02008GDsnp00937GDsnp00915GDsnp00068GDsnp00296GDsnp01665GDsnp00338GDsnp01793
FjxDel_12
1b 2b 3b 4b 5b
snpEG631326GDsnp01767GDsnp00248
Hi21E04_AGDsnp00170GDsnp00165
CH01G05GDsnp00062GDsnp00453
Hi02D11GDsnp01590
Md-PECTGDsnp01522
AJ000761GDsnp00171GDsnp01811GDsnp00948
U78948Md-RINU78949
Md-MADSMd-PECT
GDsnp02021GDsnp00261
FjxDel_14
7a 10a9a7b
GDsnp01009GDsnp01763GDsnp01634GDsnp01131GDsnp00329GDsnp01469GDsnp00330GDsnp01454GDsnp00115GDsnp00191GDsnp01820GDsnp00111GDsnp01130GDsnp00274GDsnp00758GDsnp01989GDsnp00785GDsnp02003GDsnp00336GDsnp00031GDsnp00273GDsnp01146GDsnp00271GDsnp01630GDsnp01229GDsnp00954GDsnp00932GDsnp01265GDsnp01534GDsnp01813GDsnp01622GDsnp00984GDsnp02859GDsnp00692GDsnp00848GDsnp01850GDsnp00983GDsnp00962GDsnp02823
Md-ACS1GDsnp00241CH04G10_AGDsnp01247GDsnp00357GDsnp01971GDsnp01061GDsnp01774GDsnp01778GDsnp01392GDsnp00079GDsnp01805GDsnp01687GDsnp00661GDsnp00525
FjxDel_15
7a 9a 10b8b 11b 12b 13b7b
FjxDel_16
6b 14b
GDsnp01588GDsnp01600GDsnp01734GDsnp00269GDsnp00292GDsnp00923GDsnp00200GDsnp00069GDsnp01003GDsnp01866GDsnp00071GDsnp02087GDsnp01730GDsnp01244GDsnp01624GDsnp00356GDsnp00444GDsnp01563GDsnp00013GDsnp01495GDsnp02664GDsnp01402
Md-XET
FjxDel_17GDsnp00192GDsnp02075GDsnp01974GDsnp01241GDsnp00864GDsnp00290GDsnp00202
AJ0001681GDsnp00328GDsnp00262GDsnp02550GDsnp00178GDsnp01842GDsnp01269GDsnp01044GDsnp00401GDsnp00918GDsnp00287GDsnp00682GDsnp01801GDsnp00358GDsnp00058GDsnp01964
Md-WIZZGDsnp01098GDsnp00265GDsnp01887GDsnp00245GDsnp01467GDsnp00438
10a 7b10b05
1015
2025
3035
40
45
50
55
6065
7075
8085
9095
100
0
5
10
15
2025
3035
40
45
5055
60
65
7075
8085
9095
100
05
1015
2025
3035
4045
5055
60
65
70
75
80
85
90
95
100
05
1015
20
25
30
35
4045
5055
6065
7075
80
85
9095
100
05
10
15
2025
3035
4045
5055
6065
70
75
8085
90
95
100
05
1015
2025
3035
4045
5055
60
65
70
75
8085
9095
100
05
10
15
2025
3035
40
45
50
55
60
65
7075
8085
9095
100
05
10
15
2025
3035
4045
5055
60
65
7075
8085
9095
100
05
10
15
2025
3035
40
45
50
55
60
65
70
75
8085
9095
100
GDsnp01351Hi02B10
CH03G12_AGDsnp00014GDsnp02428GDsnp00152GDsnp01826GDsnp00631GDsnp01470GDsnp01266GDsnp01035GDsnp00345GDsnp01783GDsnp00440GDsnp00087GDsnp01680GDsnp00250GDsnp01676GDsnp00674GDsnp01693GDsnp01295GDsnp00252GDsnp00761GDsnp01257GDsnp00575GDsnp02371GDsnp01027GDsnp02092
CH05G08
FjxDel_1
8b 1b 2b 3b 4b 5b 6b
GDsnp01694Hi01C04_BGDsnp01566GDsnp01892GDsnp00284
Hi01C04_AGDsnp01978GDsnp01333GDsnp00238GDsnp00189GDsnp01942GDsnp02834GDsnp00638
Md-NORMd-PG5
GDsnp01993GDsnp00083GDsnp01304GDsnp00806
Md-MYBGDsnp02701
HI02A03GDsnp00382GDsnp01539GDsnp00151GDsnp01601GDsnp02674GDsnp00231
FjxDel_5
GDsnp00166GDsnp00197GDsnp01954GDsnp00967GDsnp00434GDsnp01219GDsnp00282GDsnp00787GDsnp01831GDsnp02464GDsnp00472GDsnp01716GDsnp00142
GDsnp00218GDsnp01681GDsnp01556GDsnp01682GDsnp01502GDsnp02138GDsnp01574
FjxDel_6
1a 9b GDsnp01961GDsnp00099GDsnp00360GDsnp00355GDsnp00065
Md-PG1_SSRGDsnp02072GDsnp02183
CH02C11GDsnp02009GDsnp01267GDsnp00781GDsnp00260snpCN880501
GDsnp00875GDsnp02051GDsnp01947GDsnp00106GDsnp01789
FjxDel_10
1a 2a 3a 4a 5a 6a 7a 8a 11a 12a 13a 14a10a 1b 2b 3b 4b 5b 6b 10b8b 11b 12b 13b 14b
GDsnp00173GDsnp01910GDsnp00116GDsnp00430GDsnp01690GDsnp00272
CH04G04GDsnp01373GDsnp00318GDsnp00275GDsnp02502GDsnp01045GDsnp01029GDsnp01995GDsnp01984GDsnp00747GDsnp00714GDsnp01426GDsnp01759GDsnp00391GDsnp00362GDsnp02008GDsnp00937GDsnp00915GDsnp00068GDsnp00296GDsnp01665GDsnp00338GDsnp01793
FjxDel_12
1b 2b 3b 4b 5b
snpEG631326GDsnp01767GDsnp00248
Hi21E04_AGDsnp00170GDsnp00165
CH01G05GDsnp00062GDsnp00453
Hi02D11GDsnp01590
Md-PECTGDsnp01522
AJ000761GDsnp00171GDsnp01811GDsnp00948
U78948Md-RINU78949
Md-MADSMd-PECT
GDsnp02021GDsnp00261
FjxDel_14
7a 10a9a7b
GDsnp01009GDsnp01763GDsnp01634GDsnp01131GDsnp00329GDsnp01469GDsnp00330GDsnp01454GDsnp00115GDsnp00191GDsnp01820GDsnp00111GDsnp01130GDsnp00274GDsnp00758GDsnp01989GDsnp00785GDsnp02003GDsnp00336GDsnp00031GDsnp00273GDsnp01146GDsnp00271GDsnp01630GDsnp01229GDsnp00954GDsnp00932GDsnp01265GDsnp01534GDsnp01813GDsnp01622GDsnp00984GDsnp02859GDsnp00692GDsnp00848GDsnp01850GDsnp00983GDsnp00962GDsnp02823
Md-ACS1GDsnp00241CH04G10_AGDsnp01247GDsnp00357GDsnp01971GDsnp01061GDsnp01774GDsnp01778GDsnp01392GDsnp00079GDsnp01805GDsnp01687GDsnp00661GDsnp00525
FjxDel_15
7a 9a 10b8b 11b 12b 13b7b
FjxDel_16
6b 14b
GDsnp01588GDsnp01600GDsnp01734GDsnp00269GDsnp00292GDsnp00923GDsnp00200GDsnp00069GDsnp01003GDsnp01866GDsnp00071GDsnp02087GDsnp01730GDsnp01244GDsnp01624GDsnp00356GDsnp00444GDsnp01563GDsnp00013GDsnp01495GDsnp02664GDsnp01402
Md-XET
FjxDel_17GDsnp00192GDsnp02075GDsnp01974GDsnp01241GDsnp00864GDsnp00290GDsnp00202
AJ0001681GDsnp00328GDsnp00262GDsnp02550GDsnp00178GDsnp01842GDsnp01269GDsnp01044GDsnp00401GDsnp00918GDsnp00287GDsnp00682GDsnp01801GDsnp00358GDsnp00058GDsnp01964
Md-WIZZGDsnp01098GDsnp00265GDsnp01887GDsnp00245GDsnp01467GDsnp00438
10a 7b10b05
1015
2025
3035
40
45
50
55
6065
7075
8085
9095
100
05
1015
2025
3035
40
45
50
55
6065
7075
8085
9095
100
0
5
10
15
2025
3035
40
45
5055
60
65
7075
8085
9095
100
0
5
10
15
2025
3035
40
45
5055
60
65
7075
8085
9095
100
05
1015
2025
3035
4045
5055
60
65
70
75
80
85
90
95
100
05
1015
2025
3035
4045
5055
60
65
70
75
80
85
90
95
100
05
1015
20
25
30
35
4045
5055
6065
7075
80
85
9095
100
05
1015
20
25
30
35
4045
5055
6065
7075
80
85
9095
100
05
10
15
2025
3035
4045
5055
6065
70
75
8085
90
95
100
05
10
15
2025
3035
4045
5055
6065
70
75
8085
90
95
100
05
1015
2025
3035
4045
5055
60
65
70
75
8085
9095
100
05
1015
2025
3035
4045
5055
60
65
70
75
8085
9095
100
05
10
15
2025
3035
40
45
50
55
60
65
7075
8085
9095
100
05
10
15
2025
3035
40
45
50
55
60
65
7075
8085
9095
100
05
10
15
2025
3035
4045
5055
60
65
7075
8085
9095
100
05
10
15
2025
3035
4045
5055
60
65
7075
8085
9095
100
05
10
15
2025
3035
40
45
50
55
60
65
70
75
8085
9095
100
05
10
15
2025
3035
40
45
50
55
60
65
70
75
8085
9095
100
Hi02B10CH03G12_zGDsnp00014GDsnp00152GDsnp02580GDsnp01351GDsnp00533GDsnp01815GDsnp01783GDsnp00440GDsnp01500GDsnp00697GDsnp00250
GDsnp00252GDsnp01295GDsnp01693GDsnp01035
FjxPL_1
05101520253035404550556065707580859095100105110
9bHi02B10CH03G12_zGDsnp00014GDsnp00152GDsnp02580GDsnp01351GDsnp00533GDsnp01815GDsnp01783GDsnp00440GDsnp01500GDsnp00697GDsnp00250
GDsnp00252GDsnp01295GDsnp01693GDsnp01035
FjxPL_1
05101520253035404550556065707580859095100105110
05101520253035404550556065707580859095100105110
9b 7a 10a
GDsnp02304GDsnp00078GDsnp01957GDsnp00085GDsnp00322GDsnp00480GDsnp00588GDsnp01851GDsnp01493
CH03G07GDsnp00477GDsnp02027GDsnp00194GDsnp02020GDsnp01982GDsnp01821GDsnp00921GDsnp00089GDsnp00233GDsnp00955GDsnp00278GDsnp02094GDsnp00317GDsnp01969GDsnp01937GDsnp01329GDsnp00080GDsnp01667GDsnp02030GDsnp01396GDsnp01073CH03G12_B
FjxPL_3
7b05101520253035404550556065707580859095100105110
7a 10a
GDsnp02304GDsnp00078GDsnp01957GDsnp00085GDsnp00322GDsnp00480GDsnp00588GDsnp01851GDsnp01493
CH03G07GDsnp00477GDsnp02027GDsnp00194GDsnp02020GDsnp01982GDsnp01821GDsnp00921GDsnp00089GDsnp00233GDsnp00955GDsnp00278GDsnp02094GDsnp00317GDsnp01969GDsnp01937GDsnp01329GDsnp00080GDsnp01667GDsnp02030GDsnp01396GDsnp01073CH03G12_B
FjxPL_3
7b05101520253035404550556065707580859095100105110
05101520253035404550556065707580859095100105110
GDsnp01780GDsnp01702
GDsnp01872GDsnp01997GDsnp00051GDsnp00562GDsnp01994GDsnp01170GDsnp00224GDsnp00590GDsnp01074GDsnp02274GDsnp00871GDsnp00256GDsnp00247GDsnp02840GDsnp01848
CH04E05GDsnp02291GDsnp01516GDsnp01040
FjxPL_7
05101520253035404550556065707580859095100105110
9a 10a 9bGDsnp01780GDsnp01702
GDsnp01872GDsnp01997GDsnp00051GDsnp00562GDsnp01994GDsnp01170GDsnp00224GDsnp00590GDsnp01074GDsnp02274GDsnp00871GDsnp00256GDsnp00247GDsnp02840GDsnp01848
CH04E05GDsnp02291GDsnp01516GDsnp01040
FjxPL_7
05101520253035404550556065707580859095100105110
05101520253035404550556065707580859095100105110
9a 10a 9b
GDsnp00299GDsnp01862GDsnp00975GDsnp01405GDsnp01764GDsnp00293GDsnp00342
CH01H10AGDsnp00155GDsnp01598GDsnp01479GDsnp00862GDsnp00320GDsnp00311GDsnp00157GDsnp01004GDsnp00639GDsnp00209GDsnp01048GDsnp02037GDsnp02022GDsnp00584snpCO066276
CH01C06GDsnp00204GDsnp00316GDsnp00188GDsnp00487GDsnp00688GDsnp01059GDsnp01614GDsnp00175GDsnp00527GDsnp00503GDsnp01550
Md-CCR4
FjxPL_8
05101520253035404550556065707580859095100105110
3b
GDsnp00299GDsnp01862GDsnp00975GDsnp01405GDsnp01764GDsnp00293GDsnp00342
CH01H10AGDsnp00155GDsnp01598GDsnp01479GDsnp00862GDsnp00320GDsnp00311GDsnp00157GDsnp01004GDsnp00639GDsnp00209GDsnp01048GDsnp02037GDsnp02022GDsnp00584snpCO066276
CH01C06GDsnp00204GDsnp00316GDsnp00188GDsnp00487GDsnp00688GDsnp01059GDsnp01614GDsnp00175GDsnp00527GDsnp00503GDsnp01550
Md-CCR4
FjxPL_8
05101520253035404550556065707580859095100105110
05101520253035404550556065707580859095100105110
3bGDsnp00253
GDsnp00351GDsnp00225GDsnp01912GDsnp00418GDsnp01713GDsnp01112GDsnp01483GDsnp02281GDsnp00254GDsnp00185GDsnp00240GDsnp00037GDsnp01640GDsnp01878GDsnp01804GDsnp00743GDsnp01486GDsnp02005GDsnp01797GDsnp01857GDsnp20003GDsnp00004GDsnp00795
CH04D10GDsnp00646GDsnp00029GDsnp00182
FjxPL_11
3a 4a 6a05101520253035404550556065707580859095100105110
GDsnp00253
GDsnp00351GDsnp00225GDsnp01912GDsnp00418GDsnp01713GDsnp01112GDsnp01483GDsnp02281GDsnp00254GDsnp00185GDsnp00240GDsnp00037GDsnp01640GDsnp01878GDsnp01804GDsnp00743GDsnp01486GDsnp02005GDsnp01797GDsnp01857GDsnp20003GDsnp00004GDsnp00795
CH04D10GDsnp00646GDsnp00029GDsnp00182
FjxPL_11
3a 4a 6a05101520253035404550556065707580859095100105110
05101520253035404550556065707580859095100105110
GDsnp00173GDsnp00116GDsnp02857GDsnp01690GDsnp00272GDsnp01373GDsnp00275GDsnp02502GDsnp00318GDsnp00220GDsnp01501GDsnp02537
CH04G04GDsnp00747GDsnp00362GDsnp00391GDsnp01759GDsnp00714GDsnp01984GDsnp01995GDsnp01426GDsnp02008GDsnp00937GDsnp01665GDsnp01793GDsnp00338
FjxPL_12
8a 11a 12a 14a 8b 11b 12b 13b 14b05101520253035404550556065707580859095100105110
GDsnp00173GDsnp00116GDsnp02857GDsnp01690GDsnp00272GDsnp01373GDsnp00275GDsnp02502GDsnp00318GDsnp00220GDsnp01501GDsnp02537
CH04G04GDsnp00747GDsnp00362GDsnp00391GDsnp01759GDsnp00714GDsnp01984GDsnp01995GDsnp01426GDsnp02008GDsnp00937GDsnp01665GDsnp01793GDsnp00338
FjxPL_12
8a 11a 12a 14a 8b 11b 12b 13b 14b05101520253035404550556065707580859095100105110
05101520253035404550556065707580859095100105110
1a 2a 3a 4a 5a 6a 13a 14aGDsnp01600GDsnp00269GDsnp00292GDsnp00047
Hi22F06GDsnp01734GDsnp00719GDsnp00923GDsnp00069GDsnp00200GDsnp01094GDsnp01116GDsnp01627
GDsnp00071GDsnp01866GDsnp00578
GDsnp01244GDsnp01730
GDsnp00444
GDsnp01495
Md-XET
GDsnp00626
FjxPL_16
1b 2b 3b 4b 5b 6b 7b 13b 14b05101520253035404550556065707580859095100105110
1a 2a 3a 4a 5a 6a 13a 14aGDsnp01600GDsnp00269GDsnp00292GDsnp00047
Hi22F06GDsnp01734GDsnp00719GDsnp00923GDsnp00069GDsnp00200GDsnp01094GDsnp01116GDsnp01627
GDsnp00071GDsnp01866GDsnp00578
GDsnp01244GDsnp01730
GDsnp00444
GDsnp01495
Md-XET
GDsnp00626
FjxPL_16
1b 2b 3b 4b 5b 6b 7b 13b 14b05101520253035404550556065707580859095100105110
05101520253035404550556065707580859095100105110
Zoom on LG 10: Md-PG1 storyGDsnp01351
Hi02B10CH03G12_AGDsnp00014GDsnp02428GDsnp00152GDsnp01826GDsnp00631GDsnp01470GDsnp01266GDsnp01035GDsnp00345GDsnp01783GDsnp00440GDsnp00087GDsnp01680GDsnp00250GDsnp01676GDsnp00674GDsnp01693GDsnp01295GDsnp00252GDsnp00761GDsnp01257GDsnp00575GDsnp02371GDsnp01027GDsnp02092
CH05G08
FjxDel_1
8b 1b 2b 3b 4b 5b 6b
GDsnp01694Hi01C04_BGDsnp01566GDsnp01892GDsnp00284
Hi01C04_AGDsnp01978GDsnp01333GDsnp00238GDsnp00189GDsnp01942GDsnp02834GDsnp00638
Md-NORMd-PG5
GDsnp01993GDsnp00083GDsnp01304GDsnp00806
Md-MYBGDsnp02701
HI02A03GDsnp00382GDsnp01539GDsnp00151GDsnp01601GDsnp02674GDsnp00231
FjxDel_5
GDsnp00166GDsnp00197GDsnp01954GDsnp00967GDsnp00434GDsnp01219GDsnp00282GDsnp00787GDsnp01831GDsnp02464GDsnp00472GDsnp01716GDsnp00142
GDsnp00218GDsnp01681GDsnp01556GDsnp01682GDsnp01502GDsnp02138GDsnp01574
FjxDel_6
1a 9b GDsnp01961GDsnp00099GDsnp00360GDsnp00355GDsnp00065
Md-PG1_SSRGDsnp02072GDsnp02183
CH02C11GDsnp02009GDsnp01267GDsnp00781GDsnp00260snpCN880501
GDsnp00875GDsnp02051GDsnp01947GDsnp00106GDsnp01789
FjxDel_10
1a 2a 3a 4a 5a 6a 7a 8a 11a 12a 13a 14a10a 1b 2b 3b 4b 5b 6b 10b8b 11b 12b 13b 14b
GDsnp00173GDsnp01910GDsnp00116GDsnp00430GDsnp01690GDsnp00272
CH04G04GDsnp01373GDsnp00318GDsnp00275GDsnp02502GDsnp01045GDsnp01029GDsnp01995GDsnp01984GDsnp00747GDsnp00714GDsnp01426GDsnp01759GDsnp00391GDsnp00362GDsnp02008GDsnp00937GDsnp00915GDsnp00068GDsnp00296GDsnp01665GDsnp00338GDsnp01793
FjxDel_12
1b 2b 3b 4b 5b
snpEG631326GDsnp01767GDsnp00248
Hi21E04_AGDsnp00170GDsnp00165
CH01G05GDsnp00062GDsnp00453
Hi02D11GDsnp01590
Md-PECTGDsnp01522
AJ000761GDsnp00171GDsnp01811GDsnp00948
U78948Md-RINU78949
Md-MADSMd-PECT
GDsnp02021GDsnp00261
FjxDel_14
7a 10a9a7b
GDsnp01009GDsnp01763GDsnp01634GDsnp01131GDsnp00329GDsnp01469GDsnp00330GDsnp01454GDsnp00115GDsnp00191GDsnp01820GDsnp00111GDsnp01130GDsnp00274GDsnp00758GDsnp01989GDsnp00785GDsnp02003GDsnp00336GDsnp00031GDsnp00273GDsnp01146GDsnp00271GDsnp01630GDsnp01229GDsnp00954GDsnp00932GDsnp01265GDsnp01534GDsnp01813GDsnp01622GDsnp00984GDsnp02859GDsnp00692GDsnp00848GDsnp01850GDsnp00983GDsnp00962GDsnp02823
Md-ACS1GDsnp00241CH04G10_AGDsnp01247GDsnp00357GDsnp01971GDsnp01061GDsnp01774GDsnp01778GDsnp01392GDsnp00079GDsnp01805GDsnp01687GDsnp00661GDsnp00525
FjxDel_15
7a 9a 10b8b 11b 12b 13b7b
FjxDel_16
6b 14b
GDsnp01588GDsnp01600GDsnp01734GDsnp00269GDsnp00292GDsnp00923GDsnp00200GDsnp00069GDsnp01003GDsnp01866GDsnp00071GDsnp02087GDsnp01730GDsnp01244GDsnp01624GDsnp00356GDsnp00444GDsnp01563GDsnp00013GDsnp01495GDsnp02664GDsnp01402
Md-XET
FjxDel_17GDsnp00192GDsnp02075GDsnp01974GDsnp01241GDsnp00864GDsnp00290GDsnp00202
AJ0001681GDsnp00328GDsnp00262GDsnp02550GDsnp00178GDsnp01842GDsnp01269GDsnp01044GDsnp00401GDsnp00918GDsnp00287GDsnp00682GDsnp01801GDsnp00358GDsnp00058GDsnp01964
Md-WIZZGDsnp01098GDsnp00265GDsnp01887GDsnp00245GDsnp01467GDsnp00438
10a 7b10b05
10
15
20
25
30
35
40
45
5055
6065
7075
8085
9095
100
0
5
1015
2025
3035
4045
50
55
60
65
70
75
80
85
9095
100
0
5
1015
2025
3035
4045
50
55
60
65
70
75
80
85
90
95
100
05
1015
20
25
30
35
40
45
50
55
6065
7075
8085
90
95
100
05
1015
2025
30
35
4045
5055
60
65
70
75
80
85
9095
100
0
5
1015
2025
3035
40
45
50
55
6065
7075
8085
9095
100
0
5
1015
20
25
30
35
40
45
50
55
6065
7075
8085
90
95
100
0
5
1015
2025
3035
4045
50
55
60
65
70
75
80
85
9095
100
0
5
1015
2025
3035
4045
50
55
60
65
70
75
80
85
9095
100
GDsnp01351Hi02B10
CH03G12_AGDsnp00014GDsnp02428GDsnp00152GDsnp01826GDsnp00631GDsnp01470GDsnp01266GDsnp01035GDsnp00345GDsnp01783GDsnp00440GDsnp00087GDsnp01680GDsnp00250GDsnp01676GDsnp00674GDsnp01693GDsnp01295GDsnp00252GDsnp00761GDsnp01257GDsnp00575GDsnp02371GDsnp01027GDsnp02092
CH05G08
FjxDel_1
8b 1b 2b 3b 4b 5b 6b
GDsnp01694Hi01C04_BGDsnp01566GDsnp01892GDsnp00284
Hi01C04_AGDsnp01978GDsnp01333GDsnp00238GDsnp00189GDsnp01942GDsnp02834GDsnp00638
Md-NORMd-PG5
GDsnp01993GDsnp00083GDsnp01304GDsnp00806
Md-MYBGDsnp02701
HI02A03GDsnp00382GDsnp01539GDsnp00151GDsnp01601GDsnp02674GDsnp00231
FjxDel_5
GDsnp00166GDsnp00197GDsnp01954GDsnp00967GDsnp00434GDsnp01219GDsnp00282GDsnp00787GDsnp01831GDsnp02464GDsnp00472GDsnp01716GDsnp00142
GDsnp00218GDsnp01681GDsnp01556GDsnp01682GDsnp01502GDsnp02138GDsnp01574
FjxDel_6
1a 9b GDsnp01961GDsnp00099GDsnp00360GDsnp00355GDsnp00065
Md-PG1_SSRGDsnp02072GDsnp02183
CH02C11GDsnp02009GDsnp01267GDsnp00781GDsnp00260snpCN880501
GDsnp00875GDsnp02051GDsnp01947GDsnp00106GDsnp01789
FjxDel_10
1a 2a 3a 4a 5a 6a 7a 8a 11a 12a 13a 14a10a 1b 2b 3b 4b 5b 6b 10b8b 11b 12b 13b 14b
GDsnp00173GDsnp01910GDsnp00116GDsnp00430GDsnp01690GDsnp00272
CH04G04GDsnp01373GDsnp00318GDsnp00275GDsnp02502GDsnp01045GDsnp01029GDsnp01995GDsnp01984GDsnp00747GDsnp00714GDsnp01426GDsnp01759GDsnp00391GDsnp00362GDsnp02008GDsnp00937GDsnp00915GDsnp00068GDsnp00296GDsnp01665GDsnp00338GDsnp01793
FjxDel_12
1b 2b 3b 4b 5b
snpEG631326GDsnp01767GDsnp00248
Hi21E04_AGDsnp00170GDsnp00165
CH01G05GDsnp00062GDsnp00453
Hi02D11GDsnp01590
Md-PECTGDsnp01522
AJ000761GDsnp00171GDsnp01811GDsnp00948
U78948Md-RINU78949
Md-MADSMd-PECT
GDsnp02021GDsnp00261
FjxDel_14
7a 10a9a7b
GDsnp01009GDsnp01763GDsnp01634GDsnp01131GDsnp00329GDsnp01469GDsnp00330GDsnp01454GDsnp00115GDsnp00191GDsnp01820GDsnp00111GDsnp01130GDsnp00274GDsnp00758GDsnp01989GDsnp00785GDsnp02003GDsnp00336GDsnp00031GDsnp00273GDsnp01146GDsnp00271GDsnp01630GDsnp01229GDsnp00954GDsnp00932GDsnp01265GDsnp01534GDsnp01813GDsnp01622GDsnp00984GDsnp02859GDsnp00692GDsnp00848GDsnp01850GDsnp00983GDsnp00962GDsnp02823
Md-ACS1GDsnp00241CH04G10_AGDsnp01247GDsnp00357GDsnp01971GDsnp01061GDsnp01774GDsnp01778GDsnp01392GDsnp00079GDsnp01805GDsnp01687GDsnp00661GDsnp00525
FjxDel_15
7a 9a 10b8b 11b 12b 13b7b
FjxDel_16
6b 14b
GDsnp01588GDsnp01600GDsnp01734GDsnp00269GDsnp00292GDsnp00923GDsnp00200GDsnp00069GDsnp01003GDsnp01866GDsnp00071GDsnp02087GDsnp01730GDsnp01244GDsnp01624GDsnp00356GDsnp00444GDsnp01563GDsnp00013GDsnp01495GDsnp02664GDsnp01402
Md-XET
FjxDel_17GDsnp00192GDsnp02075GDsnp01974GDsnp01241GDsnp00864GDsnp00290GDsnp00202
AJ0001681GDsnp00328GDsnp00262GDsnp02550GDsnp00178GDsnp01842GDsnp01269GDsnp01044GDsnp00401GDsnp00918GDsnp00287GDsnp00682GDsnp01801GDsnp00358GDsnp00058GDsnp01964
Md-WIZZGDsnp01098GDsnp00265GDsnp01887GDsnp00245GDsnp01467GDsnp00438
10a 7b10b05
10
15
20
25
30
35
40
45
5055
6065
7075
8085
9095
100
05
10
15
20
25
30
35
40
45
5055
6065
7075
8085
9095
100
0
5
1015
2025
3035
4045
50
55
60
65
70
75
80
85
9095
100
0
5
1015
2025
3035
4045
50
55
60
65
70
75
80
85
9095
100
0
5
1015
2025
3035
4045
50
55
60
65
70
75
80
85
90
95
100
0
5
1015
2025
3035
4045
50
55
60
65
70
75
80
85
90
95
100
05
1015
20
25
30
35
40
45
50
55
6065
7075
8085
90
95
100
05
1015
20
25
30
35
40
45
50
55
6065
7075
8085
90
95
100
05
1015
2025
30
35
4045
5055
60
65
70
75
80
85
9095
100
05
1015
2025
30
35
4045
5055
60
65
70
75
80
85
9095
100
0
5
1015
2025
3035
40
45
50
55
6065
7075
8085
9095
100
0
5
1015
2025
3035
40
45
50
55
6065
7075
8085
9095
100
0
5
1015
20
25
30
35
40
45
50
55
6065
7075
8085
90
95
100
0
5
1015
20
25
30
35
40
45
50
55
6065
7075
8085
90
95
100
0
5
1015
2025
3035
4045
50
55
60
65
70
75
80
85
9095
100
0
5
1015
2025
3035
4045
50
55
60
65
70
75
80
85
9095
100
0
5
1015
2025
3035
4045
50
55
60
65
70
75
80
85
9095
100
0
5
1015
2025
3035
4045
50
55
60
65
70
75
80
85
9095
100
Md- PG13 kb upstream 10 kb downstream
Md-PG1SSR_10.1Kd_289
Md-PG1SSR_10.2Kd_291
Md-PG1SSR_10.3Kd_297
Md-PG1SSR_10.3Kd_297
23
4
5
6
7
89
1011
1314
1576
17
18
1920
21
22
23
2425
26 29
30
3132
33
3577
363738
4142 43
44
4045
46
47
48
49 5051
52
54
55
56
75
58
59
60
74
62 63
64
67
65
68
66 69
73
72
-8 -6 -4 -2 0 2 4 6 8-6
-4
-2
0
2
4
6
23
4
5
6
7
89
1011
1314
1576
17
18
1920
21
22
23
2425
26 29
30
3132
33
3577
363738
4142 43
44
4045
46
47
48
49 5051
52
54
55
56
75
58
59
60
74
62 63
64
67
65
68
66 69
73
72
1
2
3
46
89
10
1112
13
14
15
16
17
1819
20
21
22 23
24
25 26
27
28
29
30
31
32
33
34
353637
38
3940
41
42
43
44
45
46
47
48
49 5051
52
5354
55 565758
5960
61
62
6364
65
66
6768
69
70
71
72
-8 -6 -4 -2 0 2 4 6 8-6
-2
2
6
1
2
3
46
89
10
1112
13
14
15
16
17
1819
20
21
22 23
24
25 26
27
28
29
30
31
32
33
34
353637
38
3940
41
42
43
44
45
46
47
48
49 5051
52
5354
55 565758
5960
61
62
6364
65
66
6768
69
70
71
72
Last step: the Validation
‘Deloria’
‘Topaz’
‘Gala’
‘Braeburn’
1 2 3
Allele code
a
b
c
d
1 2 3
Allele code
Last step: the Validation
‘Deloria’
‘Topaz’
‘Gala’
‘Braeburn’
1 2 3
Allele code
a
b
c
d
1 2 3
Allele code
Last step: the Validation
MAPS MASS
Md-PG13 kb upstream 10 kb downstream
Marker – Trait Pipeline
Markers
x
50%
50%
x
50%
50%
Development category
Development + ripening category
Full ripening category
CTRL
1-MCP
F L G MG B H PH
