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Project Cognoma OpenCon 2016 Washington, D.C. 11:15 AM on Sunday, November 13 Slides at slides.com/dhimmel/opencon-2016

Project Cognoma: engaging local meetups to build an open source cancer application - Daniel Himmelstein -OpenCon 2016

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Page 1: Project Cognoma: engaging local meetups to build an open source cancer application - Daniel Himmelstein -OpenCon 2016

Project CognomaOpenCon 2016Washington, D.C.

11:15 AM on Sunday, November 13

Slides at slides.com/dhimmel/opencon-2016

Page 2: Project Cognoma: engaging local meetups to build an open source cancer application - Daniel Himmelstein -OpenCon 2016

putting machine learning in thehands of cancer biologists

Cognoma Motto 1

Page 3: Project Cognoma: engaging local meetups to build an open source cancer application - Daniel Himmelstein -OpenCon 2016

CDKN2A DPY19L2 EDA2R GDF15 STK31 UBE2C

Andrew

Ben

Casey

Claire

Daniel

Greg

Jesse

Karin

machine learning

Predicting cancer mutations from gene expression

(using public domain TCGA data)

Page 4: Project Cognoma: engaging local meetups to build an open source cancer application - Daniel Himmelstein -OpenCon 2016

everyone learns something new

Cognoma Motto 2

Page 5: Project Cognoma: engaging local meetups to build an open source cancer application - Daniel Himmelstein -OpenCon 2016
Page 6: Project Cognoma: engaging local meetups to build an open source cancer application - Daniel Himmelstein -OpenCon 2016

github.com/cognoma

Page 7: Project Cognoma: engaging local meetups to build an open source cancer application - Daniel Himmelstein -OpenCon 2016

Pull requests model for contribution

see example

Page 8: Project Cognoma: engaging local meetups to build an open source cancer application - Daniel Himmelstein -OpenCon 2016

Contribution per user by

GitHub repository

Page 9: Project Cognoma: engaging local meetups to build an open source cancer application - Daniel Himmelstein -OpenCon 2016

cognoma.org(when released)

Page 10: Project Cognoma: engaging local meetups to build an open source cancer application - Daniel Himmelstein -OpenCon 2016
Page 11: Project Cognoma: engaging local meetups to build an open source cancer application - Daniel Himmelstein -OpenCon 2016
Page 12: Project Cognoma: engaging local meetups to build an open source cancer application - Daniel Himmelstein -OpenCon 2016