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The top documents tagged [cs262 lecture]
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CS262 Lecture 9, Win07, Batzoglou Gene Recognition
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CS262 Lecture 9, Win07, Batzoglou History of WGA 1982: -virus, 48,502 bp 1995: h-influenzae, 1 Mbp 2000: fly, 100 Mbp 2001 – present human (3Gbp), mouse
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CS262 Lecture 9, Win07, Batzoglou Fragment Assembly Given N reads… Where N ~ 30 million… We need to use a linear-time algorithm
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CS262 Lecture 17, Win07, Batzoglou Gene Regulation and Microarrays
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CS262 Lecture 11, Win07, Batzoglou Some Terminology insert a fragment that was incorporated in a circular genome, and can be copied (cloned) vector the
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DNA Sequencing. CS262 Lecture 9, Win07, Batzoglou DNA sequencing How we obtain the sequence of nucleotides of a species …ACGTGACTGAGGACCGTG CGACTGAGACTGACTGGGT
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CS262 Lecture 9, Win07, Batzoglou Phylogeny Tree Reconstruction 1 4 3 2 5 1 4 2 3 5
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DNA Sequencing. CS262 Lecture 9, Win07, Batzoglou Method to sequence longer regions cut many times at random (Shotgun) genomic segment Get one or two
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CS262 Lecture 11, Win06, Batzoglou Some new sequencing technologies
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CS262 Lecture 9, Win07, Batzoglou Real-world protein aligners MUSCLE High throughput One of the best in accuracy ProbCons High accuracy Reasonable
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Proteins, Pair HMMs, and Alignment. CS262 Lecture 8, Win06, Batzoglou A state model for alignment -AGGCTATCACCTGACCTCCAGGCCGA--TGCCC--- TAG-CTATCAC--GACCGC-GGTCGATTTGCCCGACC
218 views
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DNA Sequencing. CS262 Lecture 9, Win06, Batzoglou DNA Sequencing – gel electrophoresis 1.Start at primer(restriction site) 2.Grow DNA chain 3.Include
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