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CytoGenie knowledge bases Online Data Dabris DataStore Offline DVD archive User CDs Online Data Science DataStore Create, organize, preserve and find all of your work in a coherent energy- efficient environment GreenStation A science-oriented implementation CERF knowledge bases F A C S FacsXpert CERF My letters My manuscripts My grants My experiments My data My statististics FacsXpert CytoGenie Confidential

Green Station Overview Final

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Page 1: Green Station Overview   Final

CytoGenie knowledge bases

Online Data

Dabris DataStore

Offline DVD archive

User

CDs

Online Data

Science DataStore

Create, organize, preserve and find all of your work in a coherent energy-efficient

environment

GreenStationA science-oriented implementation

CERF knowledge bases F

ACS

FacsXpertCERFMy lettersMy manuscriptsMy grants

My experimentsMy dataMy statististics

FacsXpertCytoGenie

Confidential

Page 2: Green Station Overview   Final

Work green

Save a world of energy

GreenStation

Occupies a single desktop or computer rack.

Requires no special air conditioning.

Requires no specially constructed facility.

Manages itself. Needs little staff care.

Keeps your entire archive at hand. No travel required.

Keeps only the active part of your archive spinning.

Confidential

Page 3: Green Station Overview   Final

Do you know where your data are?

Do you know what was in your experiment?

Will you know next week — or in fifteen years?

Science DataStore

Indexed, tamper-proof storage of large data files

in a transparent self-managing on-line/off-line

archiveConfidential

Page 4: Green Station Overview   Final

A GreenStation science configuration

Sciene DataStore

RAID

User User User User User

DVD or BluRay Robot

Data collection instruments

Client

Client

Data Processing

Images

Statistics

Word processing

Inventory management

Instrument management

Protocols

CytoGenieCERF

Confidential

Page 5: Green Station Overview   Final

A record of flawless performance

Science DataStore has been running for over three years

in the Stanford Shared FACS Facility, serving over

400 users and collecting over10GB of datafrom 8 different instruments every week

It has not lost a single data bit

Science DataStore

Confidential

Page 6: Green Station Overview   Final

One-Click Archiving* Reliable energy-efficient data storage for FACS and

other data

Permanently store data right after collectionAutomatically attach protocol documents

Take less than a minute to check in Upload in the background

Free the instrumentNo downtime

Click. * after initial export

from DiVa

Science DataStore

Confidential

Page 7: Green Station Overview   Final

One-click compatibiity

Off-the-shelf installation for FACS and other flow cytometers

Custom installation for other data-intensive technologies

No limitation on the amount of data stored

No limitation on the number of users

No limitation on the number of instruments that can be used simultaneously

Science DataStore

Confidential

Page 8: Green Station Overview   Final

One-click safetyAutomatically maintain at least two copies of all data and associated records

Automatically index and manage on-line and off-line data storage

Automatically create, verify, index and label

BluRay or DVD disks for on-site/offsite data stores (archives)

CD or DVD disks for individual users researchers

Online Data

Dabris DataStore

Offline DVD archive

User

CDs

Online Data

Science DataStore

Science DataStore

Confidential

Page 9: Green Station Overview   Final

One-click compliant

Accepts input only from authorized users and in authorized formats

Signs and seals files in each submission and stores them in a tamper-proof format

Meets strict regulatory requirements (site options for which to use)

Online Data

Dabris DataStore

Offline DVD archive

User

CDs

Online Data

Science DataStore

Science DataStore

Confidential

Page 10: Green Station Overview   Final

Science DataStore confirmation email

Announces that the data submission is safely archived

Summarizes the archived items and their labels

Provides internet-accessible links for the items

• Download data and related information• Launch analyses• Send data access to collaborators

One-click friendlyScience DataStore

Confidential

Page 11: Green Station Overview   Final

One click anywhere

Science DataStore keeps a personal, password-protected index of your experiments online.

The Internet-accessible index shows all of the sample labels and other information stored for each experiment.

One click downloads the data files and accompanying information for an experiment, ready for analysis any time, anywhere.

Click to view summary or

download files.

Science DataStore

Confidential

Page 12: Green Station Overview   Final

CytoGenie knowledge bases

Online Data

Dabris DataStore

Offline DVD archive

User

CDs

Online Data

Science DataStore

Create, organize, preserve and findall of your work in one place

CERF knowledge bases F

ACS

FacsXpertCERFMy lettersMy manuscriptsMy grants

My experimentsMy dataMy statististics

FacsXpertCytoGenie

Work seamlessly with CytoGenie and CERF

Confidential

Page 13: Green Station Overview   Final

Computer Aided Design for experiments

ExpertsExperts enter instrument information about lasers, enter instrument information about lasers, filters, instruments, fluorochrome spectra, etc. filters, instruments, fluorochrome spectra, etc.

Investigators Investigators enter the subject, sample and other enter the subject, sample and other information necessary for individual experiments. information necessary for individual experiments.

CytoGenieCytoGenie helps the investigators compose stain helps the investigators compose stain sets, add necessary controls and make other sets, add necessary controls and make other experiment design choices to complete the protocol.experiment design choices to complete the protocol.

CytoGenieCytoGenie

Confidential

Page 14: Green Station Overview   Final

an intelligent software system

that knows what you have to do to plan and execute simple or Hi-D FACS experiments

…and helps you do it

CytoGenie™ and ScienceDataStore are distributed by ScienceXperts and Tomy Digital Biology

(Tokyo). CytoGenie Lab , the full CytoGenie version, is available free at ScienceXperts.com

Page 15: Green Station Overview   Final

Compose stain sets with CytoGenie

Confidential

Page 16: Green Station Overview   Final

CERFCERF

Protect precious intellectual assets.

Create them. Save them. Index them. Share them. Securely store and find them all in Science DataStore.

Organize and manage all computerized informationfrom MS Word and Excel documents to complex

multi-media databases, catalogs, and

presentations.

Award-winning as an Electronic Laboratory Notebook

Confidential

Page 17: Green Station Overview   Final

CERF CERF

Bring together and organize many different kinds of information.

Launch many different computer applications and track the output in the same environment.

Describe, index, and search for material in current use and in the Science DataStore archive.

Confidential

Page 18: Green Station Overview   Final

As a

lab noteboo

k

Confidential

Page 19: Green Station Overview   Final

DataStore - The energy-saving heart of the

system

CytoGenie - To design protocols for flow

cytometry

CERF - To manage just about everything else

GreenStation

Confidential

Page 20: Green Station Overview   Final

A suitable dedicated server (desktop size if fine)• We currently recommend the latest version of the Dell PowerEdge

configured to run Unix or Windows. A Mac server can also be used.

• RAID disk array configured to hold the amount of data needed online.

A CD/DVD or BlueRay robotic printer (e.g. from Primera)

Modern Internet browser with which to view the online index• Microsoft Internet Explorer (Version 6 or later), FireFox (Version 1.5 or

later), or similar.

• Minimum 1024 x 768 screen resolution.

A typical high-speed Local Area Network — 100 mb or better

Installation access on the instrument interface computer(s)• Windows (XP or later) or Mac (OS 10.4 or later).

Work with a minimum of equipment

Confidential

Page 21: Green Station Overview   Final

Science DataStoreThe energy-saving heart of the GreenStation

Currently implemented for flow cytometry

Readily adaptable for many other applications

Confidential