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TO THE CLOUD Javier de la Torre MOVING envisioning life BIODIVERSITY Change on the prtesentation due to interest Andrew W Hill Tim Robertson Friday, November 13, 2009

Moving Biodiversity to the Cloud @TDWG09

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Presentation done at TDWG 09 in Montpellier on the Wild Ideas session.

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Page 1: Moving Biodiversity to the Cloud @TDWG09

TO THE CLOUDJavier de la Torre

MOVING

envisioning life

BIODIVERSITY

Change on the prtesentation due to interest

Andrew W HillTim Robertson

Friday, November 13, 2009

Page 2: Moving Biodiversity to the Cloud @TDWG09

What is cloud computing?

Friday, November 13, 2009

Page 3: Moving Biodiversity to the Cloud @TDWG09

Data Processing

Scalable web applications

Friday, November 13, 2009

Page 4: Moving Biodiversity to the Cloud @TDWG09

Democratization

Friday, November 13, 2009

Page 5: Moving Biodiversity to the Cloud @TDWG09

Democratization

Friday, November 13, 2009

Page 6: Moving Biodiversity to the Cloud @TDWG09

Environment responsability

Friday, November 13, 2009

Page 7: Moving Biodiversity to the Cloud @TDWG09

Aquamaps

Friday, November 13, 2009

Page 8: Moving Biodiversity to the Cloud @TDWG09

Detecting novel influenzahttp://biodivertido.blogspot.com/

Friday, November 13, 2009

Page 9: Moving Biodiversity to the Cloud @TDWG09

Intersecting GBIF network data with the World Database on Protected Areas

Friday, November 13, 2009

Page 10: Moving Biodiversity to the Cloud @TDWG09

160M points intersect 150K polygons

Friday, November 13, 2009

Page 11: Moving Biodiversity to the Cloud @TDWG09

We need data,tools and methodologies

Data MethodologiesTools

Friday, November 13, 2009

Page 12: Moving Biodiversity to the Cloud @TDWG09

TDWG Cloud Computing beerSession

Friday, November 13, 2009

Page 13: Moving Biodiversity to the Cloud @TDWG09

1) Data Sets on the Cloud

GBIF species occurrence

BHL text data

BHL aging data

IUCN range maps

IUCN species status

EOL content

BOLD

ALA

TreeBASE

WDPA

MorphBank

PESI

AntBase

Friday, November 13, 2009

Page 14: Moving Biodiversity to the Cloud @TDWG09

Public Data Sets on AWS

Friday, November 13, 2009

Page 15: Moving Biodiversity to the Cloud @TDWG09

OpenModellerMaxentHadoopDisco

HBase/HTableVoldemort

BlastReduceClustalRAxMLGDAL

PyCogentClustr

HIT Harvester

2) Tools

AMQPMrBayesPaup*MuscleMAFFT

ImageMagickGraphViz

SAMTaxonFinder

ECAT Name ParserTesaracGeoCR

ABCD Parse

Friday, November 13, 2009

Page 16: Moving Biodiversity to the Cloud @TDWG09

Biolinux

Friday, November 13, 2009

Page 17: Moving Biodiversity to the Cloud @TDWG09

Methodologies

Friday, November 13, 2009

Page 18: Moving Biodiversity to the Cloud @TDWG09

Organization

Friday, November 13, 2009