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Scaling-Up the BIRN. “Building on the BIRN” Workshop National Institutes of Health Bethesda, MD March 22, 2004. Dr. Larry Smarr Director, California Institute for Telecommunications and Information Technologies Harry E. Gruber Professor, Dept. of Computer Science and Engineering - PowerPoint PPT Presentation
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Scaling-Up the BIRN
“Building on the BIRN” Workshop
National Institutes of Health
Bethesda, MD
March 22, 2004
Dr. Larry Smarr
Director, California Institute for Telecommunications and Information Technologies
Harry E. Gruber Professor,
Dept. of Computer Science and Engineering
Jacobs School of Engineering, UCSD
BIRN is a BISTI Leadership Project for the National Institutes of Health
• Biomedical Information Science and Technology Initiative – BISTI Report to NIH Director: June 1999
• Interdisciplinary Teams– Collaborating to Develop Mathematical Models, Write Software and
Adapt Systems• Cooperation with Computer Science in:
– Algorithm, Software, Database and System Development• Improved Access to Computing
– Shared PC Clusters in Biomedical Laboratories to High-Performance Systems in National Centers
• Workforce Development to Encompasses Every Level– Technician to Ph.D.
• New Centers for Research and Teaching – People Competent in Biomedicine and Computation & Mathematics
www.nih.gov/about/director/060399.htm
Botstein-Smarr Report June 1999
Cal-(IT)2--An Integrated Approach the Future of the Internet
www.calit2.net
220 UC San Diego & UC Irvine FacultyWorking in Multidisciplinary Teams
With Students, Industry, and the Community
BIRN Driven
BIRN Cyberinfrastrucure Must Evolve Riding Multiple Exponentials
Scientific American, January 2001
Number of Years0 1 2 3 4 5
Pe
rfo
rma
nc
e p
er
Do
llar
Sp
en
t
Data Storage(bits per square inch)
(Doubling time 12 Months)
Optical Fiber(bits per second)
(Doubling time 9 Months)
Silicon Computer Chips(Number of Transistors)
(Doubling time 18 Months)
Data Intensive e-Science Will Require Common Cross-Agency Cyberinfrastructure
The OptIPuter Project – Removing Bandwidth as an Obstacle In Data Intensive Sciences
• NSF Large Information Technology Research Proposal– Cal-(IT)2 and UIC Lead Campuses—Larry Smarr PI
– Co-PIs Mark Ellisman, Phil Papadopoulos, Tom DeFanti, Jason Leigh – USC, SDSU, NW, Texas A&M, Univ. Amsterdam Partnering Campuses
• Industrial Partners– IBM, Sun, Telcordia/SAIC, Chiaro Networks, Calient, Glimmerglass
• $13.5 Million Over Five Years• Optical IP Streams From Lab Clusters to Large Data Objects NIH Biomedical Informatics NSF EarthScope
and ORION
http://ncmir.ucsd.edu/gallery.html
siovizcenter.ucsd.edu/library/gallery/shoot1/index.shtml
Research Network
What is the OptIPuter?Next Generation Cyberinfrastructure
• Applications Drivers Interactive Large Data Objects
• OptIPuter Nodes Scalable PC Cluster LambdaGrid “Browser”
• IP over Lambda Connectivity Predictable Network
• Open Source LambdaGrid Middleware Can Reserve Network
• Data Retrieval and Mining Global Virtual Disk Drives
• High Def Visualization, Collaboration “UltraReality TV”
See Nov 2003 CACM For Articles on OptIPuter Technologies
BIRN
OptIPuter Driver: On-Line Microscopes CreatingVery Large Biological Montage Images
• 2-Photon Laser Confocal Microscope– High Speed On-line
Capability
• Montage Image Sizes Exceed 16x Highest Resolution Monitors– ~150 Million Pixels!
• Use Graphics Cluster with Multiple GigEs to Drive Tiled Displays
Source: David Lee, NCMIR, UCSD
IBM 9M Pixels
Ultra-Resolution Displays Driven by Graphics Clusters Scaling to 100 Million Pixels
• JuxtaView (UIC EVL) on Tiled LCD GeoWall2– Digital Montage Viewer – 8000x3600 Pixel
Resolution~30M Pixels Now– Building a 75M Pixel Wall
• Display Is Powered By: – 16 PCs with Graphics Cards– 2 Gigabit Networking per PC
• Linked by Dedicated Multi-Gigabit Light Pipes– Research on Adding Stereo
HD Collaboration
Source: Jason Leigh, EVL, UIC; USGS EROS
Brain Microscopy
Exploring High Performance LambdaGrid Collaboration
Falko Kuester, Cal-(IT)2@UCI, Collaboration Laboratory with Smart Boards and
Optically Connected Large ScreensWith UCI Potkin and UCSD Ellisman
BIRN Laboratories
Cyberinfrastructure in Design Phase--
Fiber Optic CablesSatelliteWireless
OptIPuter Driver: Gigabit Fibers on the Ocean FloorNSF’s ORION-Ocean Research Interactive Ocean Network
www.neptune.washington.edu
Based on BIRN Cyberinfrastructure
½ Mile
SIO
SDSC
CRCA
Phys. Sci -Keck
SOM
JSOE Preuss
6th College
SDSCAnnex
Node M
Earth Sciences
SDSC
Medicine
Engineering High School
To CENIC
Collocation
Source: Phil Papadopoulos, SDSC; Greg Hidley, Cal-(IT)2
The UCSD OptIPuter DeploymentUCSD is Prototyping
a Campus-Scale OptIPuter
SDSC Annex
JuniperT320
0.320 TbpsBackplaneBandwidth
20X
ChiaroEstara
6.4 TbpsBackplaneBandwidth
Dedicated Fibers Between Sites Link
Linux Clusters
NCMIR and BIRN CC
14
The 30-Year Old TCP/IP Model of Sharing the Internet Has Its Penalties
Shared Internet2 Speed Limit~50 Mbps
On a 10,000 MbpsBackbone!
(½ of 1% Efficiency)
Similar Results for BIRN
The OptIPuter Will Become aNational-Scale Collaboratory in 2004
Source: Tom West, CEO, NLR
Chicago OptIPuter
StarLightNU, UIC
SoCalOptIPuter
USC, UCI UCSD, SDSU
“National Lambda Rail” PartnershipServes Very High-End Experimental and Research Applications
4 x 10Gb Wavelengths Initially Capable of 40 x 10Gb wavelengths at Buildout
NASA Ames
NASA Goddard
NEPTUNE
In Discussion
Paves the Wayfor “BIRN II”
OptIPuter Infrastructure Is International: Global Lambda Integrated Facility: GLIF
DWDM SURFnet
10 Gbit/s
SURFnet10 Gbit/s
SURFnet10 Gbit/s
IEEAF10 Gbit/s
DwingelooASTRON/JIVE
DwingelooASTRON/JIVE
PragueCzechLight
PragueCzechLight
2.5 Gbit/s
NSF10 Gbit/s
StockholmNorthernLight
StockholmNorthernLight
CA*net4
2.5 Gbit/s
New YorkMANLANNew YorkMANLAN
TokyoWIDETokyoWIDE
10 Gbit/s
10 Gbit/s
10 Gbit/s
10 Gbit/sIEEAF
10 Gbit/s
10 Gbit/s
10 Gbit/s
2.5 Gbit/s
2.5 Gbit/s
TokyoAPANTokyoAPAN
AmsterdamNetherLightAmsterdamNetherLight
GenevaCERN
GenevaCERN
LondonUKLightLondonUKLight
ChicagoStarLightChicagoStarLight
Source: Kees Neggers, SURFnet
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