SIXUE CHEN - UF Biology - University of Florida

C.V., Sixue Chen, Ph.D.

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SIXUE CHEN

University of Florida Term Professor Professor, Department of Biology; Genetics Institute;

Plant Molecular and Cellular Biology Program; Director, Proteomics Facility, Interdisciplinary Center for

Biotechnology Research (ICBR); UNIVERSITY OF FLORIDA

Phone: (352) 273 8330; Fax: (352) 273 8284 E-mail: [email protected]

Websites: http://people.clas.ufl.edu/schen/ http://www.moleculardetective.org http://proteomics.center.ufl.edu

EDUCATIONAL BACKGROUND 1993 1996 Ph. D., Shanghai Institute of Plant Physiology and East China Normal University, China (joint-training program) Dissertation: Plant plasma membrane transport systems and osmotic shock signal transduction in Dunaliella salina. 1991 1993 M. S., East China Normal University, China Dissertation: Molecular basis of the recognition and transformation of plant cells by Agrobacterium rhizogenes. 1987 1991 B. S., Harbin Normal University, China Thesis Title: The response of maize seedlings to low temperature.

PRESENT POSITIONS 2016 Present Professor with tenure, University of Florida Research Interests: 1) Investigating molecular networks regulating glucosinolate

metabolism and pathogen infection.

2) Functional omics of guard cell hormone, CO2 and pathogen signaling.

2008 Present Director of Proteomics Facility, University of Florida Research Interests: 1) Developing technology and analytical tools for analyzing

low abundance proteins and modified proteins.

2) Establishing targeted metabolomics tools and services.


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PREVIOUS POSITIONS 2011 2016 Associate Professor with tenure, University of Florida Research Interests: 1) Elucidating molecular networks regulating glucosinolate

metabolism using proteomics and metabolomics.

2) Characterizing molecular switches in pathogen infection.

3) Redox proteomics and metabolomics of guard cell hormone and CO2 signaling.

2014 Spring Semester Visiting Associate Professor, The Samuel Roberts Noble

Foundation, Inc., USA (on sabbatical) Research Interests: Untargeted plant metabolomics technologies and data analysis 2013 Fall Semester Visiting Associate Professor, RIKEN Center for Renewable

Resource Science, Yokohama, Japan (on sabbatical) Research Interests: Targeted and untargeted plant metabolomics technologies 2006 2011 Assistant Professor, University of Florida Research Interests: 1) Elucidating molecular networks regulating glucosinolate

metabolism using proteomics and metabolomics.

2) Redox proteomics and metabolomics of guard cell ABA and methyljasmonate signaling. 2003 2005 Director, Proteomics and Mass Spectrometry Facility, Donald Danforth Plant Science Center, St. Louis, MO. (Supervisor: Dr. Roger N. Beachy) Research & Service: 1) Developing and implementing proteomics and mass spectrometry technologies in biological research.

2) Providing analytical services to internal and external clients. 3) Supervising students and training scientists on proteomics.

2001 2003 Research Associate, University of Pennsylvania, Philadelphia, PA, USA. (Supervisor: Dr. Philip A. Rea) Research Projects: 1) Defining vacuolar proteomics of yeasts and plants.

2) Functional characterization of ABC transporters. 3) Participating in international membrane transporter consortium microarray initiative.

1998 2001 Assistant Research Professor, Plant Biochemistry Laboratory, The Royal Veterinary and Agricultural University, Denmark. (Supervisor: Dr. Barbara A. Halkier) Research Projects: 1) Characterization of genes in glucosinolate biosynthesis.

2) Metabolic engineering of glucosinolate profiles. 1997 1998 Alexander-von-Humboldt Fellow, Universitaet Freiburg, Freiburg, Germany. (Supervisor: Dr. Peter Schopfer) Research Project: Characterizing hydroxyl radical production in plant growth.


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AREAS OF EXPERTISE (Key words) Stomatal Disease Triangle, Specialized Metabolism, Functional Genomics, Mass Spectrometry.

HONORS AND AWARDS 2019 University Term Professorship Award, University of Florida 2019 Faculty Travel Award, University of Florida 2019 Graduate Education Diversity Champion, University of Florida 2018 Nominated for Graduate Mentoring Award, University of Florida. 2018 Travel Award, College of Liberal Arts & Sciences, University of Florida 2015 Colonel Allen R. and Margret G. Crow Term Professor, University of Florida 2013 Travel Award, College of Liberal Arts & Sciences, University of Florida, U.S.A 2011 Excellence Award for Assistant Professor, University of Florida, U.S.A 2011 UF-HHMI Science for Life Distinguished Mentor Award, University of Florida 2010 University of Florida Teacher of the Year (University of Florida's highest

faculty honor for teaching excellence) 2009 CAREER Award, National Science Foundation, U.S.A 2009 Travel Award, College of Liberal Arts & Sciences, University of Florida 2005 , International listing, U.S.A 1997 Alexander-von-Humboldt Award, Universitaet der Freiburg, Germany. 1996 Excellent Doctoral Graduate, Shanghai Education Bureau, China. 1996 Outstanding Graduate Student, East China Normal University, China. 1993 Science and Technology Contest, 3rd Award, East China Normal University. 1993 Graduate Student Fellowship, Xiangjie Foundation, Taiwan. 1992 Zhanming Scholarship, Zhanming Xu Foundation, Hongkong.

SPECIAL TRAINING Instrument and technology:

2021 timsTOF system MALDI imaging training, Bruker Scientific Inc., USA.

2020 nanflow UPLC and timsTOF system proteomics training, Bruker Scientific Inc., USA.

2020 EvoSep LC installation and operation training, EvoSep Inc., Denmark.

2020 UPLC Elute and timsTOF system metabolomics and lipidomics training, Bruker Scientific Inc., USA.

2018 Nanoflow UPLC1200 and UPLC Vanquish-Altis QQQ MS system training, Thermo Scientific Inc., USA.

2017 Orbitrap Fusiong Tribrid LC-MS system training, Thermo Scientific, USA.

2016 UPLC1290-QQQ6495 MS system training, Agilent Inc., USA.

2016 Ultimate 3000 nanoflow UPLC training, Thermo Scientific Inc., USA.

2015 Q-Exactive Plus Orbitrap LC-MS system training, Thermo Scientific, USA.

2012 Proteomics Workshop-Laser Microdissection to Mass Spectrometry, Association of Biomolecular Resource Facilities, Orlando, Florida, USA.


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2012 TriVersa NanoMate chip-based nanoelectrospray ionization technology training, Advion Inc., USA.

2011 LTQ Orbitrap LC-MS/MS system operator training, Thermo Scientific, USA.

2010 Nanoflex Chip nanoLC training, Eksigent, USA.

2009 QSTAR Elite nanoflow UPLC MS/MS training, Applied Biosystems, USA.

2007 4700 MALDI-TOF-TOF MS operator training, Applied Biosystems, USA.

2006

2005 QTRAP 4000 LC MS/MS operator training, Applied Biosystems, USA.

2004 Practical LC-MS, American Society for Mass Spectrometry, USA.

2004 Progenesis 1D and 2D gel image analysis, Non-linear Dynamics, UK.

2003 QSTAR XL MALDI/LC MS/MS operator training, Applied Biosystems, USA.

2003 MALDI-TOF Voyager Workstation and Proteomic Solutions 1 System, Applied Biosystems, USA.

2001 MassPrep Robotic Liquid Handling System and Micromass MALDI- TOF Mass Spectrometer, Micromass, USA.

2001 PDQuest 2D gel image analysis, BioRad, USA.

1998 Bioinformatics courses (DNA sequence and phylogenetic analysis), Biobase Center, University of Aarhus, Denmark.

Administrative/Leadership:

2021 Maintaining a Safe and Respectful Campus: Identifying and Preventing Sexual and Gender Based Violence, Harassment and Discrimination (GET803v_OLT).

2021 Managing bias (RJE101_OLT), University of Florida, USA.

2021 Hazardous waste management (EHS809), University of Florida, USA.

2020 Compliance and Ethics Training (OOC101), University of Florida, USA 2020 FERPA for Faculty Training (PRV803), University of Florida, USA 2020 Information Security Training (ITT102), University of Florida, USA 2020 At-Risk for Faculty & Staff Kognito Training, University of Florida, USA 2019 360 leadership training, University of Florida, USA 2018 The Family Educational Rights and Privacy Act (FERPA) Basics and FERPA

for Faculty, University of Florida 2018 Compliance: A Collaboration for Success, University of Florida, USA

2018 Planning/Priorities/Delegation (UF_SCS100_ILT), University of Florida, USA

2017 Leading a Team (UF_SCS075_ILT), University of Florida, USA.

2017 Communication for Managers ( ), University of Florida, USA.

2016 Preventing Harassment (1.2) (GET802), University of Florida, USA.

2015 Financial Conflict of Interest (Course DSR810), University of Florida, USA.

2014 Faculty Search Committee (Course PVO800), University of Florida, USA

2014 Effort Fundamentals (Course RSH220), University of Florida, USA.

2013 Cost Principles (Course RSH260), University of Florida, USA.


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2012 Time & Labor Approvers 9.1 (Course PST916), University of Florida, USA.

2012 Quality Customer Service (Course CCA010), University of Florida, USA.

2012 Life Sciences Responsible Conduct of Research Course, Collaborative Institutional Training Initiative (CITI).

2012 At-Risk Gatekeeper Faculty Training (for identifying and referring students in distress), UF Counseling and Wellness Center, USA.

2011 Active learning and scientific teaching workshop, Dr. Randolph M. Nesse, University of Michigan, USA.

2010 Taking Charge of Change, Course SCS080, section 4558, UF Training and Organizational Development, Office of Human Resource Services, USA

2010 Making Meetings Work, Course SCS080, section 4558, UF Training and Organizational Development, Office of Human Resource Services, USA

2009 Management Principles and Philosophy training, UF Training and Organizational Development, Office of Human Resource Services, USA

2008 Search Committee Tutorial Certificate, Faculty Development Workshop, University of Florida, USA.

2008

2006 Faculty Recruitment and Diversity Workshop, University of Florida, USA.

2006 Faculty Mentoring Workshop, Southeast Alliance for Graduate Education and the Prefessoriate, USA.

2005 VISTA Teaching Workshop, Education Department, University of Florida

1999 Academic English for Teaching and Scientific Writing, the Language Center of Copenhagen Business School, Denmark.

Foreign Languages: English (fluent), German (intermediate, Goethe Institute, Germany), Danish (level 16, Studienskole, Denmark), Japanese (basics).

GRANTS AND SUPPORT 2020 - 2023 National Science Foundation (NSF), PI, Metabolomics of stomatal

immunity in the disease triangle $425,000.

2020 - 2023 United States Department of Agriculture (USDA), PI, Metabolomics of stomatal immunity in the disease triangle $425,000.

2020 - 2023 United States Department of Agriculture (USDA), co-PI, Protein phosphorylation and poly(ADP-ribosyl)ation in cotton drought stress$500,000.

2019 - 2022 The Craig H Neilsen Foundation, co-PI, Novel and potent compounds that promote axon growth. $600,000.


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2019 - 2021 University of Florida Research Seed Fund, PI, Identification and functional characterization of novel telomerase-activating factors $85,000.

2018 - 2019 National Science Foundation (NSF), PI, Role of lipids as signaling molecules in mediating stomatal guard cell immunity in Arabidopsis guard cells $91,288.

2018 - 2023 National Institute of Health (NIH), co-PI, Mechanism and treatment of cardiac and skeletal muscular dysfunction in Barth syndrome$2,238,730.

2017 - 2019 University of Florida Genetics Institute (UFGI), PI, Acquisition of an Amersham Imager 600 to modernize Western blot imaging technology at UFGI $25,990.

2015 - 2019 United States Department of Agriculture (USDA), co-PI, Ubiquitin ligase-mediated drought tolerance in rice and maize $490,000.

2015 - 2019 National Institute of Health (NIH), co-PI, Novel T1D risk variants from genomic analyses in high risk families $1,350,000.

2015 2016 National Science Foundation (NSF), co-PI, Conference: The 20th Penn State Plant Biology Symposium: Plant Stress-Omics in a Changing Climate $10,000.00

2014 - 2017 National Science Foundation (NSF), PI, Redox Regulation of Protein Kinase Functions in Guard Cell Signaling $324,885 x2 = 649,770.

2014- Egyptian Cultural and Educational Bureau), PI, Unrestricted $15,800.

2012 - 2016 National Science Foundation (NSF), PI, Metabolomic Characterization of Red Light and CO2 Signaling in Guard Cells and Mesophyll Cells$1,461,376. Project Number: 1158000.

2012 - 2014 National Science Foundation (NSF) RET, PI, Acquisition of a Portable Mass Spectrometer for High Schools. $30,000. Project Number: 1261461.

2011 - 2015 National Science Foundation (NSF), ColIaborator, ABI Development: Representation, Visualization, and Modeling of Signaling Pathways in Higher Plants $1,057,337. Project Number: 1062472.

2011 - 2014 University of Florida Research Opportunity Seed Fund Award, PI, Proteomic Analysis of Plant Polyploidy $80,000. Project Number:

00095031.

2011 Agilent Technologies Inc., PI, Agilent Technologies HPLC Equipment Grant Award $9,096.90.

2009 - 2014 National Science Foundation (NSF), PI, Understanding Molecular Networks Controlling Plant Glucosinolate Metabolism$682,609. Project Number: MCB 0845162.


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2009 - 2012 Morris Animal Foundation, co-PI, Diagnosing nclusion Body Disease $71,280. Project Number: D08ZO-008.

2009 - 2010 National Institute of Health (NIH), PI, Performance UPLC-QSTAR Elite Proteomics Platform at University of

$436,048. Project: 1S10RR025418-1.

2009 - 2011 National Science Foundation (NSF), PI, and Metabolomics Regulatory Mechanisms Underlying Guard Cell ABA Signal Transduction $11,620. Project Number: MCB 0945430.

2009 University of Florida, PI, Workshop and Symposium-Proteomic, Redox and Metabolic Networks$3,000.

2008 - 2012 National Science Foundation (NSF), PI, Redox and Metabolomics Regulatory Mechanisms Underlying Guard Cell ABA Signal Transduction$528,021. Project Number: MCB 0818051.

2010 - 2014 Florida Citrus Production Research Council, co-PI, Using Small Molecules Which Are Antimicrobial Against Ca. L. asiaticus or Disrupt Psyllid Transmission of the Pathogen $153,599.

2009 - 2010 University of Florida the Singer Biology Fund, co-PI$2,670.

2008 - 2011 United States Department of Agriculture (USDA), co-PI with others, d Metabolomics (GEM)

$229,500. Project No. 2008-38420-18736.

TEACHING RESPONSIBILITIES AND EXPERIENCE

Spring 2021 Genomics and Bioinformatics (GMS 6231), University of Florida.

Functional Genomics Applications in Pharmacology and Toxicology course.


Fall 2020 Integrated Principles of Biology I (BSC 2010), University of Florida.

Fall 2019 Guest lecture on Proteomics and Metabolomics Applications to Dr. Adam C.N. Wong graduate course titled "Omics and Entomology/Nematology research".

Functional Genomics Applications in Pharmacology and Toxicology course.


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Fall 2018 Integrated Principles of Biology I (BSC 2010), University of Florida.


Fall 2017 Proteomics-Theory and Practice (Bot6508C), University of Florida.


Spring 2017 Guest lecture on Functional Genomics Applications in Pharmacology and Toxicology course.

Spring 2017 Guest lecture on Omics Research Methods to Dr. Kathryn (Kitty) WilliamsISC 3523C, Research Methods for UFTeach class.

Spring 2017 Guest lecture, Parade of Faculty-Graduate Student Seminar, Biology Dept.

Spring 2016 Integrated Principles of Biology I (BSC 2010), University of Florida.



Spring 2016 Guest lecture for Parade of Faculty-Graduate Student Seminar, Biology Department


Fall 2015 Guest lecture on Neurodegenerative Research: From Bench-to-Bedside Dr. Sylvain Doré GMS6029 course.


Spring 2015 Toxicogenomics class.


Spring 2015 Guest lecture for Parade of Faculty-Graduate Student Seminar, Biology Department

Fall 2014 Integrated Principles of Biology II (BSC 2011), University of Florida.






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Spring 2011 Biology Colloquium (BSC2930), University of Florida.



Spring 2010 Intermediate Plant Physiology (Bot 5505), University of Florida.

Spring 2010 Plant Physiology/Molecular Biology (Bot 3503), University of Florida.

Spring 2010 Plant Physiology Lab (Bot 3503L), University of Florida.







Fall 2008 Cells, Organisms, and Genetics (BSC2007), University of Florida.









Fall 2006 Graduate Student Seminar (Bot 6936), University of Florida.



Fall 2005 Introduction to Bioinformatics and Genomics (BCH-G628), St. Louis

University.

Spring 2005 Plant Cells and Proteomics (Bio3052), Washington University, St. Louis. Spring 2004 Plant Cells and Proteomics (Bio3052), Washington University, St. Louis. Fall 2002 Proteomics (Bio571, assistant), University of Pennsylvania.

Fall 1997 Advanced Plant Physiology (assistant), Universitaet Freiburg, Germany.

Spring 1993 Plant Physiology and Molecular Biology, East China Normal University.

Spring 1991 General Biology (pedagogy), Harbin No. 3 Senior High School, China.


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Overall student evaluations of teaching at UF (The highest score is 5) Course Semester Faculty

Mean Department Mean

College Mean

BSC2930: Biology Forum (2 credit) Spring 2011 Section 3709

4.79 4.38 4.24

Section 6509 4.57 4.38 4.24 BSC2010: Integrated Principles of Biology I (3 credits)

Fall 2018 4.46 4.24 4.28 Section 6562 Section 6563 4.30 4.24 4.28 Section 6564 4.46 4.24 4.28

BSC2010: Integrated Principles of Biology I (3 credits)

Spring 2016 Section 0483

4.72 4.14 4.24

Section 0485 4.81 4.14 4.24 Section 0484 4.69 4.14 4.24

BSC2011: Integrated Principles of Biology II (3 credits)

Fall 2014, Section 0575

4.93 4.33 4.18

Section 0576 4.82 4.33 4.18 Section 6992 4.92 4.06 3.97



4.86 4.09 4.08

Section 0576 4.93 4.09 4.08 Section 6992 4.89 4.09 4.08



4.70 4.14 4.24

Section 0576 4.79 4.14 4.24 Section 6992 4.75 4.14 4.24

BOT6508C: Proteomics: Theory & Practice (3 credits)

Fall 2015 4.80 4.46 4.22 Fall 2011 4.82 4.47 4.14 Fall 2009 4.82 4.41 4.26 Fall 2007 5.00 4.43 4.18

BOT3503: Plant Physiology /Molecular Biology (3 credits) (50% responsibility)

Spring 2010 4.56 4.16 4.23 Spring 2009 4.91 4.20 4.20 Spring 2008 4.68 4.26 4.20 Spring 2007 4.65 4.24 4.16 Spring 2006 4.50 4.02 4.17

BOT3503LAB: Plant Physiology /Molecular Biology (2 credits) (50% responsibility)

Spring 2008 4.77 4.26 4.20

Spring 2006 4.44 4.02 4.17

GMS6231: Genomics and Bioinformatics (3 credits) (33% responsibility)

Spring 2019 4.72 4.57 4.50 Spring 2018 4.85 4.25 4.38 Spring 2017 4.74 4.65 4.59 Spring 2016 4.85 4.70 4.47 Spring 2015 4.22 4.63 4.37


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Spring 2014 4.50 4.40 4.37 Spring 2013 4.54 4.33 4.39 Spring 2012 4.80 4.13 4.31 Spring 2011 5.00 4.25 4.23 Spring 2010 4.85 4.14 4.23 Spring 2009 4.70 4.20 4.20 Spring 2008 4.70 4.26 4.20 Spring 2007 4.00 4.24 4.16

BSC2007: Cells, Organisms, and Genetics (3 credits)

Fall 2008 4.25 4.09 4.20

STUDENT MENTORING Present Students Postdoctoral Associates and Visiting Scientists

2018 Present Dr. Wei Zhu (Postdoc, Ph.D., Zhejiang University) 2015 Present Dr. Manas Biswal (Postdoctoral Associate, Ph.D.,

Florida Atlantic University, USA)

Graduate Students 2021 Mingxi Zhou (Rotation student) 2020 Present Nye Lott (Advisor) 2020 Present Mu Yu (Committee member) 2020 Present Fiona Michelle Harris (Committee member) 2019 Present Qingyuan Xiang (Advisor) 2019 Present Bowen Tan (Advisor) 2019 Present Qi Hu (Committee member) 2019 Present Paul Wassel III (Committee member) 2019 Present Veronica Perez (Committee member) 2019 Present Hui Liu (Committee member) 2019 Present Ricardo Couto-Rodriguez (Committee member) 2019 Present Yangyang Li (co-Advisor) 2019 Present Xuemei Zhang (co-Advisor) 2018 Present Lan-yen Chang (Committee member) 2017 Present Shweta Chhajed (Advisor) 2017 Present Chuwei Lin (Advisor) 2017 Present Zachary Adams (Committee member) 2017 Present Scott D. Cinel (Committee member) 2016 Present Lisa David (Advisor) 2016 Present Peiqi Zhang (Committee member) 2016 Present Anna E Gioseffi (Committee member)

Undergraduate Students

2021 Present Gedrick Mangual (University of Florida)


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2021 Present Lisa Guan (University of Florida)

2020 Present Kyla P Doubek (University of Florida)

2020 Present Daniel Dufresne (Florida International University)

2019 Present Lin L Lu (University of Florida)

Administrative/Technical Assistant 2010 Present Ruth Davenport (UFID: 71961820)

2012 2019 Vitrell L. McNair Sherif

Other Personnel (Proteomics Core) 2016 Present Leo Zhu, Technician

2016 Present Ning Zhu, Biological Scientist

2010 Present Dr. Jin Koh, Scientific Lab Manager

2008 Present Ran Zheng, Chemist

Past Students Postdoctoral Associates and Visiting Scientists

2018 2020 Dr. Wei Zhu (Postdoc, Ph.D., Zhejiang University) 2015 2020 Dr. Manas Biswal (Postdoctoral Associate, Ph.D., Florida

Atlantic University, USA) 2019 2020 Dr. Dan Zhu (Prof., Ph.D., Qingdao Agriculture Univ) 2012 2019 Dr. Mi-Jeong Yoo (Postdoc, Ph.D., University of Florida) 2018 Dr. Li Jing (Visiting Professor, Northeast Agricultural

University, China) 2016 2017 Dr. Tong Zhang (Postdoc, Ph.D., Univ. of Florida) 2016 2017 Dr. Li Meng (Visiting Associate Professor, Heilongjiang

University, China) 2016 Summer Dr. Dr. Iris Payan (Hollywood Hills High School, FL,

USA) 2016 Summer Donely Santiago (Mandarin High School, FL, USA) 2013 2016 Dr. Biswapriya B. Misra (Postdoc, Ph.D., Indian Institute

of Technology (IIT) Kharagpur, India) 2015 2016 Dr. Bing Yu (Visiting Associate Professor, Heilongjiang

University, China) 2014 2016 Islam Mostafa Abdo Bayom (Visiting Scholar, Faculty of

Pharmacy, Zagazig University, Zagazig, Egypt) 2013 2016 Dr. Mengmeng Zhu (visiting postdoc from Assmann lab) 2011 2013 Dr. Mengmeng Zhu (Ph.D. from Chen lab., Univ Florida) 2012 2013 Dr. Wei Ji (Associate Professor from Northeast Agricultural University, Harbin, China) 2011 2013 Dr. Roberto Murgas Torrazza (Neonatal-Perinatal Fellow, Department of Pediatrics-Neonatology Scholarship Oversight Committee)


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2011 2012 Dr. Shaojun Dai (Professor at Northeast Forestry University, Harbin, China)

2010 2011 Dr. Chris Young (Scholarship Oversight Committee) 2009 2012 Dr. Xiaofen Jin (visiting postdoc from Assmann lab) 2009 2010 Dr. Xiufeng Yan (Professor at Northeast Forestry

University, Harbin, China) 2009 2010 Dr. Liqun Chen (Professor at China Agricultural

University, Beijing, China) 2008 2009 Dr. Shaojun Dai (Professor at Northeast Forestry

University, Harbin, China) 2008 2009 Jing Gao (Graduated from Northeast Forestry Univ.)

2006 2008 Sophie Alvarez (postdoctoral associate, Assistant Manager at Danforth Plant Science Center)

2003 2005 Victor Asirvathum (Research Coordinator at South Florida University)

2002 2003 Prem N. Jagadev (Professor at Orissa University of Agriculture and Technology, India

Graduate Students 2019 2020 Hope Hersh (Rotation student) 2019 2020 Nye Lott (Rotation student) 2018 2020 Jianing Kang (co-Advisor, graduated in Summer 2020) 2017 2020 Tautvydas Shuipys (Committee member, graduated in

Fall 2020) 2017 2020 Qijie Guan (co-Advisor, graduated in Summer 2020) 2015 2020 Shengchen Shan (Committee member, graduated in

Summer 2020) 2015 2020 Gengnan Li (Committee member, graduated in Spring

2020) 2016 2019 Ann C. Bernert (Committee member, graduated in Fall

2019) 2016 2019 Kiesha Wilson (Committee member, graduated in

Summer 2019) 2016 Michael Riley (advisor, rotation) 2016 2018 Wenwen Kong (co-advisor, graduated in Summer 2018) 2015 2018 Lei Pan (Committee member, graduated in Summer

2018) 2015 2018 Shamsunnaher Shamsunnaher (Committee member,

graduated in Fall 2018) 2014 2018 Dantuluri Swathi (Committee member, graduated in Fall

2018) 2013 2018 Peng Liu (Committee member, graduated in Fall 2018) 2014 2018 Sheldon Lawrence (advisor, graduated in Summer 2018) 2014 2018 Sungmin Hwang (Committee member, graduated in

Spring 2018)


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2014 2017 Guanqiao Feng (Committee member, graduated in December 2017)

2014 2017 Pauline Fontaine (Committee member, graduated in Fall 2017)

2014 2016 Tianyi Ma (co-advisor, graduated in spring 2017) 2014 2016 Zepeng Yin (co-advisor, graduated in summer 2016) 2012 2015 Lihong Liu (co-advisor, graduated in summer 2015) 2013 2017 Lana McMillan (Committee member, graduated in

December 2017) 2013 Sheldon Lawrence (advisor, rotation) 2013 2015 Saul Sotomayor Leyton (Committee member, graduated

in Fall 2015) 2013 2015 Becky Lazensky (Committee member, graduated in

summer 2015) 2012 2015 Samiksha Prasad (Committee member, graduated in

Fall 2015) 2012 2016 Fnu Samiksha (Committee member, graduated in Spring 2016) 2012 2016 Kelly Balmant (advisor, graduated in Summer 2016) 2012 2016 Sisi Geng (advisor, graduated in Summer 2016) 2012 2016 Amanda Patrick (Committee member, graduated in Summer 2016) 2011 2016 Lauren Douma (Committee member, graduated in winter

2016) 2010 2016 Andres Sandoval (committee member, graduated in

spring 2016) 2011 2016 Tong Zhang (advisor, graduated in Spring 2016) 2011 2015 Elton Carvalho Goncalves (Committee member,

graduated in Fall 2015) 2011 2014 Jason Ferrante (Committee member, graduated in Fall

2014) 2011 2014 Candice Lavelle (Committee member, graduated in Fall

2014) 2011 2014 Nathaniel L. Hepowit (Committee member, graduated in

Fall 2014) 2010 2018 Joe Collins (co-advisor, graduated in Fall 2018) 2010 2018 Yi Fu (Committee member, graduated in Spring 2018) 2010 2014 Long Yu (Committee member, graduated in Fall 2014) 2010 2014 Jonathan Martin (Committee member, graduated in Fall

2014) 2010 2014 Jiyoung Park (Committee member, graduated in Fall

2014) 2010 2014 Yanglan Tan (Committee member, graduated in summer

2014) 2011 2014 Huizhuan Yan (co-advisor, graduated in summer 2014)


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2009 2014 Aparna Krishnamurthy (committee member, graduated in spring 2014)

2010 2013 Jennifer Parker (advisor, graduated in winter 2013) 2009 2013 Hugo Miranda (committee member, graduated in winter

2013) 2010 2013 Da Wang (Committee member, graduated in spring

2013) 2010 2013 Li-wen (Rita) Chang (committee member, graduated in

spring 2013) 2010 2013 Lilibeth Salvador (committee member, graduated in

spring 2013) 2010 2013 Yazhou Chen (co-advisor, graduated in summer 2013) 2010 2012 Shen Zou (committee member, graduated in fall 2012) 2008 2012 Desire Djidonou (committee member, graduated in fall

2012) 2008 2010 Malwina Huzarska (committee member, graduated in

fall 2010) 2007 2011 Mengmeng Zhu (advisor, graduated in winter 2011) 2011 Sisi Geng (advisor, rotation) 2010 2011 Yih-Feng Hsieh (advisor, rotation) 2010 2011 Kevin Cooper (advisor, rotation) 2008 2010 Qiuying Pang (co-advisor, graduated in fall 2010) 2007 2010 Yan He (advisor, graduated in spring 2010) 2007 2010 Courtney Morris (committee member, graduated in

summer 2010) 2006 2010 Jin Koh (committee member, graduated in summer

2010)

2007 2009 Barbara Kahn (rotation, committee member, graduated in fall 2009)

2007 2008 Linda Abraham (advisor, rotation) 2006 2007 Emily Wang (advisor, rotation)

Undergraduate Students 2019 2021 Guimei (Mia) Zhao (University of Florida)

2019 2021 Andrez F Lorenzo (University of Florida)

2019 2020 Lindsey Warnock (University of Florida)

2019 2020 Marral K Pourmoghadam (University of Florida)

2019 2020 Naomi Bak (University of Florida)

2018 2020 Suren Jeevaratnam (University of Florida)

2018 2020 Natazia A Quinones (University of Florida)

2017 2020 Ivan Grela (University of Florida)

2019 2020 Xaiowei Ma (University of Florida)

2019 2020 Yuqing Li (University of Florida)

2019 2020 Brittany Kandah (University of Florida)


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2018 2020 Nathalia Tello (SantaFe College& University of Florida)

2017 2019 Angelica T Ortega (University of Florida)

2016 2019 Riley P Moran (University of Florida)

2016 2018 Jacques P Casas (University of Florida)

2016 2018 Brooke M Brown (University of Florida)

2016 2018 Theresa M Kelley (University of Florida)

2016 2018 Peter B Scott (University of Florida)

2016 2017 Kevin Cusack (University of Florida)

2015 2017 Meghan Gaitens (University of Florida)

2015 2016 Benjamin Duong (University of Florida)

2015 2016 Jackie Schneider (University of Florida)

2015 Summer Caroline Severino Malvestiti (Roosevelt University)

2014 2016 Juan Gonzales (New College of Florida)

2013 2015 Leo Zhu (University of Florida)

2012 2015 Dogukan Acikgoz (University of Florida)

2010 2013 Sarah Yi (University of Florida)

2010 2014 Michelle Foele (University of Florida)

2009 2012 Justin Goldsmith (University of Florida)

2009 2013 Johanna M. Strul (University of Florida)

2009 2010 Kwame G. Gyimah (NSF REU Summer Intern)

2009 2010 Bryno H. Gay (NSF REU Summer Intern)

2007 2008 Jason Hall (University of Florida)

2006- 2008 Mark Jackson (undergraduate research project) 2003 Jenie Finley (NSF REU Summer Intern)

Technical Assistant 2018 2019 Bowen Tan (University of Michigan)

Laboratory Scientist 2008 2015 Ning Zhu

Laboratory Technician 2008 2010 Bing Chen

2003 2006 Jeanne Sheffield 2002 2003 Shun Liang 1999 2001 Christina Matson

Other Students 2016 Daniel Dufresne (Summer Research)

2014 Kevin Cusack (Summer Research)

2013 William Jun (Summer Research)


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2013 Daniel Dufresne (Summer Research)

2012 Michelle Chin (Summer Research)

2011 Vedant K Acharya (Summer Research)

2011 Nisha Ramchander (Summer Research)

2010 Isabel Branstrom (Summer Research)

2010 Kiva Ebert (Summer Research)

2009 Jennifer Sanford (Summer Research)

2008 Sau-Hyon Cho (Summer Research) Alec M. Fufidio (Summer Research)

2007 Ryan Walker (Summer Research) 2007 Gordon Wilson (Summer Research) 2007 David Jia (Summer Research) 2006 Justin Goldsmith (Summer Research) 2006 Kern Vijayvargiga (Summer Research)

Other Personnel (Proteomics Core) 2018 2019 Dr. Tingting Wang, Assistant Scientist

2017 2018 Dr. Mengde (Frank) Cao, Senior Chemist

2015 2016 Dr. Jahidul Islam Shohag, Visiting Scientist

2014 2016 Lin Bao, Biological Scientist

2012 2015 Dr. Jinxi Li, Scientific Lab Manager for Mass Spec

2010 2017 Dr. Cecilia Silva Sánchez, Senior Chemist

2008 2014 Majorie Chow, Scientific Manager for Biomarker

2008 2012 Carolyn Diaz, Scientific Lab Manager for Mass Spec

2008 2010 Alfred Chong, Scientific Manager for Peptide Synthesis

2008 2009 Cynthia Bryant, Lab Technician

2008 2009 Scott McClung, Lab Manager for Mass Spec

2010 Summer Khader Ghem, Summer Research Assistant

SERVICE TO PROFESSION Organized Conference and Workshop Feb. 2021 Organizer and Instructor, National Science Foundation Metabolomics

Workshop and Symposium, virtual, May 17 - 18, 2021.

Oct. 2020 Organizer and Instructor, Association of Biomolecular Resource Facilities (ABRF) Education Workshop on Single-Applications, virtual, October 20, 22, 2020.

Jan. 2020 Organization committee, The 7th Conference of Asia Oceania Agricultural Proteomics Organization (AOAPO), Singapore, October 5-7, 2020.

Aug. 2018 Instructor, North American Mass Spectrometry Summer School, University of Wisconsin, Madison, Wisconsin, USA, August 6-9, 2018.


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March 2018 International Organization committee, The 5th Conference of Asia Oceania Agricultural Proteomics Organization (AOAPO), Jinan, China, November 2-5, 2018.

Jan. 2018 Li-Cor 6400/XT and 6800 Photosynthesis Measurement Workshop, University of Florida Genetics Institute, Gainesville, Florida, USA, January 16, 2018.

March 2017 International Advisory committee, The 1st International Proteomics Conference 2017 and the 4th Conference of Asia Oceania Agricultural Proteomics Organization (AOAPO), Kuala Lumpur, Malaysia, August 15-18, 2017.

Jan. 2017 Chair, Organization Committee of Florida Genetics Conference 2017, Gainesville, FL, USA

Dec. 2016 Co-organizer, 8th Annual meeting of Proteomic Society, India; 8th International Symposium on Frontiers in Agricultural Proteome Research and 3rd meeting of Asia Oceania Agricultural Proteomics Organization &

Application in Food and Health . New Delhi, India, Depcember 12-16, 2016.

Dec. 2016 International organization committee, 6th National Plant Proteomics Conference, Hainan, China, December 17-20, 2016.

Sept. 2016 International organization committee, 2nd International Plant Proteomics Organization (INPPO) Conference, Bratislava, Slovakia, September 4-8, 2016.

April 2016 Organizer of the LC-MS/MS Quantitative Proteomics Workshop, Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, April 28-29, 2016.

Current Proteomics Technologies and Challenge 6th International Conference & Expo on Proteomics March 29-31, 2016 Atlanta, Georgia, USA.

Feb. 2016 Session chair, International Conference on Plant Genes and Technology Development, Vienna, Austria, February 10-12, 2016.

Oct. 2015 International organization committee, International Conference on Plant Genes and Vienna, Austria, February 10-12, 2016.

Oct. 2015 Organizer of the Proteomics Research Day at University of Florida Genetics Institute, Gainesville, FL, USA, October 14, 2015.

Sept. 2015 International organization committee and session chair, the 7th International Symposium on Frontiers in Agricultural Proteome Research, and the 2nd AOAPO conference, Goesan-gun, Chungcheongbuk-do, Korea, September 23-24, 2014.

April 2015 Organizer of the LC-MS/MS Quantitative Proteomics Workshop, Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, April 29-30, 2015.

March 2015 O Experimental Design and Sample Collection: Best Practices for Metabolomics and Proteomics Annual Meeting of the Association of Biomolecular Resource Facilities (ABRF).


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St. Louis, MO, USA, March 28-31.

Dec. 2014 Co-organizer of the Gel Based Proteomics Workshop, Indian Institute of Technology (IIT) Bombay, India, December 10-11, 2014.

Oct. 2014 Chair of the Proteomics/Mass Spectrometry Scientific Breakout Session, Midwest & Southeast ABRC Chapters 2014 Annual Conference, Nashville, TN, USA, October 9-12, 2014.

May 2014 Co-Organizer of the SCI Manuscript Writing Workshop, Heilongjiang University, Harbin, China, June 8-10, 2014.

April 2014 Organizer of the Proteomics and Mass Spectrometry Workshop, Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, April 10-11, 2014.

March 2014 Co-organizer of the 20th Plant Biology Symposium on Plant Stress-Omics in a Changing Climate, Penn State, University Park, May 21-23, 2015.

Aug. 2013 Co-organizer of the NSF and NIH Funded Metabolomics Workshop and Symposium, Gainesville, Florida, May 20-23, 2014.

Aug. 2013 Member of the Scientific Committee of the First International Meeting of INPPO (International Plant Proteomics Organization), Hamburg, Germany, August 31-September 4, 2014

Aug. 2013 Organizer of Florida Genetics Conference 2014, Gainesville, FL, USA

June 2013 Member of the Organizing Committee of the First AOAPO International Plant Proteomics Symposium and the Fifth National Plant Proteomics Conference in China, Harbin, China, June 23-27, 2014.

Jan. 2013 Member of the Organizing Committee, 2013 International Scientific Workshop on Plant Secondary Metabolism and Natural Product Biosynthesis, Wuhan, China, July 5-7, 2013.

Aug. 2012 Organizer of Florida Genetics Conference 2013, Gainesville, FL, USA

Aug. 2012 Organizer of the 5th Symposium of Science, Engineering and Biomedicine, University of Florida

July 2012 Organizer of INPPO Plant Proteomics Workshop Mass Spectrometry

Characterization of Proteins, Plant Biology 2012 Annual Conference, American Society of Plant Biologists. Austin, Texas, USA, July 20-24.

Sept. 2010 Organizer of the 4th Symposium of Science, Engineering and Biomedicine, University of Florida

Dec. 2009 Organizer of Proteomics Symposium and Training Workshop for University Teachers at Heilongjiang University, China

Aug. 2009 Organizer of Proteomics Workshop and Symposium, University of Florida

ntegration of Genomics, Proteomics, and Metabolomics 2009 World In Vitro Biology Conference, Charleston, South Carolina, USA

May 2008 Organizer of Proteomics Workshop at Heilongjiang University, China

June 2007 Organizer of Proteomics Workshop at Heilongjiang University, China

April 2005 Organizer of NSF Genome Funded Proteomics Symposium and Workshop


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July 2005 Organizer of Proteomics Hands-on Workshop for NSF REU program

Jan. 2004 Organizer of Danforth Center Proteomics Workshop

Dec. 2003

Journal Editorial/Referee Service: 2021 Present Editorial Board, Proteomes 2021 2022 Guest Editor, Plant Proteomic Research 4.0, International Journal of

Molecular Science 2020 2021 Guest Editor, Plant Proteomics and Protein Structural Biology,

Frontiers in Plant Science 2020 2021 Guest Editor, Journal of Integrative Plant Biology 2020 2021 Editorial committee for a special issue of Frontiers in Molecular

Biosciences on plant-microbe interactions 2020 Present Editorial Board, Archives of Proteomics and Bioinformatics (APB) 2018 Present Associate Editor/Editor, Journal of Proteins and Proteomics (ISSN :

0975-8151) (Springer Nature) 2018 Present Editorial Board, BBA - Proteins and Proteomics 2018 Present Editorial Board, Molecular Plant Sciences 2016 Present Associate Editor, Metabolomics (specialty section of Frontiers in Molecular Biosciences, Frontiers in Environmental Science and Frontiers in Ecology and Evolution) 2016 2020 Editorial Advisory Board, Journal of Proteome Research 2014 2016 Co-Editor of Plant Single Cell Type Systems Biology Research

Topic for Frontiers in Plant Biology 2014 Present Editorial Board, Journal of Proteins and Proteomics 2012 Present Editorial Board, Journal of Proteomics 2012 Present Review Editor and Guest Associate Editor, Frontiers in Plant Science 2011 Present Associate Editor, Frontiers in Plant Proteomics 2011 Present Review Editor, Frontiers in Plant Metabolism and Chemodiversity 2011 Present Section Editor, International Journal of Molecular Sciences 2009 2013 Editorial Board, Frontiers of Biology (ISSN 1673-3509; eISSN 1673- -3622 2006 2017 Editorial Board, Scientific Journals International 2001 Present Referee for Achaea, Acta Biochimica et Biophysica Sinica, Analytical

Chemistry, Applied Biochemistry and Biotechnology, BBA-Proteins and Proteomics Biochemistry, Biologia Plantarum, BMC Plant Biology, CAB Reviews, Chemical Engineering Journal, Critical Review in Biochemistry and Molecular Biology, Current Microbiology, FEBS Letters, Food Chemistry, Frontiers in Plant Metabolism and Chemodiversity, Frontiers in Plant Science, Frontiers in Plant Proteomics, Gene, Genomics, Horticulture Research, Journal of Agricultural and Food Chemistry, Journal of American Society for Horticultural Science, Journal of American Society for Mass Spectrometry, Journal of Biological Chemistry, Journal of Biological Macromolecules, Journal of Chromatography, Journal of Environmental Science and Health, Journal of Experimental Botany,


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Journal of Food and Agriculture, Journal of Integrated Microbiology, Journal of Integrative Omics, Journal of Integrated Plant biology, Journal of Nutrition, Journal of Physical Chemistry, Journal of Plant Nutrition, Journal of Plant Physiology, Journal of Plant Research, Journal of Proteomics, Journal of Proteome Research, Journal of Systematics and Evolution, Journal of Virological Methods, Journal of Visualized Experiments, Letters of Applied Microbiology, Molecular and Cellular Proteomics, Molecular Plant, Natural Chemical Biology, Nature Communications, Nature Scientific Report, New Phytologist, Nutrition, Phytochemistry, Phytopathology, Peptide Letters, Physiologia Plantarum, Phytochemistry, Plant Biology, Plant Biotechnology,The Plant Cell, Plant Cell and Environment, Plant Journal, Plant Physiology, Plant Cell and Physiology, Plant and Soil, Plant Cell Reports, Plant Growth Regulation, Plant Physiology and Biochemistry, Plant Science, Plant Molecular Biology, Plant Signaling and Behavior, Planta, Plos One, Proceedings of the National Academy of Sciences, Proteome Science, Proteomes, Proteomics, Russian Journal of Plant Physiology, Theoretical and Applied Genetics, Trends in Integrative Biology, Trends in Plant Sciences, Vaccine, and Zhejiang University Science B, Reviewer for textbook Biology, 2/e, by Brooker/Widmaier/Graham/Stiling, Reviewer for Biological Science, 5th edition, Reviewer for Freeman et al's Biological Science, 6th edition, The Dynamic Science 3e, Reviewer for the Hillis-Principles of Life, Ph.D. Dissertations from Indian Institute of Technology Bombay, Macquarie Univeristy, Southern Cross University, Universiti Putra Malaysia, University of Vienna (Nima Ranjbar), and Zhejiang University etc.

Grant Review and Panel Service 2021 Hong Kong Research Grants Council, Proposal reviewer

2021 University of Florida Research Seed Fund, Proposal panel

2021 Czech National Science Foundation, Proposal reviewer

2020 Austrian Science Fund, Proposal reviewer


2020 Israel Science Foundation, Proposal reviewer

2020 National Natural Science Foundation of China, Proposal reviewer

2020 National Science Centre Poland, Poland, Proposal reviewer

2020 Hong Kong Research Grants Council, Proposal reviewer

2020 University of Florida Research Seed Fund, Proposal panel

2019 National Science Foundation, Plant-Biotic Interaction (PBI) Program, Division of Integrative Organismal Systems, Proposal reviewer

2019 College of Liberal Arts and Sciences Seed Fund Competition, University of Florida, Proposal reviewer


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2019 UK Biotechnology and Biological Sciences Research Council (BBSRC), the Strategically Longer and Larger (sLoLa) Grant, Proposal reviewer

2019 Israel National Science Foundation, Proposal reviewer

2018 National Science Center of Poland, Proposal reviewer

2018 The Research Foundation-Flanders (Belgium), Proposal reviewer

2017 National Science Foundation, Plant Genome, Proposal reviewer

2017 National Science Foundation, Chemistry of Life Processes, Proposal reviewer

2017 National Science Foundation, Molecular Biophysics, Proposal reviewer

2017 Netherlands Organization for Scientific Research, Proposal reviewer

2016 Fonds de recherche du Québec - Nature et technologies, Proposal reviewer


2016 European Research Council (ERC), Proposal reviewer

2016 National Science Foundation, Physiological Mechanisms and Biomechanics (PMB), Division of Integrative Organismal Systems, Panel member.


2016 University of Missouri Research Foundation, Proposal reviewer 2015 National Science Foundation, Physiological Mechanisms and Biomechanics

Plant Program, Division of Integrative Organismal Systems, Panel.

2015 United States Department of Agriculture, National Institute for Food and Agriculture (NIFA), Agriculture and Food Research Initiative (AFRI) Exploratory Research Program, Proposal reviewer

2015 United States Defense Threat Reduction Agency, Research and Development, Basic and Applied Sciences, Proposal reviewer


2014 National Science Foundation, Historically Black Colleges and Universities Undergraduate Program (HBCU-UP) Research Initiation Award (RIA) track, Proposal reviewer

2014 UK Biotechnology and Biological Sciences Research Council, Proposal reviewer 2014 National Science Foundation, The Physiological and Structural Systems,

Division of Integrative Organismal Systems, Proposal reviewer

2014 National Science Foundation, The Physiological Mechanisms and Biomechanics Panel, Division of Integrative Organismal Systems, Panel member

2014 National Institute of Health, Research Centers in Minority Institutions Program, Pilot Project Proposal reviewer

2014 Macquarie University Research Fellowships Scheme (MQRF), Australia, Fellowship in Proteomics reviewer

2014 National Science Foundation, The Plant Genome Program, Proposal reviewer


2014 Deutscher Akademischer Austausch Dienst (DAAD, German Academic Exchange Service), Proposal reviewer

2014 S


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2014 Hong Kong Research Grants Council, Proposal reviewer

2013 UK Biotechnology and Biological Sciences Research Council, Proposal reviewer 2013 National Science Foundation of China, Plant Signaling Panel proposal reviewer

2013 National Science Foundation of China, Plant Genome Panel proposal reviewer

2013 National Science Foundation of China, Biochemistry Panel proposal reviewer

2013 University of Missouri Research Foundation, Proposal reviewer 2012 Czech National Science Foundation, Proposal reviewer 2012 National Science Foundation, Networks and Regulation panel member

2012 National Science Foundation, Plant genome program proposal reviewer

2012 National Science Foundation of China, Plant metabolism panel reviewer

2011 Czech National Science Foundation, Proposal reviewer 2011 Estonian National Science Foundation, Proposal reviewer

2010 National Science Foundation, Cellular Regulation panel member

2010 National Science Foundation, IOS program proposal reviewer

2010 National Science Foundation, MCB program propsal reviewer

2009 Luxembourg National Research Fund (Fonds National de la Recherche), proposal reviewer

2009 National Science Foundation of China, proposal reviewer

2009 National Science Foundation, MCB program proposal reviewer

2008 National Science Foundation, Signal transduction program proposal reviewer

2008 Israel National Science Foundation, proposal reviewer

2008 National Science Foundation of China, proposal reviewer

2007 National Science Foundation, MRI panel member

2007 United States Department of Agriculture, CRIS proposals

2006 National Science Foundation, MRI panel member

Professional Societies 2017 Present Founding member of the North American Metabolomics Association. 2015 Present Memember of the American Association for the Advancement of

Science (AAAS). 2012 Present Memember of the American Society for Biochemistry and Molecular

Biology (ASBMB). 2012 2014 Memember of the Japanese Society of Botany. 2011 Present Education Committee, International Plant Proteomics Organization (INPPO) 2011 Present Member, U.S. Representative and General Body Member of

International Plant Proteomics Organization (INPPO)

2009 Present Member of the Science Advisory Board of Alkali Soil Natural Environmental Science Center (ASNESC), Northeast Forestry University, China

2009 2011 Member of American Society for In Vitro Biology

2008 2011 Member of Japanese Society of Plant Physiologists


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2003 Present Member of American Society for Mass Spectrometry (ASMS)

2003 Present Member of American Biological Resources Facility (ABRF)

2003 2006 Member of Midwest Mass Spectrometry Society

2002 Present Member of the Proteomics Society

2002 Present Member of American Society for Plant Biology (ASPB)

Scientific Advisory Board 2019 Present Scientific Advisory Board (SAB) National Science Foundation Plant

Genome Peptide Atlas Project

SERVICE TO THE UNIVERSITY OF FLORIDA 2020 Chair, Qualifying Exam Committee, Plant Molecular and Cellular

Biology Program, UF

2020 Advisor, University of Florida Genetics Institute COVID-19 reopening task force, UF

2020 Advisory committee, Department of Medicinal Chemistry Mass Spectrometry Core, College of Pharmacy, UF

2019 Member, University of Florida Health Cancer Center (UFHCC) Shared Resources Oversight Committee (ShROC)

2019 Fall 2019 Commencement Marshal, University of Florida

2018 Chair, Faculty Search Committee (Assistant Professor in Marine Proteomics and Metabolomics), Department of Biology, CLAS, UF

2018 Faculty Teaching Mentorship Committee, Department of Biology, CLAS, UF

2018 Merit Review Committee, Department of Biology, CLAS, UF

2017 Chair, Seminar Committee, Genetics Institute, University of Florida


2017 Chair, Qualifying Exam Committee, Plant Molecular and Cellular Biology Program, UF

2016 Present Public Relations and Fund Raising Committee, Department of Biology, UF

2016 Chair, 2017 Florida Genetics Conference Organization Committee, UF


2016 Spring commencement marshal, University of Florida

2016 Faculty Mentor, Department of Biology, CLAS, UF

2015 Present Mass Spectrometry Advisory Committee, Center for Environmental and Human Toxicology, UF

2014 Present Biology Building Committee, Department of Biology, UF

2014 2017 Advisory Council of Department of Biology, UF

2014 2015 Electron Microscopy Core Director/Faculty Search Committee, UF

2014 Chair of Assistant Scientist Search Committee, ICBR, UF


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2014 2016 Biology Graduate Committee, Department of Biology, UF

2013 2014 Chair of Seminar Committee, Plant Molecular and Cellular Biology Program, UF.

2013 Chair, Biology Department Hiring Priorities Committee, UF

2013 HHMI Distinguished Mentor Award Committee, UF

2013 Member of Advisory Board for a Keck Foundation proposal led by Professor Malcolm Maden, UF

2012 Present Graduate Committee, Genetics Graduate Program of Genetics Institute, University of Florida

2013 Present Advisory Committee, Computational Infrastructure of Interdisciplinary Center for Biotechnology Research, UF

2012 Co-chair of Biology symposium at annual retreat, Department of Biology, University of Florida

2012 Present Executive Committee of Genetics Institute, University of Florida

2012 2014 Faculty Council of College of Liberal Arts and Sciences, UF

2012 Spring commencement marshal leading College, University of Florida

2012 2013 Merit Review Committee, Department of Biology, CLAS

2012 Teaching Award Selection Committee, College of Liberal Arts and

Sciences (CLAS)

2011 2015 Admissions Committee, Department of Biology Graduate Program, UF

2011 Present Greenhouse Committee, Department of Biology, UF

2010 Present Tenure and Promotion Committee, Interdisciplinary Center for

Biotechnology Research, UF

2010 2011 Seminar Committee, Plant Molecular and Cellular Biology Program.

2010 Qualifying Exam Committee, Plant Molecular and Cellular Biology Program.

2010 Admissions Committee, Plant Molecular and Cellular Biology Program.

2010 Seminar Committee, Department of Biology, University of Florida

2009 Present Academic Status committee, UF Genetics Graduate Program.

2009 2011 Departmental Strategic Planning Committee, Department of Biology 2009 2011 Biology Building Task Force, Department of Biology 2009 Commencement Marshal, University of Florida

2008 2009 Chair of Seminar Committee, Department of Botany

2008 Commencement Marshal, University of Florida

2007 Reviewer, UF Research Opportunity Incentive Seed Fund.

2007 2008 Seminar Committee, Plant Molecular and Cellular Biology Program.

2007 2008 Chair, Oversight Committee, UF ICBR Proteomics Core Facility

2007 2009 Seminar Committee, Department of Botany

2006 Present Green House Committee, Genetics Institute, UF (Chair since 2008) 2006 2007 Faculty Search Committee, Department of Botany


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2006 2009 Green House Committee, Department of Botany

OTHER SERVICES TO THE COMMUNITY

2021 Competition assessment officer for the 2021 State FAMAT Convention, Rosen Plaza Hotel, Orlando, FL, USA, April 18-19, 2021.

2021 Judge of Graduate Student Speaker Competition at the 82nd American Society of Plant Biologists Southern Section Annual Conference, virtual zoom, April 16 -18, 2021.

2020 Lab host for 50 High School Students (attending the 57th Florida Junior Science, Engineering, and Humanities Symposium, Gainesville, Florida), January 27, 2020, University of Florida Genetics Institute and Interdisciplinary Center for Biotechnology Research, FL.

2020 Lab host for 40 high school students (Academy of Biotechnology and Medical Research Program from Ponte Vedra High School, FL), January 15, 2020, University of Florida Genetics Institute and Interdisciplinary Center for Biotechnology Research, FL.

2019 Lab host for 10 undergraduate minority students (SHPEP scholars), May 22, 2019, University of Florida Genetics Institute, FL.

2019 Judge of Student Speaker Competition at the 56th Florida Regional Junior Science, Engineering, and Humanities Symposium, January 29, 2019, University of Florida, Gainesville, Florida.

2019 Lab host for 20 High School Students (attending the 56th Florida Junior Science, Engineering, and Humanities Symposium, Gainesville, Florida), January 28, 2019, University of Florida Genetics Institute, FL.

2018 Panelist, HUPO Early Career Research (ECR) Initiative - The Mentoring Day, HUPO 17th Annual World Congress (HUPO 2017) in Orlando, Florida, USA, September 30th, 2018.

2018 High School Students Hands-on Workshop (30 high school students), University of Florida, Gainesville, Florida, July 16, 2018.

2018 High School Teachers Hands-on Workshop (24 high school teachers), CATALySES (Collaborating to Advance Teaching and Learning of Science Educators and Students) workshop, University of Florida Genetics Institute, Gainesville, Florida, June 19-20, 2018.

2018 Lab host for 30 High School Students (attending the Science Explorations Workshop), March 09, 2018, University of Florida Genetics Institute, FL.

2018 Judge of Student Speaker Competition at the 55th Florida Regional Junior Science, Engineering, and Humanities Symposium, January 30

31, 2018, Gainesville, Florida.

2018 Lab host for 20 High School Students (attending the 55th Florida Junior Science, Engineering, and Humanities Symposium, Gainesville, Florida), January 29, 2018, University of Florida Genetics Institute, FL.


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2017 High School Students Hands-on Workshop (36 high school students), Explorations in Biomedical Research (EBR) Summer Program for High School Students, University of Florida Genetics Institute, Gainesville, Florida, July 19-20, 2017.

2017 High School Teachers Hands-on Workshop (15 high school teachers), Summer Science institute, University of Florida Genetics Institute, Gainesville, Florida, June 26-27, 2017.

2017 Judge of Student Speaker Competition at the 54th Florida Regional Junior Science, Engineering, and Humanities Symposium, January 29

31, 2017, Gainesville, Florida.

2017 Lab host for 25 High School Teachers and Students (attending the 54nd Florida Junior Science, Engineering, and Humanities Symposium, Gainesville, Florida)

2017 Lab host for science bowl team and AP biology class. The group includes 29 of top performing students (17 girls and 12 boys).

2016 Lab host for 38 High School Teachers and Students from Ponte Vedra High School, Florida for their day trip to University of Florida Genetics Institute.

2016 Lab host for two high school teachers for summer research and curriculum development (Dr. Dr. Iris Payan from Hollywood Hills High School, FL and Ms. Donely Santiago from Mandarin High School, FL)

2016 Lab host for 11 high school students and 5 teachers from the Lake Nona High School, Orlando, Florida

2016 Lab host for students attending the 5th Young Environmental Scientists Meeting, Feb. 28 Mar. 2, 2016, Gainesville, Florida.

2015 Lab host for 12 high school students and a teacher from the Biotechnology Program at Pace High School, Pensacola, Florida

2015 The Scientist magazine-Interview with Dr. Ruth Williams, the Science writer (I have provided advice and comments on current and future of single cell metabolomics)

2015 Proteomics and Mass Spectrometry Workshop for 24 High School Students and Teachers (Mysterious White Powder lab on July 15th)

2015 Judge of student posters at the 2015 Creativity in the Arts and Science Event (CASE), University of Florida, Gainesville, Florida

2015 Lab host for 30 High School Teachers and Students (attending the 52nd Junior Science, Engineering, and Humanities Symposium, Florida)

2014 Judge of poster awards at the 6th Proteome Society Meeting, India and International Proteomics Conference. Bombay, India, December 7-9.

2014 Judge of poster presentation at the 3rd Annual Conference on Functional Biology Research, Tallahassee, Florida

2014 Judge of Student Speaker Competition of 51st Annual Junior Science, Engineering, and Humanities Symposium, Florida


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2013 Judge of Student Science Fair Competition, Lincoln Middle School, Gainesville, Florida

2013 Judge of Student Speaker Competition of 50th. Annual Junior Science, Engineering, and Humanities Symposium, Florida

2013 Lab Demonstration for 10 High School Teachers and Students

2013 Evaluator, Advanced Placement Program, The College Board, USA

2012 Board member of HuaGen Chinese School, Gainesville, FL, USA


2012 Lab Demonstration for High School Teachers and Students




2009 Judge of Alachua County Middle School Science Fair



2008 Lab Demonstration for High School Teachers


2007 Lab Host for Santa Fe Community College Students

2007 ABC news-Science and Technology (I have provided advice and

knowledge to a reporter on phytochemicals and human life)

2006 Lab Demonstration for Florida High School Teachers


2006 Lab Host for Santa Fe Community College Students

2006 Judge of Alachua County Middle School Science Fair

2003 2005 Member of Danforth Center Controlled Substance Safety Committee

OTHER ACTIVITIES AT THE UNIVERSITY OF FLORIDA 2006 Present Member and graduate faculty, Department of Biology, UF

2006 Present Member and graduate faculty, Plant Molecular and Cellular Biology (PMCB) Program, UF

2006 Present Member and graduate faculty, Genetics Institute, UF


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PUBLICATIONS FROM UNIVERSITY OF FLORIDA Note on author culture: In the general molecular biology and biochemistry areas, the first

author is usually the student, postdoctoral associate or technician who conducted the bulk of the experiments and usually drafts the manuscript. The middle authors are arranged based on the significance and amount of contributions to the work. The authors who made more contributions are listed at the beginning places of the author list. The last author is usually the principal Investigator and senior author. The senior author usually secured the funding, conceived the ideas, designed the experiments and analysis goals, managed the activities and mentored the participants in experiments, data analysis and reporting. The last author (in rare case the last two authors) is usually the corresponding author in charge of manuscript quality, guiding the manuscript through the peer-review process, and financial as well as copyright aspects of the publications.

Symbols refer to the personnel that I mentored: *graduate student; **undergraduate or high school student; §postdoctoral researcher; #other personnel. The numbers of the publications closely related to Chen lab research are highlighted in bold, and others are either collaborative research publications or publications prior to the current position.

2021 Chen lab research projects These are my own research projects, and experiments are led by my laboratory personnel.

261) Balmant, K.*, Lawrence II, S.*, Duong, B.**, Zhu, F.*, Zhu, N. #, Nicklay, J. #, Chen, S. (2021) Redox proteomics of stomatal immunity reveals a role of lipid transfer protein in plant defense. Journal of Proteomics (in press).

260) David, L., Kang, J., Dufresne, D., Zhu, D., Chen, S. (2021) Multi-omics revealed molecular mechanisms underlying guard cell systemic acquired resistance. International Journal of Molecular Sciences 22(1), 191. doi: 10.3390/ijms22010191. (22 pages)

259) Kang, J., David, L., Cang, J., Chen, S. (2021) Three-in-one simultaneous extraction of proteins, metabolites and lipids for multi-omics. Frontiers in Genetics, in press.

258) Guan, Q., Tan, B., Tian, J-K., Chen, S. (2021) Short commentary on: Comparative proteomics of Mesembryanthemum crystallinum guard cells and mesophyll cells in the transition from C3 to CAM. Journal of Data Mining in Genomics & Proteomics, 12 (1), 234.

257) Chen, L., Chhajed, S., Zhang, T., Collins, J., Pang, Q.*, Song, W., He, Y.*, Chen, S. (2021) Identification of protein complexes in methionine chain-elongation and leucine biosynthesis. Scientific Reports 11(1), 3524. doi: 10.1038/s41598-021-82790-4.

256) Yu, B., Chen, G., DuanMu, H., Dufresne, D., Erickson, J.E., Koh, J., Li., H., Chen, S. (2021) Physiological and proteomic analysis of Brassica napus in response to salt stress. Journal of Proteomics and Bioinformatics 14 (2), 523. (17 printed pages)


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2021 Chen lab collaborative projects These are projects closely related to my research projects and interests. My inclusion as an author reflects the intellectual contributions that I made to the work, including design, ideas and materials, proteomics and mass spectrometry analysis, data interpretation, assistance in manuscript writing and peer-review process.

255) Li, J., Ji, M., Zhang, T., Yang, C., Liu, H., Chen, S., Li, H.L., Li, H. (2021) Quantitative proteomics and redox proteomics of sugar beet monosomic addition line M14 in response to salt stress. Plant Growth Regulation (in press)

254) Wang, Y., Wang, S., Tian, Y., Chen, S., Li, H., Ma, C., Li, H. (2021) Functional characterization of a sugar beet BvbHLH93 transcription factor in salt stress tolerance. International Journal of Molecular Sciences 22(7), 3669; https://doi.org/10.3390/ijms22073669

253) Xie, H., Li, B., Chang, Y., Zhang, Y., Hou, X., Guo, S., Miao, Y., Wang, Q., Chen, S., Li, Y., Dai, S. (2021) Selection and validation of reference genes for RT-qPCR analysis in Spinacia oleracea under abiotic stress. Genes 2021, 4853632; https://doi.org/10.1155/2021/4853632

252) Ghimire, K., Gupta, S., Geng, S.*, Chen, S., Boe, A., Wu, Y. (2021) Identification of physiological and morphological traits governing high water use efficiency in alfalfa. Journal of Agronomy and Crop Science 00,1 10; doi.org/ 10.1111/jac.12483

2021 Proteomics and Mass Spectrometry (PM) Facility service projects I have had the honor of serving as the Faculty Director of the PM core facility since 2008, and interact closely with customers in many different areas of biomedical research. The authorship indicates my intellectual contribution beyond just providing data, including experimental consultation, mass spectrometry data analysis and interpretation, assistance in manuscript writing and peer-review process.

251) Lazensky, R., Silva-Sanchez, C.#, Li, J., Chow, M.#, Chen, S., Kroll, K.J., Tripp, K., Walsh, M., Denslow, N. (2021) Investigating an increase in Florida Manatee (Trichechus Manatus Latirostris) mortalities in 2013 using a proteomic approach. Scientific Reports 11, 4282. doi.org/10.1038/s41598-021-83687-y

2020 Chen lab research projects 250) Chhajed, S*., Mostafa, I§., He, Y*., Abou-Hashem, M., El-Domiaty, M., Chen, S.

(2020) Glucosinolate biosynthesis and the glucosinolate myrosinase system in plant defense. Agronomy 10, 1786. doi:10.3390/agronomy10111786. (25 pages)

249) Zhang, T*., Schneider, J.D#., Lin, C*., Koh, J., Chen, S. (2020) Proteomics data of SNF1-related protein kinase 2.4 interacting proteins revealed by immunoprecipitation-mass spectrometry. Data in Brief 32, 106326. doi.org/10.1016/j.dib.2020.106326. (9 pages)

248) Guan, Q., Kong, W., Zhu, D., Zhu, W., Dufresne, C., Tian, J-K., Chen, S. (2021) Comparative proteomics of Mesembryanthemum crystallinum guard cells and


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mesophyll cells in transition from C3 to CAM. Journal of Proteomics 231, 104019. doi: 10.1016/j.jprot.2020.104019.

247) David, L., Kang, J., Dufresne, C., Chen, S. (2020) Development of an integrative proteomics, metabolomics and lipidomics methodology - a case study of plant defense molecular networks. Journal of Biomolecular Techniques S23, PMID: 32831729; PMCID: PMC7424826.

246) Guan, Q., Tan, B.W., Kelley, T.M., Tian, J-K., Chen, S. (2020) Physiological changes in Mesembryanthemum crystallinum during the C3 to CAM transition induced by salt stress. Frontiers in Plant Science 11, 283. doi: 10.3389/fpls.2020.00283.

245) Lawrence, S.R. II, Gaitens, M., Guan, Q., Dufresne, C., Chen, S. (2020) S-nitroso-proteome revealed in stomatal guard cell response to flg22. International Journal of Molecular Sciences (IJMS) 21, 1688; doi:10.3390/ijms21051688 (19 pages).

244) Pang, Q.*, Zhang, T.*, Lin, C.*, Kong, W.*, Chen, S. (2020) Proteomics and phosphoproteomics revealed molecular networks of stomatal immune responses. Planta 252, 66; doi.org/10.1007/s00425-020-03474-3 (17 pages).

243) Xiang, Q.Y., Lott, A.A., Asssmann, S.M., Chen, S. (2020) Advances and perspectives in the metabolomics of stomatal movement and the disease triangle. Plant Science 302, 110697; doi.org/10.1016/j.plantsci.2020.110697 (11 pages).

242) Jeevaratnam, S., Lin, C., Chen, S. (2020) Effect of sonication on plant stomatal movement. Journal of Undergraduate Research 22, 1-7.

241) Feng, G.*, Yoo, M.§, Davenport, R. #, Boatwright, J.L.*, Koh, J.§, Chen, S., Barbazuk, W.B. (2020) Jasmonate induced alternative splicing responses in Arabidopsis. Plant Direct 00, 1-18. https://doi.org/10.1002/pld3.245

240) Kong, W.*, Yoo, M., Noble, J.D.*, Kelley, T.M.**, Li, J. #, Kirst, M., Assmann, S. M., Chen, S. (2020) Molecular switches in Mesembryanthemum crystallinum guard cells underlying the C3 to CAM transition. Plant Molecular Biology 103, 653 667. doi.org/10.1007/s11103-020-01016-9

239) Chen, S. (2020) Stomatal guard cell. Scholarly Community Encyclopedia, https://encyclopedia.pub/item/revision/8a1fde48a3cd477e5a70a6d0de77fc7f (not peer-reviewed)

238) Chen, S. (2020) Mustard oil bomb. Scholarly Community Encyclopedia, https://encyclopedia.pub/4474 (not peer-reviewed)

2020 Chen lab collaborative projects

237) Zhu, W., Han, H., Liu, A., Guan, Q., Kang, J., David, L., Dufresne, C., Chen, S., Tian, J. (2021) Combined ultraviolet and darkness regulation of medicinal metabolites in Mahonia bealei revealed by proteomics and metabolomics. Journal of Proteomics 233, 104081. doi.org/10.1016/j.jprot.2020.104081 (a total of 16 print pages).

236) Yu, J., Li, Y., Qin, Z., Guo, S., Li, Y., Miao, Y., Song, C., Chen, S., Dai, S. (2020) Plant chloroplast stress response: insights from thiol redox proteomics. Antioxidant and Redox Signaling 33 (1), 35 57. doi: 10.1089/ars.2019.7823.

235) Wang, Y., Afewroki, Y., Geng, S.*, Kanchupati, P., Gu, M., Martin, C., Rude, B., Tefera, H., Kim, Y., Ge, X., Auger, D., Chen, S., Yang, P., Hu, T., Wu, Y. (2020)


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Hydrotropism in the primary roots of maize. New Phytologist 226(6),1796-1808. doi: 10.1111/nph.16472..

2020 Proteomics and Mass Spectrometry (PM) Facility service projects

234) Mao, J., Jain, A., Denslow, N.D., Nouridelavar, M., Chen, S., Wang, T. #, Zhu, N. #, Koh, J. #, Sarma, S.J., Sumner, B.W., Lei, Z., Sumner, L.W., Bivens, N.J., Roberts, R.M., Tuteja, G., Rosenfeld, C.S. (2020) Bisphenol A and bisphenol S disruptions of the mouse placenta and potential effects on the placenta-brain axis. Proceedings of National Academy of Sciences USA (in press) doi/10.1073/pnas.1919563117.

233) Mona, M., Kobeissy, F., Park, Y.J., Miller, R., Salah, W., Koh, J.#, Yoo, M.§, Chen, S., Cha, S. (2020) Secretome profiling of inductive signals for mesenchymal stem cell transdifferentiation into salivary progenitor cells. International Journal of Molecular Sciences (IJMS) 21, 9055; doi:10.3390/ijms21239055. (17 pages)

232) Wilson, K., Zhu, F.,# Zheng, R.,# Chen S, and Ely B. (2020) Identification of proteins associated with two diverse Caulobacter Phicbkviruses. Archives of Virology 165, 1995 2002. https://doi.org/10.1007/s00705-020-04707-2

2019 Chen lab research projects 231) Zhu, M., Geng, S*., Guan, Q*., Chen, S., Assmann, S.M. (2019) Metabolomics of

red light-induced stomatal opening in Arabidopsis thaliana: coupling with abscisic acid and jasmonic acid metabolism. The Plant Journal (in press) doi: 10.1111/tpj.14594.

230) Misra, B.B§., Reichman, S., Chen, S. (2019) The guard cell ionome: understanding the role of ions in guard cell functions. Progress in Biophysics and Molecular Biology 146, 50-62. (https://doi.org/10.1016/j.pbiomolbio.2018.11.007).

229) Zhang, T§., Chhajed, S*., Schneider, J.D#., Feng, G., Silveira, J.A., Song, W., Chen, S. (2019) Proteomic characterization of MPK4 signaling network and putative substrates. Plant Molecular Biology 101(3), 325-339. doi: 10.1007/s11103-019-00908-9.

228) David, L*., Kang, J*., Chen, S. (2019) Untargeted metabolomics of Arabidopsis stomatal immunity. The Arabidopsis Protocols Book-Methods in Molecular Biology Series (Jose J. Sanchez-Serrano & Julio Salinas eds). Fourth edition, Humana Press.

227) Chhajed, S*., Misra, B.B§., Tello, N#., Chen, S. (2019) Chemodiversity of the glucosinolate-myrosinase system at the single cell type resolution. Frontiers in Plant Science 10, 618. doi: 10.3389/fpls.2019.00618. (11 pages)

226) Zhang, T*., Lin, C*., Schneider, J.D#., Geng, S*., Ma, T*., Lawrence, S.R*., Dufresne, C.P., Harmon, A.C., Chen, S. (2019) MPK4 phosphorylation dynamics and interacting proteins in plant immunity. Journal of Proteome Research 18(3), 826-840. doi: 10.1021/acs.jproteome.8b00345.

225) Collins, J* Chen, S., Gurley, W. (2019) The C-terminal WD40 repeats on the TOPLESS co-repressor function as a protein-protein interaction surface. Plant Molecular Biology 100, 47-58. doi: 10.1007/s11103-019-00842-w.


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224) David, L*., Harmon, A., Chen, S. (2019) Plant immune responses - from guard cells and local responses to systemic defense against bacterial pathogens. Plant Signaling and Behavior 14 (5), e1588667. (DOI: 10.1080/15592324.2019.1588667).

223) David, L*., Kang, J*., Chen, S. (2019) Targeted metabolomics of plant hormones and redox metabolites in stomatal immunity. Methods in Molecular Biology (Antony Champion & Laurent Laplaze eds), 2085 (6), 79-92 (ISBN: 978-1-0716-0141-9).

222) Meng, L#., Zhang, T*., Geng, S*., Scott, P.B#., Li, H., Chen, S. (2019) Jasmonate ZIM Domain 7 regulated proteomic and metabolomic changes in Arabidopsis drought tolerance. Journal of Proteomics 196, 81-91.


221) Yu, X., Xu, G., Li, B., de Souza V, L., Liu, H., Moeder, W., Chen, S., de Oliveira, M.V.V., de Souza, S.A., Shao, W., Rodrigues, B., Ma, Y., Chhajed, S., Xue, S., Berkowitz, G.A., Yoshioka, K., He, P., Shan, L. (2019) The receptor kinases BAK1/SERK4 regulate Ca2+ channel-mediated cellular homeostasis for cell death containment. Current Biology 29(22), 3778-3790.e8. doi: 10.1016/j.cub.2019.09.018.

220) Lv, X., Chen, S., Wang, Y. (2019) Advances in understanding the physiological and molecular responses of sugar beet to salt stress. Frontiers in Plant Science 10, 1431 (11 pages) doi: 10.3389/fpls.2019.01431

219) Li, S., Yu, J. Li, Y., Zhang, H., Bao, X., Xu, C., Wang, X., Cai, X., Wang, Q., Wang, P., Guo, S., Miao, Y., Chen, S., Qin, Z., Dai, S. (2019) Heat-responsive proteomics of a heat-sensitive spinach variety. International Journal of Molecular Sciences (IJMS) 20(16), 3872; https://doi.org/10.3390/ijms20163872. (21 pages)

218) Argueso, C.T., Assmann, S.M., Birnbaum, K., Chen, S., Dinneny, J., Doherty, C.J., Eveland, A.L., Friesner, J., Greenlee, V., Law, J.A., Marshall-Colón, A., Mason, G.A.,

lley, J.W., Williams, C. (2019) Directions for research and training in plant omics: big questions and big data. Plant Direct 1 16. DOI: 10.1002/pld3.133. (16 pages)

217) Ji, M., Wang, K., Wang, L., Chen, S., Li, H., Ma, C., Wang, Y. (2019) Overexpression of a S-adenosylmethionine decarboxylase from sugar beet M14 increased Araidopsis salt tolerance. International Journal of Molecular Sciences (IJMS) 20, 1990; doi:10.3390/ijms20081990. (14 pages)

216) Doherty, C., Friesner, J., Gregory, B.D., Loraine, A.E., Megraw, M., Provart, N.J., Slotkin, R.K., Town, C., Assmann, S.M., Axtell, M., Berardini, T., Chen, S., Gehan, M.A., Huala, E., Jaiswal, P., Larson, S., Li, S., May, S.T., Michael, T., Pires, J.C., Topp, C.N., Walley, J.W., Wurtele, E.S. (2019) Arabidopsis bioinformatics resources: the current state, challenges, and priorities for the future. Plant Direct 3, 1 7. doi.org/10.1002/pld3.109

215) Fountain, J., Yang, L., Pandey, M., Bajaj, P., Alexander, D., Chen, S., Kemerait, R., Varshney, R., Guo, B. (2019) Carbohydrate, glutathione, and polyamine metabolism are central to Aspergillus flavus oxidative stress responses over time. BMC Microbiology 19(1), 209 (14 pages). doi: 10.1186/s12866-019-1580-x.


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214) Ge, Y., Paisie, T., Chen, S., Concannon, P. (2019) UBASH3A regulates the synthesis and dynamics of T-cell receptor-CD3 complexes. Journal of Immunology 203(11), 2827-2836. doi: 10.4049/jimmunol.1801338.

213)Rathi, D., Pareek, A., Zhang, T., Pang, Q., Chen, S., Chakraborty, S., Chakraborty, N. (2019) Metabolite signatures of grasspea (Lathyrus sativus L.) suspension-cultured cells illustrate dehydration response and acclimation. Planta 250(3), 857-871. doi: 10.1007/s00425-019-03211-5.

212) Crane, R.A., Valdez, M.C., Castaneda, N., Jackson, C.J., Mostafa, I., Kong, W., Chhajed, C., Chen, S., Brusslan, J.A. (2019) Negative regulation of age-related developmental leaf senescence by the IAOx pathway, PEN1 and PEN3. Frontiers in Plant Science 10, 1202. (14 pages) doi: 10.3389/fpls.2019.01202.


211) Cai, L., Tanada, Y., Bello, G., Flemming, J., Alkassis, F., Ladd, T., Golde, T., Koh, J., Chen, S., Kasahara, H. (2019) Cardiac MLC2 kinase localizing at Z-disc and interacting w -actinin2. Scientific Reports 9, 12580 (11 pages). https://doi.org/10.1038/s41598-019-48884-w.

210) Bousquet, M.S., Ratnayake, R., Pope, J., Chen, Q.Y., Chen, S., Zhu, F., Carney, T.J., Gharaibeh, R.J., Jobin, C., Paul, V.J., Luesch, H. (2019) Seaweed natural products modify the host inflammatory response via Nrf2 signaling and alter the colon microbiome and gene expression. Free Radical Biology and Medicine 2019 Sep 16. pii: S0891-5849(19)30996-7. (18 pages) doi: 10.1016/j.freeradbiomed.2019.09.013.

2018 Chen lab research projects 209) Misra, B.B., Reichman, S., Chen, S. (2018) The guard cell ionome: understanding

the role of ions in guard cell functions. Progress in Biophysics and Molecular Biology (https://doi.org/10.1016/j.pbiomolbio.2018.11.007).

208) Collins, J., Dufresne, C., Gurley, W., Chen, S. (2018) Proteomics dataset of reproducible contaminants that obscure identification of Topless interactors in Arabidopsis. Data in Brief 20, 909 916. doi.org/10.1016/j.dib.2018.08.059.

207) Lin, C., Chen, S. (2018) New functions of an old kinase MPK4 in guard cells. Plant Signaling and Behavior 13, 5 (e1477908) doi:10.1080/15592324.2018.1477908.

206) Pang, Q., Zhang, T., Wang, Y., Kong, W., Guan, Q., Yan, X., Chen, S. (2018) Metabolomics of early stage plant cell-microbe interaction using stable isotope labeling. Frontiers in Plant Metabolism and Chemodiversity 9, 760. doi: 10.3389/fpls.2018.00760.

205) Lawrence, L.*, Pang, Q.#, Kong, W.*, Chen, S. (2018) Stomata Tape-Peel: an improved method for guard cell sample preparation. Journal of Visual Experiments 137, e57422, doi:10.3791/57422.

204) Zhang, T.§, Meng, L.#, Kong, W.*, Yin, Z.*, Wang, Y.*, Schneider, J.D.#, Chen, S. (2018) Quantitative proteomics reveals a role of JAZ7 in plant defense response to Pseudomonas syringae DC3000. Journal of Proteomics 175, 114-126. doi: 10.1016/j.jprot.2018.01.002.


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203) Ma, T.*, Yoo, M.§, Zhang, T.§, Liu, L.*, Koh, J.#, Song, W., Harmon, A., Sha, W., Chen, S. (2018) Characterization of thiol redox modifications of SnRK2.6-2C from Brassica napus. FEBS Openbio doi:10.1002/2211-5463.12401.


202) Boatwright, J.L., McIntyre, L.M., Morse, A.M., Chen, S., Yoo, M-J., Koh, J., Soltis, P.S., Soltis, D.E., Barbazuk, W.B. (2018) Homeolog-specific expression in recently formed Tragopogon allopolyploids. Genetics 210(3), 883-894. doi: 10.1534/genetics.118.301564.203.

201) Yu, J., Zhang, Y., Liu, J., Wang, L., Liu, P., Yin, Z., Ma, J., Lu, Z., Wang, T., She, Y., Chen, S., Li, Y., Dai, S. (2018) Hydrogen peroxide response and PutGLP-mediated ROS homeostasis in roots of Puccinellia tenuiflora revealed from proteomics analysis. Planta 248(5), 1079-1099. doi: 10.1007/s00425-018-2940-8. 202)

200) Zhao, Q., Chen, W., Bian, J., Xie, H., Xu, C., Ma, J., Cai, X., Wang, X., Wang, Q., Li, Y., She, Y., Chen, S., Zhou, Z., Dai, S. (2018) Proteomics and phosphoproteomics of heat stress-responsive mechanisms in spinach. Frontiers in Plant Science 9, 800. doi: 10.3389/fpls.2018.00800.

199) Suo, J., Zhang, H., Zhao, Q., Song, B., Cao, J., Chen, S., Wang, T., Luo, J., Guo, L., Zhang, X., Ma, J., She, Y., Dai, S. (2018) Na2CO3-responsive photosynthetic and ROS scavenging mechanisms in chloroplasts of halophyte Puccinellia tenuiflora revealed by proteomics and phosphoproteomics. Genomics, Proteomics and Bioinformatics (in press)

198) Zhou, X., Andrade, M.O., Teper, D., Zhang, T., Chen, S., Song, W., Wang, N. (2018) A phosphorylation switch on Lon protease determines the fate of bacterial type III secretion system in host. mBio 9, e02146-17. doi.org/10.1128/mBio.02146-17.

197) Yang, L., Fountain, J.C., Ji, P., Chen, S., Lee, R.D., Kemerait, R.C., Guo, B. (2018) Deciphering drought-induced metabolic responses and regulation in developing maize kernels. Plant Biotechnology Journal 16, 1616 1628. doi: 10.1111/pbi.12899.

196) Chen, H., Wang, B., Geng, S., Arelleno, C., Chen, S., Qu, R. (2018) Effects of overexpression of JA biosynthesis genes on nicotine accumulation in tobacco. Plant Direct 2, 1 11. doi.org/10.1002/pld3.36 202.

195) Zhou, J., Liu, D., Wang, P., Ma, X., Lin, W., Chen, S., Mishev, K., Lu, D., Kumar, R., Vanhoutte, I., He, P., Russinova, E., Shan, L. (2018) Regulation of Arabidopsis brassinosteroid receptor BRI1 endocytosis and degradation by the plant U-box PUB12/PUB13-mediated ubiquitination. Proceedings of National Academy of Sciences USA 115(8), E1906-E1915. doi: 10.1073/pnas.1712251115.


194) McMillan, L., Farah, R., Koh, J., Chen, S., Maupin-Furlow, J. (2018) Multiplex SILAC-based approach for quantitative analysis of differential proteome expression in Archaea. Environmental Microbiology 20, 385-401. doi:10.1111/1462-2920.14014.

193) Fountain, J.C., Koh, J., Yang, L., Bajaj, P., Pandey, M.K., Nayak, S.N., Chen, W., Zhuang, W., Chen, Z-Y., Kemerait, R.C., Chen, S., Varshney, R.K., Guo, B. (2018)


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Correlation of isolate-specific oxidative stress responses at the protein level in Aspergillus flavus with aflatoxin production capability. Scientific Reports 8, 3430. doi:10.1038/s41598-018-21653-x.

2017 Chen lab research projects 192) Geng, S.*, Yu, B.#, Zhu, N.#, Dufresne, C., Chen, S. (2017) Metabolomics and

proteomics of Brassica napus guard cells in response to low CO2. Frontiers in Molecular Biosciences-Metabolomics 4, 51. doi: 10.3389/fmolb.2017.00051.

191) Zhang, T §, Schneider, J.D.#, Zhu, N.#, Chen, S. (2017) Identification of MAPK substrates using quantitative phosphoproteomics. Methods in Molecular Biology ( ) 1578, 133-142. doi: 10.1007/978-1-4939-6859-6_10.

190) Mostafa, I.*, Yoo, M-J.§, Zhu, N.#, Geng, S.*, Dufresne, C., Abou-Hashem, M., El-Domiaty, M., Chen, S. (2017) Membrane proteomics of Arabidopsis glucosinolate mutants cyp79B2/B3 and myb28/29. Frontiers in Plant Science 8, 534.

189) Yin, Z.*, Balmant, K.*, Geng, S.*, Zhang, T.§, Dufresne, C., Dai, S., Chen, S. (2017) Bicarbonate induced redox proteome changes in Arabidopsis suspension cells. Frontiers in Plant Proteomics 8, 58. doi: 10.3389/fpls.2017.00058.

188) Zhu, M.§, Zhang, T.§, Ji, W.#, Geng, S.*, Silva-Sanchez, C.#, Song, W., Assmann, S.M., Harmon, A., Chen, S. (2017) Redox regulation of a guard cell SNF1-related protein kinase in Brassica napus, an oilseed crop. Biochemical Journal 474, 25852599. doi: 10.1042/BCJ20170070.


187) Yu, J., Jin, X., Sun, X., Gao, T., Chen, X., She, Y., Jiang, T., Chen, S., Dai, S. (2017) Hydrogen peroxide response in leaves of Poplar (Populus simonii × Populus nigra) revealed from physiological and proteomics analysis. International Journal of Molecular Sciences (IJMS) 18, 2085. doi:10.3390/ijms18102085

186) Suo, J., Zhao, Q., David, L., Chen, S., Dai, S. (2017) Salinity-responsive mechanism in chloroplasts: insights from gene characterization. International Journal of Molecular Sciences (IJMS) 18(5), 1011. doi:10.3390/ijms18051011

185) Ma, C., Wang, Y., Gu, D., Nan, J.D., Chen, S., Li, H. (2017) Overexpression of S-adenosyl-L-methionine synthetase 2 from Sugar beet M14 increased Arabidopsis tolerance to salt and oxidative stress. International Journal of Molecular Sciences (IJMS) 18(4), 847. doi:10.3390/ijms18040847

184) Wei, S., Bian, Y., Zhao, Q., Chen, S., Mao, J., Song, C., Cheng, K., Xiao, Z., Zhang, C., Ma, W., Zou, H., Ye, M., Dai, S. (2017) Salinity-induced palmella formation mechanism in halotolerant algae Dunaliella salina revealed by quantitative proteomics and phosphoproteomics. Frontiers in Plant Science 8, 810. doi: 10.3389/fpls.2017.00810.

183) Klee, S., Mostafa, I., Chen, S., Dufresne, C., Lehman, B.L., Sinn, J.P., Peter, K.A., McNellisa, T.W. (2017) An Erwinia amylovora yjeK mutant has numerous


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environmentally-dependent phenotypic and proteomic alterations. Molecular Plant Pathology doi: 10.1111/mpp.12650.

2016 Chen lab research projects 182) Chen, S. (2016) Development of redox proteomics technologies and application in

stomatal guard cell immunity. Journal of Proteins and Proteomics 7 (4), 41 (not peer-reviewed).

181) Geng, S., Misra, B.B., de Armas, E., Huhman, D.V., Alborn, H.T., Sumner, L.W., Chen, S. (2016) Jasmonate-mediated stomatal closure under elevated CO2 revealed by time-resolved metabolomics. The Plant Journal 88(6), 947-962. doi: 10.1111/tpj.13296.

180) Misra, B.B.§, Yin, Z., Geng, S., Armas, E.D., Chen, S. (2016) Metabolomic responses of Arabidopsis suspension cells to bicarbonate under light and dark conditions. Scientific Reports 6, 35778. doi: 10.1038/srep35778.

179) Lawrence, S. II, Parker, J.*, Chen, S (2016) Plant response to bacterial pathogens: A proteomics view. Agricultural Proteomics (G.H. Salekdeh ed.) 2, 203-225.

178) Libault, M., Chen, S., eds. (2016) E-Book: Plant Single Cell Type Systems Biology. Lausanne: Frontiers Media. doi: 10.3389/978-2-88919-948-8

177) Libault, M., Chen, S. (2016) Plant single cell type systems biology. Frontiers in Plant Science 7:35. doi: 10.3389/fpls.2016.00035

176) Mostafa, I.#, Zhu, N.#, Yoo, M.J.§, Balmant, K.M.*, Misra, B.B.§, Dufresne, C., Abou-Hashem, M., Chen, S., El-Domiaty, M. (2016) New nodes and edges in the glucosinolate molecular network revealed by proteomics and metabolomics of Arabidopsis myb28/29 and cyp79B2/B3. Journal of Proteomics 138, 1-19. doi: 10.1016/j.jprot.2016.02.012 (corresponding author).

175) Yoo, M-J., Ma, T., Zhu, N., Liu, L., Harmon, A.C., Wang, Q., Chen, S. (2016) Genome-wide identification and expression analysis of the SnRK2 genes in Brassica napus guard cells. Plant Molecular Biology 91(1), 211-227 (DOI: 10.1007/s11103-016-0456-9).

174) Misra, B.B.§, Armas, E.D., Chen, S. (2016) Differential metabolomic responses of PAMP-triggered immunity and effector-triggered immunity in Arabidopsis suspension cells. Metabolomics 12 (4), 1-15 doi: 10.1007/s11306-016-0984-y.

173) Zhang, T.*, Zhu, M.§, Zhu, N.#, Strul, J.M.**, Dufresne, C., Harmon, A.C., Chen, S. (2016) Identification of thioredoxin targets in guard cell enriched epidermal peels using cysTMT proteomics. Journal of Proteomics 133, 48-53 doi: 10.1016/j.jprot.2015.12.008

172) Zhu, M., Jeon, B.W., Geng, S.*, Yu, Y., Balmant, K.*, Chen, S., Assmann, S.M. (2016) Preparation of epidermal peels and guard cell protopalsts for cellular, electrophysiological, and omics assays of guard cell function. Methods in Molecular Biology 1363, 89-121 (doi: 10.1007/978-1-4939-3115-6_9).

171) Balmant, K., Zhang, T., Chen, S. (2016) Protein phosphorylation and redox modification in stomatal guard cells. Frontiers in Physiology 7:26. doi: 10.3389/fphys.2016.00026 (12 printed pages).


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170) Koh, J., Yoo, M-J., Soltis, D.E., Soltis, P.S., Chen, S. (2016) Comparative proteomics of the recently formed allopolyploids Tragopogon mirus and T. miscellus (Asteraceae). Journal of Proteins and Proteomics 7, 1001.

169) Yu, B., Li, J., Koh, J., Dufresne, C., Yang, N., Qi, S., Zhang, Y., Ma, C., Duong, B.V., Chen, S., Li, H. (2016) Quantitative proteomics and phosphoproteomics of sugar beet monosomic addition line M14 in response to salt stress. Journal of Proteomics 143, 286-297. doi: 10.1016/j.jprot.2016.04.011.

168) Liu, L., Liu, H., Li, S., Zhang, X., Zhang, M., Zhu, N., Dufresne, C.P., Chen, S., Wang, Q. (2016) Regulation of BZR1 in fruit ripening revealed by iTRAQ proteomics analysis. Nature Scientific Reports 6, 33635. doi: 10.1038/srep33635.

167) Feng, B., Ma, S., Chen, S., Zhu, N., Zhang, S., Yu, B., Yu, Y., Chen, X., Dinesh-Kumar, S.P., Shan, L., He, P. (2016) Proteome-wide identification of protein poly(ADP-ribosyl)ation targets reveals an important role of DAWDLE in Arabidopsis immunity. The EMBO Reports 17(12), 1799-1813.

166) Zhang, M., Koh, J., Liu, L., Shao, Z., Zhu, N., Dufresne, C.P., Chen, S., Wang, Q. (2016) Critical role of SlCOI1 dependent jasmonate pathway in AAL toxin induced PCD revealed by comparative proteomics. Nature Scientific Reports 6, 28451; doi: 10.1038/srep28451.

165) Wang, J., Yu, Q., Xiong, H., Wang, J., Chen, S., Yang, Z., Dai, S. (2016) Proteomic insight into the response of Arabidopsis chloroplasts to darkness. Plos One 11(5), e0154235. doi: 10.1371/journal.pone.0154235.

164) Ji, W., Li, S., Cong, R., Li, R., Qin, Z., Li, Y., Zhou, X., Chen, S., Li, J. (2016) Quantitative proteomics analysis 1 of soybean leaves and roots during the initial stage of salt stress. Frontiers in Plant Science 7, 573 (doi.org/10.3389/fpls.2016.00573)

163) Yu, J., Guo, H., Zhang, J., Zhao, Q., Liu, Y., Chen, S., Shi, L., Dai, S. (2016) The leaf color regulation mechanism in Chimera Hosta from proteomic analysis. International Journal of Molecular Sciences 17(3), 346. doi: 10.3390/ijms17030346.

162) Meng, X., Zhao, Q., Jin, Y., Yu, J., Yin, Z., Chen, S., Dai, S. (2016) Chilling-responsive mechanisms in halophyte Puccinellia tenuiflora seedlings revealed from proteomics analysis. Journal of Proteomics 143, 365-381

(http://dx.doi.org/10.1016/j.jprot.2016.04.038)

161) Soltis, D., Misra, B.B., Shan, S., Chen, S., Soltis, P. (2016) Polyploidy and the proteome. BBA - Proteins and Proteomics 1864(8), 896-907.

160) Goncalves, E., Koh, J., Zhu, N., Yoo, M-J., Chen, S., Matsuo, T., Rathiansabapathi, B. (2016) Nitrogen starvation-induced triacylglycerol accumulation in the green algae: Evidence for regulation by ROC40, a transcription factor known in circadian rhythm. The Plant Journal 85, 743-757.

159) Ji, W., Koh, J., Li, S., Zhu, N., Dufresne, C.P., Zhao, X., Chen, S., Li, J. (2016) Quantitative proteomics reveals an important role of GsCBRLK in salt stress response of soybean. Plant and Soil 402, 159 178.


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158) Dantuluti, S., Wu, Y., Hepowit, N., Chen, H., Chen, S., Maupin-Furlow, J. (2016) Proteome targets of ubiquitin-like samp1ylation are associated with sulfur metabolism and oxidative stress in Haloferax volcanii. Proteomics 16(7), 1100-1110. doi: 10.1002/pmic.201500153.


157) Zhao, Q., Suo, J., Chen, S., Jin, Y., Ma, X., Yin, Z., Zhang, Y., Wang, T., Luo, J., Jin, W., Zhou, Z., Dai, S. (2016) Na2CO3-responsive mechanisms in halophyte Puccinellia tenuiflora roots revealed by physiological and proteomic analyses. Nature Scientific Reports 6, 32717. doi: 10.1038/srep32717.

156) Fu, X., Liu, R., Sanchez, I., Silva-Sanchez, C., Hepowit, N.L., Cao, S., Chen, S., Maupin-Furlow, J. (2016) Ubiquitin-like proteasome system represents a eukaryotic-like pathway for targeted proteolysis in Archaea. mBio 7(2), e00379-16. (doi:10.1128/mBio.00379-16).

155) Chang, L-W., Fu, A., Chow, M., Silva-Sanchez, C., Chen, S., Hernandez, J.A., Jacobson, E.R. (2016) Prevelance of boid inclusion body disease, a survey of 130 blood samples using immune detection assays to detect specific antigen derived from nucleoprotein gene of golden gate virus. (to be submitted).

154) Massengill, M.T., Ashraf, H.M., Chang, E.I., Nguyen, M.D., Chowdhury, R.R., Islam, Y.F., Chrzanowski, S.M., Li, J., Karr, J., Warren, S.A., Walter, G., Zeng, H., Kang, B., Chen, S., Spinale, F.G., Moss, R.L., Kasahara, H. (2016) Adult-onset cardiac myosin light chain kinase (cMLCK) ablation results in acute heart failure with cardiomyocyte atrophy. PNAS USA (submitted).

153) Law, M.E., Ferreira, R.B., Davis, B.J., Higgins, P.J., Kim, J.S., Castellano, R.K., Chen, S., Luesch, H., Law, B.K. (2016) CUB domain-containing protein 1 and the epidermal growth factor receptor cooperate to induce cell detachment. Breast Cancer Research 18, 80.

2015 Chen lab research projects 152) Misra, B.B.§, Armas, E.D., Tong, Z., Chen, S. (2015) Metabolomic responses of

guard cells and mesophyll cells to bicarbonate. PLOS One 10(12), e0144206. doi:10.1371/journal.pone.0144206

151) Zhang, T., Chen, S., Harmon, A.C. (2015) Protein-protein interactions in plant MAP kinase cascades. Journal of Experimental Botany 67(3), 607-618. doi: 10.1093/jxb/erv508.

150) Balmant, K.M.*, Parker, J.*, Zhu, N.#, Dufresne, C., Chen, S. (2015) Redox proteomics of tomato in response to Pseudomonas syringae infection. Nature Horticulture Research 0, 15042; doi:10.1038/hortres.2015.43 (14 printed pages).

149) Misra, B.B.§, Acharya, B.R., Granot, D., Assmann, S.M., Chen, S. (2015) The guard cell metabolome: functions in stomatal movement and global food security. Frontiers in Plant Science 6, 334. doi: 10.3389/fpls.2015.00334.

148) Koh, J.#, Chen, G.#, Yoo, M.§, Zhu, N.#, Dufresne, D., Erickson, J.E., Shao, H., Chen, S. (2015) Comparative proteomic analysis of Brassica napus in response to drought stress. Journal of Proteome Research 14, 3068-3081. doi: 10.1021/pr501323d.


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147) Misra, B.B.§, Chen, S. (2015) Advances in understanding CO2 responsive plant metabolomes in the era of climate change. Metabolomics 11, 1478-1491.

146) Zhang, T.*, Zhu, M.#, Song, W., Harmon, A., Chen, S. (2015) Oxidation and phosphorylation of MAP kinase 4 causes protein aggregation. BBA - Proteins and Proteomics 1854, 156-165 (doi:10.1016/j.bbapap.2014.11.006).

145) Parker, J.*, Balmant, K.*, Zhu, F.**, Zhu, N.#, Chen, S. (2015) cysTMTRAQ - An integrated proteomics method for identification of thiol-based redox proteins. Molecular and Cellular Proteomics 14, 237-242 (doi: 10.1074/mcp.O114.041772).

144) Zhang, Y.T., Zhang, Y.L., Chen, S., Yin, G.H., Yang, Z., Lee, S., Liu, C.G., Zhao, D.D., Ma, Y.K., Song, F.Q., Bennett, J.W., Yang, F.S. (2015) Proteomics of methyl jasmonate induced defense in maize leaves against Asian corn borer. BMC Genomics (in press, MS: 1817473372144616).

143) Zhang, C., Pang, Q., Xue, M., Long, J., Chen, S., He, Y. (2015) Dihydroxyacid dehydratase is crucial for gametophyte development and the disruption causes increased susceptibility to salinity stress in Arabidopsis. Journal of Experimental Botany 66, 879-888 (doi: 10.1093/jxb/eru449) (co-correspondence).

142) Silva-Sanchez, C., Li, H., Chen, S. (2015) Recent advances and challenges in plant phosphoproteomics. Proteomics 15, 1127-1141 (doi: 10.1002/pmic. 201400410).


141) Dai, S., Pang, Q., Tian, Y., Chen, S., Yan, X. (2015) Proteomic analysis of Arabidopsis leaves subjected to mechanical wounding. Current Proteomics 12, 2 (13 printed pages). Doi: 10.2174/157016461202150903114607

140) Shao, H., Chen, S., Brestic, M. (2015) Environment-from physiology to genomics. Intl. J. Genomics 270736 (http://dx.doi.org/10.1155/2015/270736)

139) Zhao, Q., Suo, J., Gao, J., Wang, T., Chen, S., Dai, S. (2015) Cytological and proteomic analyses of horsetail (Equisetum arvense) spore germination. Frontiers in Plant Science 6, 441 (doi:10.3389/fpls.2015.00441)

138) Suo, J., Zhao, Q., Zhang, Z., Chen, S., Cao, J., Wei, X., Wang, T., Dai, S. (2015) Cytological and proteomic analyses of Osmunda cinnamomea L. var. asiatica spore germination. Molecular and Cellular Proteomcs 14(9), 2510-2534. doi: 10.1074/mcp.M114.047225.

137) Cahoon, R.E., Lutke, W.K., Cameron, J.C., Chen, S., Lee, S.G., Rivard, R.S., Rea, P.A., Jez, J. (2015) Counter-intuitive evolution of phytochelatin-based heavy metal tolerance. Journal of Biological Chemistry 290, 17321-17330 (pii: jbc.M115.652123).

136) Li, B., Jiang, S., Yu, X., Cheng, C., Chen, S., Chen, Y., Yuan, J.S., Jiang, D., He, P., Shan, L. (2015) Phosphorylation of a trihelix transcription repressor ASR3 by MPK4 negatively regulates Arabidopsis immunity. The Plant Cell 27, 839-856 (doi: 10.1105/tpc.114.134809).

135) Xue, M., Long, J., Jiang, Q., Wang, M., Chen, S., Pang, Q., He, Y. (2015) Distinct patterns of histone mark associated with recruitment of methionine chain-elongation


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pathway from leucine biosynthesis. Journal of Experimental Botany 66, 805-812 ( doi: 10.1093/jxb/eru440).

134) Li, H., Pan, Y., Zhang, Y., Wu, C., Ma, C., Yu, B.#, Zhu, N.#, Koh, J.#, Chen, S. (2015) Salt stress response of membrane proteome of sugar beet monosomic addition line M14. Journal of Proteomics 127, 18-33 (doi: 10.1016/j.jprot.2015.03.025).

133) Suo, J., Chen, S., Zhao, Q., Shi, L., Dai, S. (2015) Fern spore germination in response to environmental factors. Frontiers in Biology 10 (4), 358 376 (doi: 10.1007/s11515-015-1342-6).

132) Li, J., Silva-Sanchez, C., Zhang, T., Chen, S., Li., H. (2015) Phosphoproteomics technologies and applications in plant biology research. Frontiers in Plant Science 6, 430 (doi: 10.3389/fpls.2015.00430).


131) Hu, G., Koh, J.§, Yoo, M.J.§, Chen, S., Wendel, J.F. (2015) Gene-expression novelty in allopolyploid cotton: a proteomic perspective. Genetics 200 (1), 91-104. doi: 10.1534/genetics.115.174367.

130) Eade, C., Diaz, C., Chen, S., Cole, A., Cole, A. (2015) HIV-enhancing factors are secreted by reproductive epithelia upon inoculation with bacterial vaginosis-associated bacteria. Protein and Peptide Letters 22(8), 672-680.

129) Zheng, T., Pierre-Pierre, N., Yan, X., Huo, Q., Almodovar, A., Valerio, F., Rivera-Ramirez, I., Griffith, E., Decker, D., Chen, S., Zhu, N.# (2015) A gold nanoparticle-enabled blood test for early stage cancer detection and risk assessment. ACS Applied Materials and Interfaces 7, 6819-6827 (doi: 10.1021/acsami.5b00371).

2014 Chen lab research projects 128) Misra, B.B., Assmann, S.M., Chen, S. (2014) Plant single cell and single cell-type

metabolomics. Trends in Plant Science 19, 637-646 (invited review). 127) Yan, H.*, Yoo, M.J.§, Koh, J.§, Liu, L.*, Chen, Y.*, Acikgoz, D.**, Wang, Q., Chen, S.

(2014) Systems analysis of transcriptomic and metabolic reprograming of Arabidopsis in response to perturbation of jasmonate signaling. Journal of Proteome Research 13, 5751-5766.

126) Zhang, T., Chen, S., Harmon, A. (2014) Protein phosphorylation in stomatal movement. Plant Signaling & Behavior 9: 11, e972845 (doi: 10.4161/15592316.2014.972845).

125) Zhu, M.§, Zhu, N.#, Chen, Q., Song, W., Harmon, A., Assmann, S., Chen, S (2014) Thiol-based redox proteins in guard cell hormone signaling. The Plant Journal 78, 491-515.

124) Chen, S. (2014) Redox and phosphorylation regulated proteins in plant stomatal signaling. Journal of Proteins and Proteomics 5 (3), 65. (not peer-reviewed)



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123) Li, F., Cheng, C., Cui, F., De Oliveira, M.V., Intorne, A.C., Babilonia, K., Li, M., Chen, S., Metz, R., Johnson, C.D., Koiwa, H., Sun, W., Li, Z., de Souza Filho, G., Shan, L., He, P (2014) Pathogen-induced phosphorylation relay on RNA polymerase II orchestrates plant immunity. Cell Host and Microbe 16, 748-758 (doi: 10.1016/j.chom.2014.10.018).

122) Lin, W., Li, B., Chen, S., Zhu, N., He, P., Shan, L. (2014) Tyrosine phosphorylation of BAK1/BIK1 mediates Arabidopsis innate immunity. Proceedings of National Academy of Sciences 111, 3632-3637. doi: 10.1073/pnas.1318817111.

121) Li, H., Chen, S. (2014) Proteomics Studies on the proteome of sugarbeet line M14 (Book). Chemical Industry Press, Beijing, China.


120) Yang, L., Jiang, T., Fountain, J.C., Scully, B.T., Lee, R.D., Kemerait, R.C., Chen, S., Guo, B. (2014) Protein profiles reveal diverse drought-responsive signaling pathways in maize kernels. International Journal of Molecular Sciences 15, 18892-18918. DOI:10.3390/ijms151018892.

119) Parka, Y-J., Koh, J., Gaunaa, A.E., Chen, S., Cha, S. (2014) Identification of regulatory factors for mesenchymal stem cell-derived salivary epithelial precursors. Plos One 9 (11), e112158. DOI:10.1371/journal.pone.0112158.

118) Hu, G., Koh, J.§, Yoo, M.J.§, Pathak, D., Chen, S., Wendel, J.F. (2014) Cotton domestication and comparative evolutionary proteomics. Planta 40, 1237-1251. DOI 10.1007/s00425-014-2146-7.

117) Silva-Sanchez, C.§, Chen, S., Li, J., Chourey, P.S. (2014) A comparative glyco-proteome study of transfer cells-enriched basal endosperm in the hexose-deficient miniature1 (mn1) seed mutant and its wild type Mn1 in maize. Frontiers in Plant Science 5, 63. doi: 10.3389/fpls.2014.00063

2013 Chen lab research projects 116) Jin, X.§, Wang, R., Zhu M§, Jeon BW, Albert, R., Chen, S., Assmann, S. (2013)

Abscisic acid-responsive guard cell metabolomes of Arabidopsis wild-type and gpa1 G-protein mutants. The Plant Cell 25, 4789-4811.

115) Agrawal, G.K., Job, D., Kieselbach, T., Barkla, B.J., Chen, S., Deswal, R., Amalraj, R.S., Cramer, R., Weckwerth, W., Wienkoop, S., Ndimba, B.K., Tanou, G., Luthje, S., Dunn, M.J., Kim, S.T., Fukao, Y., Yonekura, M., Zolla, L., Rohila, J.S., Waditee-Sirisattha, R., Masi, A., Wang, T., Sarkar, A., Agrawal, R., Renaut, J., Rakwal, R.

(2013) INPPO actions and recognition as a driving force for progress in plant proteomics: change of guard, INPPO update, and upcoming activities. Proteomics 13, 3093-3100.

114) Chen, Y.*, Fei, M., Wang, Y., Chen, S., Yan, X. (2013) Proteomic investigation of glucosinolate systematically changes in Arabidopsis rosette leaves to exogenous methyl jasmonate. Plant Biosystems DOI: 10.1080/11263504.2013.819044.


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113) Parker, J.*, Koh, J.§, Yoo, M.§, Zhu, N.#, Feole, M.**, Yi, S.**, Chen, S. (2013) Quantitative proteomics of tomato defense against Pseudomonas syringae infection. Proteomics 13, 1934-1946.


112) Liu, L.*, Jia, C., Zhang, M., Chen, D., Chen, S., Guo, R., Guo, D., Wang, Q. (2013)

Ectopic expression of a BZR1-1D transcription factor in brassinosteroid signalling enhances carotenoid accumulation and fruit quality attributes in tomato. Plant Biotechnology Journal 1-11, doi: 10.1111/pbi.12121.

111) Yang, L.*, Zhang, Y. #, Zhu, N. #, Koh, J., Ma, C., Pan, Y.*, Yu, B., Li, H., Chen, S. (2013) Proteomic analysis of salt tolerance in Sugar beet monosomic addition line M14. Journal of Proteome Research 12, 4931-4950.

110) Tan, L., Chen, S., Wang, T., Dai, S. (2013) Proteomic insights into seed germination in response to environmental factors. Proteomics 13, 1850-1870.

109) Gray, J.W., Dittrich, A.C.N., Chen, S., Avila, J., Giavalisco, P., Devarenne, T. (2013) Two Pdk1 phosphorylation sites on the plant cell death suppressor Adi3 contribute to substrate phosphorylation. BBA - Proteins and Proteomics 1834, 1099-1106.

108) Zhao, Q., Zhang, H., Wang, T., Chen, S., Dai, S. (2013) Proteomics-based investigation of salt-responsive mechanisms in plant roots. Journal of Proteomics 82, 230-253.

107) Yu, J., Chen, S., Wang, T., Sun, G., Dai, S. (2013) Comparative proteomic analysis of Puccinellia tenuiflora leaves under Na2CO3 stress. International Journal of Molecular Sciences 14, 1740-1762.

106) Zhao, Q., Chen, S., Dai, S. (2013) C4 photosynthetic machinery: insights from maize chloroplast proteomics. Frontiers in Plant Science 4 (85) 1-6. doi: 10.3389/fpls.2013.00085.

105) Li, H., Ji, L., Ma, C., Wang, B., Liu, Y., Yu, B., Chen, S. (2013) Molecular cloning and characterization of a rat sarcoma-like protein from brain (Rab) gene in sugar beet monosomic additional line M14. Australian Journal of Crop Science 7, 374-380.

104) Wu, C.*, Ma, C., Pan, Y.*, Gong, S., Zhao, C., Chen, S., Li, H. (2013) Sugar beet M14 glyoxalase I gene can enhance plant tolerance to abiotic stresses. Journal of Plant Research 126, 415-425.


103) Keshavamurthy, R., Koh, J., Chen, S., Chalam, K.V. (2013) Quantitative proteomics of vitreous humor to identify potential markers involved in the induction of posterior vitreous detachment. Investigative Ophthalmology and Visual Science 54, 3306.

102) Torrazza, R.M., Li, N., Young, C., Kobeissy, F., Chow, M. #, Chen, S., Mai, V., Sharma, R., Hudak, M., Shuster, J., Neu, J. (2013) Pilot study using proteomics to identify predictive biomarkers of necrotizing enterocolitis from buccal swabs in very low birth weight infants. Neonatology 104, 234-242.


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101) Silva-Sanchez, C.§, Chen, S., Zhu, N.#, Li, Q.B., Chourey, P.S. (2013) Proteomic comparison of basal endosperm in Maize miniature1 mutant and its wild-type Mn1. Frontiers in Plant Physiology 4, 211. doi: 10.3389/fpls.2013.00211.

100) Hu, G., Koh, J.§, Yoo, M.J.§, Grupp, K., Chen, S., Wendel, J.F. (2013) Proteomic profiling of developing cotton fibers from wild and domesticated Gossypium barbadense. New Phytologist 200, 570-582.

99) Law, L.E., Corsino, P.E., Jahn, S.C., Davis, B.J., Chen, S., Patel, B., Pham, K., Lu, J., Sheppard, B., Nørgaard, P., Hong, J., Luesch, H., Law, B.J. (2013) Glucocorticoids and histone deacetylase inhibitors cooperate to block the invasiveness of basal-like breast cancer cells through novel mechanisms. Oncogene 32, 1316-1329. doi: 10.1038/onc.2012.138.

2012 Chen lab research projects 98) He, Y.*, Dai, S.#, Dufresne, C.P., Zhu, N.#, Pang, Q.*, Chen, S. (2012) Integrated

proteomics and metabolomics of Arabidopsis acclimation to gene-dosage dependent perturbation of isopropylmalate dehydrogenases. PLOS ONE 8(3): e57118. doi:10.1371/journal.pone.0057118.

97) Dai, S.#, Chen, S. (2012) Single-cell-type proteomics toward a holistic understanding of plant functions. Molecular and Cellular Proteomics 11, 1-9 (invited review).

96) Chen, S. (2012) Proteomic characterization of stomatal movement. Plant Science J. 30 (sup.), 12. (not peer-reviewed)

95) Zhu, M.*, Dai, S.#, Zhu, N.#, Booy, A., Simons, B., Yi, S.**, Chen, S. (2012) Methyl jasmonate responsive proteins in Brassica napus guard cells revealed by iTRAQ based quantitative proteomics. Journal of Proteome Research 11, 3728-3742.

94) Koh, J. §, Chen, S., Zhu, N.#, Yu, F., Soltis, P.S., Soltis, D.E. (2012) Comparative proteomics of the recently and recurrently formed natural allopolyploid Tragopogon mirus (Asteraceae) and its parents. New Phytologist 196, 292-305.

93) Dai, S.#, Chen, S. (2012) Information processing at the proteomics level. Springer Handbook of Bio- and Neuroinformatics (HBBNI), edited by Prof. Nikola Kasabov (Chapter 4, pp 57-72).

92) Zhu, N.#, Zhu, M.M.*, Dai, S.#, Zheng, R., Chen, S. (2012) Development of an improved isotope-coded affinity tag technology for thiol redox proteomics. Journal of Integrated-OMICS 2, 17-23.

91) Chen, Y.*, Pang, Q.*, He, Y.§, Zhu, N.#, Branstrom, I.**, Yan, X., Chen, S. (2012) Proteomics and metabolomics of Arabidopsis responses to perturbation of glucosinolate biosynthesis. Molecular Plant 5, 1138-1150. .

90) Zhu, M.*, Dai, S.#, Chen, S. (2012) The stomata frontline of plant interaction with the environment-perspectives from hormone regulation. Frontiers in Biology 7, 96-112.

89) Benskin, J.#, Chen, S. (2012) Proteomics in the classroom: an investigative study of proteins in microorganisms. The American Biology Teacher 74, 237 243.

88) Parker, J.*, Zhu, N., Zhu, M.*, Chen, S. (2012) Profiling thiol redox proteome using isotope tagging mass spectrometry. Journal of Visual Experiments 61, e3766 (doi:10.3791/3766).


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87) Agrawal, G.K., Sarkar, A., Agrawal, R., Ndimba, B.K., Tanou, G., Dunn, M.J., Kieselbach, T., Cramer, R., Wienkoop, S., Chen, S., Rafudeen, M.S., Deswal, R., Barkla, B.J., Weckwerth, W., Heazlewood, J.L., Renaut, J., Job, D., Rakwal, R. (2012) Boosting the globalization of plant proteomics through INPPO: current developments and future prospects. Proteomics 12, 359-368.


86) Gao, X., Chen, X., Lin, W., Chen, S., Lu, D., Niu, Y., Li, L., Cheng, C., McCormack, M., Sheen, J., Shan, L., He, P. (2012) Bifurcation of Arabidopsis NLR immune signaling via Ca2+-dependent protein kinases. PLOS Pathogens 9(1): e1003127. doi:10.1371/journal.ppat.1003127

85) Avila, J., Gregory, O.G., Su, D., Deeter, T.A., Chen, S., Silva-Sanchez, C. §, Xu, S., Martin, G.B., Devarenne, T.P. (2012) -subunit of the SnRK1 complex is phosphorylated by the plant cell death suppressor Adi3. Plant Physiology 159, 1277-1290.

84) Wang, Y.*, Ma, C., Wu, C., Gong, S., Chen, S., Li, H (2012) Cloning of a cystatin gene from sugar beet M14 that can enhance salt and drought tolerance of Arabidopsis seedlings. Plant Science 191-192, 93-99.

83) Yang, Le.*, Ma, C., Wang, L., Chen, S., Li, H. (2012) Salt stress induced proteome and transcriptome changes in sugar beet monosomic addition line M14. Journal of Plant Physiology 169, 839-850.

82) Pang, Q.*, Guo, J., Chen, S., Chen, Y.*, Zhang L., Fei, M., Jin, S., Li, M., Wang, Y., Yan, X. (2012) Effect of salt treatment on the glucosinolate-myrosinase system in Thellungiella salsuginea. Plant Soil 355, 363-374.

81) Zhang, H., Han, B., Wang, T., Chen, S., Li, H., Zhang, Y., Dai, S§. (2012) Mechanisms of plant salt response: insights from proteomics. Journal of Proteome Research 11, 49-67.

80) Jia, S., Pan, Y., Ma, C., Yu, B., Chen, S., Li, H. (2012) Physiological changes of sugar beet M14 in response to short-term salt stress. Journal of Natural Sciences of Heilongjiang University 3, 79-82.

79) Li, H., Wu, C., Cao, H.X., Yang, L., Ma, C., Yu, B., Chen, S. (2011) Establishment of a protein two-dimensional gel electrophoresis system for studying sugar beet M14 flower proteins. Journal of Natural Sciences of Heilongjiang University 28, 546-550.

78) Yu, J., Chen, S., Zhao, Q., Wang, T., Yang, C., Diaz, C. #, Sun, G., Dai, S§. (2011) Physiological and proteomic analysis of salinity tolerance in Puccinellia tenuiflora. Journal of Proteome Research 10, 3852-3870.


77) You, J., Lee, E., Bonilla, L., Francis, J., Koh, J. §, Block, J., Chen, S., Hansen, P.J. (2012) Treatment with the proteasome inhibitor MG132 during the end of oocyte maturation improves oocyte competence for development after fertilization in cattle. Plos One 7(11): e48613. doi:10.1371/journal.pone.0048613.


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76) Hepowit, N., Uthandi, S., Miranda, H.V., Toniutti, M., Olivarez, O., De Vera, S.M.S., Fanucci, G.E., Chen, S., Maupin-Furlow, J.A. (2012) Archaeal JAB1/MPN/MOV34 metalloenzyme (HvJAMM1) cleaves ubiquitin-like small archaeal modifier proteins (SAMPs) from protein-conjugates. Molecular Microbiology 86, 971-987.

2011 Chen lab research projects 75) He, Y.§, Galant, A., Pang, Q.*, Strul, J.M.**, Balogun, S.F., Jez, J.M., Chen, S. (2011)

Structural and functional evolution of isopropylmalate dehydrogenases in leucine and glucosinolate pathways of Arabidopsis thaliana. Journal of Biological Chemistry 286, 28794-28801.

74) Chen, Y.*, Yan, X., Chen, S. (2011) Bioinformatic analysis of molecular network of glucosinolate biosynthesis. Computational Biology and Chemistry 35, 10-18.

73) He, Y.*, Chen, L., Zhou, Y., Mawhinney, T.P., Chen, B.#, Kang, B-H., Hauser, B.A., Chen, S. (2011) Functional characterization of Arabidopsis isopropylmalate dehydrogenases reveals their important roles in gametophyte development. New Phytologist 189, 160-175.

72) Chen, Y.*, Pang, Q.*, Dai, S.§, Wang, Y., Chen, S., Yan, X. (2011) Proteomic identification of differentially expressed proteins in Arabidopsis in response to methyl jasmonate. Journal of Plant Physiology 168, 995-1008.

71) He, Y.*, Chen, B., Pang, Q.*, Strul J.M.**, Chen, S. (2010) Functional specification of Arabidopsis isopropylmalate isomerases in glucosinolate and leucine biosynthesis. Plant and Cell Physiology 51, 1480-1487.

70) Wang, Y., Li, H., Chen, S. (2010) Advances in quantitative proteomics. Frontiers in Biology 5, 195-203.


69) Ma, C., Wang, Y.*, Wang, Y.T., Wang, L., Chen, S., Li, H. (2011) Identification of a sugar beet BvM14-MADS box gene through differential gene expression analysis of monosomic addition line M14. Journal of Plant Physiology 168, 1980-1986.

68) Wang, X., Chen, S., Zhang, H., Shi, L., Cao, F., Guo, L., Xie, Y., Wang, T., Yan, X.#, Dai, S§. (2010) Desiccation tolerance mechanism in resurrection fern-ally Selaginella tamariscina revealed by physiological and proteomic analysis. Journal of Proteome Research 9, 6561-6577.

67) Han, B., Chen, S., Dai, S§., Yang, N., Wang, T. (2010) iTRAQ-based comparative proteomics reveals the features of plasma membrane-associated proteomes of pollen grains and pollen tubes from Lilium davidii Duch. Journal of Integrative Plant Biology 52, 1043-1058.

66) Pang, Q.*, Chen, S., Dai, S.§, Chen, Y., Wang, Y., Yan, X. (2010) Comparative proteomics of salt tolerance in Arabidopsis thaliana and Thellungiella halophila. Journal of Proteomics Research 9, 2584-2599.

65) Kang, S., Chen, S., Dai, S.§ (2010) Proteomics characteristics of rice leaves in response to environmental factors. Frontiers in Biology 5, 246-254 (cover).



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64) Muthukrishnan, G., Quinn, G.A., Lamers, R.P., Diaz, C., Cole, A.L., Chen, S., Cole, A.M. (2011) Exoproteome of Staphylococcus aureus reveals putative determinants of nasal carriage. Journal of Proteome Research 10, 2064-2078.

63) Knoll, J.E., Ramos, M.L., Zeng, Y., Holbrook, C., Chow, C. #, Chen, S., Maleki, S., Bhattacharya, A., Ozias-Akins, P. (2011) TILLING for allergen reduction and improvement of quality traits in peanut (Arachis hypogaea L.). BMC Plant Biology 11, 81 (doi:10.1186/1471-2229-11-81).

2010 Chen lab research projects 62) Zhu, M.*, Simons, B., Ning, Zhu.#, Oppenheimer, D.G., Chen, S. (2010) Analysis of

abscisic acid responsive proteins in Brassica napus guard cells by multiplexed isobaric tagging. Journal of Proteomics 73, 790-805.


61) Zhang, X., Chen, S., Mou, Z. (2010) Nuclear localization of NPR1 is required for regulation of salicylate tolerance, isochorismate synthase1 expression and salicylate accumulation in Arabidopsis. Journal of Plant Physiology 167, 144-148.

60) Humbard, M.A., Miranda, H.V., Lim, J.M, Krause, D.J., Pritz, J.R., Zhou, G., Chen, S., Wells, L., Maupin-Furlow, J.A. (2010) Ubiquitin-like Small Archaeal Modifier Proteins (SAMPs) and their conjugation to proteins in Haloferax volcanii. Nature 463, 54-60.

2009 Chen lab research projects 59) He, Y.*, Mawhinney, T.P., Preuss, M.L., Schroeder, A.C., Chen, B., Abraham, L., Jez,

J.M., Chen, S. (2009) A redox active isopropylmalate dehydrogenase functions in the biosynthesis of glucosinolates and leucine in Arabidopsis. Plant Journal 60, 679-690.

58) Alvarez, S.§, Zhu, M.*, Chen, S. (2009) Proteomics of Arabidopsis redox proteins in response to methyl jasmonate. Journal of Proteomics 73, 30-40.

57) Pang, Q.Y.*, Chen, S., Li, L., Yan, X. (2008) Characterization of glucosinolate-myrosinase system in developing salt cress Thellungiella halophila. Physiologia Plantarum 136, 1-9.

56) Alvarez, S.§, Wilson, G.H.**, Chen, S. (2009) Proteomic analysis of in vivo redox regulated proteins in Arabidopsis. Journal of Chromatography B 877, 101-104.

55) Zhu, M.*, Dai, S., McClung, S., Yan, X.#, Chen, S. (2009) Functional differentiation of Brassica napus guard cells and mesophyll cells revealed by comparative proteomics. Molecular and Cellular Proteomics 8, 752 - 766 (cover).


54) Ren, H., Zhong, H., Dai, S., Chen S., Yan, X. (2009) Water stress on glucosinolate contents in Arabidopsis rosette leaves. Acta Ecologica Sinica 29, 4372-4379.


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53) Tian, X., Dai, S., Chen S., Yan, X. (2009) Effect of mechanical wounding on glucosinolate content and composition in Arabidopsis thaliana. Acta Ecologica Sinica 29, 1647-1654.

52) Li, H., Cao, H., Wang, Y., Pang, Q.Y.*, Ma, C., Chen, S. (2009) Proteomic analysis of sugar beet apomictic monosomic addition line M14. Journal of Proteomics 73, 297-308.

51) Raichaudhuri, A., Peng, M., Naponelli, V., Chen, S., Sánchez-Fernández, R., Gu, H., Gregory III, J.F., Hanson, A.D., Rea, P.A. (2009) Plant vacuolar ABA transporters that translocate folates and antifolates in vitro and confer antifolate tolerance in vivo. Journal of Biological Chemistry 284, 8449 - 8460.


50) Paul, A.L., Liu, L., McClung, S., Laughner, B., Chen, S., Ferl, R.J. (2008) Comparative interactomics: analysis of arabidopsis in vivo 14-3-3 complexes reveals highly conserved 14-3-3 interactions between humans and plants. Journal of Proteome Research 8, 1913-1924.

49) Low, J.M., Chauhan, A.K., Gibson, D.S., Zhu, M.*, Chen, S., Rooney, M.E., Moore, T.L. (2009) Proteomic analysis of circulating immune complexes in juvenile idiopathic arthritis reveals disease-associated proteins. Proteomics-clinical applications 3, 829-840.

2008 Chen lab research projects 48) Alvarez, S. §, He, Y.*, Chen, S. (2008) Comparative investigations of glucosinolate-

myrosinase system in Arabidopsis suspension cells and hypocotyls. Plant Cell and Physiology 49, 324-333.


47) Xin, Y., Dai, S. §, Chen, S., Yan, X. (2008) Effect of NaCl stress on glucosinolate content in rosette leaves of Arabidopsis thaliana. Journal of Northeast Forestry University 36, 51-52.

46) Chen, Y.*, Chen S., Yan, X. (2008) Effect of environment on glucosinolate metabolism in plant. Acta Ecologica Sinica 28, 2829-2834.

45) Li, Q., Dai, S. §, Chen, S., Yan, X. (2008) Analysis of glucosinolate composition and content in radish. Acta Horticulturae Sinica 35, 1205-1208.

44) Li, Q., Dai, S. §, Chen, S., Yan, X. (2008) Effect of nitrogen supply on content of glucosinolates in radish sprouts. Journal of Natural Science of Heilongjiang University 25, 385-388.

43) Li, Y., Chen, S., Yan, X. (2008) Biosynthesis of camalexin in plant. Plant Physiology Communications 44, 763-768.

2007 Chen lab research projects


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42) Dai, S., Yan, X.F., Chen, S. (2007) Proteomics of pollen development and germination. Journal of Proteome Research 6, 4556-4563.

41) Yan, X.F., Chen, S. (2007) Regulation of plant glucosinolate metabolism. Planta 226, 1343-1352.


40) Zhu, J., Alvarez, S., Marsh, E., LeNoble, M.E., Cho, I.J., Sivaguru, M., Chen, S., Nguyen, H.T., Wu, Y., Schachtman, D., Sharp, R.E. (2007) Changes in the Cell Wall Proteome in the Maize Primary Root in response to water deficit. II. Region-Specific Changes in the Water Soluble and Lightly Ionically-Bound Proteins. Plant Physiology 145, 1533-1548.

39) Jez, J.M., Schachtman, D.P., Berg, R.H., Taylor, C.G., Chen, S., Hicks, L.M., Jaworski, J.G., Smith, T.J., Nielsen, E., Pikaard, C.S. (2007) Developing a new interdisciplinary lab course for undergraduate and graduate students: Plant Cells and Proteins. Biochemistry and Molecular Biology Education 35, 410-415.

38) Chen, S., Sánchez Fernández, R., Lyver, E.R., Dancis, A., Rea, P.A. (2007) Functional half molecule ABC transporters from Arabidopsis thaliana: The ATM subfamily. Journal of Biological Chemistry 282, 21561-21571.

37) Sarry, J., Chen, S., Collum, R., Liang, S., Peng, M., Lang, A., Yuan, C., Hippler, M., Rea P. (2007) Analysis of the vacuolar luminal proteome of yeast Saccharomyces cerevisiae. FEBS Journal 274, 4287-4305.

2006 Chen lab research projects 36) Chen, S., Harmon, A. (2006) Advances in plant proteomics. Proteomics 6, 5504-

5516.

PUBLICATIONS PRIOR TO UNIVERSITY OF FLORIDA 35) Sheffield, J. #, Taylor, N., Fauquet, C., Chen, S. (2006) Cassava root proteome:

protein identification and differential expression. Proteomics 6, 1588-1598 (Cover). 34) Alvarez, S.§, Goodger, J., Marsh, E., Chen, S., Schachtman, D.P. (2006) The

proteome of maize xylem sap and changes after drought stress. Journal of Proteome Research. 5, 963-972.

33) Chen, S. (2006) Rapid protein identification using direct infusion nanoelectrospray ionization mass spectrometry. Proteomics 6, 16-25.

32) Zhu, J., Chen, S., Asirvatham, V. §, Schachtman, D.P., Wu, Y., Sharp, R.E. (2006) Cell wall proteome in the maize primary root elongation zone. I. Extraction and identification of water soluble and lightly ionically-bound proteins. Plant Physiology 140, 311-325.

31) Herman, E.M., Rotter, K., Premakumar, R., Elwinger, G., Bae, R., King, L.E., Chen, S., Livingston, D.P. (2006) Additional freeze hardiness in wheat acquired by exposure to -3 oC is correlated with changes in physiology, structure, transcriptome and proteome. Journal of Experimental Botany 57, 3601-3618.


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30) Chen, S. (2006) High throughput protein separation and mass spectrometry characterization. In Plant Biotechnology Application Guide, chapter 9. Chemical Industry Press, pp. 143-160.

29) Yan, X., Wang, Y., Zhang, Y., Yu, T., Ma, M., Ju, S., Chen, S. (2005) Tissue-specific and environmental regulation of camptothecin and 10-hydroxycamptothecin levels in Camptotheca acuminate. Bot. Bull. Acad. Sin. 46, 325-331.

28) Jez, J., Cahoon, B., Chen, S. (2004) Arabidopsis thaliana glutamate-cysteine ligase: Functional properties, kinetic mechanism and regulation of activity. Journal of Biological Chemistry 279, 33463-33470.

27) Maathuis, F.J.M., Filatov, V., Herzyk, P., Krijger, G.C., Axelsen, K.B., Chen, S., Green, B.J., Li, Y., Madagan, K.L., Sánchez-Fernández, R., Forde, B.J., Palmgren, M.G., Rea, P.A., Williams, L.E., Sanders, D., Amtmann, A. (2003) Transcriptome analysis of root transporters reveals participation of multiple gene families in the response to cation stress. Plant Journal 35, 675-692.

26) Rea, P.A., Sanchez-Fernandez, R., Chen, S., Peng, M., Klein, M., Geisler, M., Martinoia, E. (2003) Plant ABC Transporters. In: Book ABC transporters from bacteria to humans, SP Cole, K Kuchler, C Higgins, B Holland (eds), Academic Press, UK pp.335-356.

25) Chen, S., Glawishnig, E., Jorgensen, K., Naur, P., Jorgensen, B., Olsen, C.E., Rasmussen, H., Pickett, J.A., Halkier, B.A. (2003) CYP79F1 and CYP79F2 have distinct functions in the biosynthesis of aliphatic glucosinolates in Arabidopsis. Plant Journal 33, 923-937.

24) Petersen, B.L., Chen, S., Hansen, C., Halkier, B.A. (2002) Composition and content of glucosinolates in developing Arabidopsis thaliana. Planta 214, 562-571.

23) Chen, S., Andereason, E. (2001) Update on glucosinolate metabolism and transport. Plant Physiology and Biochemistry 39, 743-758 (Cover).

22) Chen, S., Petersen, B.L., Olsen, C.E., Shulz, A., Halkier, B.A. (2001) Glucosinolate uptake and long-distance transport in Arabidopsis thaliana. Plant Physiology 127, 194-201.

21) Chen, S., Halkier, B.A. (2000) In vivo synthesis and purification of radioactive p-hydroxybenzylglucosinolate in sinapis alba. Phytochemical Analysis 11, 174-178.

20) Wittstock, U., Chen, S., Halkier, B.A. (2000) Expression cloning of plasma membrane transporter proteins by screening for uptake of radiolabelled substrates. Journal of Experimental Botany 51, 955-960.

19) Chen, S., Halkier, B.A. (2000) Characterization of glucosinolate transporter in Brassica napus leaf cells. Journal of Biological Chemistry 275, 22955-22960. 18) Chen, S., Schopfer, P. (1999) Hydroxyl radical production in physiological reactions

- a novel function of peroxidase. European Journal of Biochemistry 260, 726-735. 17) Chen, S., Halkier, B.A. (1999) Functional Expression and Characterization of

Brassica napus Myr1 myrosinase in Saccharomyces cerevisiae. Protein Expression and Purification 17, 414-420.

GRADUATE AND UNDERGRADUATE WORK 16) Chen, S., Li, L., Jiao, X.Z. (1998) Effect of osmotic shock on protein

phosphorylation in Dunaliella salina cells. Journal of Integrative Plant Biology (Acta Botanica Sinica) 40, 126-131.


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15) Jiao, X.Z., Chen, S. (1998) The plasma membrane transport systems of higher plants. In Yu SW, Tang ZC eds, Plant Physiology & Molecular Biology, 2nd edition. Science Publisher, Beijing. Chapter 21. pp. 320-335.

14) Chen, S., Li, L., Yen, C.C., Xu, Z.K., Jiao, X.Z. (1997) Inositol phospholipid signal transduction system in Dunaliella salina and its function in osmotic shock. Chinese Science 42, 151-155.

13) Chen, S., Yen, C.C., Jiao, X.Z. (1996) Plant plasmalemma Transport Systems and osmotic shock signal transduction. Doctoral Dissertation at Shanghai Institute of Plant Physiology, Chinese Academy of Sciences and East China Normal University.

12) Li, L., Chen, S., Jiao, X.Z. (1996) Application of flow cytometry in plant biology research. Plant Physiology Communications 32, 441-443.

11) Huang, X.H., Chen, S, Yen, C.C. (1996) Study on the plant cell wall receptors of Agrobacterium rhizogenes. Journal of East China Normal University 1, 95-100.

10) Chen, S., Li, L., Yen, C.C., Jiao, X.Z. (1996) Relationship of plasmalemma redox activity to K+ uptake by Dunaliella salina cells. Journal of Integrative Plant Biology (Acta Botanica Sinica) 38, 295-301.

9) Chen, S., Li, L., Yen, C.C., Jiao, X.Z. (1996) The Plasmalemma redox system in unicellular alga Dunaliella salina. Acta Phytophysiologica Sinica 22, 197-203.

8) Chen, S., Yen, C.C., Jiao, X.Z. (1996) Effect of osmotic shock on the redox system in the plasma membrane of Dunaliella salina. Cell Research 1996, 6, 31-38.

7) Chen, S., Huang, X.H., Yen, C.C. (1995) The ion effect in attachment of Agrobacterium rhizogenes to plant cells. Acta Biologiae Experimentalis Sinica 28, 215-225.

6) Chen, S. (1995) Advances in the study of agrobacterium attachment to the receptors in plant cell wall. Journal of Biology 5, 12-14.

5) Chen, S., Jiao, X.Z. (1995) Physiological functions of plasmalemma redox system. Life Sciences 7, 24-32.

4) Chen, S., Jiao, X.Z. (1994) Inositol phospholipid signal transduction system in plant cells. Plant Physiology Communications 30, 405-413.

3) Chen, S. (1993) The interaction between Agrobacteria and plants. Biology Bulletin 3, 13.

2) Chen, S., Li, H.Q. (1993) Recent advancement in the research of the transformation of monocotyledon mediated by Agrobacteria. BioTechnology 3, 1-5.

1) Du, A.Z., Chen, S., Li, Y.L. (1992) Study on beverages of Schisandra chinensis bail. Journal of Harbin Normal Univ. 8, 85-88.

DATABANK SUBMISSIONS 9) He, Y., Galant, A., Pang, Q., Strul, J.M., Balogun, S., Jez, J.M., Chen, S. (2011)

Structure of 3-isopropylmalate dehydrogenase isoform 2 from Arabidopsis thaliana at 2.2 angstrom resolution. Protein Data Bank nummber 3R8W. Database entry.

8) Zhu, M., Ebert,K.S., Chen,S. (2010) Molecular cloning of a mitogen-activated protein kinase 4 from Brassica napus var. Global. GenBank accession number 1363832. Database entry.

7) Zhu, M., Chen,S. (2010) Molecular cloning of a serine/threonine protein kinase (SRK2E) from Brassica napus var. Global. GenBank accession number HM563040. Database entry.


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6) Zhu, M., Chen,S. (2010) Molecular cloning of a myrosinase MYR1 from Brassica napus var. Global. GenBank accession number 1363815. Database entry.

5) Zhu, M., Chen,S. (2010) Molecular cloning of a myrosinase MYR2 from Brassica napus var. Global. GenBank accession number 1363824. Database entry.

4) Chen,S., Sanchez-Fernandez,R., Peng,M. and Rea,P.A. (2002) AtTAP2, a putative ATP-energized peptide transporter. GenBank accession number AY078410.

3) Chen,S., Sanchez-Fernandez,R., Peng,M. and Rea,P.A. (2002) AtTAP1, a putative ATP-energized peptide transporter. GenBank accession number AY078409.

2) Chen, S., Halkier, B. (2000) Cytochrome P450 CYP79F2 in the biosynthesis of aliphatic glucosinolates in Arabidopsis. GenBank accession number AF275259.

1) Chen, S., Halkier, B. (2000) Cytochrome P450 CYP79F1 in the biosynthesis of aliphatic glucosinolates in Arabidopsis. GenBank accession number NM_101507.

INVITED SEMINARS AND LECTURES 170) Mass spectrometry technologies for multi-omics biomedical research. International

Conference of the Genetics Society of Korea 2021, Seoul National University Siheung Campus, Seoul, South Korea, October 20-21, 2021

169) Single-cell type proteomics of common ice plants in transition from C3 to CAM. 7th International Caparica Conference on Analytical Proteomics 2021, Caparica, Portugal, July 12-15, 2021.

168) Proteomics and mass spectrometry applications in biomedical research. University of Florida Health Cancer Center, May 28, 2021.

167) A role of lipid transfer protein in plant defense revealed by redox proteomics. The 82nd American Society of Plant Biologists Southern Section Annual Conference, virtual zoom, April 16 -18, 2021.

166) Systems biology of stomatal disease triangle and CO2 response. Department of Biological Sciences at Northern Illinois University, virtual zoom, April 6, 2021.

165) Proteomics and mass spectrometry for big impact. Interdisciplinary Center for Biotechnology Research Retreat, Straughn Center, Gainesville, FL, USA, November 4, 2020.

164) Single-cell type proteomics and metabolomics of guard cell immunity and CO2 response. 2nd International Conference on Plant Science and Research (virtual zoom conference). Chiang Mai, Thailand, November 2 - 3, 2020.

163) Single cell-type metabolomics revealed a novel high CO2 signaling pathway. Association of Biomolecular Resource Facilities (ABRF) Education Workshop on Single- via Zoom, October 22, 2020.

actome and guard cell CO2 signaling. 2020 Keynote for summer graduate school of Harbin Normal University, China (via Zoom), August 15, 2020.

161) Understanding CAM photosynthesis toward growing crops in the desert. 2020 Southeast SACNAS Regional Conference, Gainesville, Florida, USA, February 28 - 29, 2020.

160) Understanding stomatal disease triangle through molecular networks. Microbiology and Cell Science, University of Florida, USA, February 14, 2020.


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159) Metabolomics insight into how plants respond to CO2 changes. Metabolon Lunch and Learn Seminar, University of Florida Genetics Institute, Gainesville, Florida, USA, December 5, 2019.

158) : insights into MPK4 complexes and CO2 response. State Key Laboratory of Tree Genetics and Breeding, Harbin, China, November 20, 2019.

157) Guard cell proteomics and metabolomics revealed MPK4 complexes and CO2 response. College of Biological Sciences and Biotechnology, Shanghai Jiaotong University, Shanghai, China, November 11, 2019.

156) Single cell type proteomics and metabolomics: new insights into guard cell immunity and CO2 responses. Florida Genetics Symposium, Gainesville, FL, USA, November 4-5, 2019.

155) Elucidation of MPK4 phosphorylation dynamics and interacting proteins. College of Biomedical Engineering and Instrument Science, Zhejiang University, Hangzhou, China, October 31, 2019.

154) Plant single-cell type omics revealed new insights into guard cell immunity and CO2 response. Single-cell biology symposium, Joint Center for Single Cell Biology, Shanghai Jiaotong University, Shanghai, China, October 27, 2019.

153) Quantitative proteomics of MPK4 interacting proteins and new substrate identification. Departmental seminar at Department of Molecular Sciences at Macquarie University, North Ryde, NSW 2109, Australia. September 20th, 2019.

152) Molecular changes in the course of ice plant C3 to CAM transition revealed by proteomics and metabolomics. HUPO 18th Annual World Congress (HUPO 2019) in Adelaide, Australia, September 15-18th, 2019.

151) MPK4 phosphorylation dynamics and interacting proteins. Flash Talk at American Society for Biochemistry and Molecular Biology (ASBMB) 2019 Mass Spectrometry in the Health and Life Sciences, San Francisco, CA, USA, August 20, 2019.

150) Entomology and Nematology Department, University of Florida, Gainesville, Florida, August 1, 2019.

149) A new redox proteomics technology reveals role of a lipid transfer protein in stomatal defense. The 30th International Conference on Arabidopsis Research, Wuhan, China, June 16-21, 2019.

148) Systems biology and synthetic biology. College of Life and Environmental Sciences, Shanghai Normal University, Shanghai, China, June 14, 2019.

147) Redox proteomics and metabolomics of guard cell immunity and CO2 response. Westlake University, Hangzhou, China, June 12, 2019.

146) of stomatal guard cell functions. College of Biomedical Engineering and Instrument Science, Zhejiang University, Hangzhou, China, June 10, 2019.

145) Molecular switches regulating plant C3 to CAM transition using integrative transcriptomics, proteomics and metabolomics. 67th American Society for Mass Spectrometry Annual Conference, Atlanta, GA, USA, June 2-6, 2019.

144) Proteomics applications: MPK4 interactome and function. Toxicogenomics lecture series, College of Veterinary Medicine, University of Florida, Gainesville, Florida, January 17, 2019.

143) Omics of stomatal immunity and CO2 response. Northeast Agricultural University, College of Life Sciences, Harbin, China, November 16, 2018.


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142) Applications of quantitative proteomics and posttranslational modification proteomics in plant biology research. Heilongjiang University, Sunshine Lecture Series, Harbin, China, November 12, 2018.

141) Investigation of stomatal immunity and CO2 response. The 7th National Proteomics Conference and the 5th Conference of Asia Oceania Agricultural Proteomics Organization (AOAPO), Jinan city, China, November 2-5, 2018.

142) Utilizing the plant factory for phytoremediation and human health. College of Environment and Natural Resources, Zhejiang University, Hangzhou, China, October 30, 2018.

141) Systems biology of the plant biochemical factory for human health. College of Biomedical Engineering and Instrument Science, Zhejiang University, Hangzhou, China, October 29, 2018.

140) Redox proteomics of stomatal immunity reveals role of a lipid transfer protein in plant defense. SciX 2018, Atlanta, Georgia, USA, October 21-26, 2018.

139) Path to a successful academic career. HUPO Early Career Research (ECR) Initiative-The Mentoring Day, HUPO 17th Annual World Congress (HUPO 2018) in Orlando, Florida, USA, September 30th, 2018.

138) MPK4 interacting proteins in crop immunity response. 17th Human Proteome Organization World Congress (HUPO 2018), Orlando, Florida, USA, September 30-October 3, 2018.

137) Hyphenated metabolomics tools and applications in stomatal guard cell signaling. 1st Annual North American Mass Spectrometry Summer School, University of Wisconsin, Madison, Wisconsin, USA, August 6-9 2018.

136) Omics of guard cell immunity and CO2 responses. Keynote of Summer REU Research Presentation Event, Florida Agricultural and Mechanical University (FAMU). Tallahassee, Florida, USA, August 1, 2018.

135) MPK4 phosphorylation dynamics and MPK4 interacting proteins in plant immunity. College of Life and Environmental Sciences, Shanghai Normal University, Shanghai, China, June 26, 2018.

134) Proteomics and metabolomics informatics challenges and future. The future of Arabidopsis Informatics, St. Louis, Missouri, USA, May 2-4 2018.

133) Omics characterization of guard cell immunity and CO2 response. Department of Biological Sciences, University of North Carolina, Charlotte, North Carolina, USA, April 26-28, 2018.

132) Hyphenated Metabolomics of Stomatal Guard Cell Responses to CO2 in the Changing Climate. 255th American Chemical Society National Meeting & Exposition, New Orleans, LA, USA, March 18-22, 2018.

131) Discovering novel metabolite and protein functions in guard cells toward increasing plant productivity. The State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, China, December 22, 2017.

130) - from glucosinolate metabolism to stomatal defense. Department of Horticultural Sciences, University of Florida, Gainesville, Florida, USA, November 13, 2017.

129) Discovering novel protein functions in stomatal immunity toward increasing crop productivity. The 1st International Proteomics Conference 2017 and the 4th


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Conference of Asia Oceania Agricultural Proteomics Organization (AOAPO), Kuala Lumpur, Malaysia, August 15-18, 2017.

128) Studying plant guard cell immunity and CO2 response using redox proteomics. College of Horticultural Sciences, Shenyang Agricultural University, Shenyang, China, August 7, 2017.

127) Modern mass spectrometry applications in the analysis of proteins and co-Products. Institute of Agricultural Sciences of Zhejiang Province, Hangzhou, China, July 31, 2017.

126) Metabolomic changes of stomatal responses to CO2 in the changing climate. 2017 International Botany Conference (IBC), Shenzhen, China, July 23-29, 2017.

125) Mass spectrometry and omics science for high school students and teachers. High School Teachers Hands-on Workshop, Summer Science institute, University of Florida Genetics Institute, Gainesville, Florida, June 26-27, 2017.

124) Discovery and characterization of redox switches. Department of Biology Seminar Series, Florida Agricultural and Mechanical University (FAMU). Tallahassee, Florida, USA, June 15, 2017.

123) Hands-on training approaches for high school students and graduate students, including URMs, in proteomics and metabolomics. Workshop on Training and Education for Plant Biology: Emerging 'Omics Technologies, Big Questions in Plant Biology, and Diverse Careers, invited by the North American Arabidopsis Steering Committee (NAASC) Workshop/Focus Group. Santa Fe, New Mexico, USA, February 24-26, 2017.

122) T facility. Workshop on Training and Education for Plant Biology: Emerging 'Omics Technologies, Big Questions in Plant Biology, and Diverse Careers. Santa Fe, New Mexico, USA, February 24-26, 2017.

121) Redox proteomics technologies and the application in plant defense. 8th Annual meeting of Proteomic Society, India; 8th International Symposium on Frontiers in Agricultural Proteome Research and 3rd meeting of Asia Oceania Agricultural

Proteomics: Application in Food and Health. New Delhi, India, Depcember 13-17, 2016.

121) Quantitative Metabolomics Application for Plants Using Mass Spectrometry. National Institute of Plant Genomics Research, New Delhi, India, Depcember 10, 2016.

119) Understanding plant stomatal movement toward increasing crop productivity. Indo-US Technology Forum in Proteomics, New Delhi, India, Depcember 11-12, 2016.

118) Elucidation of stomatal metabolomic responses to carbon dioxide. Department of Biology, University of South Carolina, Columbia, SC, November 14, 2016.

117) Proteomics technologies and the applications in plant stomatal immunity against pathogens. Department of Plant Pathology, University of Florida, Gainesville, FL, November 8, 2016.

116) Proteomics of the proteotype the missing link between genotype and phenotype. Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL, September 21, 2016.

115) Redox proteomics of plant first line of defense. 2016 Annual Chinese Biotechnology Conference, Harbin, China, August 10-12, 2016.


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114) Toward Systems Biology of Glucosinolate Metabolic Networks, Medicinal Plant Symposium of Silk Road Countries, Hangzhou, China, August 5-7, 2016.

113) Redox proteomics of stomatal immunity against pathogens. 2016 Shanghai International Proteomics Symposium, Development Center of Plant Germplasm Resources, Shanghai Normal University, Shanghai, China, July 20, 2016.

112) Redox proteomics of plant stomatal immunity against pathogens. 6th International Conference & Expo on Proteomics March 29-31, 2016 Atlanta, Georgia, USA.

111) Metabolomics of abscisic acid and CO2 responses in plant stomatal guard cells. International organization committee, International Conference on Plant Genes and

10-12, 2016. 110) Proteomics and metabolomics of stomatal defense and glucosinolate metabolism.

Center for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, NE, USA, November 17-18, 2015.

109) Redox proteomics of plant stomatal immunity against pathogens. The 7th International Symposium on Frontiers in Agricultural Proteome Research, and the 2nd AOAPO conference, Goesan-gun, Chungcheongbuk-do, Korea, September 23-24, 2015.

108) Elucidation of glucosinolate metabolism and stomatal regulation. Biological, Environmental & Climate Sciences Department, Brookhaven National Laboratory, U.S. Department of Energy, Upton, NY, USA, September 17-18, 2015.

107) Towards systems biology of stomatal defense and glucosinolate metabolism. Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, USA, August 24, 2015.

106) Systems biology of stomatal defense and glucosinolate metabolism. College of Biological Sciences, Shanghai Normal University, Shanghai, China, June 08, 2015.

105) Unraveling the molecular basis of CO2 effect on stomatal movement. 20th Penn State Plant Biology Symposium Plant Stress-Omics in a Changing Climate, College Park, PA, USA, May 13-16, 2015.

104) Mass spectrometry of proteome and biomarkers for food and agricultural applications. 106th (AOCS) Annual Meeting and Industry Showcases, Orlando, USA, May 3-6, 2015.

103) Experimental design, sample preparation and challenges in proteomics and metabolomics. Annual Meeting of the Association of Biomolecular Resource Facilities (ABRF). St. Louis, MO, March 28-31, 2015

102) Understanding plant metabolism and defense through proteomics and metabolomics. Monsanto Company, Chesterfield, St. Louis, MO, March 27, 2015.

101) Application of gel based proteomics to study plant stress responses. 6th Annual International Conference of Proteomics Society India-Post-conference Gel-based Proteomics Workshop, Bombay, India, December 10-11, 2014.

100) Redox and phosphorylation/dephosphorylation switches in plant stomatal signaling. 6th Annual International Conference of Proteomics Society India

-9, 2014. 99) Data independent acquisition proteomics. Indo-US Science and Technology Forum.

Indian Institute of Technology, Mumbai, India, December 6, 2014.


57

98) Proteomics of salt stress and guard cell signaling - examples of gel-based and LC-based proteomics approaches. Heilongjiang Proteomics Society Annual Conference, Harbin, China, October 24, 2014

97) Challenges and promises of plant biotechnology. Sunshine Stage Lecture, Heilongjiang University, Harbin, China, October 21, 2014

96) Proteomics applications in Horticulture Sciences an example in tomato disease resistance. National Horticulture Conference, Nanjing, China, October 15-18, 2014.

95) Understanding the molecular processes of plant defense through proteomics and metabolomics. Department of Plant Pathology, University of Florida, Gainesville, FL, October 7, 2014.

94) Modern analytical technologies in molecular network research. The 6th Symposium of Science, Engineering and Biomedicine. Daytona Beach, Florida August 29-31, 2014.

93) Proteomics and mass spectrometry. Florida Core Network Conference, Gainesville, FL, August 15, 2014.

92) Redox proteomics approaches to investigate stomatal hormone signaling. H. Lee Moffitt Cancer Center & Research Institute, Tampa, FL, July 28, 2014.

91) Application of redox proteomics approaches in biomedical research. 3rd Annual Conference on Functional Biology Research, Tallahassee, FL, July 24, 2014.

90) Redox proteomics of guard cell hormone signaling. The 6th International Symposium on Frontiers in Agricultural Proteome Research, the 1st AOAPO conference & the 5th Plant Proteomics Conference in China, Harbin, China, June 25, 2014

89) Utilizing the natural biochemical factory for enhancing the human life. College of Life Sciences, Heilongjiang University, Harbin, China, June 20, 2014

88) Protein redox regulation in guard cell signaling. The Samuel Roberts Noble Foundation, Ardmore, OK, USA, May 13, 2014.

87) Metabolomics of Stomatal movement in response to environmental stresses. Pennsylvania State University, University Park, PA, USA, March 3, 2014.

86) Toward Systems Biology of Plant Metabolic Networks. University of Wisconsin, Milwaukee, WI, USA, October 4, 2013.

85) Towards Utilizing the Plant Biochemical Factory: Lessons from Plant Glucosinolate Metabolism, Tokyo University of Agriculture and Technology, Koganei, Tokyo, Japan, September 27, 2013.

84) Characterization of plant glucosinolate metabolic networks, RIKEN Center for Renewable Resource Science, Yokohama, Japan, September 25, 2013.

83) Functional proteomics of plant signaling and metabolic networks, The 12th Human Proteome Organization World Congress (HUPO 2013),Yokohama, Japan, September 18, 2013.

82) Molecular networks of plant glucosinolate metabolism, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China, August 5, 2013.

81) Omics applications in plant biology: examples from stomatal movement. College of Life Sciences, Northeast Forestry University, Harbin, China, July 15, 2013.


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80) Proteomics and metabolomics of molecular networks regulating glucosinolate metabolism, 2013 International Scientific Forum on Plant Secondary Metabolism and Natural Product Biosynthesis. Wuhan, Hubei, China, July 6, 2013.

79) Proteomics data generation and analysis toward systems biology. UF Workshop on Dense, Intense, and Complex Data, University of Florida, Gainesville, USA, June 19, 2013

78) Understanding plant stomatal movement using o technologies. College of Biological Sciences, Shanghai Normal University, Shanghai, China, November 20, 2012.

77) Elucidation of plant iology. College of Forestry, Northeast Forestry University, Harbin, China, November 17, 2012.

76) Plant systems biology and applications. College of Life Sciences, Yang Guang Lecture of Helongjiang University, Harbin, China, November 15, 2012.

75) Advances in glucosinolate molecular networks. College of Life Sciences, Northeast Forestry University, Harbin, China, November 13, 2012.

74) Guard cell signaling and metabolic networks revealed by proteomics and metabolomics. The 4th International Symposium on Frontiers in Agriculture Proteome Research, Wuhan, China, November 8 November 11, 2012.

73) Redox regulation and protein phosphorylation in guard cell hormonal signaling. 2012 Plant Phosphorylation Workshop, Keystone, Colorado, October 25 - October 28, 2012.

72) Elucidate Molecular Networks in Cells. The 5th Symposium of Science, Engineering and Biomedicine. Sarasota, August 31-September 3, 2012.

71) Elucidating hormone signaling in guard cells. Department of Chemistry, University of Florida, Gainesville, Florida, USA, September 21, 2012.

70) ABA signaling networks in guard cells. NSF Beacon Workshop, Virginia Tech, Blacksburg, August 12-14, 2012.

69) Proteomic approaches to elucidating guard cell signaling networks. Department of Biology, Florida A&M University. Tallahassee, Florida, July 25-26, 2012 (invited by students).

68) Redox regulatory mechanisms in guard cell hormone signaling. Plant Molecular Biology Gordon Conference. Holderness, New Hampshire, July 15-20, 2012.

67) A systems approach to understanding guard cell hormone signaling networks. National Key Laboratory of Plant Physiology and Biochemistry. China Agricultural University. Beijing, China, April 14, 2012.

66) Research on plant molecular networks and its potential applications. Science for Life Lecture Series, University of Florida, Gainesville, March 20, 2012

65) Enabling anti-cancer compound production using the plant biochemical factory. Department of Biology, Florida Atlantic University, Boca Raton, Florida, USA, February 21-23, 2012.

64) Tackling plant signaling networks using stomatal guard cells as a model. Parade of Faculty-Graduate Student Seminar, Biology Department, University of Florida, January 24, 2012.

63) Guard Cell Proteomics Reveals Novel Gene Functions in Glucosinolate Metabolism. Genetics Institute, University of Florida, USA, January 17, 2012.


59

62) Guard cell proteomics reveals novel gene functions in glucosinolate metabolism. College of Horticulture, Northeast Agricultural University, Harbin, China, December 16, 2011.

61) The power of omics in modern biological research and education. Sunshine Stage Seminar Series. Heilongjiang University, December 15, 2011.

60) Proteomics and metabolomics of molecular networks towards rationale plant biotechnology. College of Biological Sciences, Qiqihaer University, Qiqihaer, China, December 14, 2011.

59) Application of proteomics and metabolomics in agricultural research. Institute of Nuclear-Agricultural Sciences, Zhejiang University, Hangzhou, China, December 7, 2011.

58) Application of proteomics and metabolomics in agricultural research. Department of Horticulture, Zhejiang University, Hangzhou, China, December 6, 2011.

57) Towards systems biology of guard cell signaling and glucosinolate networks. The 2nd International Conference on Plant Metabolism. Qingdao, China, June 30-July 3, 2011.

56) Toward Systems Biology of Plant Signaling and Metabolic Networks. Department of Biology, University of Pennsylvania, March 16-18, 2011.

55) Elucidation of plant molecular networks through fishing expedition and the study of fish . Department of Horticulture, Zhejiang University, December 17, 2010.

54) The application of proteomics in biological research. College of Life Sciences, Northeast Agricultural University, December 13, 2010.

53) The promise and challenges of plant biotechnology. Sunshine Stage Seminar Series. Heilongjiang University, December 9, 2010.

52) "Omics" for hypothesis generation research. The 4th Symposium of Science, Engineering and Biomedicine. Orlando, September 3-6, 2010.

51) Identification of redox sensitive proteins in Brassica napus guard cells: new evidence for crosstalk between ABA and MeJA signaling pathways. Plant Biology 2010 - the Annual Meeting of American Society of Plant Biologists. Montreal, Canada, July 31 - August 4, 2010.

50) Current advances in 2D gel electrophoresis and applications. Proteomics Workshop organized by the Biotechnology Core of the College of Pharmacy and Pharmaceutical Sciences at Florida A&M University. Tallahassee, Florida, May 19 -20, 2010.

49) Advances in quantitative membrane proteomics. Harbin No. 1 Medical University, Harbin, December 22, 2009.

48) Proteomics of plant redox regulatory networks. Department of Horticulture, Zhejiang University, December 27, 2009.

47) Elucidating cellular molecular networks using proteomics and metabolomics. College of Life Sciences, Heilongjiang University, Harbin, December 29, 2009.

46) Proteomics of plant redox regulatory networks. 3rd Mexican Symposium on Mass Spectrometry Molecular and Cellular Proteomics, San Luis Potosi, S.L.P., Mexico, November 8-12, 2009.

45) Quantitative proteomics revealed plant guard cell signaling and metabolic networks. 1st International Congress on Analytical Proteomics, Caparica, Lisbon, Protugal, September 30-October 3, 2009.


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44) Towards systems biology of plant signaling networks. Department of Plant Biology, Cornell University, Ithaca, New York, September 18, 2009.

43) Towards a systems analysis of plant molecular networks. 2009 World In Vitro Biology Conference, Charleston, South Carolina, USA, June 6-12, 2009.

42) Comparative proteomics of redox regulated proteins. The second Moffitt Symposium on Mass Spectrometry. Tampa, Florida, February 12, 2009.

41) Towards systems biology of plant signaling and metabolic networks. Plant Pathology Department, University of Florida, USA. November 4, 2008.

40) Towards a systems level analysis of plant molecular networks. Florida Citrus Research and Education Center, Lake Alfred, Sept. 12.

39) Functional characterization of an Arabidopsis isopropylmalate dehydrogenase involved in leucine and glucosinolate biosynthesis. Banff International Conference on Plant Metabolism, Banff, Alberta, Canada, August 2, 2008.

38) Proteomics applications in biomedical research: current examples and future perspectives. Center of Analytical Medicine, Harbin Medical University, Harbin, May 19, 2008.

37) Redox proteomics of jasmonate signaling in Arabidopsis. Botany Institute, Chinese Academy of Sciences, Beijing, China, April 28, 2008.

36) Plant proteomics and metabolomics our success and lessons. Department of Biological Sciences, China Agricultural University, Beijing, China, April 25, 2008.

35) Alteration of glucosinolate metabolism leads to heavy metal resistance in Arabidopsis. Microbiology and Cell Sciences, University of Florida, April 21, 2008

34) Functional characterization of AtLeuC1 in glucosinolate biosynthesis in Arabidopsis. Plant Pathology Department, University of Florida, Gainesville, Dec. 4, 2007

33) Can plant biology research save the world ? Science for Life Lecture Series, University of Florida, Gainesville, October 16, 2007

32) Towards systems biology of glucosinolate metabolism. Pennsylvania State University, State College, Pennsylvania, August 08, 2007

31) Plant suspension cells as model systems to study biological questions. Northeast Forestry University, Harbin, China, June 18, 2007

30) Plant biology research and human future. Sunlight Lecture Series, Heilongjiang University, Harbin, China, June 11 - 22, 2007

29) Applications of proteomics in biological research and beyond. Department of Biochemistry, St. Louis University, St. Louis, May 21, 2007

28) Glucosinolate metabolism in Arabidopsis. Microbiology and Cell Science Department, University of Florida, Gainesville, Nov. 27, 2006

27) System biology in plant glucosinolate research. Gatersleben Lecture, Leibniz Gemeinschaft and SunGene, BASF, Gatersleben, Germany, Sept. 19, 2006

26) Vacuolar proteomics revealed important features of the glucosinolate-myrosinase system in Arabidopsis. The 1st International Conference on Plant Glucosinolate Metabolism, Jena, Germany, Sept. 12, 2006.

25) Plant systems biology: current status and future perspective. Northeast Forestry University, Harbin, China, Aug. 12, 2006.


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24) Proteomics revealed targets for food genetic engineering. The 7th International Plant Genomics Conference, Harbin, China, Aug. 10, 2006.

23) Glucosinolate biosynthesis and systems biology. Genetics Institute Seminar Series, University of Florida, April 12, 2006.

22) Plant Proteomics and glucosinolate metabolism. PMCB Program, University of Florida, Feb. 23, 2006.

21) Cassava root proteomics. Biology Department. University of Missouri at Rolla. Rolla, U.S.A. Nov. 7, 2005

20) Current technologies for protein characterization. The 22nd Conference of Midwest Chinese Science and Technology, St. Louis, U.S.A. Oct. 15, 2005.

19) Arabidopsis glucosinolate metabolism. National key laboratory of Plant Physiology and Biochemistry, China Agricultural University, Beijing, China, July 14, 2005.

18) Metabolic engineering of plant secondary metabolites. College of Biological Sciences, Northeast Forestry University, Harbin, China. July 8, 2005.

17) Proteomics and mass spectrometry approaches to unraveling biological black-boxes. Department of Plant Biology, Southern Illinois University, Carbondale, U.S.A. March 22, 2005

16) Plant glucosinolate biosynthesis and vacuomics. Department of Botany, University of Florida, Gainesville, U.S.A. January 20, 2005

15) Protein fractionaton and mass spectrometry characterization. Sigma Biotechnology Center, St. Louis, U.S.A. November 22, 2004

14) Vacuolar proteomics, an example for discovering novel protein functions. Department of Biology, University of Missouri at St. Louis, U.S.A. May 7, 2004

13) Proteomics and mass spectrometry tools for biomedical research. Department of Microbiology and Immunology, St. Louis University, St. Louis, March 16, 2004

12) Proteomics technologies, Instrumentation and Bioinformatics. Department of Biology, Washington University at St. Louis, U.S.A. Feurary 3, 2004

11) Proteomics and mass spectrometry technologies and applications. Thursday Evening Seminar Series, Danforth Plant Science Center, St. Louis, U.S.A. January 22, 2004.

10) Vacuomics: definition of the vacuolar proteome of yeast and Arabidopsis. Pan-American Plant Membrane Biology Workshop, Cuernavaca, Mexico. May 28 - June 1, 2003

9) The AtATM Arabidopsis subfamily of mitochondrial ABC transporters is implicated in iron homeostasis. Pan-American Plant Membrane Biology Workshop, Cuernavaca, Mexico. May 28-June 1, 2003.

8) Cytochromes P450 CYP79F1 and CYP79F2 in the biosynthesis of glucosinolates in Arabidopsis. Department of Biology, University of Pennsylvania, U.S.A. May 2001

7) Glucosinolate metabolism and transport. Plant Physiology, Today and Tomorrow, Ph.D. Workshop, TanumStrand, Sweden. August 7-11, 2000

6) Functional characterization of the myrosinase MYR1 from Brassica napus in Saccharo-myces cerevisiae. European Research Conference on Plant Cell Biology and Biothechnology Applications, Rolduc, Netherlands. September, 1999

5) Plasma membrane glucosinolate transport systems. Center of Plant Physiology and Molecular Biology, University of Tuerbingen, Germany. May 1999.


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4) Reactive oxygen species generated by plasma membrane NADH oxidase and the role in plant elongation growth. Center for Molecular Plant Physiology, Royal Danish Veterinary and Agricultural University, Frederiksberg, Denmark. April 1998.

3) Recent advancement in plant plasma membrane redox systems. Annual Cell Biology Conference, Chinese Society for Cell Biology, Shanghai. September 1995.

2) Biochemical characterization of a novel plasma membrane redox system. No. 6 National Conference of Cell Biology, Chinese Society for Cell Biology, Huangshan, China. June 1995.

1) Osmotic signal transduction in Dunaliella salina and its implications in salt stress regulation. National Plant Environmental Physiology Conference, Fuzhou, China. October 1994.

CONFERENCE PROCEEDINGS: POSTERS AND ABSTRACTS 213) David, L., Kang, J., Nicklay, N., Dufresne, C., Chen, S. (2021) Identification of

DIR1-dependant molecular responses required for systemic acquired resistance in guard cells. The 82nd American Society of Plant Biologists Southern Section Annual Conference, virtual zoom, April 16 -18, 2021.

212) Xiang, Q.Y., Chen, S. (2021) Regulation of stomatal immunity by post-translational modifications in single cells. Virtual Genetics Institute Graduate Research Showcase, Gainesville, FL, virtual zoom, April 12, 2021.

211) Chhajed, S., Chen, S. (2021)

virtual zoom, April 12, 2021. 210) David, Chen, S. (2021) Effect of Systemic Acquired Resistance on Guard Cell

Immunity (selected for oral presentation). The 82nd American Society of Plant Biologists Southern Section Annual Conference, virtual zoom, April 16 -18, 2021.

209) Lin, L.L., Chhajed, S., Mangual, G., Chen, S. (2021) Role of myrosinases in stomatal immunity against Pseudomonas syringae. University of Florida Undergraduate Research Symposium (virtual), Gainesville, FL, April 16, 2021.

208) Pourmoghadam, M., David, L., Chen, S. (2021) Effects of systemic immunity on diurnal stomatal movement of Arabidopsis thaliana. University of Florida Undergraduate Research Symposium (virtual), Gainesville, FL, April 16, 2021.

207) Balmant, K., Lawrence II, S., Duong, B., Zhu, F., Zhu, N., Nicklay, J., Chen, S. (2021) A role of lipid transfer protein in plant defense revealed by redox proteomics. The 82nd American Society of Plant Biologists Southern Section Annual Conference, virtual zoom, April 16 -18, 2021.

206) David, L., Kang, J.N., Li, Y., Chen, S. (2021) Simultaneous extraction of proteins, metabolites and lipids for high coverage multi-omics. The ABRF 2021 Annual Meeting Supporting Interdisciplinary Science, March 7-11, 2021.

205) Kang, J.N., David, L., Scott, P.B., Chen, S. (2020) Three-in-one simultaneous extraction of proteins, metabolites and lipids for multiomics. HUPO 19th Annual World Congress (HUPO CONNECT2020), October 19-22th, 2020.

204) Mao, J., Jain, A., Denslow, N.D., Nouridelavar, M., Chen, S., Wang, T., Zhu, N., Koh, J., Sarma, S.J., Sumner, B.W., Lei, Z., Sumner, L.W., Bivens, N.J., Roberts, R.M., Tuteja, G., Rosenfeld, C.S. (2020) Effects of bisphenol A and bisphenol S


63

disruptions of the mouse placenta on the placenta-brain axis, International Federation of Placenta Association (IFPA) 2020 Conference, Amsterdam, The Netherland, September 2-5, 2020.

203) Pourmoghadam, M., David, L., Chen, S. (2020) Effects of systemic immunity on diurnal stomatal movements in Arabidopsis. University of Florida Undergraduate Research Symposium (zoom), Gainesville, Florida, May 8, 2020.

202) Warnock, L., Moran, R., David, L., Chen, S. (2020) Effect of stomatal densities of on immune responses of wild type Arabidopsis and npr1 mutant. University of Florida Undergraduate Research Symposium (zoom), Gainesville, Florida, May 8, 2020.

201) Kang, J., David, L., Zhu, W., Koh, J., Dufresne, C., Chen, S. (2020) Development of an integrative proteomics, metabolomics and lipidomics methodology - a case study of plant defense molecular networks. ABRF 2020 Annual Meeting at the Palm Springs Convention Center, Palm Springs, CA, USA, February 29-March 3, 2020.

200) David, L., Kang, J., Chen, S. (2020) Cell-Molecular Responses to Long-Distance Signals to Strengthen Arabidopsis Immunity. Southeast Regional Conference of SACNAS - The National Diversity in STEM Conference. Gainesville, Florida, February 28-29, 2020.

199) Warnock, L., Moran, R., David, L., Chen, S. (2020) Stomatal densities of wild type Arabidopsis thaliana and disease susceptible mutant npr1 throughout vegetative development. Southeast Regional Conference of SACNAS - The National Diversity in STEM Conference. Gainesville, Florida, February 28-29, 2020.

198) Lorenzo, A., Grela, I., David, L., Chen, S. (2020) Morphological effects of systemic immunity during development of wild type and npr1 mutant Arabidopsis thaliana. 2020 Southeast Regional Conference of SACNAS - The National Diversity in STEM Conference. Gainesville, Florida, February 28-29, 2020.

197) Lin, C., Zhu, W., Jeevaratnam, S., Chen, S. (2020) Metabolomic differences in Arabidopsis MPK4 mutant and wild type leaves. Plant Science Symposium, Gainesville, Florida, January 30-31, 2020.

196) Dufresne, C., Zhu, W., Chen, S. (2020) Development of a Arabidopsis thaliana reference plant metabolomics library. Bioprocessing Thermo Conference, The Mayflower Hotel, Washington, USA, Jan 29 - 31, 2020.

195) Califar, B., Diao, X., Zheng, R., Prentice, B.M., Chen, S., Ferl, R.J., Paul, A-L. (2019) In situ mass spectrometric analysis of spaceflight effects on xyloglucan composition of Arabidopsis thaliana root cell walls. The American Society for Gravitational and Space Research (ASGSR) Conference, Denver, Colorado, USA, November 20th-23rd, 2019.

194) Tello, N., Chhajed, N., Chen, S. (2019) Characterization of stomatal immune responses in enriched stomata tape peels. The Annual Biomedical Research Conference for Minority Students (ABRCMS), Anateim, CA, USA, November 13-16, 2019.

193) Chhajed, S., Tello, N., Dufresne, C.D., Chen, S. (2019) Single-cell type study of . Florida Genetics Symposium,

Gainesville, FL, USA, November 4-5, 2019.


64

192) Chen, D., Cao, B., Guan, Q.J., Chen, S. (2019) Phosphoproteomics of sweet orange (Citrus sinensis) infected by Candidatus liberibacter. Florida Genetics Symposium, Gainesville, FL, USA, November 4-5, 2019.

191) David, L., Kang, J., Ortega, A., Grela, I., Dufresne, D., Chen, S. (2019) Multi-omic Analyses Revealed Stomatal Molecular Responses to Long-Distance Signals to Strengthen Arabidopsis Immunity to Bacterial Pathogens. Florida Genetics Symposium, Gainesville, FL, USA, November 4-5, 2019.

190) Grela, I., Moran, R., Ortega, A., Pourmoghadam, M., Lorenzo, A., David, L., Chen, S. (2019) Stomatal responses of Arabidopsis wild type and npr1 mutant during systemic immunity. Florida Genetics Symposium, Gainesville, FL, USA, November 4-5, 2019.

189) Guan, Q.J., Kong, W., Kelly, T.M., Hope, H., Dufresne, D., Tian, J.K., Chen, S. (2019) Multi-omics of Mesembryanthemum crystallinum transition from C3 to CAM. Florida Genetics Symposium, Gainesville, FL, USA, November 4-5, 2019.

188) Kang, J., David, L., Cang, J., Chen, S. (2019) Integrative proteomics, metabolomics and lipidomics of the same sample: a proof-of-concept study of plant defense molecular networks. Florida Genetics Symposium, Gainesville, FL, USA, November 4-5, 2019.

187) Lin, C., Jeevaratnam, S., Zhang, T., Chen, S. (2019) Identification of guard cell specific MPK4 protein complex using affinity proteomics. Florida Genetics Symposium, Gainesville, FL, USA, November 4-5, 2019.

186) Zhu, W., Guan, Q.J., Kang, J., David, L., Dufresne, C.P., Tian, J.K., Chen, S. (2019) Proteomics and metabolomics of metabolic changes in Mahonia bealei leaves under ultraviolet and darkness. Florida Genetics Symposium, Gainesville, FL, USA, November 4-5, 2019.

185) Ge, Y., Paisie, T.K., Chen, S., Concannon, P. (2019) UBASH3A regulates the synthesis and dynamics of T-cell receptor-CD3 complexes. Florida Genetics Symposium, Gainesville, FL, USA, November 4-5, 2019.

184) David, L., Kang, J., Ortega, A., Grela, I., Chen, S. (2019) Integrative metabolomic, proteomic and lipidomic analyses revealed stomatal molecular responses to long-distance signals to strengthen Arabidopsis immunity to bacterial pathogen. 2019 SACNAS - The National Diversity in STEM Conference. Honolulu, Hawai'I, USA, October 31 - November 2, 2019.

183) David, L., Kang, J., Chen, S. (2019) Using multi-omics to understand the cellular level battle between plants and bacterial pathogens. Science by the Shore Symposium, September 21, 2019, Whitney Laboratory for Marine Bioscience in St. Augustine, Florida, USA.

182) Pang, Q., Zhang, T., Zhang, A., Kong, W., Chen, S. (2019) Proteomic and phosphoproteomic networks of Arabidopsis stomatal immune responses. HUPO 18th Annual World Congress (HUPO 2019) in Adelaide, Australia, September 15-18th, 2019.

181) Zhu, M., Chen, S., Assmann, S.M. (2019) Metabolomics of red light-induced stomatal opening. European Society of Photobiology Conference, Barcelona, Spain, August 25-30, 2019

180) Zhang, T., Lin, C., Schneider, J.D., Geng, S., Ma, T., Lawrence, S.R., Dufresne, C.P., Harmon, A.C., Chen, S. (2019) Quantitative proteomics of MPK4


65

phosphorylation dynamics and interacting proteins. American Society for Biochemistry and Molecular Biology (ASBMB) 2019 Mass Spectrometry in the Health and Life Sciences, San Francisco, CA, USA, August 18 to 22, 2019

179) Crane, R.A., Valdez, M.C., Castaneda, N., Elbaz, I.M., Kong, W., Chen, S., Brusslan, J.A. (2019) Genetic evidence supports a role of exosomes in leaf senescence in Arabidopsis thaliana. Plant Biology 2019, San Jose, California, USA, August 3-7, 2019

178) Mao, J., Jain, A., Denslow, N.D., Nouridelavar, M., Chen, S., Wang, T., Zhu, N., Koh, J., Sarma, S.J., Sumner, B.W., Lei, Z., Sumner, L.W., Bivens, N.J., Roberts, R.M., Tuteja, G., Rosenfeld, C.S. (2019) Bisphenol A and bisphenol S disruptions of the mouse placenta and potential effects on the placenta-brain axis. The 52nd Annual Meeting of the Society for the Study of Reproduction (SSR), San Jose, CA, USA, July 18-21, 2019

177) Balmant, K., Lawrence, S., Chen, S. A new redox proteomics technology reveals role of a lipid transfer protein in plant stomatal defense. The 30th International Conference on Arabidopsis Research, Wuhan, China, June 16-21, 2019

176) Li, M., Zhang, T., Scott, P., Li, H., Chen, S. (2019) JAZ7 regulated proteomic and metabolomic changes in Arabidopsis drought tolerance. The 30th International Conference on Arabidopsis Research, Wuhan, China, June 16-21, 2019

175) Chen, S. (2019) Elucidation of molecular switches regulating plant C3 to CAM transition using integrative transcriptomics, proteomics and metabolomics. 67th American Society for Mass Spectrometry Annual Conference, Atlanta, GA, USA, June 2-6, 2019.

174) Koh, J., Park, S., Yoo, M-J., Chen, S., Sayeski, P. (2019) Proteomic profiling in hematopoietic tissues of Jak2 conditional knock-out mice. 67th American Society for Mass Spectrometry Annual Conference, Atlanta, GA, USA, June 2-6, 2019.

173) Koh, J., Zheng, R., Wang, T., Zhu, N., Zhu, F., Chen, S. (2019) Proteomics and mass spectrometry applications in biological and medical research. 67th American Society for Mass Spectrometry Annual Conference, Atlanta, GA, USA, June 2-6, 2019.

172) Koh, J., Zhu, N., Wang, T., Zheng, R., Zhu, F., Goldberg, J., Chen, S. (2019) Discovering "Needles in a Haystack" using Multiple Reaction Monitoring Mass Spectrometry. 67th American Society for Mass Spectrometry Annual Conference, Atlanta, GA, USA, June 2-6, 2019.

171) Chhajed, S., Dufresne, C., Tello, N., Harmon, A., Chen, S. (2019) New features -types. 67th American

Society for Mass Spectrometry Annual Conference, Atlanta, GA, USA, June 2-6, 2019.

170) Koh, J., Wang, T., Zheng, R., Zhu, N., Zhu, F., Chen, S. (2019) Proteomics and mass spectrometry applications in biological and medical research. SEARS 2019: Southeastern Association of Shared Resources Atlanta, GA, U.S.A.

169) Koh, J., Park, S., Yoo, M., Chen, S., Sayeski, P. (2019) Comparative proteomic analysis in hematopoietic tissues of Jak2 conditional knock-out mice. 15th Avison Biomedical Symposium 2019 May 30 June 1: Yonsei University, Seoul, Rep. of Korea


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168) Jeevaratnam, S., Lin, C., Chen, S. (2019) Effect of sonication on stomatal movement. Undergraduate Research Symposium, University of Florida, Gainesville, FL, USA, April 4.

167) Tello, N., Chhajed, N., Chen, S. (2019) Characterization of stomatal movement in response to pseudomonas syringae pv. tomato DC3000. 2019 College of Medicine Research Symposium, University of Florida, Gainesville, FL, USA, February 19, 2019.

166) Ge, Y., Paisie, T.K., Chen, S., Concannon, P. (2018) UBASH3A regulates the synthesis and dynamics of T-cell receptor-CD3 complexes. The American Society for Cell Biology Annual Conference, San Diego, CA, USA, December 8-12.

165) Chen, D., Cao, B., Guan, Q., Chen, S. (2018) Quantitative phosphoproteomics of sweet orange (Citrus sinensis) infected by Candidatus Liberibacter. Florida Genetics Symposium, Gainesville, FL, USA, October 31-November 1, 2018.

164) Chhajed, S., Tello, N., Dufresne, C., Harmon, A., Chen, S. Mustard oil -planned defense mechanism in plants.

Florida Genetics Symposium, Gainesville, FL, USA, October 31-November 1, 2018.

163) Lin, C., Jeevaratnam, S., Zhang, T., Harmon, A., Chen, S. (2018) Investigation of MPK4 functions in stomatal immunity against Pseudomonas syringae pv. tomato. Florida Genetics Symposium, Gainesville, FL, USA, October 31-November 1, 2018.

162) Guan, Q., Kong, W., Kelly, T., Yoo, M-J., Tian, J., Chen, S. (2018) Transcriptomics of Mesembryanthemum crystallinum in transition from C3 to CAM. Florida Genetics Symposium, Gainesville, FL, USA, October 31-November 1, 2018.

161) Lawrence, S.R. II, Balmant, K.M., Duong, B., Zhu, N., Dufresne, C., Chen, S. (2018) Redox Proteomics of Plant Innate Immunity in Guard Cells. Plant Molecular and Cellular Biology Annual Conference, Daytona Beach, Florida, USA, May 10-12.

160) Collins, J. , K., Gurley, W.B., Chen, S. (2018) A potential role for the blades of TPL. Plant Molecular and Cellular Biology Annual Conference, Daytona Beach, Florida, USA, May 10-12.

159) Chhajed, S., Zhang, T., Harmon, A., Chen, S. (2018) Identification and Validation of potential MPK4 substrates. Plant Molecular and Cellular Biology Annual Conference, Daytona Beach, Florida, USA, May 10-12.

158) Kelley, T., Kong, T., Yoo, M-J., Harmon, A., S. Chen (2018) Single Cell-Type Proteomics of C3 to CAM transition in Mesembryanthemum crystallinum. 2018 American Society for Mass Spectrometry Sanibel Conference, Hilton St. Petersburg Bayfront Hotel, St. Petersburg, Florida, USA, January 25 - 28, 2018

157) Chen, S., Balmant, K.M., Lawrence, S.R., Parker, J., Zhu, F., Zhu, N., Harmon, A. (2018) Redox proteomics application in stomatal guard cell immune signaling. Keystone symposium, Plant Signaling: Molecular Pathways and Network Integration (A4), Granlibakken Tahoe, Tahoe City, California, USA, January 21-24, 2018.

156) El-Domiaty, M., Chen, S., Abou-Hashem, M. and Mostafa, I. (2017) Proteomics, metabolomics and the pharmaceutical science. 6th scientific conference, Faculty of Pharmacy, Zagazig University, Zagazig, Egypt.


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155) Lawrence, S.R., Balmant, K.M., Duong, B., Zhu, F., Zhu, N., Dufresne, C., Chen, S. (2017) Redox proteomics of plant innate immunity in guard cells. 2017 Florida Genetics Symposium, Gainesville, Florida, USA, October 26-27, 2017.

154) Feng, G., Davenport, R., Yoo, M-J., Boatwright, J.L., Koh, J., Chen, S., Barbazuk, W.B. (2017) Jasmonate induced alternative splicing responses in Arabidopsis. Florida Genetics Symposium, Gainesville, FL, USA, October 26-27, 2017.

153) Chhajed, S., Tong Zhang, Harmon, A., Chen, S. (2017) Identification of MPK4 substrate proteins using proteomics. 2017 Florida Genetics Symposium, Gainesville, Florida, USA, October 26-27, 2017.

152) Kong, W., Armas, E., Li, J., Chen, S. (2017) Proteomics and Metabolomics of Drought Tolerance of an Arabidopsis SNARE (VAM3) Mutant. 2017 Florida Genetics Symposium, Gainesville, Florida, USA, October 26-27, 2017.

151) Geng, S., Misra, B.B., Zhu, N., Huhman, D., Sumner, L.W., Chen, S. (2017) Metabolomic regulation of Brassica napus guard cell elevated CO2 response. The XIX International Botany Conference (IBC), Shenzhen, China, July 23-29, 2017.

150) Collins, J., Guiley, W., Chen, S. (2017) Non-canonical interactions contributing to topless mediated repression. Plant Molecular and Cellular Biology Annual Conference, Daytona Beach, Florida, USA, May 5-6.

149) Lawrence, S., Yoo, M., Harmon, A.C., Chen, S. (2017) Identification of nitrosylated proteins in stomatal immune signaling. Plant Molecular and Cellular Biology Annual Conference, Daytona Beach, Florida, USA, May 5-6.

148) Geng, S., Zhu, N., Armas, E., Huhman, D., Alborn, H.T., Sumner, L.W., Chen, S. (2017) Time-resolved metabolomics reveals guard cell phytohormone functions under elevated CO2. Plant Science Symposium, Gainesville, Florida, USA, April 13-14.

147) Lawrence, S., Yoo, M-J., Harmon, A., Chen, S. (2017) Identification of nitrosylated proteins in stomatal innate immune signaling. University of Florida Graduate Student Research Day, Gainesville, FL, USA, April 3, 2017.

146) Kelley, T., David, L., Moran, R., Scott, P., Ma, T., Harmon, A., Chen, S. (2017) Effects of ABA and P. syringae pv. Tomato (Pst) on Stomata of Arabidopsis thaliana Wild-type, ost1, and Transgenic Brassica napus OST1 homolog. Annual University of Florida Undergraduate Student Research Symposium, Gainesville, FL, USA, March 23, 2017.

145) Ahn, S.J., Koh, J., Chen, S. (2017) Proteome-wide changes by LrgAB and environmental stressors in Streptococcus mutans. 2017 IADR/AADR/CADR General Session & Exhibition, San Francisco, USA, March 22-25, 2017.

144) Wright, J.E., Misra, B.B., Chen, S., Avery, M.L., Kimball, R.T. (2017) Do turkey (Cathartes aura) and black (Coragyps atratus) vultures have odor signatures that could be used for social communication? Society for Integrated and Comparative Biology (SICB) Annual Conference, New Orleans, USA, January 4-8, 2017.

143) Ma, T., Yoo, M., Sha, W., Chen, S. (2016) Characterization of thiol redox modifications of SnRK2.6-2C from Brassica napus. 8th Annual meeting of Proteomic Society, India; 8th International Symposium on Frontiers in Agricultural Proteome Research and 3rd meeting of Asia Oceania Agricultural Proteomics


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Proteomics: Application in Food and Health. New Delhi, India, Depcember 12-16, 2016.

142) Kong, W.W., Yoo, M.J., Chen, S. (2016) Identification of molecular switches underlying the transition from C3 photosynthesis to Crassulacean acid metabolism (CAM) in Mesembryanthemum crystallinum. Florida Genetics 2016 Conference, University of Florida, Gainesville, USA, November 30 - December 1.

141) Balmant, K.M., Duong, B., Zhu, F., Zhu, N., Dufresne, C., Chen, S. (2016) Redox proteomics of plant innate immunity in guard cells. Florida Genetics 2016 Conference, University of Florida, Gainesville, USA, November 30 - December 1.

140) Song, W.Y., Huang, X., Chen, X., Gang, S., Chen, S. (2016) Drought tolerance-mediated by the rice ubiquitin ligase OsDT1. 4th International Conference on Plant Genomics. in Brisbane, Australia, July 14-15, 2016

139) Chen, H., Wang, B., Geng, S., Chen, S., Qu, R. (2016) Understanding Nicotine Biosynthesis Regulation in Nicotiana tabacum L. Plant Biology 2016-the Annual Meeting of American Society of Plant Biologists. Austin, Texas, USA, July 9-13.

138) Geng, S., Misra, B., Yu, B., Zhu, N., Armas, E., Huhman, D., Alborn, H.T., Sumner, L.W., Dufresne, C., Chen, S. Time-resolved metabolomics reveals guard cell phytohormone functions under high and low CO2. Plant Biology 2016-the Annual Meeting of American Society of Plant Biologists. Austin, Texas, USA, July 9-13.

137) Yoo, M., Koh, J., Yan, H., Dufresne, D., Wang, Q., Chen, S. (2016) Quantitative proteomics insight into the response of Arabidopsis to methyl jasmonate. The 27th International Conference on Arabidopsis Research, Gyeongju, South Korea, June 29 - July 3.

136) Lawrence, S., Yoo, M., Harmon, A., Chen, S. (2016) Identification of nitrosylated proteins in stomatal innate immune signaling. The 27th International Conference on Arabidopsis Research, Gyeongju, South Korea, June 29 - July 3.

135) Geng, S., Misra, B., Armas, E., Huhman, D., Alborn, H.T., Sumner, L.W., Chen, S. (2016) Jasmonate-mediated stomatal closure under elevated CO2 revealed by time-resolved metabolomics. Plant Molecular and Cellular Biology Annual Conference, Daytona Beach, Florida, USA, May 6-7.

134) Lawrence, S., Yoo, M., Harmon, A.C., Chen, S. (2016) Identification of nitrosylated proteins in stomatal innate immune signaling. Plant Molecular and Cellular Biology Annual Conference, Daytona Beach, Florida, USA, May 6-7.

133) Koh, J., Park, S.O., Chen, S., Sayeski, P.P. (2016) Comparative proteomic analysis in hematopoietic tissues of Jak2 conditional knock-out mice. The Association of Biomolecular Resource Facilities 2012 Conference, Ft. Lauderdale, FL, USA, February 20-23.

132) Koh, J., Silva-Sanchez, C., Zheng, R., Zhu, N., Chen, S. (2016) Proteomics and mass spectrometry applications in biological and medical research. The Association of Biomolecular Resource Facilities 2012 Conference, Ft. Lauderdale, FL, USA, February 20-23.

131) Balmant, K., Zhang, T., Parker, J., Zhu, N., Nicklay, J., Dufresne, C., Chen, S. (2016) Development of redox proteomics technologies and application in plant defense against pathogens. The Association of Biomolecular Resource Facilities 2012 Conference, Ft. Lauderdale, FL, USA, February 20-23.


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130) Balmant, K., Parker, J., Yoo, M.J., Dufresne, C., Zhu, N., Chen, S. (2016) Role of KAT2 oxidation in the antagonistic relationship between salicilic acid and jasmonic acid in plant immnunity. The Plant and Animal Genome Conference XXIV, San. Diego, CA, USA, January 9-13.

129) Huang, X., Xu, X., Geng, S., Chen, S., Song, W. (2015) The function of XA21 in drought stress tolerance of rice. Workshop on Plant Development and Drought Stress. Asilomar Conference Grounds, Pacific Grove, CA, USA, November 1-4.

128) Geng, S., Misra, B.B., Zhu, N., Huhman, D., Sumner, L.W., Chen, S. (2015) Metabolomics of CO2 responses in Brassica napus guard cells revealed the signaling role of jasmonates. Florida Genetics 2015 Conference, University of Florida, Gainesville, USA, November 18-19.

128) Mostafa, I., Zhu, N., Geng, S., Dufresne, C., Abou-Hashem, M., El-Domiaty, M., Chen, S. (2015) Proteomics of Arabidopsis thaliana myb28/29 and cyp79B2/B3 membrane proteins. Florida Genetics 2015 Conference, University of Florida, Gainesville, USA, November 18-19.

127) Yin, Z., Yoo, M.J., Chen, S., Dai, S. (2015) Saline-alkali NaHCO3-responsive mechanisms in leaves of halophyte Puccinellia tenuifolra revealed by physiological and proteomic analyses. Florida Genetics 2015 Conference, University of Florida, Gainesville, USA, November 18-19.

126) Misra, B.B., Chen, S. (2015) Cell-type specific glucosinolate distribution in Arabidopsis leaves reflect defense strategies. Florida Genetics 2015 Conference, University of Florida, Gainesville, USA, November 18-19.

125) Shohag, M. J. I., Yang, Q., Koh, J., Yin, Z., Chen, S., Yang, X. (2015) Tissue specific proteomics and ionomics toward understanding cadmium hyper-accumulation and hypertolerance mechanisms in Sedum alfredii Hance. The 7th International Symposium on Frontiers in Agricultural Proteome Research, and the 2nd AOAPO conference, Goesan-gun, Chungcheongbuk-do, Korea, September 23-24, 2014.

124) Zhang, T., Dufresne, C., Song, W., Harmon, A., Chen, S. (2015) Large-scale identification of protein substrates of Brassica napus MPK4 using quantitative phosphoproteomics. Plant Biology 2015-the Annual Meeting of American Society of Plant Biologists. Minneapolis, MN, USA, July 26-30.

123) Eade, C.R., Nguyen, A., Diaz, C., Chen, S., Cole, A.L., Cole, A.M. (2015) HIV-enhancing factors are secreted by reproductive epithelia upon inoculation with bacterial vaginosis-associated bacteria. American Society for Microbiology 115th General Meeting, New Orleans, Louisiana, USA, May 30-June 2.

122) Shohag, M.J., Wei, Y., Yang, Q., Chen, S., He, Z., Yang, X. (2015) Characterization of tissue metabolomic and ionomic responses toward understanding Cadmium hyperaccumulation and hypertolerance in Sedum alfredii Hance. 20th Penn State Plant Biology Symposium - Plant Stress-Omics in a Changing Climate, College Park, PA, USA, May 13-16.

121) Yoo, M.J., Ma, T., Liu, L., Harmon, A., Chen, S. (2015) Genome-wide identification and expression profiling of the SnRK2 genes in Brassica napus. 20th Penn State Plant Biology Symposium - Plant Stress-Omics in a Changing Climate, College Park, PA, USA, May 13-16.


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120) Geng, S., Misra, B.B., Zhu, N., Assmann, S., Chen, S. (2015) Time-resolved metabolomics of CO2 responses in Brassica napus guard cells. 20th Penn State Plant Biology Symposium Plant Stress-Omics in a Changing Climate, College Park, PA, USA, May 13-16.

119) Misra, B.B., Armas, E.D., Balmant, K., Geng, S., Zhu, N., Tong, Z., Chen, S. (2015) Differential metabolomic responses to elevated [CO2] in guard cells and mesophyll cells. Southeast Metabolomics Workshop and Symposium, Gainesville, FL, USA, May 11-14.

118) Yu, B., Yang, L., Pan, Y., Ma, C., Zhu, N., Chen, S., Li, H. (2015) Proteomics of salt tolerance in sugar beet M14 line. Plant Molecular and Cellular Biology Annual Conference, Daytona Beach, Florida, USA, May 8-9.

117) Lawrence, S., Yoo, M., Dufresne, C.P., Zhu, N., Zhang, T., Harmon, A.C., Chen, S. (2015) Identification of redox sensitive proteins in stomatal innate immune signaling. Plant Molecular and Cellular Biology Annual Conference, Daytona Beach, Florida, USA, May 8-9.

116) Misra, B.B., Armas, E.D., Geng, S., Zhu, N., Tong, Z., Chen, S. (2015) Time-resolved cell-type specific metabolomes reveal differential metabolomic responses to elevated [CO2] in guard cells and mesophyll cells. University of Florida 2015 Postdoctoral Research Confernce, Gainesville, FL, USA, April 22.

115) Li, J., Zheng, R., Koh, J., Silva-Sanchez, C., Bao, L., Chen, S. (2015) ICBR Proteomics and Mass Spectrometry Core: Technologies to advance biological and medical research. University of Florida 2015 Celebration of Research, Gainesville, USA, February 9.

114) Goncalves, E.C., Koh, J., Zhu, N., Chen, S., Rathinasabapathi, B. (2014) Evaluation of the involvement of a circadian rhythm-associated transcription factor in lipid accumulation in green algae. Florida Genetics 2014 Conference, University of Florida, Gainesville, USA, October 29-30.

113) Zhang, T., Song, W., Harmon, A., Chen, S. (2014) Identification of MAP kinase 4 interacting proteins using immunoprecipitation proteomics. Florida Genetics 2014 Conference, University of Florida, Gainesville, USA, October 29-30.

112) Geng, S., Misra, B., Zhu, N., Chen, S. (2014) Metabolomics of high CO2 responses of Brassica napus guard cells. Florida Genetics 2014 Conference, University of Florida, Gainesville, USA, October 29-30.

111) Balmant, K.M., Parker, J., Zhu, F., Zhu, N., Chen, S. (2014) cysTMTRAQ an integrative method for unbiased thiol-based redox proteomics. Florida Genetics 2014 Conference, University of Florida, Gainesville, USA, October 29-30.

110) Mostafa, I., Balmant, K., Zhu, N., Yoo, M-J., Misra, B.B., Zhang, T., Abou-Hashem, M., El-Domiaty, M., Chen, S. (2014) Glucosinolate molecular networks revealed by proteomics and metabolomics of glucosinolate biosynthesis mutants. Florida Genetics 2014 Conference, University of Florida, Gainesville, USA, October 29-30.

109) Yang, L., Jiang, T., Scully, B., Lee, D., Kemerait, R., Chen, S., Guo, B. (2014) Drought-responsive protein profiles reveal diverse defense pathways in corn kernels under field drought stress. APS-CPS Joint Annual Meeting, Minneapolis, Minnesota, USA, August 9-13.


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108) Harmon, A., Zhu, M., Zhu, N., Song, W., Assmann, S., Chen, S. (2014) Regulation of Brassica napus guard cell SNRK2.4 by oxidation-reduction. Plant Calcium Signaling Meeting 2014, Münster, Germany, June 22-25.

107) Goncalves, E., Koh, J., Chen, S., Rathinasabapathi, B. (2014) Searching for lipid triggers in biofuel green algae. Plant Biology 2014-the Annual Meeting of American Society of Plant Biologists. Oregon, Portland, USA, July12-16.

106) Silva-Sanchez, C., Li, J., Chen, S., Chourey, P. (2014) A comparative glycoproteome study of developing endosperm in the hexose-deficient miniature1 seed mutant and its wild type Mn1 in maize. 62nd American Society for Mass Spectrometry, Baltimore, MD, June 15-19.

105) Misra, B., Zhu, N., Assmann, S., Chen, S. (2014) Comparative Metabolomics of Bacterial Flagellin 22 Responses in Plant Single Cell-Types. 2014 UF Metabolomics workshop and symposium, Gainesville, Florida, USA, May 20-23.

104) Collins, J., Zhu, N., Gurley, B., Chen, S. (2014) Studying the topless corepressor complex via protein immunoprecipitation. Plant Molecular and Cellular Biology Annual Conference, Daytona Beach, Florida, USA, May 9-10.

103) Balmant, K., Zhu, N., Zhu, F., Chen, S. (2014) Identification of molecular switches in guard cell immunity. Plant Molecular and Cellular Biology Annual Conference, Daytona Beach, Florida, USA, May 9-10.

102) Geng, S., Zhu, N., Assmann, S., Chen, S. (2014) High CO2 response of Brassica napus guard cells - a metabolomics view. Plant Molecular and Cellular Biology Annual Conference, Daytona Beach, Florida, USA, May 9-10.

101) Zhu, F., Parker, J., Chen, S. (2014) Involvement of osmotin in response to Pseudomonas infection of tomato through a redox regulation mechanism. 2014 Creativity in the Arts and Sciences Event (CASE) Undergraduate Research Show, University of Florida, Gainesville, USA, February 1.

100) Hu, G., Koh, J., Salvato, F., Thelen, J., Chen, S., Wendel, J.F. (2014) Comparative Proteomics of Diploid and Polyploid Cotton. Plant and Animal Genome XXII San Diago, CA, Jan 11-15

99) Hu, G., Koh, J., Salvato, F., Thelen, J., Chen, S., Wendel, J.F. (2014) Promise and Pitfalls of Proteomics in Polyploid Plants. Plant and Animal Genome XII San Diago, CA, Jan 11-15.

98) Yoo, M.J., Koh, J., Yan, H., Liu, L., Chen, Y., Acikgoz, D., Wang, Q., Chen, S. (2013) Systems analysis of transcriptomic and metabolic reprograming of Arabidopsis in response to perturbation of jasmonate signaling. Florida Genetics 2013 Conference, University of Florida, Gainesville, USA, October 9-10.

97) Zhang, T., Zhu, M., Song, W., Harmon, A., Chen, S. (2013) Oxidation and Phosphorylation of MAP kinase 4 causes protein aggregation. Florida Genetics 2013 Conference, University of Florida, Gainesville, USA, October 9-10.

96) Li, J., Chow, M., Zheng, R., Koh, J., Silva-Sanchez, C., Chen, S. (2013) Proteomics and mass spectrometry applications in biological and medical research. Florida Genetics 2013 Conference, University of Florida, Gainesville, USA, October 9-10.

95) Zhu, M., Ji, W., Zhang, T., Silva-Sanchez, C., Song, W., Harmon, A., Chen, S. (2013) Redox regulation of a stress hormone inducible serine/threonine protein kinase in Brassica napus. Florida Genetics 2013 Conference, University of Florida, Gainesville, USA, October 9-10.


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94) Collins, J, Gurley, B., Chen, S. (2013) Top-less repressor complex and gene transcription regulation. Florida Genetics 2013 Conference, University of Florida, Gainesville, USA, October 9-10.

93) Geng, S., Zhu, N., Assmann, S., Chen, S. (2013) CO2 signaling in Brassica napus guard cells - a metabolomics view. Plant Molecular and Cellular Biology Annual Conference, Daytona Beach, Florida, USA, May 10-12.

92) Yan, H., Yoo, M.J., Koh, J., Liu, L., Chen, Y., Acikgoz, D., Wang, Q., Chen, S. (2013) Systems analysis of transcriptomic and metabolic reprograming of Arabidopsis in response to perturbation of jasmonate signal pathway. Plant Molecular and Cellular Biology Annual Conference, Daytona Beach, Florida, USA, May 10-12.

91) Zhang, T., Zhu, M., Strul, J.M., Song, W., Harmon, A., Chen, S. (2013) Phosphorylation of MAP kinase 4 causes protein aggregation. Plant Molecular and Cellular Biology Annual Conference, Daytona Beach, Florida, USA, May 10-12.

90) Parker, J., Koh, J., Zhu, N., Foele, M., Yi, S., Chen, S. (2013) Examining proteome regulation in tomato defense against Pseudomonas. Plant Molecular and Cellular Biology Annual Conference, Daytona Beach, Florida, USA, May 10-12.

89) Silva-Sanchez, C., Zhu, M., Diaz, C., Li, J., Chen, S. (2013) Development of phosphopeptide enrichment mass spectrometry for enhancing signal transduction research. University of Florida Research Day, April 2.

88) Zhu, M., Zhu, N., Song, W., Harmon, A.C., Assmann, S.A., Chen, S. (2013) Mass Spectrometry Analysis of Redox Proteins in Guard Cell Hormone Signaling. 61st American Society for Mass Spectrometry, Minneapolis, MN, June 9-13.

87) Li, J., Chow, M., Zhang, R., Koh, J., Silva-Sanchez, C., Chen, S. (2013) Proteomics and mass spectrometry applications in biological and medical research. 2013 UF Shands Cancer Center Research Poster Day, Gainesville, FL, April 1.

86) Silva-Sanchez, C., Zhu, M., Diaz, C., Chen, S. (2012) Characterization of phosphoproteins in signaling pathways using phosphopeptide enrichment mass spectrometry. Florida Genetics 2012 Conference, University of Florida, November 28-29.

85) Silva-Sanchez, C., Chen, S., Zhu, N., Li, Q.B., Chourey, P.S. (2012) Comparative proteomics of maize basal endosperm in miniature1 seed mutant and its wild type Mn1. Florida Genetics 2012 Conference, University of Florida, November 28-29.

84) Yan, H., Yoo, M.J., Chen, Y., Koh, J., Acikgoz, D., Wang, Q., Chen, S. (2012) JAZ2 and JAZ7 function in jasmonate signaling through different mechanisms. Florida Genetics 2012 Conference, University of Florida, November 28-29.

83) Yoo, M.J., Koh, J., Soltis, D.E., Soltis, P.S., Barbazuk, W.B., McIntyre, L.M., Chen, S. (2012) De novo transcriptome assembly and proteome profiling of the recently formed allopolyploid Tragopogon mirus (Asteraceae) and its diploid parents. Florida Genetics 2012 Conference, University of Florida, November 28-29.

82) Zhang, T., Zhu, M., Song, W., Harmon, A.C., Chen, S. (2012) Biochemical characterization of Brassica napus MAP kinase 4. Florida Genetics 2012 Conference, University of Florida, November 28-29.

81) Zhu, M., Zhang, T., Silva-Sanchez, C., Song, W., Harmon, A.C., Chen, S. (2012) Thiol-based redox regulation of serine/threonine protein kinase in Brassica napus. Florida Genetics 2012 Conference, University of Florida, November 28-29.


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80) Jin, X., Wang, R., Albert, R., Chen, S., Assmann, S.M. (2012) Metabolomics of Arabidopsis guard cells. 29th New Phytologist Symposium. Stomata 2012. Manchester, UK. July 2-4.

79) Chen, Y., Pang, Q., He, Y., Zhu, N., Branstrom, I., Yan, X., Chen, S. (2012) Arabidopsis responses to glucosinolate perturbation. Plant Biology 2012-the Annual Meeting of American Society of Plant Biologists. Austin, Texas, USA, July 20-24.

78) Zhu, M., Zhu, N., Booy, A., Simons, B., Yi, S., Harmon, A., Chen, S. (2012) Novel Regulatory mechanism of stress hormone signaling in guard cells. Plant Biology 2012-the Annual Meeting of American Society of Plant Biologists. Austin, Texas, USA, July 20-24.

77) Collins, J., Chen, S. (2012) The topless co-repressor protein family. Plant Molecular and Cellular Biology Annual Conference, Daytona Beach, May 10-12.

76) Koh, J., Zhu, N., Yu, F., Soltis, P.S., Soltis, D.E., Chen, S. (2012) Comparative proteomics of the recently and recurrently formed natural allopolyploid Tragopogon mirus and its parents. Plant Molecular and Cellular Biology Annual Conference, Daytona Beach, May 10-12.

75) Parker, J., Koh, J., Zhu, N., Foele, M., Yi, S., Chen, S. (2012) Quantitative proteomics of tomato defense against Pseudomonas pathogen infection. Plant Molecular and Cellular Biology Annual Conference, Daytona Beach, May 10-12.

74) Chen, Y., Pang, Q., He, Y., Zhu, N., Branstrom, I., Yan, X., Chen, S. (2012) Proteomics and metabolomics of Arabidopsis responses to glucosinolate perturbation. The Association of Biomolecular Resource Facilities 2012 Conference, Orlando, FL, USA, March 17-20.

73) Silva-Sanchez, C., Zhu, M., Diaz, C., Chen, S. (2012) Comparison of different phosphopeptide enrichment strategies in phosphoprotein analysis. The Association of Biomolecular Resource Facilities 2012 Conference, Orlando, FL, USA, March 17-20.

72) Koh, J., Chen, S., Zhu, N., Soltis, P.S., Soltis, D.E. (2012) Proteomics and mass spectrometry of Tragopogon polyploid evolution. The Association of Biomolecular Resource Facilities 2012 Conference, Orlando, FL, USA, March 17-20.

71) Zhu, M., Silva-Sanchez, S., Zhu, N., Chen, Q., Song, W., Harmon, A., Chen, S. (2011) Functional characterization of a serine/threonine protein kinase in Brassica napus guard cells. Plant Phosphorylation Workshop. Granlibakken, Lake Tahoe, California, USA, September 29-October 2.

70) Parker, J., Zhu, N., Koh, J., Foele, M., Yi, S., Chen, S. (2011) Evolutionary tug of war: Examining proteome regulation in tomato defense against Pseudomonas. Plant Biology 2011 Annual Conference, American Society of Plant Biologists. Minneapolis, MN, USA, August 5-11.

69) He, Y., Zhu, N., Pang, Q., Parker, J., Yan, X., Chen, S. (2011) Integrated proteomics and metabolomics revealed metabolic acclimation to gene-dosage dependent perturbation of isopropylmalate dehydrogenases in Arabidopsis. The 2nd International Conference on Plant Metabolism. Qingdao, China, June 30-July 3.


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68) Gookin, T.E., Jin, X., Chen, S., Assmann, S.M. (2011) Candidate GPCR signaling systems integrate multiple environmental signals in G-protein dependent and independent pathways. The 22nd International Conference on Arabidopsis Research. Madison, Wisconsin, USA, June 22-June 25.

67) Chen, Y., Yan, X., Chen, S. (2011) Exploring the molecular network of glucosinolate biosynthesis using bioinformatic tools. The 22nd International Conference on Arabidopsis Research. Madison, Wisconsin, USA, June 22-June 25.

66) Koh, J., Chen, S., Zhu, N., Soltis, P.S., Soltis, D.E. (2011) Comparative proteomics in the recently and recurrently formed allopolyploid Tragopogon mirus (Asteraceae) and its diploid parents. The 18th Biennial Plant Biology Symposium. Pennsylvania State University, State College, USA, May 18-21.

65) Chen, Y., Pang, Q., He, Y., Branstrom, I., Yi, S., Chen, S. (2011) Glucosinolate metabolic network delineated by metabolomic and proteomic analysis. Plant Molecular and Cellular Biology Annual Conference, Daytona Beach, May 6-7.

64) Parker, J., Zhu, N., Foele, M., Yi, S., Chen, S. (2011) Evolutionary Tug of War: Examining proteome regulation in tomato defense against Pseudomonas. Plant Molecular and Cellular Biology Annual Conference, Daytona Beach, May 6-7.

63) Foele, M., Parker, J., Chen, S. (2011) The effects of Pst and its virulence factors on stomatal movement in Tomato (Solanum lycopersicum). HHMI Undergraduate Research Symposium. University of Florida, April 21.

62) Zhu, M., Zhu, N., Jin, X., Assmann, S., Chen, S. (2011) Identification of redox sensitive proteins in Brassica napus guard cells. Keystone Symposia-Plant Abiotic Stress Tolerance Mechanisms, Water and Global Agriculture. Keystone, Colorado, USA, January 17-22.

61) Chen, Y., Yan, X., Chen, S. (2010) Bioinformatic analysis of molecular networks related to glucosinolate biosynthesis. 2010 NSF Research Day. Gainesville, Florida, October 25-26.

60) Zhu, M., Zhu, N., Jin, X., Chen, S. (2010) Identification of redox sensitive proteins in Brassica napus guard cells: new evidence for crosstalk between guard cell ABA and MeJA signaling pathways. Plant Biology 2010-the Annual Meeting of American Society of Plant Biologists. Montreal, Canada, July 31-August 4.

59) Chen, S., He, Y., Chen, L., Zhou, Y., Mawhinney, T., Chen, B., Kang, B., Hauser, B. (2010) Functional characterization of Arabidopsis isopropylmalate dehydrogenases reveals their important roles in gametophyte development. Plant Biology 2010-the Annual Meeting of American Society of Plant Biologists. Montreal, Canada, July 31-Aug 4.

58) Diaz, C., Chow, M., Chong, A., Zheng, R., Chen, S. (2010) Proteomics and mass spectrometry applications in biomedical research. Annual Meeting of the Association of Biomolecular Resource Facilities. Sacramento, CA, March 20 21.

57) Booy, A., Simons, B., Seymour, S.L., Zhu, M., Chen, S. (2010) Elucidation of methyl jasmonate signaling in Brassica napus guard cells by LC MALDI. Fifty eighth ASMS Conference on Mass Spectrometry. Salt Lake City, Utah, May 23 27.

56) Chen, Y., Dai, S., Wang, Y., Chen, S., Yan, X. (2009) Proteome and glucosinolate changes in leaves of Arabidopsis thaliana in response to methyljasmonate. Fifth Asia Pacific Conference on Chemical Ecology. Hawaii, Oct. 27-30.


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55) McClung, S., Chow, M., Chung, A., Zheng, R., Bryant, C., Zhu, N., Chen, S. (2009) Quantitative proteomic approaches in biomedical research. American Biological Resources Facility (ABRF) Conference. Memphis, Tennesse, Feb. 7-10.

54) Zhu, M., Dai, S., McClung, S., Chen, S. (2009) Comparative proteomics revealed functional specification of guard cells and mesophyll cells. ABRF Conference. Memphis, Tennesse, Feb. 7-10.

53) McClung, S., Chow, M., Chen, S. (2009) Quantitiave proteomic approaches in biomedical research. The second Moffitt Symposium on Mass Spectrometry. Tampa, Florida, Feb. 11-12.

52) Zhu, M., Dai, S., McClung, S., Chen, S. (2009) ITRAQ proteomics revealed functional specification of guard cells. The second Moffitt Symposium on Mass Spectrometry. Tampa, Florida, Feb. 11-12.

51) Alvarez, S., Zhu, M., Wilson, G., McClung, S., Chen, S. (2009) Comparative proteomics of redox regulated proteins. The second Moffitt Symposium on Mass Spectrometry. Tampa, Florida, Feb. 11-12.

50) McClung, S., Chow, M., Zheng, R., Chung, A., Bryant, C., Zhu, N., Chen, S. (2008) Proteomics and mass spectrometry applications in biomedical research. Florida Genetics 2008 Conference, University of Florida, Oct. 29-30.

49) He, Y., Chen, B., Abraham, L., Chen, S. (2008) Arabidopsis isopropylmalate dehydrogenase, an enzyme involved in leucine biosynthesis and methionine chain-elongation process of aliphatic glucosinolate biosynthesis. Florida Genetics 2008 Conference, University of Florida, Oct. 29-30.

48) He, Y., Zhu, M., Alvarez, S., Abraham, L., Chen, S. (2008) Functional characterization of Arabidopsis isopropylmalate isomerases implicated in the biosynthesis of methionine-derived glucosinolates. Florida Genetics 2008 Conference, University of Florida, Oct. 29-30.

47) Dai, S., Shi, Y., Sun, G., Chen, S. (2008) Proteomic analysis of leaves from alkali grass under salt stress. Florida Genetics 2008 Conference, University of Florida, Oct. 29-30.

46) Low, J.M., Chauhan, A.K., Gibson, D.S., Zhu, M., Chen, S., Rooney, M.E., Moore, T.L. (2008) Proteomic analysis of circulating immune complexes reveals disease-associated proteins. HUPO 7th Annual World Congress, Amsterdam, August 16 - 20, The Netherlands.

45) Zhu, M., Dai, S., McClung, S., Chen, S. (2008) Functional differentiation of Brassica napus guard cells and mesophyll cells revealed by comparative proteomics. Banff International Conference on Plant Metabolism, Banff, Canada, July 30 August 3.

44) He, Y., Alvarez, S., Chen, S. (2008) Functional characterization of an Arabidopsis isopropylmalate dehydrogenase involved in leucine and glucosinolate biosynthesis. Banff International Conference on Plant Metabolism, Banff, Alberta, Canada, July 30 August 3.

43) Alvarez, S., Wilson, G.H., Zhu, M., Chen, S. (2008) Identification of redox regulated proteins in response to methyl jasmonate in Arabidopsis shoots and roots using comparative proteomics. Banff International Conference on Plant Metabolism, Banff, Alberta, Canada, July 30 August 3.

42) He, Y., Zhu, M., Alvarez, S., Chen, S. (2008b) Arabidopsis isopropylmalate isomerase involved in methionine chain-elongation pathway of aliphatic


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glucosinolate biosynthesis. Plant Molecular and Cellular Biology Annual Conference, Jacksonville Beach, May 16-17.

41) He, Y., Hall, J., Chen, S. (2008a) Biochemical characterization of an Arabidopsis isopropylmalate dehydrogenase. Plant Molecular and Cellular Biology Annual Conference, Jacksonville Beach, May 16-17.

40) Zhu, M., Dai, S., McClung, S., Chen, S. (2008) Functional differentiation of Brassica napus guard cells and mesophyll cells revealed by comparative proteomics. Plant Molecular and Cellular Biology Annual Conference, Jacksonville, May 16-17.

39) Dai, S., Shi, Y., Sun, G., Chen, S. (2008) Proteomic analysis of leaves from alkali grass under salt stress. Plant Molecular and Cellular Biology Annual Conference, Jacksonville Beach, May 16-17.

38) Alvarez, S., Yan, He., Wang, Y., Chen, S. (2007a) Study of the glucosino-late-myrosinase defense system using Arabidospis suspensions cells in response to methyl jasmonate. The 24th International Plant Biology Symposium, University of Missouri, May 22-24.

37) Alvarez, S., Wilson, G., Zhu, M., Chen, S. (2007b) Proteomics of redox regulated proteins in methyl jasmonate treated plants. Florida Genetics Conference, University of Florida, Nov. 7-8.

36) He, Y., Walker, R., Alvarez, S., Chen, S. (2007) Functional characterization of 3-isopropylmalate dehydrogenase in Arabidopsis. Florida Genetics Conference, University of Florida, Nov. 7-8.

35) Wang, Y., Vijayvargiga, K., Godsmith, J., Chen, S. (2007) Characterization of myrosinases and interacting proteins. The 24th International Plant Biology Symposium, University of Missouri, May 22-24.

34) Chen, S., Sarry, E., Collum, R., Wang, E., Yuan, C., Rea, P.A. (2007) New properties of the glucosinolate-myrosinase defense system discovered by vacuolar proteomics. 18th International Conference on Arabidopsis Research, Beijing, China, June 20-23, 2007. poster 494 on p. 140

33) Chen, S., Fernandez, R.S., Lyver, E., Dancis, A., Rea, P.A. (2007) Functional characterization of Arabidopsis half-molecule ABC transporters implicated in iron homeostasis. 18th International Conference on Arabidopsis Research, Beijing, China, June 20-23, 2007. poster 537 on p. 152

32) Zhu, J., Alvarez, S., LeNoble, M., Marsh, E., Chen, S., Cho, I-J., Nguyen, H., Wu, Y., Sharp, R. (2007) Cell wall proteome in the maize primary root growth zone: region-specific responses to water deficit. XI International Cell Wall Meeting, Copenhagen, Denmark. August 12-17, 2007.

31) Wang, Y., Vijayvargiga, K., Godsmith, J., Chen, S. (2006) Functional characterization of myrosinase and interacting proteins in Arabidopsis. Florida Genetics Conference, University of Florida, Nov. 1, 2006.

30) Sharp, R., Zhu, J., Alvarez, S., LeNoble, M., Chen, S., Schachtman, D., Wu, Y., Tao, W., Ngugen, H. et al., (2006) Root growth maintenance during water deficit: physiology to cell wall proteomics - and back to physiology. ASA-CSSA-SSSA International Conference, Indianapolis, November 13, USA.

29) Jez, J., Cahoon, R., Bonner, E., Chen, S. (2005) Redox-Regulation of Glutathione Synthesis in Plants. ASBMB annual conference, San Diego, April 2-6, USA.


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28) Zhu, J., Alvarez, S., Chen, S., Schachtman, D., Wu, Y., Sharp, R.E. (2005) Cell wall proteome in the maize primary root growth zone. Plant Biology Conference, Seattle, July 16-20, USA.

27) Alvarez, S., Goodger, J., Marsh, E., Chen, S., Schachtman, D. (2005) Changes of the proteome of maize xylem sap in response to water stress. Plant Biology Conference, Seattle, July 16-20, USA.

26) Zhu, J., Alvarez, S., Marsh, E., LeNoble, M., Chen, S., Tao, W., Nguyen, H.T., Spollen, W.G., Springer, G.k., Wu, Y., Schachtman, D., Sharp, R.E. (2005) Cell wall proteome in the maize primary root growth zone: region-specific responses to water deficit. Missouri Life Sciences Week, Columbia, April 9, USA.

25) Collum, R., Chen, S., Jean-Emanuel, S., Liang, S., Peng, M., Su, Y., Yuan, C., Klionsky, D., Rea, P. (2005) Vacuomics: quantitative definition of vacuolar proteins in yeast and Arabidopsis. Plant Biology Conference, Boston, August 5-9, USA.

24) Speichinger, J., Taylor, N., Fauquet, C., Chen, S. (2005) Cassava root proteomics: protein identification and characterization. Proteome Society meeting, St. Louis, November 3-4.

23) Chen, S. (2005) Protein identification using direct infusion and nanoflow HPLC electrospray ionization mass spectrometry. 53rd. Annual Conference of American Society for Mass Spectrometry, San Antonio, June 5-9.

22) Chen, S., Speichinger, J. (2005) Large scale characterization of cassava root proteins involved in tuber formation. Proteome informatics workshop. Ann Arbor, June 23- 24.

21) Zhu, J.M., Wu, J., Chen, S., Schachtman, D., Sharp, R. (2005) Cell wall proteome in the maize primary root growth zone: region-specific responses to water deficit. Plant & Animal Genomes Conference, San Diego, California, Jan 15-19, 2005

20) Chen, S., Speichinger, J. (2004) Towards understanding biological systems through proteomics and mass spectrometry technologies. 6th Annual Fall Symposium of Danforth Center, Cellular mechanisms of plant development, St. Louis, Sept 24-25.

19) Herman, E.M., Rotter, K., Chen, S., Livingston, D.P. (2004) Enhancement of freezing tolerance by frost temperature involves complex biological mechanisms. 6th Annual Fall Symposium of Danforth Center, Cellular mechanisms of plant development, St. Louis, Sept 24-25.

18) Goodger, J., Sharp, R., Marsh, E., Chen, S., Asirvatham, V., Schachtman, D. (2004) Analysis of xylem sap constituents and implications for controlling water loss of maize under water stress. 6th Annual Fall Symposium of Danforth Center, Cellular mechanisms of plant development, St. Louis, Sept 24-25, 2004.

17) Chen, S., Collum, R., Sarry, J.E., Su, Y., Liang, S., Yuan, C.X., Klionsky, D.J., Rea, P.A. (2004) Vacuolar luminal proteomics of yeast and Arabidopsis. 52th. Annual Conference of American Society for Mass Spectrometry, Nashville, May 21-May 28

16) Chen, S. (2003) Proteomic analysis of plant vacuolar functions. 5th. Fall Annual Fall Symposium of Danforth Plant Science Center, October 17-18.

15) Chen, S., Liang, S., Peng, M., Yuan, C.X., Klionsky, D.J., Rea, P.A. (2003) Vacuomics: definition of the vacuolar proteome of yeast and Arabidopsis. Pan-American Plant Membrane Biology Workshop, Cuernavaca, Mexico. May 28-June 1

14) Peng, M., Chen, S., Sánchez-Fernández, R., Lu, Y., Gu, H., Rea, P.A. (2003) The Arabidopsis ATP-binding-cassette transporter, AtMRP1, catalyzes the vacuolar transport of folates and confers tolerance to methotrexate in the intact plant. Pan-American Plant Membrane Biology Workshop, Cuernavaca, Mexico. May 28-June 1


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13) Peng, M., Chen, S., Sánchez-Fernández, R., Gu, H., Rea, P.A. (2003) An Arabidopsis plasma membrane-localized multispecific ATP-binding cassette transporter, AtMRP4, extrudes glutathione-conjugates and confers tolerance to organic xenobiotics. Pan-American Membrane Biology Workshop, Cuernavaca, Mexico. May 28-June 1

12) Chen, S., Petersen, B.L., Olsen, C.E., Schulz, A., Halkier, B.A. (2001) Long-distance transport of glucosinolates in Arabidopsis thaliana. 12th International Workshop on Plant Membrane Biology, Wisconsin. August 11-16

11) Peng, M., Sanchez-Fernandez, R., Chen, S., Rea, P.A. (2001) The Arabidopsis whole molecule ABC protein AtMRP4 is a folic acid transporter. 12th International Workshop on Plant Membrane Biology, Wisconsin. August 11-16

10) Rea, P., Sanchez-Fernandez, R., Peng, M., Chen, S. (2001) The Arabidopsis ABC transporters. 12th International Workshop on Plant Membrane Biology, Wisconsin. August 11-16.

9) Chen, S., Petersen, B.L., Halkier, B.A. (2000) Biosynthesis of radiolabelled glucosinolate and the application in biological studies of glucosinolate metabolism and transport. Fifth International Symposium on P450 Biodiversity. Elsinore, Denmark. July 2-6

8) Chen, S. (2000) Plant Signaling. Pennsylvanina State University, USA. May 17-21 7) Chen, S., Halkier, B.A. (1999) Functional characterization of the myrosinase MYR1

from Brassica napus in Saccharomyces cerevisiae. European Research conference on Plant Cell Biology and Biothechnology Applications, Rolduc, Netherlands.

6) Chen, S., Li, L., Jiao, X.Z. (1999) Effect of osmotic shock on protein phosphorylation. European Research Conference on Plant Cell Biology and Biothechnology Applications, Rolduc, Netherlands.

5) Du, L., Wittstock, U., Chen, S., Halkier, B.A. (1998) Transport of glucosinolates from silique wall to seed in Brassica ssp. 11th International Workshop on Plant Membrane Biology, Cambridge, UK.

4) Chen, S. (1995) Recent advancement in plant plasma membrane redox system. Annual Cell Biology Conference, Chinese Society for Cell Biology, Shanghai, China.

3) Chen, S. (1995) Application of flow cytometery in plant cell research. No. 6 National Conference of Cell Biology, Chinese Society for Cell Biology, Huangshan, China.

2) Chen, S., Li, L., Yan, C.C., Jiao, X.Z. (1995) The role of plasma membrane redox system in potassium transport of Dunaliella salina cells. No. 6 National Conference of Cell Biology, Chinese Society for Cell Biology, Huangshan, China.

1) Chen, S., Jiao, X.Z. (1994) Osmotic signal transduction in Dunaliella salina and implications in plant salt stress regulation. National Plant Environmental Physiology Conference, Fuzhou, China.

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SIXUE CHEN - UF Biology - University of Florida