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© 1989 - FOTOS/ LIANA JOHN Data Issues in the Data Issues in the Large Scale Biosphere-Atmosphere Experiment in Amazonia Large Scale Biosphere-Atmosphere Experiment in Amazonia Carlos A.Nobre Center for Weather Forecasting and Climate Studies - CPTEC/INPE Inter-American Workshop on Environmental Data Access Inter-American Workshop on Environmental Data Access Campinas, Brazil Campinas, Brazil 4 March 2004 4 March 2004

© 1989 - FOTOS/ LIANA JOHN Data Issues in the Large Scale Biosphere-Atmosphere Experiment in Amazonia Carlos A.Nobre Center for Weather Forecasting and

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Page 1: © 1989 - FOTOS/ LIANA JOHN Data Issues in the Large Scale Biosphere-Atmosphere Experiment in Amazonia Carlos A.Nobre Center for Weather Forecasting and

© 1

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Data Issues in the Data Issues in the Large Scale Biosphere-Atmosphere Experiment in AmazoniaLarge Scale Biosphere-Atmosphere Experiment in Amazonia

Carlos A.Nobre Center for Weather Forecasting and Climate Studies - CPTEC/INPE

Inter-American Workshop on Environmental Data AccessInter-American Workshop on Environmental Data AccessCampinas, BrazilCampinas, Brazil

4 March 20044 March 2004

Page 2: © 1989 - FOTOS/ LIANA JOHN Data Issues in the Large Scale Biosphere-Atmosphere Experiment in Amazonia Carlos A.Nobre Center for Weather Forecasting and

How Amazonia functions currently as a regional entity with respect to the natural cycles of water, energy, carbon, nutrient and trace-gases?

How will changes in land use and climaten affect the biological, chemical and physical functioning of Amazonia, including its sustainability and influence on global climate?

The two overarching questions of LBAThe two overarching questions of LBA

Page 3: © 1989 - FOTOS/ LIANA JOHN Data Issues in the Large Scale Biosphere-Atmosphere Experiment in Amazonia Carlos A.Nobre Center for Weather Forecasting and

LBA LINKAGESLBA LINKAGES PHYSICAL CLIMATE SYSTEM:

Water and Energy

CARBON STORAGE AND EXCHANGE

ATMOSPHERIC CHEMISTRY

BIOGEOCHEMISTRY:Trace Gases and Nutrients

LAND SURFACE HYDROLOGY AND WATER CHEMISTRY

LAND USE/LAND COVERHUMAN DIMENSIONS

Page 4: © 1989 - FOTOS/ LIANA JOHN Data Issues in the Large Scale Biosphere-Atmosphere Experiment in Amazonia Carlos A.Nobre Center for Weather Forecasting and

MesoscaleExperiments

Primary Research Areas

Secondary Research Areas(with Flux Towers)

Ecoclimatic Transects

MANAUS

BRASÍLIA

PARÁ

RONDÔNIA

SANTARÉM

Sites to be established

RESEARCHRESEARCHSTRATEGY I:STRATEGY I:ECOLOGICALECOLOGICALTRANSECTSTRANSECTS

Page 5: © 1989 - FOTOS/ LIANA JOHN Data Issues in the Large Scale Biosphere-Atmosphere Experiment in Amazonia Carlos A.Nobre Center for Weather Forecasting and

Area of Study

VegetationA, Aa, Ab, AsC, CsD, Da, Db, Dm, DsF, Fa, FsLO, La, Ld, LgONP, Pa, PfS, SM, SN, SO, ST, Sa, Sd, Sg, SpTd, TpWATERrm

N

EW

S

-45,-15

-45,-10

-45,0

-50,5-55,5-60,5-65,5-70,5

-70,0

VegetationTypes in Brazilian AmazoniaData source: Radam

LBA ECOLOGICAL TRANSECTSLBA ECOLOGICAL TRANSECTS

200 100 0 200 M

100 100 0 200 km

Scale 1:16.000.000Projection

longitude of central meridian - 57 00 00

Page 6: © 1989 - FOTOS/ LIANA JOHN Data Issues in the Large Scale Biosphere-Atmosphere Experiment in Amazonia Carlos A.Nobre Center for Weather Forecasting and

100-10000 kmBacia Amazônica[obs. contínuas]

-1 kmSítios para as Torres[CIC + obs. contínuos]

1-10 mEstudos de processosSítios para validação

Sítios para validação Sítios de estudos de processos

Sítios de validaçãoAlometria/BiometriaAlvos do SR

Estudo de processosFisiologiaÓtica de Fito-elementosCâmara de soloIsótoposHidráulica do soloQuímica do solo

Medições de fluxo em torreQuímica AtmosféricaHidrologia de Micro BaciasQuímica do escoamento

Modelos de escala de baciasAnálise de dados(4DDA)Produtos de SR de satéliteTranseções extensivas por avião Transeções ecológica

10-100 km2 Áreas de estudoRondôniaPará[CIC + obs. Contínuas]

Validação dos algoritmos dos satélitesMeteorologia de mesoescalaHidrologia de sub-baciasFluxos medidos na superfície e por avião (H, ,CO2, gases-traços, R )Validação do SR de superfície e de aviõesQuímica da Atmosfera

E RESEARCH RESEARCH STRATEGY II: STRATEGY II: SCALING UPSCALING UP

Page 7: © 1989 - FOTOS/ LIANA JOHN Data Issues in the Large Scale Biosphere-Atmosphere Experiment in Amazonia Carlos A.Nobre Center for Weather Forecasting and

LBA Research SitesLBA Research Sites““Tour”Tour”

Page 8: © 1989 - FOTOS/ LIANA JOHN Data Issues in the Large Scale Biosphere-Atmosphere Experiment in Amazonia Carlos A.Nobre Center for Weather Forecasting and

LBA Research Sites LBA Research Sites Tour continued ...Tour continued ...

Rancho Grande

Rebio-Jaru

Page 9: © 1989 - FOTOS/ LIANA JOHN Data Issues in the Large Scale Biosphere-Atmosphere Experiment in Amazonia Carlos A.Nobre Center for Weather Forecasting and

Fazenda Nossa Senhora

Fazenda Nossa Senhora

Santarém

LBA Research Sites LBA Research Sites Tour continued ...Tour continued ...

Page 10: © 1989 - FOTOS/ LIANA JOHN Data Issues in the Large Scale Biosphere-Atmosphere Experiment in Amazonia Carlos A.Nobre Center for Weather Forecasting and

Use of atmospheric researchAircraft in the Wet Season Atmospheric Mesoscale Campaign – LBA WET AMCJan-March 1999, Rondonia

Page 11: © 1989 - FOTOS/ LIANA JOHN Data Issues in the Large Scale Biosphere-Atmosphere Experiment in Amazonia Carlos A.Nobre Center for Weather Forecasting and

SOUTH AMERICAN INSTITUTIONS PARTICIPATING IN LBA

Page 12: © 1989 - FOTOS/ LIANA JOHN Data Issues in the Large Scale Biosphere-Atmosphere Experiment in Amazonia Carlos A.Nobre Center for Weather Forecasting and

LBA in numbers LBA in numbers • 130 studies (30% completed) covering the 7 LBA themes• Over 150 institutions from all Amazonian countries, US and EU• Over 1200 participants (about 500 students; 160 PhD students)• To date over 400 peer-reviewed articles in scientific literature

Page 13: © 1989 - FOTOS/ LIANA JOHN Data Issues in the Large Scale Biosphere-Atmosphere Experiment in Amazonia Carlos A.Nobre Center for Weather Forecasting and

Variety of multidisciplinary in situ data from over 50 research sites (< 10 Terabytes); researcher´s responsibility to deliver research-quality data on a timely fashion.

Satellite data (large volumes of tens of Terabytes).

Gridded data from an array of numerical models (large volumes of tens of Teraybites)

LBA Data Diversity ....LBA Data Diversity ....

Page 14: © 1989 - FOTOS/ LIANA JOHN Data Issues in the Large Scale Biosphere-Atmosphere Experiment in Amazonia Carlos A.Nobre Center for Weather Forecasting and

Technical interoperabilitty of LBA data across software and hardware systems.

Semantic interoperability of LBA data across disciplines and languages.

Facilitating interdisciplinary and international access to LBA data resources.

Scientific and technical requirements for long-term preservation and accessibility of LBA data.

The scientific ‘culture’ of data ownership

Scientific and Technical IssuesScientific and Technical Issues

Page 15: © 1989 - FOTOS/ LIANA JOHN Data Issues in the Large Scale Biosphere-Atmosphere Experiment in Amazonia Carlos A.Nobre Center for Weather Forecasting and

LBA-DIS

The LBA Data and Information System is a data management system actingas a repository for all the LBA data. The data is quality checked,rendered to a common format, and made available to the LBA community asrapidly as possible and transferred to a permanent archive. Tofacilitate use by non-LBA investigators, each data set is carefullydocumented and linked in the orderly framework, so that it remainsuseful after the project has been completed.

The LBA-DIS main components are the Beija-flor and LBA Metadata Editor (LME) Systems.

Page 16: © 1989 - FOTOS/ LIANA JOHN Data Issues in the Large Scale Biosphere-Atmosphere Experiment in Amazonia Carlos A.Nobre Center for Weather Forecasting and

LBA Data Policy• Data generated by LBA will become public domain and will be permanently archived in Brazil. The

LBA Data Information System (DIS) will provide tools for documenting, storing, searching and distributing these data.

• All data collected in the field must be sent to LBA-DIS no longer than 2 years after data collection.• All LBA data should be available to all LBA researchers. Exceptions may be made in the case of raw or

preliminary data, for which distribution can be restricted for a limited period of time.• There will be no periods of exclusive rights to publish LBA results. Exceptions are possible for students

where graduation requirements prohibit publication of results prior to acceptance of a Thesis.• Individual investigators may make their own data more widely available at any time. Outside

investigators may be given access to this data as soon as the data have been submitted to the LBA DIS, with some prudent time period for quality control.

• Each LBA module is responsible for establishing a time schedule for data exchange within the projects and data delivery to LBA DIS. The time limit for data delivery to LBA-DIS will be no more than one year.

• Data should be analyzed cooperatively by all scientists involved in obtaining them. Especially cooperation across disciplines and among South American, European and North American researchers should be encouraged. Publications resulting from work under LBA should be co-authored by all scientists who have participated substantially in the work, unless some participants choose not to be on the authors’ list. The same applies to presentations at meetings. Special effort by each non-South American researcher should be put into integration of South American researchers in their work and in the publication of the results.

• Where data are used for modeling or integrating studies, the scientist collecting the data will be credited appropriately, either by co-authorship or by citation. Investigators using data provided by another investigator as a substantial component of a paper should offer the originating investigator co-authorship. In cases where data from other investigators are a minor contribution to a paper, the data should be referenced by a citation. Users of the data will always have to state the source of the data.

• Specific constraints for certain data sources (e.g. satellite products, global meteorological analysis, etc) may be subject to copyright restrictions which are more limiting than this LBA data policy. It is up to the LBA-OIC to take the first steps in making contacts with officials and institutions in order to prepare specific agreements that will allow LBA scientists to use the data.

• If conflicts do occur, they should be resolved at the level of the LBA modules.

Page 17: © 1989 - FOTOS/ LIANA JOHN Data Issues in the Large Scale Biosphere-Atmosphere Experiment in Amazonia Carlos A.Nobre Center for Weather Forecasting and

What is Beija-flor?

• A Web-based metadata search and data retrieval system. • A system designed for tracking scientific metadata.• A standards-based system.• A “virtual system” with data and metadata distributed over the Internet under the control of investigators.• A system providing rapid (nightly) updates.

Page 18: © 1989 - FOTOS/ LIANA JOHN Data Issues in the Large Scale Biosphere-Atmosphere Experiment in Amazonia Carlos A.Nobre Center for Weather Forecasting and

What’s Beija-flor Good For?• A Metadata search and data retrieval system. Especially where the following may be applicable:

• International metadata standards• “Light” database apps (skills DB, not payroll).• A Web layer to a legacy database.• A “Roll Up” interface to multiple heterogeneous databases.• Making data and documentation searchable.• Topical search engines (e.g., Biomass).• Using the Internet as its repository.

Page 19: © 1989 - FOTOS/ LIANA JOHN Data Issues in the Large Scale Biosphere-Atmosphere Experiment in Amazonia Carlos A.Nobre Center for Weather Forecasting and

LBA Overall Status:Metadata Registered in Beija-flor

260

40

0

62

8

118

63

133

83

152

80

231

92

325

100

379

207

413

211

418

211

0

50

100

150

200

250

300

350

400

450

06/99 01/00 06/00 10/00 02/01 05/01 11/01 05/02 11/02 05/03 11/03

# of data sets registered

# of posters registered

N=629

Page 20: © 1989 - FOTOS/ LIANA JOHN Data Issues in the Large Scale Biosphere-Atmosphere Experiment in Amazonia Carlos A.Nobre Center for Weather Forecasting and

LBA Overall Status:Data Volume Archived at LBA-DIS / CPTEC

4.00.5 0.6

14.8

8.7

1.1

69.0

8.9

1.2

79.6

9.2

1.3

0

10

20

30

40

50

60

70

80

Gig

abyt

es

11/01 11/02 05/03 11/03

Unrestricted DataRestricted DataPosters