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GLYCOLYSIS University of Babylon College of pharmacy 3 rd class second semester Biochemistry - carbohydrate metabolism Dr. Abdulhussien M. K. Aljebory 2014 2015 08-Mar-15 1

GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

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Page 1: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

GLYCOLYSIS

University of Babylon

College of pharmacy

3rd class – second semester

Biochemistry - carbohydrate metabolism

Dr. Abdulhussien M. K. Aljebory

2014 – 2015 08-Mar-15 1

Page 2: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

GLYCOLYSISThere are two types of metabolism :

1-Aerobic respiration is relate to the structure of a mitochondrion.

Glycolysis and Krebs cycle synthesis 10% of ATP.

Electron transport chain synthesis 90% of ATP.

2- an aerobic respiration - formation of lactate .

Respiration involves three stages:

1. Glycolysis harvests chemical energy by oxidizing glucose to pyruvate and produces

about 5% of ATP (in cytoplasm)

2. Krebs cycle completes the energy-yielding oxidation of organic molecules and

produces about 5% of ATP (in mitochondrial matrix)

3. Electron transport chain to synthesis ATP and produces about 90% of ATP (inner

mitochondrial membrane).

Cellular respiration generates many ATP molecules. For each sugar molecule it oxidizes (38 ATP molecule).

08-Mar-15 2

Page 3: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

Respiration involves glycolysis, the Krebs cycle, and electron transport

• Respiration occurs in three metabolic stages: glycolysis, the Krebs cycle, and the electron transport chain and oxidative phosphorylation.

• Glycolysis occurs in the cytoplasm.– It begins catabolism by breaking glucose into two molecules

of pyruvate.• The Krebs cycle occurs in the mitochondrial matrix.

– It degrades pyruvate to carbon dioxide.

• Several steps in glycolysis and the Krebs cycle transfer electrons from substrates to NAD+, forming NADH.

• NADH passes these electrons to the electron transport chain.

08-Mar-15 3

Page 4: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

Phosphorylation

• I- Substrate-level phosphorylation:• Some ATP is generated in glycolysis and in Krebs

cycle by Substrate-level phosphorylation. phosphate group is transferred from an organic molecule (the substrate) to ADP, forming 10% ATP (4 ATP).

• II- Oxidative phosphorylation:

• As electrons passed along the chain, their energy stored in the mitochondrion in a form that can be used to synthesize the rest 90% of the ATP ATP (34 ATP).

• via Oxidative phosphorylation.• Ultimately 38 ATP are produced per mole of glucose that

is degraded to carbon CO2 and H2O by respiration.

08-Mar-15 4

Page 5: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

General aspect

A. More than 60% of our foods are carbohydrates. Starch,

glycogen, sucrose, lactose and cellulose are the chief

carbohydrates in our food. Before intestinal absorption, they

are hydrolysed to hexose sugars (glucose, galactose and

fructose).

B. A family of a glycosidases that degrade carbohydrate into their

monohexose components catalyzes hydrolysis of glycocidic

bonds. These enzymes are usually specific to the type of bond

to be broken.

08-Mar-15 5

Page 6: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

Digestion of carbohydrate by salivary α -amylase (ptylin) in the mouth:

A. This enzyme is produced by salivary glands. Its optimum pH is 6.7.

B. It is activated by chloride ions (cl-).

C. It acts on cooked starch and glycogen breaking α 1-4 bonds, converting them into maltose [a disaccharide containing two glucose molecules attached by α 1-4 linkage]. This bond is not attacked by -amylase.

• Because both starch and glycogen also contain 1-6 bonds, the resulting digest contains isomaltose [a disaccharide in which two glucose molecules are attached by 1-6 linkage].

• E. Because food remains for a short time in the mouth, digestion of starch and glycogen may be incomplete and gives a partial digestion products called: starch dextrins (amylodextrin, erythrodextrin and achrodextrin).

• F. Therefore, digestion of starch and glycogen in the mouth gives maltose, isomaltose and starch dextrins.

08-Mar-15 6

Page 7: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

• III. ln the stomach: carbohydrate digestion stops temporarily due to the high acidity which inactivates the salivary - amylase.

• IV. Digestion of carbohydrate by the pancreatic - amylase small intestine in the small intestine.

• A. α-amylase enzyme is produced by pancreas and acts in small intestine. Its optimum pH is 7.1.

• B. It is also activated by chloride ions.

• C. It acts on cooked and uncooked starch, hydrolysing them into maltose and isomaltose.

• A. The final digestive processes occur at the small intestine and include the action of several disaccharidases. These enzymes are secreted through and remain associated with the brush border of the intestinal mucosal cells.

08-Mar-15 7

Page 8: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

• B. The disaccharidases include:• 1. Lactase (β-galactosidase) which hydrolyses lactose into two

molecules of glucose and galactose:• Lactase • Lactose Glucose + Galactose• 2. Maltase ( α-glucosidase), which hydrolyses maltose into two

molecules of glucose:• Maltase • Maltose Glucose + Glucose• 3. Sucrose (α-fructofuranosidase), which hydrolyses sucrose into two

molecules of glucose and fructose:• Sucrose• Sucrose Glucose + Fructose• 4. α - dextrinase (oligo-1,6 glucosidase) which hydrolyze (1 ,6) linkage

of isomaltose.• Dextrinase• Isomaltose Glucose + Glucose

08-Mar-15 8

Page 9: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

• VI. Digestion of cellulose:

• A. Cellulose contains β(1-4) bonds between glucose

molecules.

• B. In humans, there is no β (1-4) glucosidase that can

digest

• such bonds. So cellulose passes as such in stool.

• C. Cellulose helps water retention during the passage

of food

• along the intestine producing larger and softer

feces

• preventing constipation.

08-Mar-15 9

Page 10: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

Absorptions: introduction

• A.The end products of carbohydrate digestion are monosaccharides:glucose, galactose and fructose. They are absorbed from the jejunum toportal veins to the liver, where fructose and galactose are transformedinto glucose.

• B.Two mechanisms are responsible for absorption of monosaccharides: active transport (against concentration gradient i.e. from low to high concentration) and passive transport (by facilitated diffusion).

• C. For active transport to take place, the structure of sugar should have:1. Hexose ring.• 2. OH group at position 2 at the right side. Both of which are present • in glucose and galactose. Fructose, which does not contain -OH • group to the right at position 2 is absorbed more slowly than • glucose and galactose by passive diffusion (slow process).• 3. A methyl or a substituted methyl group should be present at • carbon 5.

08-Mar-15 10

Page 11: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

• II. Mechanisms of absorption:

• A. Active transport:

• 1. Mechanism of active transport:

• a) In the cell membrane of the intestinal cells, there is a mobile

• carrier protein called sodium dependant glucose transporter

• (SGL T-1) It transports glucose to inside the cell using

• energy. The energy is derived from sodium-potassium

• pump. The transporter has 2 separate sites, one for sodium

• and the other for glucose. It transports them from the

• intestinal lumen across cell membrane to the cytoplasm.

• Then both glucose and sodium are released into the

• cytoplasm allowing the carrier to return for more transport

• of glucose and sodium.

08-Mar-15 11

Page 12: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

• b) The sodium is transported from high to low concentration

• (with concentration gradient) and at the same time causes the

• carrier to transport glucose against its concentration gradient.

• The Na+ is expelled outside the cell by sodium pump. Which

• needs ATP as a source of energy. The reaction is catalyzed by

• an enzyme called "Adenosine triphosphatase (ATPase)".

• Active transport is much more faster than passive transport.

• c) Insulin increases the number of glucose transporters in

• tissues containing insulin receptors e.g. muscles and adipose

• tissue.

08-Mar-15 12

Page 13: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

• 2. Inhibitors of active transport:

• a) Ouabin (cardiac glycoside): Inhibits adenosine triphosphatase

• (ATPase) necessary for hydrolysis of ATP that produces energy

• of sodium pump.

• b) Phlorhizin; Inhibits the binding of sodium in the carrier protein.

• B. Passive transport (facilitated diffusion):

• Sugars pass with concentration gradient i.e. from high to low

• concentration. It needs no energy. It occurs by means of a sodium

• independent facilitative transporter (GLUT -5). Fructose and

• pentoses are absorbed by this mechanism. Glucose and

• galactose can also use the same transporter if the concentration

• gradient is favorable.

• C. There is also sodium – independent transporter (GLUT-2), that

• is facilitates transport of sugars out of the cell i.e. to circulation.

08-Mar-15 13

Page 14: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

• III. Defects of carbohydrate digestion and absorption:• A. Lactase deficiency = lactose intolerance:• 1. Definition:

• a) This is a deficiency of lactase enzyme which digest lactose into

• glucose and galactose

• b) It may be:

• (i) Congenital: which occurs very soon after birth (rare).

• (ii) Acquired: which occurs later on in life (common).

• 2. Effect: The presence of lactose in intestine causes:

• a) Increased osmotic pressure: So water will be drawn from the tissue

• (causing dehydration) into the large intestine (causing diarrhea).

• b) Increased fermentation of lactose by bacteria: Intestinal bacteria

• ferment lactose with subsequent production of CO2 gas. This causes

• distention and abdominal cramps.

• c) Treatment: Treatment of this disorder is simply by removing lactose

• (milk) from diet.

08-Mar-15 14

Page 15: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

• B. Sucrose deficiency:• A rare condition, showing the signs and symptoms of lactase deficiency. It

• occurs early in childhood.

• C. Monosaccharide malabsorption:• This is a congenital condition in which glucose and galactose are absorbed

• only slowly due to defect in the carrier mechanism. Because fructose is not

• absorbed by the carrier system, its absorption is normal.

• IV. Fate of absorbed sugars:• Monosaccharides (glucose, galactose and fructose) resulting from

carbohydrate digestion are absorbed and undergo the following:

• A. Uptake by tissues (liver):• After absorption the liver takes up sugars, where galactose and fructose

are converted into glucose.

• B. Glucose utilization by tissues: • Glucose may undergo one of the following fate:

08-Mar-15 15

Page 16: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

• 1. Oxidation: through

• a) Major pathways (glycolysis and Krebs' cycle) for production of energy.

• b) Hexose monophosphate pathway: for production of ribose, deoxyribose

• and NADPH + H+

• c) Uronic acid pathway, for production of glucuronic acid, which is used in

• detoxication and enters in the formation of mucopolysaccharide.

• 2. Storage: in the form of:

• a) Glycogen: glycogenesis.

• b) Fat: lipogenesis.

• 3. Conversion: to substances of biological importance:

• a) Ribose, deoxyribose RNA and DNA.

• b) Lactose milk.

• c) Glucosamine, galactosamine mucopolysaccharides.

• d) Glucoronic acid mucopolysaccharides.

• e) Fructose in semen.

08-Mar-15 16

Page 17: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

Glucose Oxidation

• I. Glycolysis (Embden Meyerhof Pathway):

• A. Definition:

• 1. Glycolysis means oxidation of glucose to give pyruvate (in the

• presence of oxygen) or lactate (in the absence of oxygen).

• B. Site:

• cytoplasm of all tissue cells, but it is of physiological importance in:

• 1. Tissues with no mitochondria: mature RBCs, cornea and lens.

• 2. Tissues with few mitochondria: Testis, leucocytes, medulla of the

• kidney, retina, skin and gastrointestinal tract.

• 3. Tissues undergo frequent oxygen lack: skeletal muscles especially

• during exercise.

08-Mar-15 17

Page 18: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

• C. Steps:

• Stages of glycolysis

• 1. Stage one (the energy requiring stage):

• a) One molecule of glucose is converted into two molecules of

• glycerosldhyde-3-phosphate.

• b) These steps requires 2 molecules of ATP (energy loss)

• 2. Stage two (the energy producing stage(:

• a) The 2 molecules of glyceroaldehyde-3-phosphate are converted into

• pyruvate (aerobic glycolysis) or lactate (anaerobic glycolysis(.

• b) These steps produce ATP molecules (energy production).

• D. Energy (ATP) production of glycolysis:

• ATP production = ATP produced - ATP utilized

08-Mar-15 18

Page 19: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

Glycolysis takes place in the cytosol of cells.

Glucose enters the Glycolysis pathway by conversion to glucose-6-phosphate.

Initially there is energy input corresponding to cleavage of two ~P bonds of ATP.

H O

OH

H

OHH

OH

CH2OPO32

H

OH

H

1

6

5

4

3 2

glucose-6-phosphate

08-Mar-15 19

Page 20: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

H O

OH

H

OHH

OH

CH2OH

H

OH

H H O

OH

H

OHH

OH

CH2OPO32

H

OH

H

23

4

5

6

1 1

6

5

4

3 2

ATP ADP

Mg2+

glucose glucose-6-phosphate

Hexokinase

1. Hexokinase catalyzes:

Glucose + ATP glucose-6-P + ADP

The reaction involves nucleophilic attack of the C6 hydroxyl O of glucose on P of the terminal phosphate of ATP.

ATP binds to the enzyme as a complex with Mg++.08-Mar-15 20

Page 21: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

First Phase of Glycolysis

The first reaction - phosphorylation of glucose

• Hexokinase or glucokinase

• This is a priming reaction - ATP is consumed here in order to get more later

• ATP makes the phosphorylation of glucose spontaneous

• Be SURE you can interconvert Keq and standard state free energy change

• Be SURE you can use Eq. 3.12 to generate far right column of Table 19.1

08-Mar-15 21

Page 22: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

Hexokinase1st step in glycolysis; G large,

negative• Hexokinase (and glucokinase) act to phosphorylate

glucose and keep it in the cell

• Km for glucose is 0.1 mM; cell has 4 mm glucose

• So hexokinase is normally active!

• Glucokinase (Kmglucose = 10 mM) only turns on when

cell is rich in glucose

• Hexokinase is regulated - allosterically inhibited by (product) glucose-6-P - but is not the most important site of regulation of glycolysis - Why?

08-Mar-15 22

Page 23: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

Energy production of glycolysis:

Net energyATP utilizedATP produced

2 ATP2ATP

From glucose to

glucose -6-p.

From fructose -6-p to

fructose 1,6 p.

4 ATP

(Substrate level

phosphorylation)

2ATP from 1,3 DPG.

2ATP from

phosphoenol pyruvate

In absence of oxygen

(anaerobic glycolysis)

6 ATP

Or

8 ATP

2ATP

-From glucose to

glucose -6-p.

From fructose -6-p to

fructose 1,6 p.

4 ATP

(substrate level

phosphorylation)

2ATP from 1,3 BPG.

2ATP from

phosphoenol

pyruvate.

In presence of oxygen

(aerobic glycolysis)

+ 4ATP or 6ATP

(from oxidation of 2

NADH + H in

mitochondria).

08-Mar-15 23

Page 24: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

• E. oxidation of extramitochondrial NADH+H+:• 1. cytoplasmic NADH+H+ cannot penetrate mitochondrial membrane,

• however, it can be used to produce energy (4 or 6 ATP) by respiratory

• chain phosphorylation in the mitochondria.

• 2. This can be done by using special carriers for hydrogen of NADH+H+

• These carriers are either dihydroxyacetone phosphate (Glycerophosphate

• shuttle) or oxaloacetate (aspartate malate shuttle).

• a) Glycerophosphate shuttle:

• 1) It is important in certain muscle and nerve cells.

• 2) The final energy produced is 4 ATP.

• 3) Mechanism:

• - The coenzyme of cytoplasmic glycerol-3- phosphate dehydrogenase

• is NAD+.

• - The coenzyme of mitochodrial glycerol-3-phosphate dehydogenase is

• FAD.

• - Oxidation of FADH, in respiratory chain gives 2 ATP. As glycolysis

• gives 2 cytoplasmic NADH + H+ 2 mitochondrial FADH, 2 x 2

• ATP = 4 ATP.

• b) Malate – aspartate shuttle:

• 1) It is important in other tissues patriculary liver and heart.

• 2) The final energy produced is 6 ATP.

08-Mar-15 24

Page 25: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

Differences between aerobic and anaerobic glycolysis:

AnaerobicAerobic

LactatePyruvate 1. End product

2 ATP 6 or 8 ATP2 .energy

Through Lactate

formation

Through respiration

chain in mitochondria

3. Regeneration of

NAD+

Not available as lactate

is cytoplasmic substrate

Available and 2 Pyruvate

can oxidize to give 30

ATP

4. Availability to TCA in

mitochondria

08-Mar-15 25

Page 26: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

2. Phosphoglucose Isomerase catalyzes:

glucose-6-P (aldose) fructose-6-P (ketose)

The mechanism involves acid/base catalysis, with ring opening, isomerization via an enediolate intermediate, and then ring closure. A similar reaction catalyzed by Triosephosphate Isomerase will be presented in detail.

H O

OH

H

OHH

OH

CH2OPO32

H

OH

H

1

6

5

4

3 2

CH2OPO32

OH

CH2OH

H

OH H

H HO

O

6

5

4 3

2

1

glucose-6-phosphate fructose-6-phosphate

Phosphoglucose Isomerase

08-Mar-15 26

Page 27: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

3. Phosphofructokinase catalyzes:

fructose-6-P + ATP fructose-1,6-bisP + ADP

This highly spontaneous reaction has a mechanism similar to that of Hexokinase.

The Phosphofructokinase reaction is the rate-limiting stepof Glycolysis.

The enzyme is highly regulated, as will be discussed later.

CH2OPO32

OH

CH2OH

H

OH H

H HO

O

6

5

4 3

2

1 CH2OPO32

OH

CH2OPO32

H

OH H

H HO

O

6

5

4 3

2

1

ATP ADP

Mg2+

fructose-6-phosphate fructose-1,6-bisphosphate

Phosphofructokinase

08-Mar-15 27

Page 28: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

Phosphoglucoisomerase

Glucose-6-P to Fructose-6-P

• Why does this reaction occur??

– next step (phosphorylation at C-1) would be tough for hemiacetal -OH, but easy for primary -OH

– isomerization activates C-3 for cleavage in aldolasereaction

• Ene-diol intermediate in this reaction

• Be able to write a mechanism!08-Mar-15 28

Page 29: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

4. Aldolase catalyzes: fructose-1,6-bisphosphate

dihydroxyacetone-P + glyceraldehyde-3-P

The reaction is an aldol cleavage, the reverse of an aldolcondensation.

Note that C atoms are renumbered in products of Aldolase.

6

5

4

3

2

1CH2OPO32

C

C

C

C

CH2OPO32

O

HO H

H OH

H OH

3

2

1

CH2OPO32

C

CH2OH

O

C

C

CH2OPO32

H O

H OH+

1

2

3

fructose-1,6- bisphosphate

Aldolase

dihydroxyacetone glyceraldehyde-3- phosphate phosphate

Triosephosphate Isomerase

08-Mar-15 29

Page 30: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

A lysine residue at the active site functions in catalysis.

The keto group of fructose-1,6-bisphosphate reacts with the e-amino group of the active site lysine, to form a protonated Schiff base intermediate.

Cleavage of the bond between C3 & C4 follows.

CH2OPO3

2

C

CH

C

C

CH2OPO32

NH

HO

H OH

H OH

(CH2)4 Enzyme

6

5

4

3

2

1

+

Schiff base intermediate of Aldolase reaction

H3N+

C COO

CH2

CH2

CH2

CH2

NH3

H

lysine

08-Mar-15 30

Page 31: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

5. Triose Phosphate Isomerase (TIM) catalyzes:

dihydroxyacetone-P glyceraldehyde-3-P

Glycolysis continues from glyceraldehyde-3-P. TIM's Keq

favors dihydroxyacetone-P. Removal of glyceraldehyde-3-P by a subsequent spontaneous reaction allows throughput.

6

5

4

3

2

1CH2OPO32

C

C

C

C

CH2OPO32

O

HO H

H OH

H OH

3

2

1

CH2OPO32

C

CH2OH

O

C

C

CH2OPO32

H O

H OH+

1

2

3

fructose-1,6- bisphosphate

Aldolase

dihydroxyacetone glyceraldehyde-3- phosphate phosphate

Triosephosphate Isomerase

08-Mar-15 31

Page 32: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

The ketose/aldose conversion involves acid/base catalysis, and is thought to proceed via an enediol intermediate, as with Phosphoglucose Isomerase.

Active site Glu and His residues are thought to extract and donate protons during catalysis.

C

C

CH2OPO32

O

C

C

CH2OPO32

H O

H OH

C

C

CH2OPO32

H OH

OH

H

H OH H+

H+

H+

H+

dihydroxyacetone enediol glyceraldehyde- phosphate intermediate 3-phosphate

Triosephosphate Isomerase

08-Mar-15 32

Page 33: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

Hexokinase

Phosphofructokinase

glucose Glycolysis

ATP

ADP

glucose-6-phosphate

Phosphoglucose Isomerase

fructose-6-phosphate

ATP

ADP

fructose-1,6-bisphosphate

Aldolase

glyceraldehyde-3-phosphate + dihydroxyacetone-phosphate

Triosephosphate Isomerase Glycolysis continued

08-Mar-15 33

Page 34: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

Glyceraldehyde-3-phosphate Dehydrogenase

Phosphoglycerate Kinase

Enolase

Pyruvate Kinase

glyceraldehyde-3-phosphate

NAD+ + Pi

NADH + H+

1,3-bisphosphoglycerate

ADP

ATP

3-phosphoglycerate

Phosphoglycerate Mutase

2-phosphoglycerate

H2O

phosphoenolpyruvate

ADP

ATP

pyruvate

Glycolysis continued.

Recall that there are 2 GAP per glucose.

08-Mar-15 34

Page 35: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

Balance sheet for ~P bonds of ATP:

How many ATP ~P bonds expended? ________

How many ~P bonds of ATP produced? (Remember there are two 3C fragments from glucose.) ________

Net production of ~P bonds of ATP per glucose: ________

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They must reoxidize NADH produced in Glycolysis through some other reaction, because NAD+ is needed for the Glyceraldehyde-3-phosphate Dehydrogenase reaction.

Usually NADH is reoxidized as pyruvate is converted to a more reduced compound.

The complete pathway, including Glycolysis and the reoxidation of NADH, is called fermentation.

C

C

CH2OPO32

H O

H OH

C

C

CH2OPO32

O OPO32

H OH+ Pi

+ H+

NAD+ NADH

1

2

3

2

3

1

glyceraldehyde- 1,3-bisphospho- 3-phosphate glycerate

Glyceraldehyde-3-phosphate Dehydrogenase

Fermentation:

Anaerobic organisms lack a respiratory chain.

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C

C

CH3

O

O

O

C

HC

CH3

O

OH

O

NADH + H+ NAD

+

Lactate Dehydrogenase

pyruvate lactate

E.g., Lactate Dehydrogenase catalyzes reduction of the keto in pyruvate to a hydroxyl, yielding lactate, as NADH is oxidized to NAD+.

Lactate, in addition to being an end-product of fermentation, serves as a mobile form of nutrient energy, & possibly as a signal molecule in mammalian organisms.

Cell membranes contain carrier proteins that facilitate transport of lactate.08-Mar-15 37

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C

C

CH3

O

O

O

C

HC

CH3

O

OH

O

NADH + H+ NAD

+

Lactate Dehydrogenase

pyruvate lactate

Skeletal muscles ferment glucose to lactate during exercise, when the exertion is brief and intense.

Lactate released to the blood may be taken up by other tissues, or by skeletal muscle after exercise, and converted via Lactate Dehydrogenase back to pyruvate, which may be oxidized in Krebs Cycle or (in liver) converted to back to glucose via gluconeogenesis08-Mar-15 38

Page 39: GLYCOLYSIS• b) Hexose monophosphate pathway: for production of ribose, deoxyribose • and NADPH + H+ • c) Uronic acid pathway, for production of glucuronic acid, which is used

• Lactate serves as a fuel source for cardiac muscle as well as brain neurons.

• Astrocytes, which surround and protect neurons in the brain, ferment glucose to lactate and release it.

• Lactate taken up by adjacent neurons is converted to pyruvate that is oxidized via Krebs Cycle.

Some anaerobic organisms metabolize pyruvate to ethanol, which is excreted as a waste product.

NADH is converted to NAD+ in the reaction catalyzed by Alcohol Dehydrogenase.

Glycolysis, omitting H+: glucose + 2 NAD+ + 2 ADP + 2 Pi

2 pyruvate + 2 NADH + 2 ATP

Fermentation, from glucose to lactate:glucose + 2 ADP + 2 Pi 2 lactate + 2 ATP

Anaerobic catabolism of glucose yields only 2 “high energy” bonds of ATP.

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• Substrate level phosphorylation:

• This means phosphorylation of ADP to ATP at the reaction itself .in

• glycolysis there are 2 examples:

• - 1.3 Bisphosphoglycerate + ADP 3 Phosphoglycerate + ATP

• - Phospho-enol pyruvate + ADP Enolpyruvate + ATP

• I. Special features of glycolysis in RBCs:• 1. Mature RBCs contain no mitochondria, thus:

• a) They depend only upon glycolysis for energy production (=2 ATP).

• b) Lactate is always the end product.

• 2. Glucose uptake by RBCs is independent on insulin hormone.

• 3. Reduction of met-hemoglobin: Glycolysis produces NADH+H+, which

• used for reduction of met-hemoglobin in red cells.

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• Biological importance (functions) of glycolysis:

• 1. Energy production:

• a) anaerobic glycolysis gives 2 ATP.

• b) aerobic glycolysis gives 8 ATP.

• 2. Oxygenation of tissues:

• Through formation of 2,3 bisphosphoglycerate, which decreases the

• affinity of Hemoglobin to O2.

• 3. Provides important intermediates:

• a) Dihydroxyacetone phosphate: can give glycerol-3phosphate, which is

• used for synthesis of triacylglycerols and phospholipids (lipogenesis).

• b) 3 Phosphoglycerate: which can be used for synthesis of amino acid

• serine.

• c) Pyruvate: which can be used in synthesis of amino acid alanine.

• 4. Aerobic glycolysis provides the mitochondria with pyruvate, which gives

• acetyl CoA Krebs' cycle.

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• Reversibility of glycolysis (Gluconeoqenesis):

• 1. Reversible reaction means that the same enzyme can catalyzes the

• reaction in both directions.

• 2. all reactions of glycolysis -except 3- are reversible.

• 3. The 3 irreversible reactions (those catalyzed by kinase enzymes) can

be

• reversed by using other enzymes.

• Glucose-6-p Glucose

• F1, 6 Bisphosphate Fructose-6-p

• Pyruvate Phosphoenol pyruvate

• 4. During fasting, glycolysis is reversed for synthesis of glucose from

non-

• carbohydrate sources e.g. lactate. This mechanism is called:

• gluconeogenesis.

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Comparison between glucokinase and hexokinase enzymes:

HexokinaseGlucokinaase

All tissue cellsLiver only1. Site

High affinity (low km) i.e. it acts even

in the presence of low blood glucose

concentration.

Low affinity (high km) i.e. it acts

only in the presence of high blood

glucose concentration.

2. Affinity to

glucose

Glucose, galactose and fructoseGlucose only3. Substrate

No effect Induces synthesis of glucokinase.4. Effect of

insulin

Allosterically inhibits hexokinaseNo effect5.Effect of

glucose-6-p

It phosphorylates glucose inside the

body cells. This makes glucose

concentration more in blood than

inside the cells. This leads to

continuous supply of glucose for the

tissues even in the presence of low

blood glucose concentration.

Acts in liver after meals. It removes

glucose coming in portal circulation,

converting it into glucose -6-

phosphate.

6. Function

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Importance of lactate production in anerobic

glycolysis:

1. In absence of oxygen, lactate is the end product of

glycolysis:

Glucose Pyruvate Lactate

2. In absence of oxygen, NADH + H+ is not oxidized by the

respiratory chain.

3. The conversion of pyruvate to lactate is the mechanism for

regeneration of NAD+.

4. This helps continuity of glycolysis, as the generated NAD+

will be used once more for oxidation of another glucose

molecule.

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• As pyruvate enters the mitochondrion, a multienzymecomplex modifies pyruvate to acetyl CoA which enters the Krebs cycle in the matrix.

– A carboxyl group is removed as CO2.

– A pair of electrons is transferred from the remaining two-carbon fragment to NAD+ to form NADH.

– The oxidized fragment, acetate, combines with coenzyme A to form acetyl CoA.

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