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Biochemical Characterization of LNR_A of Human Notch1 and Notch2. Christina Hao. What is Notch?. Transmembrane protein receptors of 300-350kDa Highly conserved Regulates cell growth, differentiation, and cell death in a vast array of tissues through Notch signaling pathway - PowerPoint PPT Presentation
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Biochemical Characterization of LNR_A of Human Notch1 and Notch2
Christina Hao
What is Notch?
Transmembrane protein receptors of 300-350kDa
Highly conserved
Regulates cell growth, differentiation, and cell death in a vast array of tissues through Notch signaling pathway
Deregulation of Notch signaling pathway is associated with diseases, eg. Cancer
Four mammalian Notch homologs identified (Notch 1-4)
Notch Signaling Pathway
Receiving Cell
Signaling Cell
Ligand
A B C ICN
Ligand-binding Region
Negative regulatory region (NRR)
HD Domain
LNR Domain
A B C HD-N HD-C
S2 S3
Nucleus
Notch Activation I. Ligand binding
II. Regulated cleavages
III. Release of intracellular notch/ Regulation of gene transcription
S1
Structural View of NRR
A B C HD-N HD-C ICN
Negative regulatory region (NRR)
S1 S3S2LNRs are important for maintaining the receptor in
its resting conformation prior to ligand binding.
A B C HD-N HD-C
S1 S2 S3
EGF-like Repeats
Gordon, Vardar-Ulu, Histen, Sanchez-Iriarry, Aster, Blacklow (2007) Structural basis for autoinhibition of Notch. Nature: Structural and molecular biology
Biochemical Characterization of LNR_A in Human Notch1 and Notch2 Lin12/Notch repeats are structurally independent,
disulfide-rich, protein modules of 35 residues. Can be biochemically
characterized in vitro
Requires large amount of proteins for characterization Goal: Optimize protein production in E.coli expr
ession system. Vardar, North, Sanchez-Irizarry, Aster, Blacklow (2003) Nuclear Magnetic Resonance Structure of a Prototype Lin12-Notch repeat Modules fro
m Human Notch1. American Chemical Society (42)7061-7067
Research Protocol: Optimizing Recombinant Protein
Expression in Escherichia Coli
CaCl2 competent cells
1 Transformation
Monitor optical density
Inoculate culture with single colony
Grow at 37o C
Collect hourly Samples for
4 hours
Induce with 0.5, 0.1 mM IPTG at 0.5 and0.8 OD
2
34
566x His tag Nickel
affinity chromatography
7
Run Gel
Cell Lines
Protocol Overview:
Competent cells :::::Transformation :::::Inoculation :::::Induction :::::Purification :::::Gel
Cell lines Main Features
BL21 (DE3)
T7 polymerase Lacks two enzymes
BL21 (DE3)-PlysS
T7 polymerase Lacks two enzymes T7 lysozyme
BL21
(DE3)-
RIPL
T7 polymerase Lacks two enzymes Carry extra genes that recognize mammalian arginine, isoleucine and leucine condons
Protocol Overview:
Competent cells :::::Transformation :::::Inoculation :::::Induction :::::Purification :::::Gel
Origin
T7 promoterTarget gene
T7 terminator His-Tag
Lac I
Vector: pET15
Induction: IPTGProtocol
Overview:
Competent cells
:::::Transformation :::::Inoculation :::::Induction :::::Purification :::::Gel
Repressorlac 1
T7 RNA polymerase
Lac Operon
E coli
mRNA
T7 Promotor Operator
Target genes
IPTG
IPTG
Protocol Overview:
Competent cells
:::::Transformation :::::Inoculation :::::Induction :::::Purification :::::
Gel
Results Expected outcome:
Molecular
Weight Uninduced 1 hr. 2 hr.3 hr. 4 hr.
6kda
6kDa
Where are the proteins?
Conclusion:
No significant production of hNotch1 LNR_A was present in E. coli under these experimental parameters:
DE3, plysS, RIPL host strains with pET15 vector grown at 37o C and induced with 0.1, 0.5mM IPTG at 0.5, 0.8OD.
DiscussionPossible reasons for low expression of target protein: Rapid proteolytic degradation Decreased mRNA stability Toxicity upon induction Unsuitable expression system
What is next: Continue experimenting with different conditions (eg. te
mperature, media contents, etc.) difficult for drastic improvement
Inclusion bodies has proven to work previously
mRNA
T7 RNA polymerase
E. coli
Future Projects
Determine the Ca2+ affinity of LNRs for other all notch via Isothermal Titration Calorimetry
Test different metals
Vardar, North, Sanchez-Irizarry, Aster, Blacklow (2003) Nuclear Magnetic Resonance Structure of a Prototype Lin12-Notch repeat Modules from Human Notch1. American Chemical Society (42)7061-7067
Impact of Proposed Projects
Information acquired through these studies will:
Facilitate the development of structural and functional hypotheses about the regulation of Notch signaling
Provide insight into how failure in tight regulation can lead to disease states
References
Gordon, Vardar-Ulu, Histen, Sanchez-Iriarry, Aster, Blacklow (2007) Structural basis for autoinhibition of Notch. Nature: Structural and molecular biology
Sjolund, Manetopoulos, Stockhausen, Axelson (2005). Review: The Notch pathway in cancer: Differentiation gone awry. European Journal of Cancer 41: 2620-2629
Sorensen, Mortensen (2004) Advanced genetic strategies for recombinant protein expression in Escherichia coli. Journal of Biotechnology (115) 2:113-128
Vardar, North, Sanchez-Irizarry, Aster, Blacklow (2003) Nuclear Magnetic Resonance Structure of a Prototype Lin12-Notch repeat Modules from Human Notch1. American Chemical Society (42)7061-7067
http://www.emdbiosciences.com/product/69661 http://wolfson.huji.ac.il/expression/Bacterial_Strains.htm#strains-exp
Acknowledgements
Didem Vardar-Ulu Sharline Madera
Mentoring in the Science Program Fund
Rhulman
Questions?
Thank You