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Bioinformatics Core. Lang Li Center for Computational Biology and Bioinformatics Division of Biostatistics Department of Medicine. Bioinformatics Core Structure. Bioinformatics core (directed by Lang Li). CCBB faculty. Analyst 1. Faculty 1. Lab 1. Analyst 2. Faculty 2. Lab 2. …. …. - PowerPoint PPT Presentation
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Bioinformatics Core
Lang LiCenter for Computational Biology and BioinformaticsDivision of Biostatistics Department of Medicine
Bioinformatics Core Structure
Analyst 1
Analyst 2
Analyst N
Bioinformatics core (directed by Lang
Li)
Faculty 1
Faculty 2
Faculty N
CCBB faculty
Lab 1
Lab 2
Lab N
… … …Bioinformatics Leader
Microarray core(s)
Proteomics core
Sequencing core
…
Research area covered by CCBB and Bioinformatics core • Genetics– Population genetics– Pharmacogenetics
• Functional Genomics– Epigenetic regulation– Transcriptional regulation– Gene expression– Post-transcriptional regulation
• Proteomics/Metabolomics– Mass spectrometry data analysis– Protein structure prediction
• Drug screening• Pharmacometrics– Pharmacokinetics– Pharmacodynamics– Disease models
DNA
Protein
transcription
translation
mRNA
Drug
Lang LiTatiana Foroud Jeesun JungShen Li
Yunlong LiuLang Li Changyu Shen
Changyu Shen Jake ChenYaoqi Zhou Keith Dunker Vladimir UverskySamy Meroueh
Lang Li Robert Bies
http://compbio.iupui.edu/
http://compbio.iupui.edu/
Sequence Analysis pipeline
Primary analysis Secondary analysis Tertiary analysis
• Image acquisition and bead processing
• Quality metrics• Color calls
• Sequence alignment• Sequence stats• Consensus calling• Create QC files• Tag counting
Application-specific analysis•Re-sequencing•De novo sequencing•ChIP-seq•Whole transcriptome•DNA methylation•…
Sequencing Core Bioinformatics Core
High throughput data management
• caArray system is established at Bioinformatics core
• myTrack system for next generation sequencing data
Manage, compare, share and publish high throughput data produced using next generation sequencing technology
Our team!
• Genetics/Genomics– Lang Li, Tatiana Foroud, Jeesun Jung, Shen Li
• Functional Genomics– Yunlong Liu, Lang Li, Changyu Shen
• Proteomics/Metabolomics– Changyu Shen and Jake Chen (high throughput technology)– Yaoqi Zhou, Keith Dunker, Vladimir Uversky (protein
structure/disorder)
• Drug screening– Samy Meroueh
• Pharmacometrics– Lang Li, Robert Bies
Contact Info
• Lang Li, [email protected]• http://compbio.iupui.edu/core