17
gy on the Cheap- Hands on Labs for Under $50 Jessie Dorman

Biotechnology on the Cheap- Hands on Labs for Under $50 Jessie Dorman

Embed Size (px)

Citation preview

Page 1: Biotechnology on the Cheap- Hands on Labs for Under $50 Jessie Dorman

Biotechnology on the

Cheap- Hands on Labs for

Under $50Jessie Dorman

Page 2: Biotechnology on the Cheap- Hands on Labs for Under $50 Jessie Dorman

Dilution Labs

Dye Lab- (Serial Dilution) Use Methylene Blue, tap water, microtiter plate (I use 12

well plates) Can be done using cups or tubes

Bleach Lab (C1V1=C2V2) Bleach’s caustic effects on Jeans Jeans, tap water, bleach, graduated cylinder, cups,

forceps, timer NEW LAB- What concentration do you need to be

effective? (Serial Dilution) Use Distilled water, bleach, tubes (with caps), petri-plates,

culture broth, E. Coli, Loop-needle OR dropper NOT posted on website due to copy right (U. of Missouri):

Google Microbes in Action.

Page 3: Biotechnology on the Cheap- Hands on Labs for Under $50 Jessie Dorman

Bacterial Growth

Hand wash Lab Soap, hand-sanitizer, third option (wipes?), petri-

dishes Disinfectants Lab

Disinfectants (bleach, H2O2, Alcohol, Lysol, etc.), water, petri-dishes, spoiled milk (could use E. coli), cups (or well plate), forceps

You Don’t Know Where That’s Been Supplies- Vary depending on student design

(see possible list on supplies handout or on activity handout)

Page 4: Biotechnology on the Cheap- Hands on Labs for Under $50 Jessie Dorman

Optional Bacteria Lab

Similar to You Don’t Know but instead of swabbing surfaces students could use soil, water, and air samples.

Simply add soil and water samples to start a broth culture (usually ~5-10 mL sample to ~10 mL broth), then incubate for 24-48 hours (until culture gets cloudy). Works best if the culture is “agitated” a few times during the first few hours.

Then simply swab the culture onto petri-dishes Air samples, expose broth to the air sample for

an amount of time and then do the same as you did for the soil and water samples.

Page 5: Biotechnology on the Cheap- Hands on Labs for Under $50 Jessie Dorman

ELISA

ELISA is an “Enzyme Linked ImmounoSorbant Assay

Purpose is to determine if an antibody protein is present in the serum and if so how much.

The protein being present indicates and immune response occured

The protocol obtained is from Carolina and only looks for positive (protein present), negative(protein not present), and slight positive (low amounts of protein present)

Page 6: Biotechnology on the Cheap- Hands on Labs for Under $50 Jessie Dorman

ELISA Cont.

The Carolina lab uses patented “enzymes” to do the reaction. It is a bit more specific then my Cheap Version of it.

Need Distilled Water, base, phenolphthalein, 1.5 mL tubes

My way, while less specific as mentioned above, is considerably cheaper. (Even with buying all of the big items such as the 1.5 mL tubes, and pipettes it only costs ~$98 and those items are useful in many different experiments.)

The Kit from Carolina is ~$105 with kit refills (“enzymes” costing ~$46 which need to be ordered within a few weeks of doing the experiment, frozen on receipt and replaced each year).

Page 7: Biotechnology on the Cheap- Hands on Labs for Under $50 Jessie Dorman

Carolina Protocol

Page 8: Biotechnology on the Cheap- Hands on Labs for Under $50 Jessie Dorman

ELISA Notes of Interest

If using my version be sure to “neutralize” all items (pipettes, tubes, plates) used or when you go to do the experiment again you may get “false positives” or results that show before adding the Chromogen (Phenolphthalein)

I just use a bin of water with a quarter to half cup of lemon juice

Page 9: Biotechnology on the Cheap- Hands on Labs for Under $50 Jessie Dorman

Another way to do the experiment is to do the dilution series down the plate. This is how it is done “in the real world”. If doing that you will need to use the 96 well plates and essentially do 1:2 dilutions down the plate (ex have 10 uL of diluent and add an mix 10 uL of the previous well’s sample.

See file named

“ELISA Procedure for Measuring Serum Antibody Titer”

Page 10: Biotechnology on the Cheap- Hands on Labs for Under $50 Jessie Dorman

Antibody Titer Method1 2 3 4 5 6 7 8 9 10 11 12

A S1 100

S1 100

S1 100

S2 100

S2 100

S2 100

S3100

S3100

S3100

S4100

S4100

S4100

B S1 50

S1 50

S1 50

S2 50

S2 50

S2 50

S3 50

S3 50

S3 50

S4 50

S4 50

S4 50

C S125

S125

S125

S225

S225

S225

S325

S325

S325

S425

S425

S425

D S1 12.5

S1 12.5

S1 12.5

S2 12.5

S2 12.5

S2 12.5

S3 12.5

S3 12.5

S3 12.5

S4 12.5

S4 12.5

S4 12.5

E S1 6.25

S1 6.25

S1 6.25

S2 6.25

S2 6.25

S2 6.25

S3 6.25

S3 6.25

S3 6.25

S4 6.25

S4 6.25

S4 6.25

F S1 3.13

S1 3.13

S1 3.13

S2 3.13

S2 3.13

S2 3.13

S3 3.13

S3 3.13

S3 3.13

S4 3.13

S4 3.13

S4 3.13

G S1 1.56

S1 1.56

S1 1.56

S2 1.56

S2 1.56

S2 1.56

S3 1.56

S3 1.56

S3 1.56

S4 1.56

S4 1.56

S4 1.56

H S1 0.781

S1 0.781

S1 0.781

S2 0.781

S2 0.781

S2 0.781

S3 0.781

S3 0.781

S3 0.781

S4 0.781

S4 0.781

S4 0.781

I NC NC NC PC PC PC

Page 11: Biotechnology on the Cheap- Hands on Labs for Under $50 Jessie Dorman

DNA Extraction with a Twist

Most people have heard of or done the DNA extraction either with a kit (like Carolina’s DNA necklace) or from a kitchen chemistry protocol (using shampoo, salt, and a coffee filter).

When doing the strawberry (or other fruit) extraction I like to use frozen due to when the ice crystals form they act like mini daggers and rupture some of the cells (that is why frozen fruit becomes “mushy” when thawed).

Page 12: Biotechnology on the Cheap- Hands on Labs for Under $50 Jessie Dorman

DNA Extraction Notes of Interest

Mine is a twist on the kitchen chemistry version. Instead of using shampoo and water for the

extraction buffer use Mrs. Stewart’s Bluing (can be found in the laundry section as it is used to “Make whites whiter”.

The bluing solution will “stain” the DNA blue making it much easier to see.

When using strawberry or some other fruit DNA is plentiful and easy to see as white fluff in normal protocols but when doing the human cheek extraction the DNA is hard to see due to low quantities so the Mrs. Stewart’s is very helpful.

Page 13: Biotechnology on the Cheap- Hands on Labs for Under $50 Jessie Dorman
Page 14: Biotechnology on the Cheap- Hands on Labs for Under $50 Jessie Dorman

$366 ~ $7 bin + $20 Blanket = $27

=

=

=

$$$ Money Savers $$$

Page 15: Biotechnology on the Cheap- Hands on Labs for Under $50 Jessie Dorman

Money Savers

Incubator- Plastic bin wrapped in an electric blanket with a thermometer (cheap fish tank one) to determine what setting is needed for desired temperature.

If moist heat is needed place a shallow dish of water in bin with plates (maybe put a wire rack on top of a shallow pan or dish to put the plates on).

Make your own media (very easy, made with items found at local grocery).

Don’t have Bunsen burners? Use chaffing dishes. No water bath- Use a pot on a hot plate.

Page 16: Biotechnology on the Cheap- Hands on Labs for Under $50 Jessie Dorman

Ask Around

Most science equipment and materials have an expiration date or a calibration date and when these items pass that date in industry (especially ones that require FDA approval) must be discarded.

Contact local science companies, university science departments, and hospital research facilities and state your need for any expired supplies that may be past their expiration date.

Page 17: Biotechnology on the Cheap- Hands on Labs for Under $50 Jessie Dorman

Want My Lessons or Materials List?

Go to:

lebraves.net/NSTA

Or:

lebraves.net

Then click on the NSTA tab at the top.

Questions or Comments:

[email protected]

Feedback Very Welcomed! =-)