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The Structure of DNA Important Contributors to the Genetic Code DNA Replication Chapter 12: DNA

Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

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Page 1: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

The Structure of DNA

Important Contributors to the Genetic Code

DNA Replication

Chapter 12: DNA

Page 2: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Activating Prior Knowledge

1. List the eight characteristics of living things.

2. List the five elements found in nucleic acids.

3. Name the monomer of nucleic acids.

4. Identify the three parts of the monomer mentioned in question

three.

5. Name two examples of nucleic acids.

6. What are the bonds between the nucleotides?

7. Identify two differences between prokaryotic and eukaryotic cells.

8. Which organelle serves as the site of protein synthesis?

9. Name the monomers of proteins.

10. Which organelle modifies, sorts, and packages proteins?

11. Which organelle serves as an intracellular highway?

Page 3: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Do you remember any of the eight

characteristics of living things?

1. Living things are based on a universal genetic code (DNA)

2. Living things grow and develop

3. Living things respond to their environment (stimulus)

4. Living things reproduce

5. Living things maintain a stable internal environment

(homeostasis)

6. Living things obtain and use material and energy

(metabolism)

7. Living things are made up of CELLS

8. Taken as a group, living things evolve over time

Page 4: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Nucleic Acids Large, complex organic compounds that store

information in cells, using a system of four compounds to store hereditary information, arranged in a certain order as a code for genetic instructions of the cell.

Elements: Carbon, Hydrogen, Oxygen, Nitrogen, Phosphorus

Monomer: Nucleotide

1. Phosphate group

(Phosphoric Acid)

2. 5-carbon (pentose) sugar

(Deoxyribose or Ribose)

3. Nitrogenous Base

Page 5: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Nucleic Acids Nucleotides combine, in DNA to form a double helix, and in

RNA a single helix

The sides of the ladder are made

up of the phosphate group and

the sugar and the rungs of the

ladder are nitrogen bases

Examples of Nucleic Acids:

1. Deoxyribonucleic Acid (DNA)

2. Ribonucleic Acid (RNA)

Nucleic Acids and Dehydration Synthesis

Page 6: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Type of Bond Bond Between……

phosphodiester phosphate group and sugar

N-glycosidic sugar (glycosidic) and nitrogen base

hydrogen nitrogen bases

Nucleic Acids:

Page 7: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Two categories of cells

Prokaryotic Eukaryotic

-No Nucleus

-Nucleus

-Smaller Ribosomes

less complex

-Less complex

-DNA is X shaped

- Ribosomes larger

and complex

-Membrane bound

organelles

-Complex-Cell wall

(plants and

bacteria)

-DNA is circular

-Cell membrane

-DNA

-Cytoplasm

-Ribosomes

-Multicellular

-Living things

-Unicellular

0.1-10µm10-100µm

Page 8: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Proteins Elements: Carbon, Hydrogen, Oxygen, Nitrogen

Monomer: AMINO ACID (20 different kinds)

Each amino acid has a central carbon atom bonded to 4

other atoms or functional groups

Page 9: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Organelles Organelle that serves as the site of protein synthesis?

Ribosomes (Rough ER)

Organelle that modifies, sorts and packages proteins?

Golgi Apparatus

Organelle that serves as an intracellular highway?

Endoplasmic Reticulum (ER)

Page 10: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

DNA StructureSection 12.2: The Structure of DNA

Learn Genetics Tutorial

Discovery of DNA (4 min) video clip

NOVA Journey into a Human (Interactive)

Page 11: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Deoxyribonucleic Acid is a polymer

formed from units called nucleotides.

Each nucleotide monomer is made

up of three parts:

a) 5-carbon sugar

(deoxyribose)

b) phosphate group

c) nitrogen base

b. a.

c.

Page 12: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

There are 4 nitrogenous bases found in DNA:

Purines (2 rings)

a) Guanine (G)

b) Adenine (A)

Pyrimidines (one ring)

a) Thymine (T)

b) Cytosine (C)

Page 13: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Nucleotides

Page 14: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Rosalind Franklin In the 1950s, British scientist Rosalind

Franklin used a technique called X-ray

diffraction to get information about the

structure of the DNA molecule.

X-ray diffraction revealed an X-shaped

pattern showing that the strands in DNA

are twisted around each other like the coils

of a spring.

The angle of the X-shaped pattern

suggested that there are two strands in

the structure.

Other clues suggest that the nitrogenous

bases are near the center of the DNA

molecule.

Page 15: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Erwin Chargaff Erwin Chargaff discovered that the percentages of

adenine [A] and thymine [T] bases are almost equal

in any sample of DNA.

The same is true for the other two nucleotides,

guanine [G] and cytosine [C].

The observation that [A] = [T] and [G] = [C]

became known as one of “Chargaff ’s rules.”

Page 16: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Watson & Crick At the same time, James Watson, an American

biologist, and Francis Crick, a British physicist,

were also trying to understand the structure of

DNA.

Early in 1953, Watson was shown a copy of

Franklin’s X-ray pattern. The clues in Franklin’s

X-ray pattern enabled Watson and Crick to

build a model that explained the specific

structure and properties of DNA.

They built the first correct 3-D model of

the DNA molecule.

Page 17: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Watson and Crick In the double-helix model of DNA,

the two strands twist around each other like spiral staircases.

The double helix accounted for Franklin’s X-ray pattern and explains Chargaff’s rule of base pairing and how the two strands of DNA are held together.

What they knew. . . DNA is made of two strands.

Each strand has a sugar-phosphate backbone.

The bases are in the middle connected through hydrogen bonds

Page 18: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Deoxyribonucleic Acid:

The DNA polymer looks

like a twisted ladder, with

the 5-carbon sugar and

phosphate group making

up the sides of the ladder

and the nitrogen bases

are the steps/rungs.

Page 19: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Nitrogen bases pair according to certain rules

Purines pair with pyrimidines

Guanine pairs with Cytosine

Adenine pairs with Thymine

The nitrogen bases are held

together by HYDROGEN bonds.

Page 21: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed
Page 22: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Structure of DNA

The DNA strands are

ANTIPARALLEL

They run in opposite directions.

One strand is arranged 5’ to

3’ while the other strand is

3’ to 5’

5’ and 3’ refer to the carbon atoms in the deoxyribose sugar.

Page 23: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

DNA is a long molecule made up of units called

nucleotides. Each nucleotide is made up of three basic

parts: __________, __________, &__________.

There are 4 kinds of ______________ in DNA.

They _______ according to two rules:

1) ________ always pair with ___________ and

2) Guanine pairs with _________ and _________ pairs

with adenine.

Deoxyribose

(5 C sugar)Phosphate group Nitrogenous base

Nitrogenous bases

pair

Purines Pyrimidines

Cytosine Thymine

Check your understanding…

Page 24: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Comprehension Question

If Cytosine makes up 22% of the nucleotides in a

sample of DNA from an organism, then adenine

would make up what percent of the bases?

A. 22

B. 44

C. 28

D. 56

E. Not enough information is provided to

determine the answer to this question

Answer is C:

• C pairs with G for a total of 44%

• 100-44 = 56% (for A and T)

• Divide by 2 for the % of A

Page 25: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Secret of Photo 51 – NOVA (55 min)

NOVA - Secret of Photo 51

Page 26: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

DNA ReplicationSection 12.3

Learn Genetics Tutorial

PBS DNA Workshop

Page 27: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

DNA Replication

Because each of the two strands of the DNA

double helix has all of the information to

reconstruct the other half, the strands are said to

be complementary.

Each strand of the double helix serves as a

template to make the other strand.

Semiconservative replication = the two

resulting DNA copies each have one strand of

parental DNA, and one newly constructed strand.

Page 28: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

DNA Replication Practice

A T C C G A T G A T T

T T TCA GG A AAC

Page 29: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

RNA Transcription Practice

- Uracil (U) replaces Thymine (T)

A T C C G A T G A T T

U U UCA GG A AAC

Page 30: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Illustration of DNA Replication

DNA Replication (1:04 min)

Page 32: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

DNA Replication

DNA replication is carried out by a series of enzymes.

a) Helicase separates (unzip) the two strands of the

double helix.

b) Primase creates RNA primers

c) DNA polymerase adds new nucleotides.

Page 33: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

DNA Replication

Biointeractive - Short clip of DNA

Replication (1 min)

Page 34: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

How does it replicate?

1. Helicase - is an enzyme that separates the two DNA strands by breaking the hydrogen bonds in the middle.

DNA Replication

DNA Replication (3:56)

Page 35: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

How does it replicate?

2. Primase - is an enzyme that creates RNA primers where DNA replication begins.

DNA Replication

DNA Replication (3:56)

Page 36: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

3. DNA Polymerase: adds nucleotides to the single stranded DNA according to base pairing rules. Cannot begin from scratch – primase synthesizes RNA primers

DNA polymerase only moves in one direction, from 5’ to 3’ for the new strand formation

DNA Replication

Page 37: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Leading Strand: the 5’ to 3’ strand, DNA polymerase can add

nucleotides to make one continuous strand.

Lagging Strand: the 3’ to 5’ strand, DNA polymerase moves in

the opposite direction.

DNA polymerase forms short segments of DNA called

Okazaki fragments.

DNA Replication

Page 38: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

4. Ligase: uses covalent bonds to connect Okazaki fragments together in the lagging strand.

DNA Replication

DNA Replication 3D (3:27)

Page 39: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

1. The double helix unzips with helicase down the middle as base pairs separate. RNA primers are added where DNA replication begins.

2. DNA polymerase adds the correct complimentary nucleotide to each exposed strand. Ligase connects all fragments.

3. A complimentary strand is created for each original strand in the double helix.

DNA Replication Summary

Page 40: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

DNA Replication Process

3D Animation (5:45)

Page 41: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Important Contributors to the

Genetic Code

Section 12.1: Identifying the Substance of Genes

PBS Episode 1 of 5 - DNA The Secret of Life

(54 min)

The Secret of Life -The Discovery of DNA

(9 min)

Page 42: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

The Genetic Code: To truly understand genetics, scientists realized they had to discover

the chemical nature of the gene.

If the molecule that carries genetic information could be identified,

it might be possible to understand how genes control the inherited

characteristics of living things.

Page 43: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Griffith’s Experiments: The discovery of the chemical nature of the gene began in 1928

with British scientist Frederick Griffith, who was trying to figure

out how certain types of bacteria produce pneumonia.

Griffith isolated two different strains of the same bacterial species.

Both strains grew very well in culture plates in Griffith’s lab, but

only one of the strains caused pneumonia.

Page 44: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Griffith’s Experiments: The disease-causing bacteria (S strain) grew into smooth colonies

on culture plates, whereas the harmless bacteria

(R strain) produced colonies with rough edges.

Page 45: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Griffith’s Experiments: When Griffith injected mice with disease-causing bacteria, the

mice developed pneumonia and died.

When he injected mice with harmless bacteria, the mice stayed

healthy.

Perhaps the S-strain bacteria produced a toxin that made the mice sick? To find out, Griffith ran a series of experiments.

Page 46: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Griffith’s Experiments: First, Griffith took a culture of the S strain, heated the cells to kill

them, and then injected the heat-killed bacteria into laboratory

mice.

The mice survived, suggesting that the cause of pneumonia was

not a toxin from these disease-causing bacteria.

Page 47: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Griffith’s Experiments: In Griffith’s next experiment, he mixed the heat-killed, S-strain

bacteria with live, harmless bacteria from the R strain and injected

the mixture into laboratory mice.

The injected mice developed pneumonia, and many died.

Page 48: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Griffith’s Experiments: The lungs of these mice were filled with the disease-causing

bacteria. How could that happen if the S strain cells were dead?

Griffith reasoned that some chemical factor that could change

harmless bacteria into disease-causing bacteria was transferred

from the heat-killed cells of the S strain into the live cells of the R

strain.

Page 49: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Griffith’s Experiments: He called this process transformation, because one type of

bacteria had been changed permanently into another.

Because the ability to cause disease was inherited by the offspring

of the transformed bacteria, Griffith concluded that the

transforming factor had to be a gene.

Page 50: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Avery, McCarty, and MacLeod: A group of scientists at the Rockefeller Institute in New York, led

by the Canadian biologist Oswald Avery, wanted to determine

which molecule in the heat-killed bacteria was most important for

transformation.

Avery and his team extracted a mixture of various molecules from

the heat-killed bacteria and treated this mixture with enzymes that

destroyed proteins, lipids, carbohydrates, and some other

molecules, including the nucleic acid RNA.

Transformation still occurred.

Page 51: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Avery, McCarty, and MacLeod: Avery’s team repeated the experiment using enzymes that would

break down DNA.

When they destroyed the DNA in the mixture, transformation did

not occur.

Therefore, DNA was the transforming factor.

Page 52: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Hershey and Chase studied viruses—nonliving particles that can

infect living cells.

The kind of virus that infects

bacteria is known as a

bacteriophage, which means

“bacteria eater.”

Hershey and Chase Experiment (1:48)

Hershey and Chase

Page 53: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

When a bacteriophage enters a bacterium, it attaches to the

surface of the bacterial cell and injects its genetic information into

it.

The viral genes act to produce many new bacteriophages, which

gradually destroy the bacterium.

When the cell splits open, hundreds of new viruses burst out.

Hershey and Chase

Page 54: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Hershey and Chase: American scientists Alfred Hershey and Martha Chase studied a

bacteriophage that was composed of a DNA core and a protein

coat.

They wanted to determine which part of the virus – the protein

coat or the DNA core – entered the bacterial cell.

Page 55: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Hershey and Chase grew viruses in cultures containing

radioactive isotopes of phosphorus-32 (P-32) sulfur-35 (S-35)

Hershey and Chase

Page 56: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Since proteins contain almost no phosphorus and DNA contains

no sulfur, these radioactive substances could be used as markers,

enabling the scientists to tell which molecules actually entered the

bacteria and carried the genetic information of the virus.

Hershey and Chase

Page 57: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

If they found radioactivity from S-35 in the bacteria, it would

mean that the virus’s protein coat had been injected into the

bacteria.

If they found P-32 then the DNA core had been injected.

Hershey and Chase

Page 58: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Hershey and Chase

The two scientists mixed the marked viruses with bacterial cells,

waited a few minutes for the viruses to inject their genetic

material, and then tested the bacteria for radioactivity.

Page 59: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Hershey and Chase Nearly all the radioactivity in the bacteria was from phosphorus

P-32 , the marker found in DNA.

Hershey and Chase concluded that the genetic material of the

bacteriophage was DNA, not protein.

Hershey and Chase’s experiment with bacteriophages confirmed Avery’s

results, convincing many scientists that DNA was the genetic material

found in genes—not just in viruses and bacteria, but in all living cells.

Discovery Education Greatest Discoveries - start at 16:55

Page 60: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Rosalind Franklin: In the 1950s, British scientist Rosalind Franklin used a technique

called X-ray diffraction to get information about the structure of

the DNA molecule.

X-ray diffraction revealed an X-shaped pattern showing that the

strands in DNA are twisted around each other like the coils of a

spring.

The angle of the X-shaped pattern suggested that there are two

strands in the structure.

Other clues suggest that the nitrogenous bases are near the center

of the DNA molecule.

Page 61: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Watson and Crick: At the same time, James Watson, an American biologist, and

Francis Crick, a British physicist, were also trying to understand

the structure of DNA.

They built three-dimensional models of the molecule.

Early in 1953, Watson was shown a copy of Franklin’s X-ray

pattern. The clues in Franklin’s X-ray pattern enabled Watson and

Crick to build a model that explained the specific structure and

properties of DNA.

Page 62: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Watson and Crick: In the double-helix model of DNA, the two strands twist around

each other like spiral staircases.

The double helix accounted for Franklin’s X-ray pattern and

explains Chargaff’s rule of base pairing and how the two strands of

DNA are held together.

Page 63: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Erwin Chargaff: Erwin Chargaff discovered that the percentages of adenine [A] and

thymine [T] bases are almost equal in any sample of DNA.

The same thing is true for the other two nucleotides, guanine [G]

and cytosine [C].

The observation that [A] = [T] and [G] = [C] became known as

one of “Chargaff’s rules.”

Page 64: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Transcription and Translation

Chapter 13: RNA and Protein Synthesis

Protein Synthesis in the Cellular Factory 3:55

The RNA Origin of Life 3:09

The RNA Enigma 3:33

Page 65: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

RNA: Ribonucleic Acid

Section 13.1: RNA

Greatest Discoveries - mRNA (start at 24:00-29:30)

Page 66: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Genetic

Code

(genes)

Intermediates

Molecules that

express our

genes

HOW DNA IS USED TO MANUFACTURE PROTEINS

Page 67: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

RNA = Ribonucleic Acid

Consists of a long chain of

macromolecules made up of

nucleotides.

a) 5-carbon sugar (ribose)

b) phosphate group

c) nitrogen base

DNA and RNA (6:57)

Page 68: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

Nitrogenous Bases

Page 69: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

3 differences between DNA and RNA:

1. RNA is single stranded, DNA is

double stranded

2. RNA contains uracil in place of thymine

3. 5-carbon sugar is ribose in RNA,

deoxyribose in DNA

Amoeba Sisters: DNA vs. RNA (4:43)

Page 70: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

3 main types of RNA:

1. Messenger (mRNA)

-instructions for making proteins

2. Ribosomal (rRNA)

-found in ribosomes (where proteins are made)

3. Transfer (tRNA)

-transfers amino acids to the ribosome

mRNArRNA tRNA

Page 71: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

RNA Synthesis: Transcription The process by which a molecule of DNA is copied into a

complementary strand of RNA (mRNA).

Page 72: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

RNA Synthesis: Transcription

All 3 types of RNA are synthesized from DNA in the nucleus

and then used to synthesize proteins in the ribosome.

Protein synthesis is a two step process:

1) Transcription: DNA mRNA (nucleus)

2) Translation: mRNA amino acids proteins (ribosome)

DNA Transcription and Protein Assembly (3:01)

Page 73: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

RNA Synthesis: Transcription mRNA must bring the genetic information from DNA in the

nucleus to the ribosome in the cytoplasm.

An enzyme, RNA polymerase , attaches to the DNA molecule

and separates the double helix.

RNA polymerase binds only to promoters - regions of DNA

that have specific base sequences.

The enzyme moves along the DNA

molecule and synthesizes a

complementary mRNA strand.

Page 74: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

RNA Synthesis: Transcription Transcribe the given DNA sequence into a

complementary mRNA:

A T G C A A G T C A T T C C A G C T

U A C G U U C A G U A A G G U C G A

Page 75: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

RNA Synthesis: Transcription

Page 77: Chapter 12: DNA RNA and...DNA Replication Section 12.3 ... RNA primers are added where DNA replication begins. 2. DNA polymerase adds the correct complimentary nucleotide to each exposed

RNA Editing: The process of transcription takes place in the nucleus.

The mRNA must be processed before leaving the nucleus.

1) Introns and exons are transcribed from DNA

2) Introns are cut out of the mRNA and exons are

spliced back together

3) A cap and a tail are added to the mRNA

NOVA The RNA Enigma (3:33)

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RNA Editing: Introns: Intervening sequences –

pieces of the mRNA cut out and

discarded

Stays IN the nucleus

Exons: Expressed sequences –

the remaining pieces are spliced

back together to form the final

mRNA that leaves the nucleus

EXiting the nucleus

EXpressed

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Some introns are involved in regulating gene activity.

Splicing is necessary for export of mRNA from nucleus

Alternative RNA splicing allows some genes to produce different polypeptides since some can encode more than one kind of polypeptide, depending on which segments are treated as exons during RNA splicing

Introns may facilitate recombination of exons between different alleles or even between different genes.

Exons shuffling can result in novel proteins or the evolution of new proteins.

May allow for more crossing over between exons of alleles or for mixing and matching of exons between nonallelic genes

Greatest Discoveries -

mRNA (start at 32:20)

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Protein SynthesisSection 13.2: Ribosomes and Protein Synthesis

NOVA Protein Synthesis in the

Cellular Factory (3:55)

Har Gobind Khorana

deciphered DNA and

wrote the dictionary

for our genetic

language

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Protein Synthesis:

The information that DNA transfers to mRNA is in the form

of a code, which is determined by the way in which the four

nitrogenous bases are arranged in DNA.

DNA directs the formation of proteins.

The monomers of proteins are amino acids.

There are 20 different amino acids.

A peptide bond holds two amino acids together.

A water molecule is removed

when a peptide bond is formed

• dehydration synthesis!

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Protein Synthesis:

The mRNA (produced in the nucleus during

transcription) travels to the ribosome to begin the

process of translation.

Once at the ribosome, the mRNA is read 3

nucleotides at a time.

A codon is a combination of three sequential

nucleotides on mRNA.

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Protein Synthesis:

There are 64 different

codons.

Each codon specifies a

particular amino acid that is

to be placed in the

polypeptide chain.

AUG is the “initiator” codon.

There are 3 “stop” codons.

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Protein Synthesis: Translation involves mRNA, rRNA,

and tRNA.

transfer RNA (tRNA) carries the

amino acids to the ribosome -

different tRNA for each amino acid

ribosomal RNA (rRNA) makes up

the major part of the ribosome.

Three sequential nucleotides on a

tRNA molecule are called an

anticodon.

The anticodon on the tRNA is

complementary to the mRNA

codon

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Protein Synthesis

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Protein Synthesis:

tRNA UAC AAG UUU CGC UUA GUC CUA

anticodon

mRNA AUG UUC AAA GCG AAU CAG GAU

codon

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Protein Synthesis: Each codon & anticodon bind together (H bonds)

a peptide bond forms between the two amino acids.

The polypeptide chain continues to grow until the

ribosome reaches a stop codon.

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Protein Synthesis: A stop codon is a codon for which NO tRNA

molecule exists.

The ribosome releases the newly formed polypeptide.

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Protein Synthesis:

From DNA to Protein 3D (2:41)

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CENTRAL DOGMA – process of transcription of DNA to RNA

followed by translation of mRNA into protein

The Central

Dogma of

Biology (2:51)

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PROTEIN SYNTHESIS IN EUKARYOTIC CELLS

Ribosomes on the ER synthesize proteinsRibosomes in the cytoplasm synthesize

proteins

ER modifies the protein and

then encloses it in a vesicle

The vesicle moves through the

cell to the Golgi apparatus

The Golgi apparatus further modifies the

protein & then encloses it in another vesicle

The vesicle moves out of the Golgi

apparatus to the plasma membrane

The protein moves through the plasmas

membrane to outside of the cell - exocytosis

Proteins are used inside the cell

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DNA

Transcription

mRNA

Protein

Made of Amino Acids

Translation

(Ribosome)

Central Dogma

flow of genetic information from DNA to RNA to Protein

Nucleus

Cytoplasm

DNA transcription and translation Animation (7:17)

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MutationsSection 13.3

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Types of Cells Affected Germ Mutation - affects a reproductive cell (gamete or

sperm/egg)

Does not affect the organism

Passed to offspring

Somatic Mutation – affects body cells

(all cells except gametes)

Not passed to offspring

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Types of Mutations All mutations fall into two basic categories:

Those that produce changes in a single gene are known as gene

mutations.

Those that produce changes in a part of a chromosome, whole

chromosomes, or sets of chromosomes are known as chromosomal

mutations.

Ameoba Sisters – Mutations (7 min)

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Mutagens Mutations can be caused by chemical or physical agents -

mutagens

Chemical – pesticides, tobacco smoke, environmental

pollutants

Physical – X-rays and ultraviolet light

Animated Intro to Cancer (12:07)

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Gene Mutations

Mutations that involve changes in one or a few

nucleotides are known as point mutations because

they occur at a single point in the DNA sequence. They

generally occur during replication.

If a gene in one cell is altered, the alteration can be

passed on to every cell that develops from the original

one.

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Gene Mutations Point mutations include substitutions,

insertions, and deletions.

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Substitutions In a substitution, one base is changed to a different base.

Substitutions usually affect no more than a single amino acid,

and sometimes they have no effect at all.

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Substitution - Silent Mutation A change in one base pair has no effect on the protein produced by the

gene.

This is allowed for by the redundancy in the genetic code.

Example (as shown in picture):

Both GGC and GGU code for the amino acid glycine.

Thus, the mutation is “silent,” i.e. causes no change in the final protein product.

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Substitution - Missense Mutation A change in one base pair causes a single amino acid to be changed in

the resulting protein.

The result is called “missense” since the code is now different.

The effect of a missense mutation on the protein is unpredictable.

In the following example, GGC has been changed to AGC, resulting

in a different amino acid.

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Substitutions – Missense Example

In this example, the base cytosine is replaced by the

base thymine, resulting in a change in the mRNA

codon from CGU (arginine) to CAU (histidine).

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Sickle Cell Anemia A missense mutation is the cause of the disease, sickle cell anemia.

a change in one base pair alters one amino acid

effects hemoglobin protein, causing red blood cells to take

on a strange shape

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Sickle Cell Anemia

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Substitution - Nonsense Mutation a change in a single base pair creates a stop codon.

Because this kind of mutation creates a stop signal in the middle of a

normally functional gene, the resulting protein is almost always

nonfunctional

hence the term “nonsense” mutation.

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Substitution

Silent

Mutation

Missense

Mutation

Nonsense

Mutation

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Insertions and Deletions Insertions and deletions are point mutations in which one

base is inserted or removed from the DNA sequence.

If a nucleotide is added or deleted, the bases are still read in

groups of three, but now those groupings shift in every codon

that follows the mutation.

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Frameshift Mutation Insertions and deletions are also called frameshift

mutations because they shift the “reading frame” of the

genetic message.

Frameshift mutations can change every amino acid that

follows the point of the mutation and can alter a protein

so much that it is unable to perform its normal functions.

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Frameshift Mutation:

Example:

Deletion:

THE FAT CAT ATE THE RAT

THE FAT ATA TET HER AT

Insertion:

THE FAT CAT ATE THE RAT

THE FAT CAR TAT ETH ERA T

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Insertions

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Deletions

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Muscular Dystrophy Both Duchenne muscular dystrophy and Becker muscular dystrophy result from mutations of a

gene on the X chromosome that codes for the dystrophin protein in muscle cells; this protein helps to stabilize the plasma membrane during the mechanical stresses of muscle contraction. About 2/3 of cases are due to deletion mutations.

If the number of nucleotides deleted in the mRNA is not a multiple of three, this type of FRAMESHIFT mutation results in a severely defective or absent version of the protein, resulting in more rapid breakdown of muscle cells and the more severe DUCHENNE muscular dystrophy.

If the number of nucleotides deleted in the mRNA is a multiple of three, the mutation does not cause a frameshift and this typically results in a less defective version of the protein, less rapid breakdown of muscle cells, and the milder BECKER muscular dystrophy.

Up to one-fifth of cases of Duchenne muscular dystrophy are caused by a nonsense mutation (a point mutation that results in a stop codon).

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Gene Mutations

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Substitution

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Frameshift Mutation

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13.4 Gene Regulation Prokaryotes – DNA binding proteins regulate genes by controlling

transcription

Operons – group of genes that are regulated together; have related functions Genes in an operon usually have related functions

Lac operon – 3 lactose genes in E.coli; turned on or off depending if lactose is present/absent Must be turned on together before bacterium can use the sugar lactose as a food

Amoeba Sisters Gene Expression

(6:15)

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Promoters and Operators Promoter (P) – site where RNA

polymerase can bind to begin transcription

Operator (O) – is where DNA binding protein known as the lac repressor can bind to DNA

Lac repressor blocks transcription when bound to the O region.

Switches operon OFF by preventing RNA polymerase to transcribe lac genes

Lactose turns Operon ON by attaching to the lac repressor, changing its shape and falling off the operator

Repressor no longer bound to O site, RNA polymerase can bind to the promoter and transcribe the genes of the operon.

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Eukaryotes – by binding DNA sequences in the regulatory

regions of eukaryotic gene, transcription factors control the

expression genes

Important for Differentiation – cells are specialized in

structure and function

Master control genes are like switches that trigger particular

patterns of development and differentiation in cells and tissues

Regulated Transcription (3:37)

13.4 Gene Regulation