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CHAPTER 16 The Citric Acid Cycle
– Cellular respiration– Conversion of pyruvate to activated acetate – Reactions of the citric acid cycle– Regulation of the citric acid cycle– Conversion of acetate to carbohydrate precursors
in the glyoxylate cycle
Key topics:
Only a Small Amount of Energy Available in Glucose is Captured in
Glycolysis
2G’° = -146 kJ/mol
Glycolysis
Full oxidation (+ 6 O2)
G’° = -2,840 kJ/mol6 CO2 + 6 H2O
GLUCOSE
Cellular Respiration
• process in which cells consume O2 and produce CO2
• provides more energy (ATP) from glucose than glycolysis
• also captures energy stored in lipids and amino acids
• evolutionary origin: developed about 2.5 billion years ago
• used by animals, plants, and many microorganisms
• occurs in three major stages:
- acetyl CoA production
- acetyl CoA oxidation
- electron transfer and oxidative phosphorylation
Respiration: Stage 1
Generates some:ATP, NADH, FADH2
Respiration: Stage 2
Generates more NADH, FADH2 and one GTP
Respiration: Stage 3
Makes lots of ATP
In Eukaryotes, Citric Acid Cycle Occurs in Mitochondria
• Glycolysis occurs in the cytoplasm• Citric acid cycle occurs in the mitochondrial matrix†
• Oxidative phosphorylation occurs in the inner membrane
† Except succinate dehydrogenase, which is located in the inner membrane
Conversion of Pyruvate to Acetyl-CoA
• net reaction: oxidative decarboxylation of pyruvate
• acetyl-CoA can enter the citric acid cycle and
yield energy
• acetyl-CoA can be used to synthesize storage
lipids
• requires five coenzymes
• catalyzed by the pyruvate decarboxylase complex
Pyruvate Dehydrogenase Complex (PDC)
• PDC is a large (Mr = 7.8 × 106 Da) multienzyme complex
- pyruvate dehydrogenase (E1)
- dihydrolipoyl transacetylase (E2)
- dihydrolipoyl dehydrogenase (E3)
• short distance between catalytic sites allows channeling
of substrates from one catalytic site to another
• channeling minimizes side reactions
• activity of the complex is subject to regulation (ATP)
Cryoelectronmicroscopy of PDC
• Samples are in near-native frozen hydrated state
• Low temperature protects biological specimens against radiation damage
• Electrons have smaller de Broglie wavelength and produce much higher resolution images than light
Three-dimensional Reconstruction from Cryo-EM data
Sequence of Events in Pyruvate Decarboxylation
• Step 1: Decarboxylation of pyruvate to an aldehyde
• Step 2: Oxidation of aldehyde to a carboxylic acid
• Step 3: Formation of acetyl CoA
• Step 4: Reoxidation of the lipoamide cofactor
• Step 5: Regeneration of the oxidized FAD cofactor
Chemistry of Oxidative Decarboxylation of Pyruvate
• NAD+ and CoA-SH are co-substrates
• TPP, lipoyllysine and FAD are prosthetic groups
Structure of CoA
• Recall that coenzymes or co-substrates are not a permanent part of the enzymes’ structure; they associate, fulfill a function, and dissociate
• The function of CoA is to accept and carry acetyl groups
Structure of Lipoyllysine
• Recall that prosthetic groups are strongly bound to the protein. In this case, the lipoic acid is covalently linked to the enzyme via a lysine residue.
The Citric Acid Cycle
Sequence of Events in the Citric Acid Cycle
• Step 1: C-C bond formation to make citrate
• Step 2: Isomerization via dehydration, followed by
hydration
• Steps 3-4: Oxidative decarboxylations to give 2
NADH
• Step 5: Substrate-level phosphorylation to give GTP
• Step 6: Dehydrogenation to give reduced FADH2
• Step 7: Hydration
• Step 8: Dehydrogenation to give NADH
Net Effect of the Citric Acid Cycle
Acetyl-CoA + 3NAD+ + FAD + GDP + Pi + 2 H2O
2CO2 +3NADH + FADH2 + GTP + CoA + 3H+
• carbons of acetyl groups in acetyl-CoA are
oxidized to CO2
• electrons from this process reduce NAD+ and FAD
• one GTP is formed per cycle, this can be
converted to ATP
• intermediates in the cycle are not depleted
Direct and Indirect ATP Yield
Role of the Citric Acid Cycle in Anabolism
Regulation of the Citric Acid Cycle