View
277
Download
0
Embed Size (px)
Citation preview
Carl Woese’s 3 Domains
Based on rRNA nucleotide sequencesWhy use this as a basis for classification?
Organisms in the 3 Domains
• Eukarya - kingdoms: plantae, animalia, fungi, protists
• Archaea - prokaryotes
• Bacteria - prokaryotes
2 Types of Prokaryotic Cells
• Eubacteria– cell walls contain
peptidoglycan
– different nucleotide sequences in rRNA
– different membrane lipids
• Archaebacteria– no peptidoglycan– rRNA– lipids– live in extreme
environments
ex. Thermoacidophiles
Extreme halophiles
Methanogenshttp://www.ucmp.berkeley.edu/archaea/archaea.html
Naming organisms (nomenclature)
Binomial system uses 2 names
Genus speciesex. Bacillus subtilis
ex. Clostridium tetani
ex. Staphylococcus aureus
Is tubercle bacillus the scientific name of an organism or a common name?
Taxonomic Categories
Order ends in –ales in fungi, plantae & bacteria
Family ends in- aceae infungi, plantae & bacteria
Species of bacteria - “population of cells with similar characteristics”
Strain of bacteria - “group of cells derived from a single cell”
ex. Staphylococcus aureus 13578
Classification vs. Identification Techniques
Bergey’s Manual of Determinative Bacteriology uses:
• microscopic appearance
• biochemical reactions
• growth requirements
• serology
• phage typing
Classification or identification??
Bergey’s Manual of Systematic Bacteriology establishes phylogenetic relationships by:
• amino acid sequencing• protein analysis• rRNA sequencing – ribotyping
– Why is rRNA rather than other types of RNA used?• Chapter 10
• nucleic acid hybridization
Classification or identification??
Spirochetes
Axial filaments for motility
Examples:
Treponema pallidum - syphillis
Borrelia burgdorferi - Lyme disease
Leptospira interrogans - leptospirosis
Axial Filaments
Movement of spirochetes
Bundles of fibrils that arise at the end of the cell beneath the outer sheath & spiral around the cell
Ex. Treponema pallidum
Structure
Filament
Hook
Basal body
Campylobacter jejuni
• microaerophilic
• motile vibrio
• Gram negative
• animals esp poultry & cattle
• grows @ 42oC
• most commonly identified bacterial cause of diarrhea in world (CDC)
– unpasteurized milk
– food
Pseudomonas aeruginosa
• Gram negative aerobic rod
• “bacillus of blue-green pus”– pyocyanin pigment
• fermented grape smell• normal flora
– skin & intestine• unusual carbon sources• antibiotic resistant• infections
– wound, ear, urinary, respiratory, burns
Gram negative aerobic cocci
Neisseria gonorrhoeae in pus
Neisseria meningitidis
Branhamella catarrhalis
Enterobacteriales
Non-pathogens• Escherichia• Klebsiella• Proteus• Serratia• Etc.
Family- enterobacteriaceae
Describe the microscopic appearance of these organisms.
Enterobacteriaceae cont’dPathogens• Salmonella (typhi)
– typhoid fever
• Shigella (dysenteriae)– bacillary dysentery
• Yersinia (pestis)– bubonic plague
Can you see why the family, enterobacteriaceae, has been referred to as the Colon-typhoid-dysentery group?
Can you differentiate the pathogens from the non-pathogens microscopically?
All members of Enterobacteriaceae are facultative anaerobes. Meaning?
Hemophilus influenzae
• Aerobic Gram negative rod
• Normal flora in intestine and respiratory tract
• Most common cause of meningitis in children– Hib vaccine
• Also causes otitis media, pneumonia, epiglottitis
Why is the name of this organism misleading?
What can you learn from the name?
Bacteroidaceae - Bacteroides fragilis
• Gram negative anaerobic rods
• Found in the human intestine & mouth– 95% of the bacteria in a stool
specimen & 20% of the weight!
– One billion per gram of feces!
• Most common anaerobe isolated from infections– appendicitis, peritonitis,
complicate abdominal surgery
Rickettsia & ChlamydiaGram negative obligate intracellular parasites
Rickettsiatransmitted to humans by insects & ticks
Ex. Rickettsia rickettsii - Rocky Mountain spotted fever
ChlamydiaNot transmitted by insects
Chlamydia trachomatisCauses:
1.Trachoma - world’s leading infectious cause of blindnessMiddle East, North Africa, India
2.Non-gonococcal urethritis common std in U.S.
Chlamydia psittaci causes:
1. Psittacosis (“parrot fever”)
2. Ornithosis
Chlamydia pneumoniae - pneumonia
Mycoplasmas
• No cell wall– pleomorphic– penicillin sensitive or
resistant?• Smallest free-living
organisms• Microscopic fried-egg
colonies• Ex. Mycoplasma
pneumoniae
Staphylococcus aureus
• Gram positive cocci, clusters
• Yellow pigment
• Causes– common food poisoning– surgical wound infections
• resistance
– toxic shock syndrome
Streptococcus pyogenes
• Gram positive cocci in chains
• Diseases– pharyngitis (sore throat)– scarlet fever *– erysipelas *
* look for a description of this disease
Endospore-Forming Gram Positive Rods
• Bacillales - Bacillus– aerobes or facultative anaerobes– common in soil– ex. Bacillus anthracis, Bacillus subtilis
• Clostridiales - Clostridium– obligate anaerobes– found in soil– diseases
• tetanus (Clostridium tetani), botulism (C. botulinum), gas gangrene (C. perfringens)
Corynebacterium
Characteristics of Corynebacterium sp.:
• pleomorphic Gram positive rod
• metachromatic granules
• unusual arrangements– palisades
– Chinese letters
• C.diphtheriae causes diphtheria
Mycobacteria
Characteristics of Mycobacterium sp.
• Gram positive small rods• acid-fast
– mycolic acid complexed with peptidoglycan (waxy)
• diseases:– tuberculosis– leprosy (M. leprae)
Acid-fast stain of sputum showing Mycobacterium tuberculosis
Streptomycetes
Characteristics of Streptomyces:
• mold-like bacteria– branching, spores
• produce geosmin– soil smell
• several species produce antibiotics– ex. streptomycin