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DNA double-strand breaks (DBS). Irradiation Dna replication Meiosis and V(D)J recombination. Double strand break. unrepaired. Mis-repaired. Carcinogenesis. Cell death. Chromosomal rearrangements. Repair Pathways. Homologous recombination which functions in late S/G2 - PowerPoint PPT Presentation
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DNA double-strand breaks (DBS)
Irradiation Dna replication
Meiosis and V(D)J recombination
Double strand break
unrepaired
Cell death
Mis-repaired
Chromosomal rearrangements
Carcinogenesis
Repair Pathways
• Homologous recombination which functions in late S/G2
• DNA non-homolgous end-joining (NHEJ)which plays the major role in the repair of radiation-induced DSBs
Rag1&Rag2 T-B-SCIDOmenn Syndrome
Ku70&Ku80
DNA-PKcsArtemis
Rs-T-B-SCID TdT, Xrcc4 & Dna ligaseIV
Chromosomal instability Immunodeficiency Growth retardation
SCID T- B-
Rag dependent
Artemis dependent sensitivity to IR
Normal sensitivity to IR
+
hairpin formation
joining
Signal joint
nicking
5'3'
coding joint
5'3'
5'3'
"P" "N" nucleotides
V J
Rag1Rag2
3'3'OH5'
5'OH
5'3' 5'
3'
1) They recognize recombination signal sequences
(RSSs) which flank each coding element;
2) They introduce a double strand break at the border
of the RSS and the coding flank;
RAG FUNCTIONS
3) They process hairpin structures and 3’ overhangs
that are postulated recombination intermediates
NULL MUTATIONS in RAGs
Block of V(D)J recombination process
T-B- SCID
Rags Mutations in Omenn
Partial V(D)J recombination
Omenn syndrome (T+B- scid)
• Early-onset erythrodermia (GvH-like)
• Lymphadenopathy
• Hepatosplenomegaly
• Severe hypoprotidemia
• Eosinophilia
• Lack of circulating B cells
• Hypogammaglobulinemia, but elevated IgE
• Presence of activated, anergic autologous T cells*
• Lethal, unless treated with BMT
*presence of maternally-engrafted T cells must be ruled out!
OMENN SYNDROMECLINICAL AND LABORATORY FEATURES
Patient 301 Spectratype pre-BMT
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28
300bp
225bp
200bp
176bp
300bp
225bp
200bp
176bp
Lane1: Spetratype standard
Lane2: sv1
Lane3: sv2
Lane4: sv3
Lane5: sv4
Lane6: sv5.1
Lane7: sv5.3
Lane8: sv6.1
Lane9: sv6.2
Lane10: sv7
Lane11: sv8
Lane12: sv9
Lane13: sv10
Lane14: sv11
Lane15: sv12
Lane16: sv13
Lane17: sv14
Lane18: sv15
Lane19: sv16
Lane20: sv17
Lane21: sv18
Lane22: sv19
Lane23: sv20
Lane24: sv21
Lane25: sv22
Lane26: sv23
Lane27: sv24
Lane28: Spetratype standard
Legend:
TCRBV6TCRBV1
TCRBV1CTGTGCCAGCA GACAGGGG AATTCACCCC
CTGTGCCAGCAGCGTAG
CTGTGCCAGCAGC
CTGTGCCAGCAGC
CCGG
GGACTAG CTACGAGC
CAGGG CCTG CCTACGAGC
CC GGGG AA CTCCTACGAGC
N D N J
1S62S7
2S7
2S7
CTGTGCCAGCACCCGATTGATCGGGGCCCCACAAGT CACAGATACGC
CTGTGCCAGCAGCT GGACAGGGGG CTACGAGC
CTGTGCCAGCAGCTTA ATTGG TAGCG AGGG CGAGC
TCRBV6 N D N J2S3
2S7
2S7
T CELL REPERTOIRE IN PATIENT M.G. WITH OMENN SYNDROME
Catalytic core
GGRPR
Dna binding domain
RAG 1
D D E
Rag1 N-terminal
Heptamer and nonamer
binding domainRag1 C-terminal
coding DNA binding domain
Coding DNANonamer
SpacerHeptamer
389 GGRPR
INT-homology domain
RAG-1 MUTATIONS IN OS AND IN T- B- SCID
1 1043
R396CR396H
D429G
R561H Y912CR561C
R737H
S401P
A444V
W522C
M458I
E722Kdel 368-369 ->K86fsR507W
E774X
Y938XR897X
L872X
W959X
E719K
Basic domains I, IIa, IIb, III interaction with Srp1
Ring finger domain
Zinc finger domain A
-helix domain DNA binding
Core domain cleavage
Zinc finger domain B catalytic activity
homodimerization
N-terminal domain
INT-homology domain
1 1043
del 368-369 ->K86fs
Which role?
Through the analysis of RAG genes in Omenn patients we detected 7 patients bearing
deletions at RAG1 N-terminal:
OS8 homoz. D368A/369AOS5, OS9-12 heteroz. D368A/369A*OS13 homoz. D887A*the other mutated allele varied between each patient
N-terminal RAG1 role
OS5 del 368 D429G
OS 8 del 368
OS 9 del 368 R624C
OS10 del 368 E722K
OS11 del 368 R829X
OS12 del 368 frameshift
N-terminal Rag1 role
Basic domains
CONCLUSIONS
DELETION AT THE N-TERMINUS OF RAG1 PREDICTS FRAMESHIFTS LEADING TO
TRUNCATED PROTEIN ALLOWING PARTIAL ACTIVITY IN VDJ RECOMBINATION PROCESS
RAG2
Acid regionCatalytic core
RAG2 active core contains six internal repeats of 50 aa identified in the Drosophila kelch protein.
1 382
III
III
IV
V
VI
1273
G95R
RAG2 SIX PROPELLER BLADES
YY 1MSLQMVTVGHNIALIQP GFSLMNFD ……………… GQVFFFGQKG ………………WPKR……………… SCPTGVFHF ……DIKQ……… NHLKLKPA
AA2 IFSKDSCYLPPLRY PATCSYKG SIDSDK HQYIIHGGKT ………………PNN………………… ELSDKIYIM SVACKNNKK VTFRCTEK
AA3 DLVGDVPEPRY GHSIDVVY …SRGK… SMGVLFGGRS YMPSTQRTTEKWNSVA DCLPHVFLI …DFEFGCA… TSYILPEL
FA 4 QDGLSF HVSIARN ………………… DTVYILGGHS ………………LASN……………… IRPANLYRI RVDLPLGT… PAVNCTVL AFAA
AA 5 PG GISVSSAI LTQTNN… DEFVIVGGYQ ………………LENQ……………… KRMVCSLVS ……LGDNT…… IEISEMET
AY 6 PDWTSDI KHSKIWFG …SNMG… NGTIFLGIPG ……………DNKQAM…………… SEAFYFYTL …RCSEEDL… SEDQKIVS
-STRAND 1
-STRAND 2
-STRAND 3
LOOP 4-1 LOOP 1-2
LOOP 2-3
LOOP 3-4
-STRAND 4
1 3821 382
Catalytic core
MUTATION OF THE HYDROPHOBIC RESIDUES
1MSLQMVTVGHNIALIQP GFSLMNFD ……………… GQVFFFGQKG ………………WPKR……………… SCPTGVFHF ……DIKQ……… NHLKLKPA
A L2 IFSKDSCYLPPLRY PATCSYKG SIDSDK HQYIIHGGKT ………………PNN………………… ELSDKIYIM SVACKNNKK VTFRCTEK
A L3 DLVGDVPEPRY GHSIDVVY …SRGK… SMGVLFGGRS YMPSTQRTTEKWNSVA DCLPHVFLI …DFEFGCA… TSYILPEL
A L 4 QDGLSF HVSIARN ………………… DTVYILGGHS ………………LASN……………… IRPANLYRI RVDLPLGT… PAVNCTVL
A L 5 PG GISVSSAI LTQTNN… DEFVIVGGYQ ………………LENQ……………… KRMVCSLVS ……LGDNT…… IEISEMET 6 PDWTSDI KHSKIWFG …SNMG… NGTIFLGIPG ……………DNKQAM…………… SEAFYFYTL …RCSEEDL… SEDQKIVS
-STRAND 1
-STRAND 2
-STRAND 3
LOOP 4-1 LOOP 1-2
LOOP 2-3
LOOP 3-4
-STRAND 4
MUTATIONS IN RAG2 Gly-Ser-Thr REGIONS
POINT MUTATIONS IN THE SECOND STRAND
YY 1MSLQMVTVGHNIALIQP GFSLMNFD ……………… GQVFFFGQKG ………………WPKR……………… SCPTGVFHF ……DIKQ……… NHLKLKPA
AA A L2 IFSKDSCYLPPLRY PATCSYKG SIDSDK HQYIIHGGKT ………………PNN………………… ELSDKIYIM SVACKNNKK VTFRCTEK R
AA A L3 DLVGDVPEPRY GHSIDVVY …SRGK… SMGVLFGGRS YMPSTQRTTEKWNSVA DCLPHVFLI …DFEFGCA… TSYILPEL
FA A L 4 QDGLSF HVSIARN ………………… DTVYILGGHS ………………LASN……………… IRPANLYRI RVDLPLGT… PAVNCTVL AFAAPPAA
AA A L 5 PG GISVSSAI LTQTNN… DEFVIVGGYQ ………………LENQ……………… KRMVCSLVS ……LGDNT…… IEISEMET A A AY L L LA 6 PDWTSDI KHSKIWFG …SNMG… NGTIFLGIPG ……………DNKQAM…………… SEAFYFYTL …RCSEEDL… SEDQKIVS N AQ L
-STRAND 1
-STRAND 2
-STRAND 3
LOOP 4-1 LOOP 1-2
LOOP 2-3
LOOP 3-4
-STRAND 4
MUTATIONS IN HYDROPHOBIC AND GLYCINE-RICH
REGIONS WITHIN THE SECOND -STRAND
Severe effect on VDJ process
1MSLQMVTVGHNIALIQP GFSLMNFD ……………… GQVFFFGQKG ………………WPKR……………… SCPTGVFHF ……DIKQ……… NHLKLKPA
2 IFSKDSCYLPPLRY PATCSYKG SIDSDK HQYIIHGGKT ………………PNN………………… ELSDKIYIM SVACKNNKK VTFRCTEK R*
3 DLVGDVPEPRY GHSIDVVY …SRGK… SMGVLFGGRS YMPSTQRTTEKWNSVA DCLPHVFLI …DFEFGCA… TSYILPEL
4 QDGLSF HVSIARN ………………… DTVYILGGHS ………………LASN……………… IRPANLYRI RVDLPLGT… PAVNCTVL
5 PG GISVSSAI LTQTNN… DEFVIVGGYQ ………………LENQ……………… KRMVCSLVS ……LGDNT…… IEISEMET 6 PDWTSDI KHSKIWFG …SNMG… NGTIFLGIPG ……………DNKQAM…………… SEAFYFYTL …RCSEEDL… SEDQKIVS
-STRAND 1
-STRAND 2
-STRAND 3
LOOP 4-1 LOOP 1-2
LOOP 2-3
LOOP 3-4
-STRAND 4
1 382
Catalytic domain
V
MUTANTS IN LOOP REGIONS
R229Q
RAG2 Omenn mutations
Omenn mutations
Variable loop regions of Kelch
repeat
Acid region
Mild effect on VDJ process
MUTANT ALLELES IN 44 PATIENTS WITH
RAG-DEPENDENT IMMUNE DEFICIENCY
MFT
100
Atypical SCID /OS
0
10
20
30
40
50
60
70
80
90
T- B- SCID CID with OS
missense
null mutations
%
*
* including nonsense, frameshift mutations, and deletions
MOLECULAR FINDINGS
We can consider three groups:
1) T-B-SCID patients
(no T and B cells)
2) Atypical T-B- SCID patients
( few T and/or B cells)
3) Omenn patientsPartial Rag activity
No Rag activity
R396C
* Atypical Scid
@Omenn syndrome
A444V * Atypical SCID
@Omenn syndrome
R229WR229Q
* Atypical SCID
@Omenn syndrome
* Atypical SCID
@Omenn syndrome
R561H
+
hairpin formation
joining
Signal joint
nicking
5'3'
coding joint
5'3'
5'3'
"P" "N" nucleotides
V J
Rag1Rag2
3'3'OH5'
5'OH
5'3' 5'
3'
Artemis
Artemis
• Greek goddess Artemis, a guardian of young children and small animals
• J.P de Villartay and Despina Moshous discovered Artemis as the gene responsible for RS-T-B-SCID (Cell 105,2001)
Humans Mice and Genomic instability
• Artemis patients show defects in coding joint formation but not signal joints- defects in hairpin opening
• KO Mice show defects in coding joints, murine fibroblasts have striking genomic instability
Artemis as genome guardian
• D.Moshous described lymphoma after EBV infection in patients with hypomorphic Artemis mutations
• Artemis is also important for general DNA damage repair
Rag1 Rag2
Hairpin coding ends
Signal ends
Coding joint Signal joint
PKA
A
TdT
Rag1Rag2
PK
Rag2Rag1OH
HO
NNNNNNNNNN
Coding joints
Hairpin opening
1 2 3 4 5 6 7 98 10 11 12 13 14
Metallo lactamase caspase
*S119X I16T
Artemis as genomic care taker
0,001
0,01
0,1
1
10
100
0 1 2 3 4 5
Gy
Su
rviv
al
CT
ATGS
PT 5
PT 4
PT 3
PT 2
PT 1
0
25
50
75
100
0 1 3 5
MMC
Su
rviv
al
CT
PT 5
PT 4
PT 2
Pt 3
XP-F
PT 1
1BR3
0
25
50
75
100
0 2 4 6
Cisplatin
Su
rviv
al NIG
Melis
Zengin
Infante
Testa
XP-F
Artemis and genomic instability
Anna VillaAntonio Musio
Veronica MarrellaPaolo Vezzoni
CNR-LITAMilano, Italy
L.Notarangelo
S.Giliani
S.Santagata
E.Spanopolou
P. Cortes