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Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Do defects amplify in a self-replicating self-correcting & self-maintaining machine

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Page 1: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Page 2: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Page 3: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

« As long as theyare

mortals, humanbeings won't betotally relaxed»

Woody Allen

Page 4: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Survival curves improved drastically since the XVIII century

Riley, Rising life expectancy

Page 5: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

As all phenotypes, survival depends on genotype and environment and …

Garsin, Science Juin 2003

Page 6: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Since the 18th century, life expectancy increased at all ages

Riley, Rising life expectancy

Page 7: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

After childhood mortality, mortality grows exponentiallywith age (gompertz law)

Caleb Finch

Page 8: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Stress & age have multiplicative effects !

Caleb Finch

Page 9: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

1E-4

1E-3

,01

,1

1

death

rate

f re

nch

w

om

an

94

0 20 40 60 80 100

age

10

100

1000

med

ical cost

f

ran

ce

0 10 20 30 40 50 60 70 80 90 100

age

Both death rate and medical cost grow exponentially with age

Thus understanding the mechanisms of exponential aging should have huge public health and economic consequences

Page 10: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Mortality increases fast with too rich diets

Mair Sept 2003, Science

Page 11: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Vaupel, 2003, Science

it is never too late… improving the environment increases lifespan at old age

Page 12: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

A general trend:mortality first grows exponentially and then slower

Page 13: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

aging projects• Follow individuals throughout life span and look for

markers associated with timing of death

• Analyse mutants leading to faster/slower death analysing the whole distribution of mortality patterns

• Develop rapid feedback betweenmodelling & experiments to test hypothesis

Test other model systems to look for general scenarii

Page 14: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Trade-off between life span and number of offsprings

180

lifespan (years)

Num

ber

of o

ffsp

ring

(lo

g s

cale

)

0 10 20 30 40 60 7050 80

100

50

20

15

10

0

From R. Holliday, Understanding ageing, 1994

Mammals

0

2

4

6

8

10

12

0 10 20 30 40

lifespan (days)

Bacteriophages

Log

(of

fspr

ing/

hour

)

Page 15: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Main evolutionary transitions

J. Maynard-Smith & E. Szathmary

Prebiotic chemistry -------> Autocatalytic Replication

Self-replicated molecules -------> cell

Cell -------> multicellular organism

Organism -------> Society

Innate individual behavior -------> culture

Each transition is associated with a « conflict » between replicators

Page 16: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Co-evolution lead to interaction of organisms of interests that

• Diverge (competition, predator/prey, host/parasites) red queen & arm races

• Converge (cooperation, mutualism) John Maynard Smith developped evolutionary game theory to study their instability due to short term benefit of cheaters

Dangerous liaisonsTransition from one to the other viaenvironmental changeMutation

Time-scales of biological dynamicsMolecular << life span < < ecological << evolution The coevolving replicators can have different time scales

Page 17: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Conflicts between replicators as causes of individuals death

• Molecules vs cellule eg prion, aggregate

• Cellular vs multi-cellular eg cancer

• Individual vs society eg nihilism, wars

• Idea vs individual eg suicide

Page 18: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Main causes of deaths today• infectious diseases and hunger (3rd world) • aging related disease (cancer, neurodegeneration)• behaviorally associated causes:

suicide, wars, accidents, tobacco, alcool, drugs…

Junk food  our genomes have evolved in lack of food, sugar, animal fat, saltthese tendencies are used by food/marketing industry

the current world wide epidemic of obesity could decrease life expectancy by 9 years.

Prevention is generally easier/cheapier than curing

Page 19: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

“We humans are the onlyspecies endowed with thecapacity to rebel againstthe tyranny of our selfishgenes”

Richard Dawkins“The Selfish Gene” 1976

Page 20: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Cigarettes & cancer

Cairns, matters of life and death

Page 21: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

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Page 22: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Cancer incidence versus the number ofactive p53 genes

(1) No active p53 genes is catastrophic (p53-/-mice).

(1) (2) One p53 gene is better but still toomany cancers too early.

(1) (3) Two p53 gen es (normal mice andhumans): could be better.

(1) (4) Three or four p53 genes (mice): canceris much reduced

Page 23: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Piccinini 2002

Page 24: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

S ub -S a ha ranA fr ica

Russia

Japan

USA

Rome

Paleolithic

20

30

50

60

70

80

40

Life Expectancy Trends: Paleolithic On

Present (1990) (1900) 1000 10000 100,000

Y e a r s b e f o r e p r e s e n t ( l o g s c a l e )

Page 25: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Courbe de survie chez les chasseurs-cueilleurs

Page 26: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

L’espérance de vie décroît à Rome… (les épidémies sont favorisées par la fréquence des contacts)

Page 27: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

L’espérance de vie croît dès le 18e siècle…

Page 28: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Life expectancy still grows steadily & linearly

Oepen, Science 2002

Page 29: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

10-4

10-3

10-2

10-1

1

death

rate

f r

en

ch

w

om

an

1994

0 20 40 60 80 100

age

Gompertz law : mortality rate double every 8 years

Page 30: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Tuberculosis : environment before medicine ?!

Cairns, matters of life and death

Page 31: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Tuberculose : effet modéré des antibiotiques ?!

Page 32: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Being rich helps but is not the only secret to long life

Page 33: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Mieux vaut être riche et en bonne santé !?

Page 34: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Effet de l’éducation sur la survie

Cairns, matters of life and death

Page 35: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

Why change ?Population geneticsGodelle Gouyon Brown Maynard-Smith

Change where ?Microbial ecology Fons

Who changes ?Molecular epidemiologyBinguen Denamur Picard Brisabois Berche

Interdisciplinary approaches of bacterial variability

GiraudLechatBambou

B. ToupanceO. TenaillonJ-B André

Duriez

Change what?Bio-informaticsRocha

Who has changed ?Molecular PhylogenyLecointre Darlu

How to change ? Molecular biology Matic Radman Vulic Dionisio BjedovBregeon Leroy Hayakawa Sekiguchi Dukan

Change when ?transcriptome analysis Knudsen Cerf

Phenotypic variability & agingLife History Stewart Madden Lindner Paul Gabriel Fontaine Depaepe Bredèche Mosse r Diard

Page 36: Do defects amplify in a self-replicating self-correcting & self-maintaining machine

QuickTime™ et un décompresseurPhoto - JPEG sont requis pour visualiser

cette image.

Propagation des idées et des techniques(progrès technologiques, scientifiques, médicaux et communication)

van Leeuwenhoek