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The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 1
Eukaryotic
Cells and
Microorganisms
Chapter 5
Copyright © The McGraw-Hill Companies, Inc) Permission required for reproduction or display.
Cellular Acellular
Prokaryotes Eukaryotes Viruses
Bacteria and archaea
Fungi, protozoa, and helminths
Viruses and bacteriophages
Types of Microbes
Bacterial virus
AIDS virus
Envelope
Capsid
Nucleic
acid
Prokaryotic
Chromosome
Ribosomes
Cellwall Cell
membrane
Eukaryotic
Ribosomes
Cell membrane
Nucleus
Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display.
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 2
5.1 The History of Eukaryotes
First eukaryotic cells on earth approximately 2 billion years ago
Evidence points to these eukaryotic cells evolving from prokaryotic organisms through intracellular symbiosis
Eukaryotic organelles originated from prokaryotic cells trapped inside of them
First primitive eukaryotes- probably single-celled and independent
Eventually formed colonies
Cells within colonies became specialized
Evolved in to multicellular organisms
Eukaryotic vs. Prokaryotic Cell
Larger in size
Contains a nucleus
Division of labor
Organelles
Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display.
Mitochondrion Cell wall*
Cell membrane
Golgi apparatus
Actin filaments
Ribosomes
Plasmid
Intermediate
filaments
Lysosome
Smooth
endoplasmic
reticulum
Microtubules
Chloroplast*
*Structure not present in all cell types
Rough endoplasmic
reticulum with
ribosomes
Flagellum*
Nuclear
membrane
with pores
Nucleus
Nucleolus
Glycocalyx*
Centrioles*
Fimbriae
Inclusion/
Granule
Cell wall
Outer
membrane
Cytoplasm
Endospore (not shown)
Glycocalyx
Bacterial
chromosome
or nucleoid
Pilus
Cell
(cytoplasmic)
membrane
Actin
cytoskeleton
Flagellum
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 3
Eukaryotic Organisms
5.2 Form and Function of the Eukaryotic
Cell: External Structures
Figure 5.2
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 4
Locomotion: Eukaryote Flagellum
Used for locomotion
Does not spin
Waves like an oar
Multi-protein complex
Microtubule core (9x2 + 2)
Dynein arms use ATP to slide the tubules which results in flexion.
Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display.
a: © Scientifica/RMF/Visuals Unlimited, Inc.; b: © RMF/FDF/Visuals Unlimited
Microtubules
Cilia- similar to flagella but some differences
Shorter
More numerous
Can also function as feeding and filtering structures
Locomotion Appendages: Cilia
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 5
The Glycocalyx
Most eukaryotic cells have this outermost boundary
Usually composed of polysaccharides
Appears as a network of fibers, a slime layer, or a capsule
Slime layer- loosely organized
Capsule– greater organization, makes phagocytosis more difficult
Glycocalyx
Functions
Protection
Adhesion
Reception of signals
The layer beneath the glycocalyx varies among eukaryotes
Fungi and most algae have a thick, rigid cell wall
Protozoa and animal cells do not have this cell wall
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 6
Eukaryote Capsule
Present in some pathogens
Polymeric sugars
Important in avoiding immune clearance
Similar to prokaryotes
(a)
Cell Wall
Rigid
Provide support and shape
Different chemically from prokaryotic cell walls
Fungi
Thick, inner layer of chitin or cellulose
Thin outer layer of mixed glycans
Algae
Varied in chemical composition
May contain cellulose, pectin
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 7
Cytoplasmic Membrane
Bilayer of phospholipids with protein molecules embedded
Also contain sterols
Gives stability
Especially important in cells without a cell wall
Selectively permeable
5.3 Internal Structures - The Nucleus
Double lipid bilayer
Most of the genetic material of the cell
Nucleolus (rRNA synthesis)
Nuclear pores allow traffic into and out of the nucleus
Note that the DNA is partitioned from the cytoplasm and ribosomes
Nuclear pore
Nucleolus
(b Nuclear
envelope
Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display.
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 8
Figure 5.6
Genetic Material
Multiple linear chromosomes are present
Haploid or diploid
DNA is condensed on proteins (histones)
Replicate using mitosis and/or meiosis
b: © Science VU/Visuals Unlimited
Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display.
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 9
Figure 5.7
Cell Cycle
Endoplasmic Reticulum Phospholipid bilayer
Smooth ER
Lipid metabolism
Detox reactions
Rough ER
Ribosomes docked
Protein synthesis
Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display.
(a)
(b)
(c)
RER membrane
Ribosome
Small subunit
Large subunit
Cistern
Polyribosomes
Cistern
Nuclear envelope
Nuclear pore
Protein being
synthesized
mRNA
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 10
Eukaryote Ribosome
Two subunits (40S and 60S)
Total size is 80S
Translate mRNA into proteins
Similar structure to prokaryotes but different shape
Antibiotic-resistant (selective toxicity)
Mitochondria
“Powerhouse”
Site of respiration
Bacterial endosymbiont
Double lipid bilayer
Own genetic material
Reproduce autonomously
Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display.
Inner membrane
Matrix
Cristae
(a) Outer membrane
(b)
70S ribosomes
DNA strand
Cristae
(darker lines)
Matrix
(lighter spaces)
b: © Donald Fawcett/Visuals Unlimited
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 11
Chloroplasts Found in plants
and algae
Site of photosynthesis
Bacterial endosymbiont
Double lipid bilayer
Own genetic material
Reproduce autonomously
Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display.
70S ribosomes
Granum Thylakoids
Stroma matrix
Chloroplast envelope
(double membrane)
DNA strand
Golgi Apparatus
Composed of a lipid bilayer
Protein trafficking centers
Import/Processing/ Export
“Stack of pancakes”
Vesicles bud off
Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display.
Cell membrane
Golgi
apparatus
Condensing
vesicles
Transitional
vesicles
Rough
endoplasmic
reticulum Nucleus
Ribosome
parts
Nucleolus
Secretion by exocytosis
Secretory vesicle
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 12
Cytoskeleton
Intracellular protein matrix
Regulate cell shape
Involved in motility
Actin
polymerized into chains
Microtubules (green)
made of tubulin
Intermediate filaments
Microfilaments
Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display.
(a)
Mitochondrion
Microtubule
(b)
Endoplasmic
reticulum
Intermediate
filaments
Actin
filaments
Plasma
membrane
b: © Albert Tousson/PhotoTake
Vacuoles
Lipid-enclosed space
Storage sites for water, food, enzymes, and waste
Vary greatly in size and function
Central vacuoles provide turgor pressure
Contractile vacuole eliminate water
Lysosomes contain digestive enzymes
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 13
5.4 The Kingdom of Fungi
Myceteae
Great variety and complexity
Approximately 100,000 species
Majority are unicellular or colonial
Hyphae
Some form a pseudohypha
The Fungi
Terrestrial, non-photosynthetic, and saprophytic
Single-celled forms are called yeast
Multicellular (Molds)
Hyphae form mycelium
Ergosterol in membrane
Chitin cell walls
Haploid and diploid cells occur
Sexual and asexual reproduction
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 14
Figure 5.17
Organization of Microscopic Fungi
Most grow in loose associations or colonies
Yeasts- soft, uniform texture and appearance
Filamentous fungal colonies- cottony, hairy, or velvety textures
Mycelium- the woven, intertwining mass of hyphae that makes up the body or colony of a mold
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 15
Mycelial Growth Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display.
(a) Reproductive Hyphae
Hypha
Germ tube
Rhizoids
Spore
Substrate
Spores
Germination (d)
Vegetative Hyphae
Surface
hyphae
Submerged
hyphae
d: © Dr. George L. Barron
(b)
(c)
Organization of Fungi- Hyphae
Unique organizational features of hyphae Septa- divide the hyphae in to segments (most fungi-
septate hyphae)
Nonseptate hyphae- one long, continuous cell
Functions of hyphae Vegetative hyphae (mycelia)- visible mass of growth
on the substrate surface; penetrates the substrate to digest and absorb nutrients
Reproductive (fertile) hyphae- from vegetative hyphae; responsible for the production of spores
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 16
Figure 5.16
Microscopic morphology of Yeast
Yeasts
Single-cell fungi
Budding
Blastospores
Useful yeasts
Saccharomyces
Pathogens
Cryptococcus
Candida
Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display.
(a)
Ribosomes
Mitochondrion
Nucleus
Nucleolus
Cell membrane
Golgi apparatus
Cell wall
Storage vacuole
Bud scar
(b)
(c)
Bud
Nucleus Bud scars
Pseudohypha
Bud
Endoplasmic
reticulum
Fungal (Yeast) Cell
b: © David M. Phillips/Visuals Unlimited
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 17
Reproductive Strategies and Spore
Formation
Most can propagate by growth of hyphae or fragmentation
Primary reproductive mode- the production of spores
Function of spores
Multiplication
Survival
Producing genetic variation
Dissemination
Large diversity in spores among the fungi
General grouping of spores- asexual and sexual
Why are sexual spores favorable?
The Roles of Fungi in Nature and
Industry
Nearly all fungi are free-living and don’t need a host
Human infection by pathogenic fungi usually occurs through accidental contact
Humans are generally resistant to fungal infection, except for two main types
Primary pathogens
Opportunistic pathogens
Mycoses vary in the way the agent enters the body and the degree of tissue involvement
Also involved in allergies, poisonings, agricultural damage
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 18
Benefits of
Fungi
Decomposing organic matter and returning essential minerals to the soil
Mycorrhizae increase the ability of plant roots to absorb water and nutrients
Production of
Antibiotics
Alcohol
Organic acids
Vitamins
Food flavorings
Fungal Infections
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 19
5.5 The Protists
Traditionally contains the algae and protozoa
Two major taxonomic categories
Subkingdom Algae
Subkingdom Protozoa
Algae: Photosynthetic Protists
Eukaryotic
Photosynthetic, free-living
Single-celled forms
Filamentous forms
Colonial forms
Classified by pigments
Cell walls vary in composition
Red tide
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 20
Classes of Algae
Phaeophyta - Brown: Macroscopic (kelp)
Rhodophyta - Red: Macroscopic (agar source)
Chlorophyta - Green: Macro- and Microscopic
Euglenophyta - Euglenoids: Motile and green
Dinophyta - Dinoflagellates: “Red Tide” Karenia brevis – Florida red tide
Prototheca: rare parasitic, non-photosynthetic algae.
Biology of the Protozoa
About 65,000 species
Most are harmless, free-living inhabitants of water and soil
Few are parasites
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 21
Protists
Eukaryotes
Single-cell
Free-living and pathogens
Grouped by locomotion
Cell wall absent
Two cell forms
Trophozoite
Cyst
Protozoan Form and Function
Most are single cells
Contain major eukaryotic organelles except chloroplasts
Cytoplasm usually divided Ectoplasm: clear outer layer involved in locomotion,
feeding, and protection
Endoplasm: granular inner region housing the nucleus, mitochondria, and food and contractile vacuoles
No cell wall- so some flexibility
Cell shape can remain constant or can change constantly (amoebas)
Size between 3 to 300 µm
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 22
Protist Life Cycle Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display.
Trophozoite
(active, feeding stage)
Trophozoite
is reactivated
Mature cyst
(dormant, resting stage)
Early cyst wall
formation
Cell rounds up,
loses motility
Cyst wall
breaks open
Life Cycle and Reproduction
Vary from simple to complex
Some exist only in trophozoite stage
Others alternate between trophozoite and cyst
Life cycle of a parasitic protozoan determines the mode of transmission to hosts
All reproduce by asexual methods
Sexual reproduction occurs during the life cycle of most protozoa
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 23
Classification of Selected Medically
Important Protozoa
Four groups
Based on:
Method of motility
Mode of reproduction
Stages in the lifecycle
Protozoa Styles of Locomotion
Some unusual species move by gliding or twisting
Pseudopods : Amoeboid motion
Can serve as feeding structures
Flagella : From one to several
Some attached along the length of the cell by the undulating membrane
Cilia: Mostly distributed over the entire surface of the cell
Form characteristic patterns
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 24
Move using flagella (Whip)
Complex life cycles
Many parasitic species
Trypanosoma cruzi
Giardia lamblia
Trichomonas vaginalis
Mastigophora
Flagellum Undulating membrane
a: © David M. Phillips/Visuals Unlimited;
Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display.
Sarcodina
Move using pseudopodia
Phagocytosis
Includes amoeba
Entamoeba histolytica
Naegleria fowleri
Nucleus
Pseudo pod
Water-
expelling
vacuole
Food
vacuole
(b)
Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display.
(b): © Stephen Durr
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 25
Ciliophora
Move using cilia “eyelashes”
Most are free living
Paramecium
Macronucleus and
Micronucleus
Conjugation
Balantinium coli
Cilia
Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display.
c: © BioMEDIA ASSOCIATES
Apicocomplexa (Sporozoa)
Non-motile protozoa
Obligate parasites
Apicomplexans
Plasmodium vivax
Toxoplasma gondii
Cytostome Nucleus Food vacuoles
d: © Yuuji Tsukii, Protist Information Server, http://protist.i.hosei.ac.jp/protist_menuE.html
Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display.
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 26
Important Protozoan Pathogens
5.6 Parasitic Helminths
Worms are not microorganisms
Multicellular organisms
Two main groups:
Aschelminthes or nematodes (round worms)
Platyhelminthes (flat worms)
Cestodes (tapeworms)
Tremetodes (flukes)
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 27
Flatworms
Phylum Platyhelminthes
Thin
Often segmented
Subdivisions
Cestodes (tapeworms)
Trematodes (flukes)
Parasitic Flatworms
A cestode A tremetode
1 cm
1 mm
Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display.
b: © Carol Geake/Animals Animals; d: © Arthur Siegel man/Visuals Unlimited
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 28
Roundworms
Phylum Aschelminthes
Aka nematodes
Elongate
Cylindrical
Unsegmented
Pathogenic Flagellates: Trypanosomes
Genus Trypanosoma
T. brucei causes sleeping sickness
T. cruzi causes Chagas disease
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 29
Figure 5.24
Infective Amoebas: Entamoeba
Amoebiasis caused by Entamoeba histolytica
Fourth most common protozoan infection in the world
Aka amoebic dysentery
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 30
Life Cycles and Reproduction
Fertilized egg (embryo), larval, and adult stages
In most, adults derive nutrients and reproduce sexually in a host’s body
Must complete the life cycle by transmitting an infective form to the body of another host
Larval development- intermediate (secondary) host
Adulthood and mating- definitive (final) host
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 31
A Helminth Cycle: The Pinworm
Person swallows microscopic eggs Picked up from another infected person by direct contact
Or by touching articles an infected person has touched
Eggs hatch in the intestine
Release larvae that mature in to adult worms (about 1 month)
Male and female worms mate
Female migrates out of the anus to deposit eggs Causes intense itchiness
Relieved by scratching
Scratching contaminates the fingers which transfer the eggs
Eggs spread to others or the original host reinfects him or herself
Typical Helminth Lifecycle
Pinworm
Worm eggs are shed
Fecal-oral route
Difficult to irradicate
Female Anus
Male Eggs
Mouth
Cuticle Mouth
Autoinoculation
Copulatory
spicule
Fertile
egg
Cross-
infection
Self-
infection
The Main Themes of Microbiology Microbiology: A Systems Approach
Chapter 1, pages 1 to 26 32
Distribution and Importance of Parasitic
Worms
About 50 species parasitize humans
Distributed in all areas of the world
Yearly estimate of worldwide infections- in the billions