FINAL PROGRAM, ABSTRACT & EXHIBIT GUIDE · Plant & Animal Genome XXIII Registration & Meeting Schedule . Registration - ATLAS FOYER . Friday January 9 12:00pm - 9:00pm . Saturday

P L A N T & A N I M A L G E N O M E X X I I I

A PLANT CO-ORGANIZERS Dave Clements, Johns Hopkins University, USA Catherine Feuillet, Bayer CropScience, USA J. Perry Gustafson, University of Missouri, (Retired ), USA Jerome P. Miksche, Emeritus Director, USDA, Plant Genome Program, USA Graham Moore, John Innes Centre, UK Susan R. Wessler, University of California, Riverside, USA Rod A. Wing, University of Arizona, USA

A ANIMAL CO-ORGANIZERS Ernie Bailey, University of Kentucky, USA Daniel Ciobanu, University of Nebraska, USA Kwan-Suk Kim, Chungbuk National University, South Korea Stephen White, USDA/ARS, USA

A ABSTRACT & WEBSITE COORDINATORS Victoria Carollo Blake, USDA/ARS/WRRC, USA David Grant, USDA/ARS/CICGR, USA Gerard Lazo, USDA/ARS/WRRC, USA A TRAVEL GRANTS COORDINATOR Douglas Bigwood, Diogenix, USA Tom Blake, Montana State University (Retired), USA A SPECIAL DUTY COORDINATORS Hans Cheng, USDA/ARS, USA Max Rothschild, Iowa State University, USA

F I N A L P R O G R A M , A B S T R A C T & E X H I B I T G U I D E

ORGANIZER

Scherago International

111 Town Square Place

Suite 1208

Jersey City, NJ 07310

Phone: (201) 653-4777

Fax: (201) 653-5705

Email: [email protected]

Website: www.intlpag.org

January 10-14, 2015

Town & Country Hotel

San Diego, CA

Organizing CommitteeChairman: Stephen R. Heller, NIST (USA)

Sponsors and SupportersA USDA, Agricultural Research Service

A USDA, National Agricultural Library

A USDA, National Institute of Food and Agriculture

A John Innes Centre

Cover artwork provided by Applied Biosystems. Originally developed for the company’s “Genetic Harvest” Agriculture Seminars, this image represents the importance of molecular genetic approaches in plant and animal research.

T H E I N T E R N AT I O N A L CO N F E R E N C E

O N T H E S TAT U S O F P L A N T & A N I M A L

G E N O M E R E S E A R C H

Table of Contents Registration and Meeting Schedule 2

Meeting Schedule Table 3

PAG Asia 2015 4

Plenary Talks Schedule 5

Computer Demos Schedule 6-8

Industry Workshops Schedule 9

Scientific Program: Saturday 10-38 Sunday 39-67 Monday 68-78 Tuesday 79-98 Wednesday 99-102

Future Dates 103

Corporate Sponsors 104

Acknowledgements 105

Travel Grant Awards 106-108

Exhibitor Descriptions 109-137

Abstracts Table of Contents 138-141

Abstracts: Workshops 142-204

Posters 205-301 Computer Demos 302-304

Author Index 305-343

Exhibit Hall Floorplan 344

Lower Level Poster Floorplan 345

Notes 346-347

Hotel Property Map 348

Mark Your Calendar For:

PAG Asia 2015 – July 13-15, 2015 - Singapore PAG XXIV – January 9-13, 2016 – San Diego

Plant & Animal Genome XXIII Registration & Meeting Schedule

Registration - ATLAS FOYER Friday January 9 12:00pm - 9:00pm Saturday January 10 7:00am - 8:00pm Sunday January 11 7:00am - 6:00pm Monday January 12 7:00am - 5:00pm Tuesday January 13 7:00am - 3:00pm Wednesday January 14 7:00am - 12:00pm

Plenary Session - ATLAS BALLROOM Sunday January 11 6:15pm - 7:00pm Monday January 12 8:15am - 10:00am Tuesday-Wednesday January 13-14 8:00am - 9:30am

Poster Access Hours – GRAND EXHIBIT HALL & LOWER LEVEL Saturday January 10 7:00am - 9:00pm Sunday January 11 3:00pm - 8:30pm Monday January 12 7:00am - 9:00pm Tuesday January 13 7:00am - 3:00pm Wednesday January 14 7:00am - 12:00pm ALL POSTERS MUST BE REMOVED BY 12:00PM WEDNESDAY, JANUARY 14. Speaker Ready Room – TERRACE SALON 2 Friday January 9 12:00pm - 8:00pm Saturday - Tuesday January 10-13 7:00am - 8:00pm Wednesday January 14 7:00am - 12:00pm

Poster Sessions - GRAND EXHIBIT HALL & LOWER LEVEL Monday (Even Numbers) January 12 10:00am - 11:30am Monday (Odd Numbers) January 12 3:00pm - 4:30pm Exhibit Hours - GRAND EXHIBIT HALL Sunday January 11 (Reception: 7:00-8:30) 3:00pm - 8:30pm Monday January 12 9:30am - 5:00pm Tuesday January 13 9:30am - 3:00pm

Computer Room - CALIFORNIA Friday January 9 12:00pm - 10:00pm Saturday - Tuesday January 10-13 6:00am - 10:00pm Wednesday January 14 6:00am - 3:00pm Computer Demonstrations: Computer system demonstrations will be conducted Sunday - Wednesday in the "computer room", located in the California Room, see Computer Demo schedule for times.

Welcome Reception - GRAND EXHIBIT HALL & LOWER LEVEL Sunday January 11 7:00pm - 8:30pm

Closing Banquet Dinner – GRAND EXHIBIT HALL Wednesday January 14 7:00pm - 12:00am

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Meeting Schedule Table

Friday January 9

Saturday January 10

Sunday January 11

Monday January 13

Tuesday January 13

Wednesday January 14

Poster Session Access

7:00-9:00

3:00-9:00

7:00-9:00

7:00-3:00

7:00-2:00

Registration (Atlas Foyer)

12:00-9:00

7:00-8:00

7:00-6:00

7:00-5:00

7:00-3:00

7:00-12:00

Continental Breakfast (Golden Ballroom)

7:00-8:00

7:00-8:00

7:00-8:00

7:00-8:00

7:00-8:00

Workshops

8:00-10:10

8:00-10:10

Plenary Lectures (Town & Country)

8:15-10:00 Pioneer DuPont



Exhibits

9:30-5:00

9:30-3:00

Closed

Coffee Break

9:30-10:30 Atlas Foyer


9:30-11:30 Exhibit Hall



Poster Session (Grand Exhibit Hall)

10:00-11:30 Even Numbers

Workshops

10:20-12:30

10:20-12:30

10:20-12:30

10:20-5:00

Computer Demos (California Room)

10:30-12:40

Lunch (Lion Fountain Courtyard & Grand Exhibit Hall)

12:30-1:30

12:30-1:30

12:00-12:50

12:30-1:30

12:30-1:30

Workshops

1:30-3:40

1:30-3:40

12:50-3:00

1:30-3:40

Computer Demos (California Room)

1:30-3:50

12:50-3:00

Exhibits

3:00-8:30 Reception: 7:00-8:30

Coffee Break





Poster Session (Grand Exhibit Hall)

3:00-4:30 Odd Numbers

Workshops

4:00-6:10

4:00-6:10

6:10-8:20

4:00-6:10

Plenary Lecture (Town & Country)


Welcome Reception (Grand Exhibit Hall)

7:00-8:30

Coffee Break

7:00-7:30

Conference Banquet (Grand Exhibit Hall)

7:00-12:00

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Plant & Animal Genome Conference ASIA Singapore, July 13-15, 2015 G r a n d C o p t h o r n e W a t e r f r o n t H o t e l , S i n g a p o r e

V IS ION OF PAG AS IA PACIF IC

In response to the expanding global population, worldwide

climate changes, and dramatic plant and animal genome

research occurring in Asia Pacific, the organizers of the

Plant and Animal Genome Conference are planning a

short version of PAG to be held in Singapore.

PAG AS IA MEET ING

PAG Asia will be a 3-day meeting, consisting of plenary talks,

workshops, a poster section, and tabletop exhibits.

CONTACT US

We welcome your thoughts regarding this event. Please

send any suggestions of particular speakers or workshops

of interest via email to [email protected]

For two decades the Plant and Animal Genome Conference (PAG) has been dedicated to the mission of fostering development of genomic analysis of agricultural products to sustain the world. PAG ASIA will allow us to further expand this mission and to bring the discussion to more areas of the globe.

- Stephen Heller, USDA Retired and Chair of PAG

111 Town Square Place, Suite 1208 Jersey City, NJ 07310, USAPhone: +1 201-653-4777Fax: +1 [email protected] www.intlpagasia.org

“ “

PROPOSED WORKSHOP TOP ICS

Abiotic StressAsian CattleBarleyBrassicaDihaploid Generation & Uses in BreedingFruitGenome Annotation Resources at the EBIIntegrative -omics and informaticsInternational Rice Informatics ConsortiumInternational Wheat Genome Sequencing (IWGSC)PoultryShrimpSwineTranslational Genomics for Agriculture

CO-CHAIRS

Laszlo Orban, PhDDirector of Reproductive Genomics,Strategic Research Program,Temasek Life Sciences Laboratory, SINGAPORE

Stephen Heller, PhDUSDA (Retired), and Chair of the Plant and Animal Genome Conference, USA

ORGANIZING COMMITTEE

Susan McCouch, PhDCornell University, USA

Graham Moore, PhDJohn Innes Centre, UK

Max Rothschild, PhDIowa State University, USA

Rajeev K. Varshney, PhDInternational Crops ResearchInstitutefor the Semi-Arid Tropics(ICRISAT), INDIA

Rod A. Wing, PhDUniversity of Arizona, USA

Qifa Zhang, PhDHuazhong Agricultural University, CHINA

ABSTRACT COORDINATORS

Victoria Carollo Blake, PhDUSDA/ARS/WRRC, USA

David Grant, PhDUSDA/ARS/CICGR, USA

Gerard Lazo, PhDUSDA/ARS/WRRC, USA

EARLYREGISTRATION

STANDARDREGISTRATION

Non-Profit $475 USDThrough May 4

$575 USDAfter May 4

Industry $900 USDThrough May 4

$1000 USDAfter May 4

Student $275 USDThrough May 4

$325 USDAfter May 4

MEDIA PARTNERS:

IN PARTNERSHIP WITH:

PLENARY SPEAKERS

• XiaoFeng Cao, CHINA• Jae Yong Han, KOREA• Evans Lagudah, AUSTRALIA• Matt Littlejohn, NEW ZEALAND• Rajeev K. Varshney, INDIA• Rod A. Wing, USA• Tae-Jin Yang, KOREA• Dabing Zhang, CHINA• Shuhong Zhao, CHINA

for mailing list signup and exhibiting and sponsorship opportunities, visit www.intlpagasia.org

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Plenary Talks Schedule Sponsored by: Pioneer DuPont

Sunday, January 11, 2015 6:15pm - 7:00pm - TOWN & COUNTRY BALLROOM

Philip Bourne, National Institutes of Health “NIH as a Digital Enterprise – Implications for PAG”

Monday, January 12, 2015 8:00am - 8:45am - TOWN & COUNTRY BALLROOM

Beth Shapiro, University of California Santa Cruz

“The evolutionary consequences of interspecies hybridization: insights from ancient and modern bear genomes”

8:45am - 9:30am - TOWN & COUNTRY BALLROOM Trey Ideker, UC San Diego

“Interpreting genome variants and mutations using a unified human genetic network”

Tuesday, January 13, 2015 8:00am - 8:45am - TOWN & COUNTRY BALLROOM

Xuemei Chen, University of California “Plant microRNAs: biogenesis, degradation, and modes of action”

8:45am - 9:30am - TOWN & COUNTRY BALLROOM Mike E Goddard, University of Melbourne

“The Evolution and Genetic Architecture of Complex Traits”

Wednesday, January 14, 2015 8:00am - 8:45am - TOWN & COUNTRY BALLROOM

Giles Oldroyd, John Innes Centre “Engineering Nitrogen-Fixing Symbiotic Associations in Cereals” 8:45am - 9:30am - TOWN & COUNTRY BALLROOM

Christina Warinner, University of Oklahoma “Reconstructing Our Ancient Microbial Self”

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Computer Demos Schedule

Saturday - January 10, 2015

1:30pm - 3:40pm Computer Demo 1 - CALIFORNIA Organizers: Dave Clements, Johns Hopkins University

Brian Smith-White, National Center for Biotechnology Information (NCBI/NLM/NIH)

1:30pm Gary Saunders, European Bioinformatics Institute (EMBL-EBI) "The European Variation Archive at EMBL-EBI" (C01)

1:50pm Nathan A Dunn, Berkeley Bioinformatics Open-source Projects "WebApollo 20: A Scalable, Distributed Sequence Annotation Editor" (C02)

2:10pm Jodi L Humann, Washington State University "GenSAS: A Web-Based Platform for Automated and Manual Curation

of Genomic Sequence" (C03) 2:30pm Kim D Pruitt, National Center for Biotechnology Information (NCBI/NLM/NIH)

"Sequence Viewer and Genome Workbench - Sequence Display and Analysis Tools" (C04)

2:50pm Emily Perry, European Bioinformatics Institute (EMBL-EBI) "Analysing SNP Consequences on Genes and Proteins with Ensembl's

Variant Effect Predictor" (C05) 3:10pm Hugues Roest Crollius, Ecole Normale Supérieure, Institute of Biology (IBENS)

"Genomicus: Fast and Intuitive Comparative Genomics in Plant and Animal Genome" (C06)

3:30pm Justin T Page, Brigham Young University "BamBam: Genome Sequence Analysis Tools for Biologists" (C07)

Monday - January 12, 2015

12:50pm - 3:00pm Computer Demo 2 - CALIFORNIA Organizers: Dave Clements, Johns Hopkins University


12:50pm Toby Hunt, Wellcome Trust Sanger Institute "New Tools for Manual Genome Annotation in Eukaryotes:

Zmap/Otterlace and Vega" (C08) 1:10pm Victoria Carollo Blake, USDA ARS WRRC

"The Triticeae Toolbox (T3): From the Ground Up" (C09)

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Computer Demos Schedule

1:30pm Carson M Andorf, USDA-ARS

"The Reinvention of MaizeGDB" (C10) 1:50pm Andrew D Farmer, National Center for Genome Resources

"Methods for Collecting, Integrating, and Displaying Complex Genetic Data, Using the Legume Information System and PeanutBase" (C11)

2:10pm Hidemasa Bono, Database Center for Life Science "Facilitating the Use of Next-Gen Sequence Data for Data-Driven

Biology" (C12) 2:30pm Sook Jung, Washington State University

"How to Use GDR, the Genome Database for Rosaceae" (C13) 2:45pm Jing Yu, Washington State University

"CottonGen: The Community Database for Cotton Genomics, Genetics and Breeding Research" (C14)

Tuesday - January 13, 2015

10:30am - 12:40pm Computer Demo 3 - CALIFORNIA Organizers: Dave Clements, Johns Hopkins University


10:30am Delphine Steinbach, INRA - URGI "GnpIS-Asso : A Generic Database for Managing and Exploiting Plant

Genetic Association Studies Results Using High Throughput Genotyping and Phenotyping Data" (C15)

10:45am Xinbin Dai, The Samuel Roberts Noble Foundation "HRGRN: A Graph Search-Empowered Integrative Database of

Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks" (C16)

11:00am Thomas Letellier, INRA - URGI "Wheat3BMine, a Data Warehouse Dedicated to Wheat Chromosome 3B" (C17)

11:15am Hans Vasquez-Gross, Department of Plant Sciences, University of California, Davis "Using the Wheat Tilling Database to Search Mutants of Interest" (C18)

11:30am Emily Grau, UC Davis "TreeGenes and CartograTree: Tools for Forest Tree Genomics" (C19)

11:45am Patrick Xuechun Zhao, The Samuel Roberts Noble Foundation "LegumeIP - an Integrative Platform to Study Gene Function and

Genome Evolution in Legumes: Year 3 Update" (C20)

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Computer Demos Schedule 12:00pm Brian Smith-White, National Center for Biotechnology Information

(NCBI/NLM/NIH) "National Center for Biotechnology Information Resources for Plant

Genomics" (C21) 12:15pm Nirav Merchant, iPlant Collaborative/University of Arizona

"Manage Complex Computations Using Clouds and Containers in iPlant Atmosphere" (C22)

12:30pm Jason R Miller, J Craig Venter Institute "Using the Arabidopsis Information Portal" (C23)

Wednesday - January 14, 2015

10:30am - 12:40pm Computer Demo 4 - CALIFORNIA Organizers: Dave Clements, Johns Hopkins University


10:30am Jorge A Duitama Castellanos, International Center for Tropical Agriculture (CIAT) "Bioinformatic Analysis of Genotype By Sequencing (GBS) Data with

NGSEP" (C24) 10:45am Michael T Lovci, University of California, San Diego

"Flotilla: An Open-Source Toolkit for Single-Cell RNA-Seq Data Analysis" (C25)

11:00am Ana Conesa, Centro Investigacion Principe Felipe "The STATegra NGS Experiment Management System" (C26)

11:15am Carrie L Ganote, Indiana University ""Roll" Your Own Genomics Cluster with Rocks and the XSEDE-

Compatible Basic Cluster" (C27) 11:30am Meng Huang, Washington State University

"BioGPU: A High Performance Computing Tool for Genome-Wide Association Studies" (C28)

11:45am Priya Ranjan, University of Tennessee, Knoxville "The DOE Systems Biology Knowledgebase (KBase): Progress Toward a

System for Inference and Modeling of Biological Function in Plants" (C29) 12:00pm Takako Mochizuki, Genome Informatics Laboratory, NIG, ROIS

"DNA Polymorphism Database from New-Generation Sequence Read Archive and Analytical Workflow" (C30)

8

Industry Workshop Schedule

Affymetrix Monday, Jan 12 12:50 pm - 3:00 pm Pacific Salon 3 BGI Monday, Jan 12 6:10 pm - 8:20 pm San Diego BioNano Genomics Tuesday, Jan 13 1:30 pm - 3:40 pm Sunrise DNAstar Monday, Jan 12 6:10 pm - 8:20 pm Royal Palm Salon 4,5,6 Envirologix Inc. Monday, Jan 12 6:10 pm - 8:20 pm Pacific Salon 1 Fluidigm Tuesday, Jan 13 1:30 pm - 3:40 pm Sunset GeneSeek Monday, Jan 12 12:50 pm - 3:00 pm Pacific Salon 2 IBM Tuesday, Jan 13 1:30 pm - 3:40 pm Golden West Illimina Tuesday, Jan 13 4:00 pm - 6:10 pm Golden West Kapa Biosystems Tuesday, Jan 13 1:30 pm - 3:40 pm Towne Keygene Monday, Jan 12 12:50 pm - 3:00 pm Royal Palm Salon 1,2,3 Kyazma Monday, Jan 12 12:50 pm - 3:00 pm Pacific Salon 4-5 LGC 1 Monday, Jan 12 6:10 pm - 8:20 pm Pacific Salon 2 LGC 2 Tuesday, Jan 13 1:30 pm - 3:40 pm Pacific Salon 2 Lucigen Tuesday, Jan 13 1:30 pm - 3:40 pm Pacific Salon 1 Maverix Biomics Monday, Jan 12 6:10 pm - 8:20 pm Royal Palm Salon 1,2,3 New England Biolabs Monday, Jan 12 12:50 pm - 3:00 pm Pacific Salon 1 NRGene Tuesday, Jan 13 10:30 am - 12:40 pm Pacific Salon 4-5 Pacific Bioscciences Tuesday, Jan 13 1:30 pm - 3:40 pm San Diego Plant Phenotyping Tuesday, Jan 13 4:00 pm - 6:10 pm Esquire Qiagen Tuesday, Jan 13 1:30 pm - 3:40 pm Royal Palm Salon 1,2,3 Roche Diagnostics Monday, Jan 12 12:50 pm - 3:00 pm Golden Ballroom Thermo Fisher Scientific (Formerly Life Technologies™)

Monday, Jan 12 12:50 pm - 3:00 pm Golden West

Ubiquitome Monday, Jan 12 6:10 pm - 8:20 pm Pacific Salon 3

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7:00am - 8:00am Continental Breakfast - GOLDEN BALLROOM

7:00am - 8:00pm Registration - ATLAS FOYER

8:00am - 10:10am The Analysis and Role of the Microbiome - SUNRISE Chair: Francesco Strozzi, Parco Tecnologico Padano

8:00am Introductory Remarks 8:10am C Titus Brown, Michigan State University

"How Well Can We Reconstruct Metagenome Content? Thoughts and Data on Metagenome Assembly" (W724)

8:40am Itai Sharon, University of California, Berkeley "Accurate, Multi-Kb Illumina Truseq Synthetic Reads Resolve Complex Microbial Populations and Detect Rare Microorganisms" (W725)

9:10am Mick Watson, The Roslin Institute and R(D)SVS, University of Edinburgh "The Microbial Proteome Associated with High Methane Emissions in Cattle Determined By Shotgun Metagenomic Sequencing" (W726)

9:40am Timothy PL Smith, USDA-ARS, US Meat Animal Research Center "Characterization of the Bovine Nasopharyngeal Microbiome in the Context of Respiratory Disease and Treatment" (W727)

8:00am - 10:10am Arthropod Genomics - ESQUIRE Organizer: Wayne Hunter, USDA Agricultural Research Service and Blake Bextine, University of Texas-Tyler

8:00am Welcoming Remarks 8:05am Gerard R Lazo, USDA Agricultural Research Service, WRRC

"Bacterial Pathogen Genomics: Liberibacters from Around the World" (W044)

8:20am Wayne Hunter, USDA Agricultural Research Service "Psyllid RNAi" (W045)

8:40am Lucy R Stewart, USDA-ARS "Identification of candidate virus response and vector competence genes in the virus-transmitting leafhopper, Graminella nigrifrons"

9:00am Blake Bextine, University of Texas-Tyler "Regulation of Viral Infections for Insect Pest Managment" (W046)

9:20am Jan E Leach, Colorado State University "The Phytobiome Initiative" (W048)

9:30am Susan Brown, Kansas State University, KSU Bioinformatics Center "The i5k Perspective" (W049)

9:40am Kim C Worley, Baylor College of Medicine "Progress on the I5K Pilot at the Baylor College of Medicine Human Genome Sequencing Center" (W047)

10:05am Discussion

10


8:00am - 10:10am CSSA: Translational Genomics - PACIFIC SALON 1 Organizer: Marilyn Warburton, USDA ARS Corn Host Plant Resistance Research Unit and Paxton Payton, USDA-ARS

8:00am Paul Gepts, University of California "Determinacy in Common Bean: Duplications, Redundancies, and Multiple Domestications" (W198)

8:20am Celeste Marie Falcon, University of Minnesota "Evaluating Genomic Selection in the First Two Cycles of a Winter Barley Breeding Program" (W199)

8:40am Mehul Bhakta, Horticultural Sciences Department "A Good Day to Flower: Environmental Dependent Genetic Control of Flowering Time in Common Bean" (W200)

9:00am Shelby L Ellison, University of Wisconsin-Madison "Orange Is the New Yellow: Cracking the Genetic Code Controlling Beta-Carotene Accumulation in Carrot" (W201)

9:20am Vikas Belamkar, Iowa State University "Mining Plant Collections Using Phenotyping and High-Throughput Sequencing for Accelerated Crop Improvement - a Case Study of the Native American Bean Apios americana" (W202)

9:40am Jianbing Yan, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University

"Genome Wide Association Study of Metabolites in Maize" (W203)

8:00am - 10:10am Ecological Genomics - ROYAL PALM SALON 1-2 Organizer: Katrina Dlugosch, University of Arizona and Nolan Kane, University of Colorado

8:00am Joseph Jenkins, University of Southampton "Biochar Alters the Soil Microbiome: Results from Amplicon Surveys of Three European Field Sites"

8:20am Jacqueline Batley, University of Western Australia "Patterns of Gene Loss in Population Genomic Data - Identifying Disposable Genes"

8:40am Brittany Barker, University of Arizona "Ecological Genomics of Native and Invading Yellow Starthistle and Its Biocontrol Insect"

9:00am Nolan Kane, University of Colorado "Genomics of Adaptation and Diversificaiton in Cannabis"

9:20am Vikram Chhatre, University of Vermont "Understanding Climate Adaptation through Genome-Wide Patterns of Differentiation and Local Selection in Populus balsamifera How Important Are Peripheral Populations?"

11


8:00am - 10:10am Evolution of Genome Size - GOLDEN WEST Organizer: Daniel G Peterson, Mississippi State University

8:00am David A Ray, Texas Tech University "Small RNA-Transposable Elements Interactions in Animal Genome Evolution" (W242)

8:25am Andrew H Paterson, Plant Genome Mapping Laboratory, University of Georgia "Concerted Evolution of Subgenomes in Polyploids" (W243)

8:50am Joshua A Udall, Brigham Young University "TBD" (W244)

9:15am Christopher A Saski, Clemson University Genomics Institute "TBD" (W245)

9:40am Xiu-Qing Li, Agriculture and Agri-Food Canada "Examining the Coevolution of Genome Sizes, GC contents, and Gene Direction" (W246)

8:00am - 10:10am Forage, Feedstocks & Turf - PACIFIC SALON 4-5 (2ND FLOOR) Organizers: German Spangenberg, Biosciences Research Division, DPI Reed E Barker, Grass Genomic Testing, Inc

8:00am E Charles Brummer, University of California, Davis "GBS-Based Yield Selection in Alfalfa: Now We're Getting SomewhereAren't We?" (W261)

8:20am Hans D Daetwyler, Department of Environment and Primary Industries "Genomic Selection in Perennial Ryegrass: Results from Empirical and Simulation Studies" (W262)

8:40am Carolyn Young, The Samuel Roberts Noble Foundation "Understanding Tall Fescue Endophytes through Genotypic and Chemotypic Diversity" (W263)

9:00am Qingyi Yu, Texas A&M AgriLife Research "Sequence-Tagged High-Density Genetic Maps of Zoysia japonica Provide New Insights into Chloridoideae Genome Evolution" (W264)

9:20am Roland Kölliker, Agroscope Institute for Sustainability Sciences "Exploration and Exploitation of Disease Resistance in Ryegrass" (W265)

9:40am Toshihiko Yamada, Hokkaido University "The Role of Fructan for Cold Stress Tolerance in Grasses" (W266)

12


8:00am - 10:10am International Wheat Genome Sequencing Consortium (IWGSC) - TOWN AND COUNTRY

Organizers: Kellye Eversole, IWGSC and Jan Dvorak, University of California 8:00am Jan Dvorak, Department of Plant Sciences, University of California

"BAC-Based Sequencing of the Aegilops tauschii Genome" (W406)

8:20am Sukhwinder Singh, CIMMYT "A High Density GBS Map of Bread Wheat and Its Application for Genetic Improvement of the Crop" (W407)

8:40am Jorge Dubcovsky, University of California Davis "Exome Sequencing of Wheat Mutant Populations Opens a New Era for Wheat Functional Genetics" (W408)

9:10am Fiona Doohan, University College Dublin "Use of the Wheat Genome to Expedite the Identification of Disease Resistance Genes" (W409)

9:30am Yang Yen, South Dakota State University "Susceptibility to Fusarium Head Blight By Wheat Is Regulated By Silencing RNAs of Pathogen Origin" (W410)

9:50am Ricardo H Ramirez-Gonzalez, The Genome Analysis Centre "RNA-Seq Bulked Segregant Analysis Enables the Identification of High-Resolution Genetic Markers for Breeding in Hexaploid Wheat" (W411)

8:00am - 10:10am Legumes - ROYAL PALM SALON 5-6 Organizers: Maria J Monteros, The Samuel Roberts Noble Foundation and Jamie A O'Rourke, USDA-ARS

8:00am Mitchell R Lucas, University of California "Introgression of a Rare Haplotype from Southeastern Africa to Breed Cowpeas with Larger Seeds" (W435)

8:20am Sally Mackenzie, Center for Plant Science Innovation, University of Nebraska, "The MSH1 System for Inducing Epigenetic Variation in Legume Systems" (W436)

8:40am Lars Kamphuis, University of Western Australia, Institute of Agriculture & CSIRO Agriculture Flagship

"The Narrow-Leafed Lupin Genome Assembly, Transcriptome Sequencing of Different Tissue Types and Generation of Gene-Based Molecular Markers" (W437)

9:00am Marc Libault, University of Oklahoma "Role of Membrane Rafts during Legume Nodulation" (W438)

9:20am Damien Formey, Centro de Ciencias Genomicas, Universidad Nacional Autonoma de Mexico

"Genome-Wide Identification of the Phaseolus vulgaris sRNAome using Small RNA and Degradome Sequencing" (W439)

9:40am Venu (Kal) Kalavacharla, Delaware State University "Integrated Epigenomic and Transcriptomic Profiling of the Resistance Response of Common Bean (Phaseolus vulgaris) to Bean Rust (Uromyces appendiculatus)" (W440)

13


8:00am - 10:10am Speciation Genomics - TOWNE Organizer: Richard Buggs, Queen Mary University of London

8:00am Christophe Plomion, INRA "Sequencing of the Pedunculate Oak Genome and Contribution of Gene Expression and Single Nucleotide Polymorphisms to Speciation in the European White Oak Species Complex" (W733)

8:20am Annaliese S Mason, University of Queensland "The Fate of Chromosomes and Alleles in Brassica Allohexaploids" (W734)

8:40am Christian Lexer, University of Fribourg "Speciation Genomics in Plants: Divergence Continuum and Beyond" (W735)

9:00am Jenny Boughman, Michigan State University "TBA" (W736)

8:00am - 10:10am Systems Biology and Ontologies - PACIFIC SALON 2 Organizers: Pankaj Jaiswal, Oregon State University, Laurel Cooper, Oregon State University and Sushma Naithani, Oregon State University

8:00am Molly Megraw, Oregon State University "Transcription Start Site Sequencing Strongly Informs Gene Regulatory Network Inference" (W781)

8:00am Welcoming Remarks 8:20am Aravind Venkatesan, Institut de biologie Computationnelle

"Facilitating Efficient Knowledge Management and Discovery in the Agronomic Sciences" (W778)

8:40am Sarah Lennon, New Phytologist "New Phytologist and the Plant Ontology: Working Together to Enhance Journal Content" (W779)

9:00am Michael Kramer, Department of Medicine, University of California, San Diego "Inferring Gene Ontologies from Molecular Networks" (W780)

9:20am Aaron Fait, Ben-Gurion University "Metabolomics and Analysis of Quantitative Traits: State of the Art, Challenges and Future Perspectives" (W782)

9:40am Jer-Young Lin, University of California "The Interplay of DNA Methylation, Histone Modification and Gene Activity in Soybean Seed Development" (W783)

10:05am Concluding Remarks

14


8:00am - 12:40pm Cattle/Swine - SAN DIEGO Organizers: Wansheng Liu, Penn State University and Gary A Rohrer, USDA, ARS, USMARC

8:00am Parag Chitnis, National Institute of Food and Agriculture "NIFA’s Role in Catalyzing Transformative Research in Animal Genomics"

8:15am Jeremy F Taylor, Division of Animal Sciences, University of Missouri "Identification of Causal Variants Using Next Generation Sequencing Data" (W134)

8:55am Tad S Sonstegard, Animal Genomics and Improvement Laboratory, USDA-ARS "Discovery of Convergent Adaptations that Alleviate Heat Stress in Taurine Cattle" (W135)

9:35am Miguel Perez-Enciso, Centre for Research in Agrigenomics (CRAG) and ICREA "Diachrony and Synchrony When Studying Pig Genomes" (W136)

10:15am Break 10:40am Naomi Duijvesteijn, Topigs Norsvin

"GWAS for Direct and Indirect Effect on Androstenone" (W137)

11:20am James M Reecy, Department of Animal Science, Iowa State University "Development and Utilization of Bioinformatic Tools in Livestock Genomics" (W138)

12:00pm Sabarinath Subramaniam, Bio5 Institute, University of Arizona "Management and Visualization of Ianimal Quantitative Data Using iPlant and EPIC-CoGe" (W139)

15


8:00am - 12:40pm Fruit/Nuts - PACIFIC SALON 3 Organizer: Herman Silva, Lab Gen Func & Bioinfo - Fac Ciencias Agro - U de Chile

8:00am Herman Silva, Lab Gen Func & Bioinfo - Fac Ciencias Agro - U de Chile Welcome Remarks

8:02am Dorrie Main, Washington State University "GDR: A Community Database for Rosaceae Genomics, Genetics and Breeding Research" (W286)

8:21am Kevin M Folta, University of Florida ""Coupling Gene to Function in Strawberry (Fragaria spp)" (W287)

8:40am Béatrice Denoyes, INRA UMR 1332 - FRANCE "Combined Genetic, Genomic and Physiological Approaches to Characterize Flowering in Fragaria" (W288)

8:59am Maria A Moya-León, Institute of Biological Sciences - University of Talca "Molecular Events Taking Place during Ripening of Fragaria chiloensis Fruit" (W289)

9:18am Ignazio Verde, Consiglio per la Ricerca e la sperimentazione in Agricoltura - Fruit Tree Research Center

"The Peach v20 Release: An Improved Genome Sequence for Bridging the Gap Between Genomics and Breeding in Prunus" (W290)

9:37am Break

10:07am Hanny Elsadr, University of Guelph "Refining the Genomic Region Containing a Major Locus Controlling Fruit Maturity in Peach" (W291)

10:26am Fabrizio Costa, Fondazione E Mach "Apple Breeding and Postharvest in the Post-Genomic Era" (W292)

10:45am Basilio Carrasco, Pontificia Universidad Católica de Chile "Development of a Saturated Linkage Map in Prunus salicina L Using Genotyping by Sequencing (GBS)" (W293)

11:04am Elena Hilario, The New Zealand Institute for Plant & Food Research Limited "Parallel Sequencing of Barcoded BAC Clones to Assist and Validate Kiwifruit Genome Assemblies" (W294)

11:23am Pedro J Martínez-García, Department of Plant Sciences University of California "The Genome Sequence of Walnut (Juglans regia L) cv “Chandler” (W295)

11:42am Ryutaro Tao, Graduate School of Agriculture, Kyoto University "Sexuality of Persimmons" (W296)

12:01pm José Quero-Garcia, INRA, UMR 1332 Biologie du Fruit et Pathologie "Genomic Studies on a Highly Complex Trait in Sweet Cherry: Tolerance to Rain-Induced Fruit Cracking" (W297)

12:20pm Amy Iezzoni, Michigan State University "RosBREED: Combining Disease Resistance with Horticultural Quality in New Rosaceous Cultivars" (W298)

16


8:00am - 12:40pm Pine Genome Reference Sequence - PACIFIC SALON 6-7 (2ND FLOOR) Organizer: Pat McGuire, University of California Chair: David Neale, Dept Plant Sciences University of California

8:00am Welcoming Remarks 8:15am Kristian Stevens, University of California, Davis

"A Reference Genome Sequence for Sugar Pine" (W508)

8:45am Jill Wegrzyn, Department of Ecology and Evolutionary Biology - University of Connecticut

"Sugar Pine Annotation" (W509)

9:15am Aleksey Zimin, Institute for Physical Science and Technology, University of Maryland "Loblolly Pine Genome v20" (W510)

9:45am Break 10:15am Dorrie Main, Washington State University

"GenSAS" (W511)

10:45am Andrew J Eckert, Virginia Commonwealth University "Genomics and Reciprocal Illumination: The Study of Local Adaptation Across an Understudied Clade of Pines" (W512)

11:15am Sally N Aitken, University of British Columbia "The Alluring Simplicity and Complex Reality of Adaptation to Climate in Lodgepole Pine" (W513)

17


8:00am - 6:10pm Aquaculture - ROYAL PALM SALON 3-4 Organizer: Roger L Vallejo, USDA-ARS-NCCCWA

8:00am Welcome Remarks 8:05am Geoff Waldbieser, USDA - Agricultural Research Service

"A Genome Sequence Assembly for Channel Catfish, Ictalurus punctatus"

8:25am Agnieszka Stadnik, Simon Fraser University "Yeast Two-Hybridization Analyses of Atlantic Salmon sdY Interactions"

8:45am Alexandre R Caetano, Embrapa Recursos Genéticos e Biotecnologia "De Novo Genome Assembly of the South American Freshwater Fish Tambaqui (Colossoma macropomum)"

9:05am Ailu Chen, The Fish Molecular Genetics and Biotechnology Laboratory "Allele-Specific Expression in Interspecific Catfish Hybrids"

9:25am Rune Andreassen, Oslo and Akershus University College of Applied Sciences "Tissue and Disease Specific Expression of miRNA Genes in Atlantic Salmon (Salmo salar)"

9:45am Carlos M Rodriguez Lopez, University of Adelaide "Can Epigenetic Regulation of Sex Ratios Explain Natural Variation in Self-Fertilization Rates?"

10:05am Break 10:20am Theodorus M Meuwissen, Norwegian University of Life Sciences

"The Application of Genomic Selection in Aquaculture"

11:10am Weiwei You, Xiamen University "New Insights in the Differences Between Triploid and Diploid Fujian Oyster By Integrated Gene Expression Profiling and Proteomic Analyses"

11:30am Orly Eshel, Volcani Research Center "Detection of Genes and microRNA Involved in Sex Determination in Nile Tilapia (Oreochromis niloticus)"

11:50am Cristian Araneda, Universidad de Chile, Depto de Produccion Animal "Contrasting Patterns of Neutral and Adaptive Genetic Variation of Chilean Blue Mussel (Mytilus chilensis) Due to Local Adaptation and Aquaculture"

12:10pm Lunch Break 1:20pm Ross D Houston, The Roslin Institute and R(D)SVS, University of Edinburgh

"Application of Genomics to Selective Breeding of Atlantic Salmon" (W037)

2:00pm Bam D Paneru, Middle Tennessee State University "RNA-Seq Identifies SNPs Associated with Muscle Yield and Quality in Rainbow Trout"

2:20pm Xin Geng, Auburn University "GWAS Analyses in Catfish Reveal the Presence of Functional Hubs of Related Genes within Major QTLs for Columnaris Disease Resistance"

2:40pm Roger L Vallejo, USDA-ARS-NCCCWA "Accuracy of Genomic Prediction for BCWD Resistance in Rainbow trout Using 24K RAD-SNP and 49K SNP and Bayes B/C and Single-Step GBLUP Methods"

18


3:00pm PM Break 3:20pm Jim Parsons, Troutlodge, Inc

"Selective Breeding in Commercial North American Rainbow Trout Populations" (W038)

4:00pm Catherine Purcell, Southwest Fisheries Science Center, National Marine Fisheries Service

"Stepping Toward Sustainable Aquaculture: Genomic Resource Development to Help Guide Broodstock Selection and Culture Practices for the California Yellowtail, Seriola lalandi"

4:20pm Hao Ma, West Virginia University "Identification of Mitochondrial microRNAs Related to Egg Deterioration Caused By Post-Ovulatory Aging in Rainbow Trout"

4:40pm Yniv Palti, USDA-ARS-NCCCWA "The Development and Characterization of a 57K SNP Chip for Rainbow Trout"

5:00pm James M Reecy, Department of Animal Science, Iowa State University "NRSP-8 Bioinformatics Coordinator"

5:10pm John Liu, Auburn University "Business Meeting"

8:00am - 6:10pm Poultry 1 - SUNSET Organizers: Douglas D Rhoads, University of Arkansas and Fiona McCarthy, University of Arizona

8:00am Douglas D Rhoads, University of Arkansas

"Opening Remarks and Introductions" (W581)

8:20am Huanmin Zhang, USDA ARS Avian Disease & Oncology Laboratory "Vaccine Induced Differential Expressions of Mirnas at Cytolytic Stage in Chickens Resistant or Susceptible to Marek's Disease" (W582)

8:40am Hans Cheng, USDA, ARS, ADOL "Association of Specific Microbes with Marek’s Disease Progression" (W583)

9:00am Mary Delany, University of California "MDV Vaccine Serotype and Chicken Host Genome Interactions" (W584)

9:20am Fionna McCarthy, University of Arizona "Towards Understanding Gene Expression in Red Jungle Fowl" (W585)

9:40am Susan J Lamont, Iowa State University "Genomics of Response to Heat Stress in Chickens" (W586)

10:00am Break 10:20am Huaijun Zhou, University of California

"Genetic Architecture of Heat Stress and Disease Resistance to Newcastle Disease Virus in Chickens" (W588)

10:40am Ignacy Misztal, University of Georgia "Influence of Selection on Genomic Accuracies of Males and Females Using Male, Female or Joint Genotypes" (W589)

19


11:00am Samuel E Aggrey, University of Georgia

"Association of the Transsulfuration Pathway in Feather Follicle and Subcutaneous Tissue Development in Broiler Chickens" (W590)

11:20am Behnam Abasht, Department of Animal Science, University of Delaware "RNA-Seq Analysis of Wooden Breast Disease: Characterizing a Novel Myopathy in Commercial Chickens through Differential Gene Expression" (W591)

11:40am C Titus Brown, Michigan State University "Adventures in Improving the Chicken Reference Genome and Transcriptome" (W592)

12:00pm Douglas D Rhoads, University of Arkansas "Lunch Break" (W593)

1:20pm Eric A Wong, Virginia Tech "Transcriptome Profiling of the Chicken Yolk Sac during Late Embryogenesis" (W594)

1:40pm Kent M Reed, University of Minnesota "Differential Transcriptome Response to Aflatoxin in the Turkey" (W595)

2:00pm Doris Bachtrog, University of California Berkeley "Sex Chromosomes Demonstrate Complex Evolutionary Trajectories Across Bird Taxa" (W596)

2:40pm Break 3:20pm David P Froman, Oregon State University

"Identification of Quantitative Trait Loci Associated with Low Sperm Mobility in the Chicken" (W598)

3:40pm Carl J Schmidt, University of Delaware "TBD" (W599)

4:00pm Deepali Vasoya, Roslin Institute, University of Edinburgh "Viral/Host Gene Expression Profiles in Lymphoid and Feather Follicle Epithelial (FFE) Cells Infected with Marek’s Disease Virus (MDV)”" (W600)

4:20pm Marcia M Miller, Beckman Research Institute, City of Hope "Specialized Antigen Presentation By Yf MHC Class I-like Molecules in Poultry Health" (W601)

4:40pm James M Reecy, Department of Animal Science, Iowa State University "Update on NRSP8 Bioinformatics Activities" (W602)

4:55pm Douglas D Rhoads, University of Arkansas "Grad Student 3 Minute Talks" (W603)

9:30am - 10:30am Coffee Break - ATLAS FOYER

20


10:30am - 12:40pm Brassicas - ROYAL PALM SALON 5-6 Organizers: Ian Bancroft, Department of Biology, University of York and J Chris Pires, University of Missouri

10:30am Hiroyasu Kitashiba, Graduate School of Agricultural Science, Tohoku University

"Assignment of Draft Sequences of the Radish (Raphanus sativus L) Genome to a High-Density Linkage Map" (W081)

10:50am Kathleen Greenham, Dartmouth College "Analysis of Circadian Transcriptional Networks in Brassica Rapa Elucidates Temporally Regulated Abiotic Stress Modules" (W082)

11:10am Yong Pyo Lim, Chungnam National University "Genomic-Assisted Marker Development of Brassica Crop for Agronomic Improvement" (W083)

11:30am Upendra Kumar Devisetty, University of California "Development and Application of Genomic Resources in Brassica rapa" (W084)

11:50am Boulos Chalhoub, URGV-INRA "Homeologous Exchange Crosstalks between Coresident Subgenomes of the Post-Neolithic Brassica napus Allopolyploid" (W085)

12:10pm Xiaoming Wu, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences "Genome-Wide Association Study of the Complex Traits in Amphidiploid Rapeseed (Brassica napus L)" (W086)

10:30am - 12:40pm Buffalo genome - ROYAL PALM SALON 1-2 Organizer: John Williams, Fondazione Parco Tecnologico Padano

10:30am John Williams, Fondazione Parco Tecnologico Padano "Status of the Buffalo Genome Project” (W087)

10:50am Derek Bickhart, Animal Genomics and Improvement Laboratory, USDA-ARS "Comparison of CNVs in Buffalo with Other Species" (W088)

11:10am Ezequiel Luis Nicolazzi, Fondazione Parco Tecnologico Padano "Using the 90K Buffalo SNP Array" (W089)

11:30am Paolo Ajmone Marsan, Inst of Zootechnics, Università Cattolica del S Cuore "Diversity and Origins of Domestic Buffalo" (W090)

11:50am Sara Albarella, Department of Veterinary Medicine and Animal Production, University Federico II - Naples - Italy

"Selection and Congenital Disease in Mediterranean Italian River Buffalo" (W091)

12:10pm Jeremy F Taylor, Division of Animal Sciences, University of Missouri "Using Sequence Data to Localise Developmental Mutations" (W092)

21


10:30am - 12:40pm DNA Subway: Genomics, DNA Barcoding, and RNA-Seq Made Easy for the Undergraduate Classroom - CALIFORNIA Organizer: Dave Micklos, iPlant Collaborative, DNA Learning Center

10:30am Dave Micklos, DNA Learning Center

"Simplifying Genome Annotation and Examples of Large-Scale Projects in DNA Barcoding (Red and Blue Lines)" (W231)

11:00am James Burnette, University of California, Riverside "Transposable Elements, Gene Discovery, and DNA Barcoding (Yellow and Blue Lines)" (W232)

11:30am Irina Makarevitch, Hamline University "Bringing Authentic Genomics Research into the Classroom: Analysis of Maize Stress Response (Green Line)" (W233)

12:00pm Judy A Brusslan, California State University, Long Beach "Large Dataset Analysis for Undergraduates: Discovery Environment, RNA-Seq and Leaf Senescence in Arabidopsis thaliana (Green Line)" (W234)

10:30am - 12:40pm Engineering NUE - PACIFIC SALON 4-5 (2ND FLOOR) Organizers: David A Lightfoot, Southern Illinois University and Ashok Shrawat, Monsanto

10:30am Margaret Simons, The Pennsylvania State University

"Assessing Nitrogen Metabolism Using Genome-Scale Models in Maize" (W235)

10:50am Sharon L Doty, University of Washington "Increasing Biomass Production with Reduced Inputs in Non-Legume Crops Using N-Fixing Endophytes of Poplar" (W236)

11:10am Adel Zayed, Monsanto Company "Nitrogen Utilization and Remobilization in Arabidopsis Under Nitrogen Depletion" (W237)

11:30am Anne-Sophie Bouchet, INRA IGEPP "Deciphering the Genetic Control of Yield and Yield Components of Winter Oilseed Rape (Brassica napus L) Grown Under Nitrogen Constraints with Combined Linkage and Association Analyses" (W238)

11:50am Christian Hermans, Université Libre de Bruxelles "Nitrogen Influence on Lateral Root Development of Brassicaceae Species" (W239)

22


10:30am - 12:40pm Functional Genomics of C4 and CAM photosynthesis - TOWNE Organizers: Thomas P Brutnell, Donald Danforth Plant Science Center and John C Cushman, University of Nevada, Reno

10:30am Xinguang Zhu, CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes

for Biological Sciences, Chinese Academy of Sciences "Evolution of C4 Photosynthesis: The Role of Low CO2 Environment" (W305)

10:50am Andreas PM Weber, Heinrich Heine Universität Düsseldorf "Metabolic Transport Functions in C4 Photosynthesis" (W306)

11:10am Thomas P Brutnell, Donald Danforth Plant Science Center "A Comparative Genomics Approach to Understanding C4 Photosynthetic Differentiation in the Grasses" (W307)

11:30am Jerry Jenkins, DOE Joint Genome Institute "Genome Assembly of the Obligate Crassulacean Acid Metabolism (CAM) Species Kalanchoe laxiflora" (W308)

11:50am Paul E Abraham, BioEnergy Science Center, Oak Ridge National Laboratory "Proteomic Studies in Monocot and Eudicot Crassulacean Acid Metabolism (CAM) Species" (W309)

12:10pm Won Cheol Yim, Department of Biochemistry and Molecular Biology, University of Nevada, Reno

"Transcriptome and Genome Assemblies of the Common Ice Plant, a Halophytic, Facultative Crassulacean Acid Metabolism (CAM) Species" (W310)

10:30am - 12:40pm Genomics of Genebanks - PACIFIC SALON 1 Organizers: Clare Coyne, Washington State University and Chris Richards, USDA ARS National Center for Genetics Resources

10:30am Christopher M Richards, USDA-ARS

"Overview of the Workshop" (W354)

10:35am Noelle A Barkley, USDA-ARS, PGRCU "The Complex Tale of the High Oleic Acid Trait in Peanut (Arachis hypogaea L)" (W355)

11:05am Junli Zhang, University of California Davis "A Genome-Wide Association Study of Resistance to Stripe Rust (Puccinia striiformis f sp tritici) in a Worldwide Collection” (W356)

11:35am Eric J von Wettberg, Florida International University "Genomics of Wild Cicer of Turkey" (W357)

12:05pm Peter Wenzl, Global Crop Diversity Trust "Diversity Seek (DivSeek): Towards a Concerted Effort to Harness the Genetic Potential of the World’s Genebanks"

23


10:30am - 12:40pm Grasslands (Lolium Genome Initiative) - ESQUIRE Organizers: Iain Donnison, Aberystwyth University and Reed E Barker, Grass Genomic Testing, Inc

10:30am Michael Casler, USDA-ARS

"Genetic Improvement of Switchgrass: The Brave New World of Genomic Selection" (W389)

10:50am Leif Skot, IBERS "Machine Learning for Genomic Prediction in Lolium perenne" (W390)

11:10am Tom Ruttink, ILVO-Plant Sciences Unit-Growth and Development "Probing Genome Diversity in Natural and Breeding Populations of Lolium perenne" (W391)

11:30am Adrian Czaban, Aarhus University "Comparative Genome Analysis of Lolium-Festuca Complex Species" (W392)

11:50am Dario Fè, Molecular Biology and Genetics, Aarhus University "Genomic Prediction in a Breeding Program of Perennial Ryegrass" (W393)

12:10pm Manfred Klaas, Teagasc Crops Environment and Land Use Programme "Uncovering the Water Stress Response of Reed Canary Grass (Phalaris arundinacea) from Differential Expression of the Reference Transcriptome" (W394)

10:30am - 12:40pm Triticeae 1 - GOLDEN BALLROOM Organizers: Mark E Sorrells, Cornell University , Wolfgang Spielmeyer, CSIRO Plant Industry and Nils Stein, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)

10:30am Nestor Kippes, University of California Davis

"Positional Cloning of the Wheat Vernalization Gene VRN-D4 Reveals the Origin of Spring Growth Habit in Ancient Hexaploid Wheats from India" (W810)

10:50am Chao Li, National Institute of Agrobiological Sciences "Identification of Cer-Zv, a Gene Responsible for Cutin Formation in the Barley Leaf Cuticle" (W811)

11:10am Ahmad Mohammad I Alqudah, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)

"Genetic Analysis of Pre-Anthesis Phase Duration in Spring Barley (Hordeum vulgare L)" (W812)

11:30am Carine Rizzolatti, Syngenta "Molecular Characterization of the Cytoplasmic Male Sterility System Underlying the Breeding and Production of HyvidoTM Hybrids in Barley" (W813)

11:50am Colin Hiebert, Agriculture and Agri-Food Canada "Mapping Stem Rust Resistance on Chromosome 3BL in Thatcher That Interacts with Lr34" (W814)

12:10pm Delphine Fleury, ACPFG, University of Adelaide "Genetic Dissection of Mechanisms Underlying Drought Tolerance in Wheat" (W815)

24


10:30am - 12:40pm Managing Crop Phenotype Data - TOWN AND COUNTRY Organizers: David E Matthews, USDA-ARS, Cornell University and Jean-Luc Jannink, USDA-ARS

10:30am Marko Karkkainen, International Rice Research Institute

"Breeding4Rice: Breeding Information Management System in a Process Organization" (W441)

10:50am Clay Birkett, USDA-ARS "Application Programming Interface (API) for Plant Breeding Data and Software Tools" (W442)

11:10am Grzegorz Uszynski, Diversity Arrays Technology Pty Ltd (DArT PL) "The KDDArT Knowledge Discovery System" (W443)

11:30am Graham McLaren, Generation Challenge Programme "Managing Phenotypic Data through the IBP's Breeding Management System" (W444)

11:50am Cyril Pommier, INRA - URGI "Phenotypic Data Exchange and Processing Using ISA-Tab Standard: transPLANT Project Use Case with GnpISEphesis and Bii" (W445)

12:10pm Yaniv Semel, Phenome Networks "Crop Data in Unity"

10:30am - 12:40pm Mutation Screening - GOLDEN WEST Organizers: Guenter Kahl, University of Frankfurt am Main, Frankfurt and Abdelhafid Bendahmane, INRA

10:30am Stig U Andersen, Aarhus University

"The Legume Non-Transgenic LORE1 Mutant Collection" (W446)

10:50am Anand Patel, Bioinformatics and Systems Biology Program, Moores Cancer Center, Dept Computer Science, UCSD

"Single Molecule Sequencing of Somatic Structural Variations" (W447)

11:10am Silvio Salvi, DipSA - University of Bologna "A Barley Root Mutants Collection for Fast Forward Genetics" (W448)

11:30am Khalid Meksem, Department of Plant Soil and Agricultural Systems, SIUC "A Soybean Cyst Nematode Resistance Gene Points to a New Mechanism of Plant Resistance to Pathogens" (W449)

11:50am Magdy Mahfouz, Biological and Environmental Sciences and Engineering Division "Viral-Mediated Genome Editing and Regulation in Plants Using CRISPR/Cas System" (W450)

12:10pm Michiel van Eijk, KeyGene "High Throughput Sequence-Based Screening with Keypoint Mutation Breeding" (W451)

25


10:30am - 12:40pm Plant Genome Engineering - SUNRISE Organizers: Dan Voytas, University of Minnesota and Robert M Stupar, University of Minnesota

12:00am Dan Voytas, University of Minnesota

"Strategies for the Targeted Modification of Plant Genomes" (W537)

10:30am Caixia Gao, Institute of Genetics and Developmental Biology, CAS "Developing Genome Editing Technologies for Crop Improvement" (W538)

10:50am Holger Puchta, Karlsruhe Institute of Technology "The CRISPR/Cas System can be used as Nuclease for in planta Gene Targeting and as Paired Nickases for Directed Mutagenesis in Arabidopsis Resulting in Heritable Progeny" (W539)

11:10am Feng Zhang, Cellectis plant sciences "Highly Efficient Genome Editing in Crops" (W540)

11:30am Sandeep Kumar, Dow AgroSciences "A Modular Gene Targeting System for Sequential Transgene Stacking in Plants" (W541)

12:30pm - 1:30pm Lunch (Vouchers Provided) - LION FOUNTAIN COURTYARD

1:30pm - 3:40pm Allele Mining - PACIFIC SALON 2 Organizer: Angela M Baldo, USDA ARS DBNRRC

1:30pm Fred E Gouker, Cornell University

"Dissection of Genotypic and Phenotypic Variation in Shrub Willow (Salix purpurea)" (W008)

1:51pm Anu Chitikineni, ICRISAT "A First Generation Hapmap of Chickpea for Mining Superior Alleles for Crop Improvement" (W009)

2:12pm Georgia C Eizenga, USDA-ARS Dale Bumpers National Rice Research Center "The Secrets of Cold Tolerance at the Seedling Stage and Heading in Rice As Revealed By Association Mapping" (W010)

2:33pm Xueyan Wang, University of Arkansas Rice Research and Extension Center "Association Studies Unravel a Link Between Yield Components and Disease Resistance of Rice" (W011)

2:54pm Katie Hyma, Genomic Diversity Facility, Cornell University "HetMappS: Heterozygous Mapping Strategy for High Resolution Genotyping-by-Sequencing Markers" (W012)

3:15pm Elena Hilario, The New Zealand Institute for Plant & Food Research Limited "Random Tagging GBS in Kiwifruit" (W013)

26


1:30pm - 3:40pm Triticeae 2 - GOLDEN BALLROOM Organizers: Nils Stein, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) , Mark E Sorrells, Cornell University and Wolfgang Spielmeyer, CSIRO Plant Industry

1:30pm Robbie Waugh, The James Hutton Institute

"Genomic Diversity, Adaptation and Selection in Barley" (W816)

1:50pm Alan H Schulman, LUKE & University of Helsinki "A 43 Gb Genome Map of the Barley Genome As a Tool for Assembly" (W817)

2:10pm Brian J Steffenson, University of Minnesota "Call of the Wild: Exploiting Hordeum vulgare spp spontaneum for Barley Improvement" (W818)

2:30pm Laura Rossini, Universty of Milan - DiSAA "The Photoperiod Response Gene Ppd-H1 Affects Leaf Size and Phyllochron in Barley" (W819)

2:50pm Thomas Wicker, University of Zurich "Analysis of Highly Repetitive BAC Clones Reveals Rapid Evolution of highly variable Gene Clusters in Triticeae" (W820)

3:10pm Moritz Joest, Institute of Biochemistry and Biology, University of Potsdam "Broad Leaves, Narrow Leaves, or No Leaves at All - Genetic Dissection of Barley Leaf Growth" (W821)

1:30pm - 3:40pm Citrus Genome - PACIFIC SALON 6-7 (2ND FLOOR) Organizer: Fred G Gmitter, University of Florida, IFAS-CREC

1:30pm Javier Terol, Centro de Genomica, IVIA

"An RNA-Seq Based Reference Transcriptome for Citrus" (W140)

1:50pm Marco A Takita, Centro de Citricultura Sylvio Moreira, IAC "Exploiting the Citrus Genome Towards Understanding Genetic Traits Related to Fruit Quality and Disease Resistance" (W141)

2:10pm Sook Jung, Washington State University "Citrus Genome DB Updates" (W142)

2:30pm Tokurou Shimizu, NARO Institute of Fruit Tree Science "Verifying the Mandarin Breeding: Lessons from Parentage Analysis of Citrus Varieties" (W143)

2:50pm Manuel Talon, Centro de Genomica, IVIA "Comparative Analysis of the Chloroplast Genome of the Genus Citrus" (W144)

27


1:30pm - 3:40pm Cool Season Legumes - PACIFIC SALON 1 Organizer: Rebecca McGee, Washington State University

1:30pm Weidong Chen, USDA-ARS Washington State University

"Fungal Phytotoxins and Ascochyta Blights of Cool Season Food Legumes" (W186)

1:50pm William L Holdsworth, Cornell University "Genotyping by Sequencing Reveals the Genetic Diversity of the USDA Pisum Diversity Collection" (W187)

2:10pm Kirstin Bett, University of Saskatchewan "Len Gen: The International Lentil Genome Sequencing Project" (W188)

2:30pm Mohammed-Amin Madoui, CEA "The International Pea Genome Sequencing Project: Sequencing and Assembly Progresses Updates" (W189)

2:50pm R Varma Penmetsa, University of California Davis "Back To The Future: Prospecting Wild Crop Relatives For Crop Improvement Of Chickpea" (W190)

3:10pm Rachit K Saxena, ICRISAT "Comprehensive Genome Sequencing Analysis of 292 Cajanus Accessions" (W191)

1:30pm - 3:40pm Genomic Selection and Genome-Wide Association Studies - TOWN AND COUNTRY Organizers: Jianming Yu, Iowa State University and Dorian J Garrick, Iowa State University

1:30pm Welcome Remarks 1:35pm Shizhong Xu, University of California

"Predicting Yield of Hybrid Rice Using Omics Data" (W349)

2:00pm Jose Fernando Garcia, Sao Paulo State University / UNESP "Advances on Bos indicus (Nellore) Genomics: Integrating Genomic Selection and GWAS Information" (W350)

2:25pm Tim Beissinger, University of California Davis "Selection Mapping: A Powerful Tool for Population Improvement" (W351)

2:45pm Jose Crossa, CIMMYT "New Developments in Plant Genomic Prediction Models" (W352)

3:10pm Ken Dodds, Invermay Agricultural Centre, AgResearch Ltd "Genomic Selection in New Zealand Sheep Using a Mixed-breed Training Set" (W353)

3:35pm Concluding Remarks

28


1:30pm - 3:40pm Maize - GOLDEN WEST Organizers: Patrick S Schnable, Department of Agronomy, Iowa State University and Jeffrey L Bennetzen, University of Georgia

1:30pm Patrick S Schnable, Department of Agronomy, Iowa State University

Welcome Remarks

1:40pm Nathan M Springer, University of Minnesota "Maize is not Arabidopsis"

2:10pm James C Schnable, University of Nebraska-Lincoln "The Real Genes of Maize: Marrowing the Target Space for Genetic and Genomic Studies"

2:40pm Andrea L Eveland, Donald Danforth Plant Science Center "Regulatory Networks Controlling Inflorescence Architecture Traits in Maize"

3:10pm Michael Scanlon, Cornell University "The Maize Ligule: How to Draw a Line on a Leaf"

1:30pm - 3:40pm Plant Interactions with Pests and Pathogens - SUNRISE Organizer: Christie Williams, USDA-ARS at Purdue University

1:30pm Benjamin F Matthews, USDA-ARS Soybean Genomics Lab "Designing Disease Resistant Plants" (W542)

1:50pm Jorge Dubcovsky, University of California Davis "Yr36 Confers Partial Resistance to Wheat Stripe Rust By a Novel Mechanism" (W543)

2:10pm Jacqueline Batley, University of Western Australia "Blackleg Resistance Gene Identification in Brassica napus: A Pan Genome Approach" (W544)

2:30pm Madan K Bhattacharyya, Iowa State University "Folic Acid Plays a Critical Role in Nonhost Resistance" (W545)

2:50pm Chan Ho Park, The Ohio State University "APIP10 Is a Novel E3 Ligase That Functionally Connects the Fungal Effector AvrPiz-t to Its NLR Receptor Piz-t in Rice" (W546)

3:10pm Roger Wise, USDA-ARS, Iowa State University "Broadly Conserved Fungal Effector BEC1019 Suppresses Host Cell Death and Enhances Virulence of Powdery Mildew in Barley (Hordeum vulgare L)" (W547)

29


1:30pm - 3:40pm Somatic Genome - PACIFIC SALON 4-5 (2ND FLOOR) Organizer: Xiu-Qing Li, Agriculture and Agri-Food Canada

1:30pm Anne B Britt, University of California

"Cell-Type-Specific Responses to DNA Damage" (W678)

1:55pm Linda Hanley-Bowdoin, NC State University "A Spatiotemporal Analysis of Plant DNA Replication in Developing Root Tips" (W679)

2:20pm Isabelle M Henry, Plant Biology and Genome Center, UC Davis "Strategies for Mutation Discovery and Characterization for Plant Functional Genomics" (W680)

2:45pm Stephanie A Bryant, University of Kentucky "Molecular Correlates of Programmed DNA Elimination" (W681)

3:10pm Xiu-Qing Li, Agriculture and Agri-Food Canada "Evolution of RNA Polyadenylation Sites" (W682)

1:30pm - 3:40pm Sugar Beet - TOWNE Organizer: Imad Eujayl, USDA-ARS, Northwest Irrigation and Soils Res Lab

1:30pm Chiara Broccanello, DAFNAE, Università degli Studi di Padova

"Association Between SNP183 and Bolting Tendency in Sugar Beet" (W742)

1:50pm Kazunori Taguchi, Hokkaido Agricultural Research Center "Molecular Dissection and Marker Assisted Selection to Cercospora Leaf Spot in Sugar Beet" (W743)

2:10pm Subhashini Srinivasan, Institute of Bioinformatics and Applied Biotechnology "A Comparative Genomic Study of the C3 Sugar Beet and the C4 Edible Grain Amaranth" (W744)

2:30pm Imad Eujayl, USDA-ARS, Northwest Irrigation and Soils Res Lab "Gene Expression Profiling of Resistance and Susceptibility to Beet Curly Top Virus in Sugarbeet" (W745)

2:50pm Belinda Townsend, Rothamsted Research "Storage Root Developmental Milestones Resolved Using Complementary -Omics Approaches" (W746)

3:10pm Glenda Willems, SESVanderHave Belgium "Towards a Sugar Beet Reference Genome Using Optical Mapping" (W747)

30


1:30pm - 3:40pm Computer Demo 1 - CALIFORNIA Organizers: Dave Clements, Johns Hopkins University and Brian Smith-White, National Center for Biotechnology Information (NCBI/NLM/NIH)

1:30pm Gary Saunders, European Bioinformatics Institute (EMBL-EBI)

"The European Variation Archive at EMBL-EBI" (C01)

1:50pm Nathan A Dunn, Berkeley Bioinformatics Open-source Projects "WebApollo 20: A Scalable, Distributed Sequence Annotation Editor" (C02)

2:10pm Jodi L Humann, Washington State University "GenSAS: A Web-Based Platform for Automated and Manual Curation of Genomic Sequence" (C03)

2:30pm Kim D Pruitt, National Center for Biotechnology Information (NCBI/NLM/NIH) "Sequence Viewer and Genome Workbench - Sequence Display and Analysis Tools" (C04)

2:50pm Emily Perry, European Bioinformatics Institute (EMBL-EBI) "Analysing SNP Consequences on Genes and Proteins with Ensembl's Variant Effect Predictor" (C05)

3:10pm Hugues Roest Crollius, Ecole Normale Supérieure, Institute of Biology (IBENS) "Genomicus: Fast and Intuitive Comparative Genomics in Plant and Animal Genome" (C06)

3:30pm Justin T Page, Brigham Young University "BamBam: Genome Sequence Analysis Tools for Biologists" (C07)

1:30pm - 3:40pm Plant Molecular Breeding - PACIFIC SALON 3 Organizer: Jinguo Hu, USDA ARS Chair: Yunbi Xu, CIMMYT/CAAS Co-Chair: Zhi-Kang Li, Institute of Crop Sciences, CAAS, Beijing

1:30pm Yunbi Xu, CIMMYT/CAAS Welcome Remarks

1:35pm Zhi-Kang Li, Institute of Crop Sciences, CAAS, Beijing "The Post-Genomics Era Rice Breeding: Perspectives and Practices" (W711)

1:55pm Susanne Dreisigacker, CIMMYT "Progress and Perspectives in CIMMYT Wheat Molecular Breeding" (W712)

2:15pm Jianbing Yan, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University

"Genome Wide Association Study in Maize" (W713)

2:35pm Nicole Bachleda, Institute of Plant Breeding, Genetics, and Genomics, University of Georgia "Identifying FATB1a Deletion That Causes Reduced Palmitic Acid Content in Soybean N87-2122-4 to Develop a Diagnostic Marker for a High Throughput Marker-Assisted Selection" (W714)

2:55pm Jauhar Ali, PBGB, International Rice Research Institute "Green Super Rice Breeding Technology" (W715)

3:15pm Manish Roorkiwal, ICRISAT "Can Genomic Selection Help Chickpea Breeding to Develop Superior Lines with Higher Yield Under Drought Stress?" (W716)

3:35pm Zhi-Kang Li, Institute of Crop Sciences, CAAS, Beijing "Closing Remarks" (W717)

31


1:30pm - 6:10pm Cattle/Sheep/Goat 1 - SAN DIEGO Organizer: Wansheng Liu, Department of Animal Science, Penn State University

1:30pm Brian Dalrymple, CSIRO Agriculture Flagship "Analysis of the Sheep Genome, with a Focus on the Evolution and Function of the Rumen and Implications for Methane Production by Ruminants" (W116)

1:50pm Chad Dechow, The Pennsylvania State University "Genome Wide Methylation Patterns in Holstein Leukocytes" (W117)

2:10pm Gwenola Tosser-Klopp, INRA "Update on the International Goat Genome Consortium Projects " (W118)

2:30pm Christopher A Bidwell, Purdue University "Muscle Hypertrophy and Polar Overdominance in Callipyge Sheep" (W119)

2:50pm Break 3:20pm Kim C Worley, Baylor College of Medicine

"Improving the Reference Genomes for the Sheep and the Cow" (W120)

3:40pm Christopher M Seabury, Texas A&M University "New Perspectives from Two Large NIFA Funded Grants: An Overview of GWAS Results" (W121)

4:00pm George E Liu, Animal Genomics and Improvement Laboratory, ARS-USDA "Whole-Genome Sequencing Reveals the Diversity and Population-Genetic Properties of Cattle CNVs" (W122)

4:20pm NRSP-8 Station Reports

1:30pm - 6:10pm Equine 1 - ROYAL PALM SALON 5-6 Organizers: Scott V Dindot, Texas A & M University and Theodore S Kalbfleisch, University of Louisville

1:30pm Scott V Dindot, Texas A&M University

Welcome Remarks

1:35pm Ludovic Orlando, Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen

"Prehistoric genomes reveal the genetic foundation and cost of horse domestication"

2:15pm Terje Raudsepp, Texas A&M University "Sequencing, De Novo Assembly and Functional Analysis of the Male Specific Region of the Horse Y Chromosom"

2:35pm Elizabeth A Staiger, Cornell University "Genome wide associations of temperament variation in the Tennessee Walking Horse"

2:55pm Felipe Avila, Department of Veterinary Population Medicine, University of Minnesota "Genomic Signatures of Selection in the American Quarter Horse"

3:15pm Scott V Dindot, Texas A&M University "Break"

3:25pm Danika Bannasch, University of California Davis "SERPINB11 Mutation Associated with Novel Hoof Specific Phenotype in Connemara Ponies"

3:45pm Sharmila Ghosh, Texas A&M University "Involvement of CNVs in Equine Cryptorchidism"

32


4:05pm Carrie J Finno, University of California Davis

"CYP7A1 is Significantly Upregulated in Spinal Cord from Horses Affected with Equine Neuroaxonal Dystrophy (NAD)"

4:25pm Lauren Ashley Bright, Department of Clinical Sciences "The recurrent airway obstruction restricted lung transcriptome identifies molecular signatures of airway hyperresponsiveness and neutrophillic inflammation"

4:45pm Raffaella Teixeira, University of Minnesota "Skeletal Muscle Gene Expression Profile in Type 1 Polysaccharide Storage Myopathy"

5:05pm Rebecca L Tallmadge, Department of Clinical Sciences "Assessing neonatal responses to vaccination at the protein and gene level: Ig and more Ig"

5:25pm Scott V Dindot, Texas A&M University "Discussion and Station Reports"

1:30pm - 6:10pm Swine - ROYAL PALM SALON 1-2 Organizers: Gary A Rohrer, USDA, ARS, USMARC and Cathy Ernst, Department of Animal Science, Michigan State University

1:30pm Luca Fontanesi, Department of Agricultural and Food Sciences, University of Bologna "Genomics Meets Metabolomics: Developing a Systems Biology Approach to Understand the Genetic Mechanisms Affecting Complex Traits in Pigs" (W761)

1:55pm Alex Clop, Centre for Research in Agricultural Genomics (CRAG) "Identification of damaging mutations in porcine taste receptor and appetite-reward genes by genome capture coupled with high throughput sequencing" (W762)

2:20pm Toby Hunt, Wellcome Trust Sanger Institute "Comparative Analysis of the Gene Sets of Mammalian Sex Chromosomes" (W763)

2:45pm Dicussion of Coordinators Funds 3:30pm Break 4:00pm Zhihua Jiang, Washington State University

"Whole Transcriptome Target Sequencing: A Tail Counting Method" (W764)

4:15pm Dan Nonneman, USDA, ARS, USMARC "Research on Gilt First Estrus and Pubertal Development at USMARC" (W765)

4:30pm Joan K Lunney, APDL, BARC, ARS, USDA "Translational Genomics of Porcine Reproductive and Respiratory Syndrome (PRRS)" (W766)

4:45pm Daniel Ciobanu, University of Nebraska "Analysis of the Host Genetics Influence on PCV2 Susceptibility" (W767)

5:00pm Randall S Prather, University of Missouri "CRISPR/Cas9-Mediated Genetic Engineering: Is CD163 an Entry Mediator for PRRSv Infection?" (W768)

5:15pm Catherine W Ernst, Department of Animal Science, Michigan State University "Evidence of RNA Editing in Pig Longissimus Dorsi Muscle" (W769)

5:30pm Christopher K Tuggle, Iowa State University "Characterizing the Iowa State University Severe Combined Immune Deficient (SCID) Pig" (W770)

5:45pm Election of officers and other business

33


3:00pm - 4:00pm Coffee Break - ATLAS FOYER

4:00pm - 6:10pm Analysis of Complex Genomes - TOWN AND COUNTRY Organizers: Hongbin Zhang, Texas A&M University, Boulos Chalhoub, URGV-INRA and David Stelly, Texas A&M University

4:00pm Hana Simkova, Institute of Experimental Botany "BioNano Genome Map of a Wheat Chromosome Arm: A Tool to Support Sequence Assembly in a Complex Genome" (W014)

4:20pm Armel Salmon, University of Rennes 1 - UMR CNRS 6553 "The Challenges of Genomics in Polyploid Spartina Species: How to Deal with Hybrid Genomes and High Redundancy?" (W015)

4:40pm Yang Zhang, Texas A&M University "The Molecular Mechanisms of Plant Polyploidization Revealed By Systems Analysis of the Genomes and Transcriptomes of Wheat, Cotton and Related Species" (W016)

5:00pm Cheng-Cang Charles Wu, Intact Genomics, Inc "Fungal Artificial Chromosome (FAC): A Novel Technology to Translate the Whole Genome Sequence Information into the Secondary Metabolome in Filamentous Fungi" (W017)

5:20pm Philipp Emanuel Bayer, University of Queensland "Assessing and Validating the Amphidiploid Genome of Brassica napus using Genotyping by Sequencing" (W018)

5:40pm Stephane Rombauts, VIB Department of Plant Systems Biology, Ghent University "A Whole Genome Sorting-Whole Genome Shotgun (WGS2) Approach for Sequencing the Allotetraploid Durum Wheat Genome" (W019)

4:00pm - 6:10pm Bioenergy Grass Genomics - PACIFIC SALON 2 Organizers: Kerrie Farrar, Aberystwyth University and Kankshita Swaminathan, University of Illinois Urbana-Champaign

4:00pm Stephen P Moose, University of Illinois Urbana-Champaign "Update on Assembly and Functionality of the Miscanthus Genome Sequence" (W056)

4:20pm Maurice Bosch, Aberystwyth University "Constructing a Comprehensive Picture of the Miscanthus Cell Wall to Advance Its Deconstruction" (W057)

4:40pm Sarah Purdy, Aberystwyth University "The carbohydrate metabolic profile can be used as a biomarker of productivity in Miscanthus" (W058)

5:20pm Laura Bartley, University of Oklahoma "Genomics and Genetics of Switchgrass Cell Wall Quality" (W059)

5:40pm David M Braun, University of Missouri "Functional Genomics of Sugar Content in Sweet Sorghum Stems" (W060)

6:00pm Daniel S Rokhsar, DOE Joint Genome Institute "Comparative Genomics of Bioenergy Grasses" (W061)

34


4:00pm - 6:10pm Climate Change and ICRCGC 1 - GOLDEN BALLROOM Organizer: Chittaranjan Kole, Bidhan Chandra Agricultural University

4:00pm Rajeev K Varshney, ICRISAT "Translational Genomics for Developing Climate-Change Ready Chickpeas" (W145)

4:20pm Rishu Sharma, Bidhan Chandra Agricultural University "Developing Disease Resistant Crop Varieties in the Changing Scenario of Global Warming and Climate Change" (W146)

4:40pm Wayne Hunter, USDA Agricultural Research Service "Developing Insect Resistant Crop Varieties to Combat New Insects and New Biotypes" (W147)

5:00pm David A Lightfoot, Southern Illinois University "Developing Crop Varieties with Improved Nutrient-Use Efficiency" (W148)

5:20pm Timothy Porch, USDA-ARS Tropical Agriculture Research Station "Advances in the Breeding and Genetics of Heat Tolerance to Alleviate the Effects of Climate Change, with a Focus on Common Bean" (W149)

5:40pm Kiyosumi Hori, National Institute of Agrobiological Sciences "Uncovering Major and Minor QTLs Generating Natural Variation in Heading Date Among Asian Rice Cultivars" (W150)

6:00pm Robert Henry, University of Queensland QAAFI "Fostering Global Collaboration to Combat Climate Change through Networking of Existing Crop-Based Consortia" (W151)

4:00pm - 6:10pm Next Generation Genome Annotation and Analysis - TOWNE Organizer: Barry Moore, USTAR Center for Genetic Discovery

4:00pm Shin-Han Shiu, Michigan Stat University "Nuances in Plant Genome Annotation: Those Duplicated and Dead Genes" (W462)

4:30pm Joshua Puzey, College of William and Mary "Transposon Density Affects Homeolog Specific Gene Expression in Allopolyploid Monkeyflower (Mimulus)" (W463)

5:00pm Daniel D Ence, Eccles Institute of Human Genetics, University of Utah “Transposable Element Islands Facilitate Adaptation to Novel Environments in an Invasive Species" (W464)

5:30pm Ingo Braasch, University of Oregon "The Spotted Gar Provides Connectivity Among Vertebrate Genomes and Insights into Evolution By Genome Duplication in Fish" (W465)

35


4:00pm - 6:10pm Non-Seed Plants - SUNRISE Organizer: Stefan A Rensing, University of Marburg

4:00pm Koichi Hori, Department of Biological Sciences, Tokyo Institute of Technology

"Klebsormidium flaccidum Genome Reveals Genome Evolution for Plant Terrestrial Adaptation" (W466)

4:20pm Tomoaki Nishiyama, Kanazawa University "The Chara braunii Genome" (W467)

4:40pm Jim Haseloff, University of Cambridge "The Marchantia Genome Project" (W468)

5:00pm Dave Weston, Oak Ridge National Laboratory "The Sphagnum Genome Project" (W469)

5:20pm Stuart McDaniel, University of Florida "The Ceratodon Genome Project" (W470)

5:40pm Daniel Lang, University of Freiburg, Plant Biotechnology "The Physcomitrella patens Flagship Genome Revisited Based on Pseudochromosomes" (W471)

4:00pm - 6:10pm Oats - PACIFIC SALON 6-7 (2ND FLOOR) Organizers: Rick Jellen, Brigham Young University and Nicholas A Tinker, Agriculture and Agri-Food Canada

4:00am Gabriele Gusmini, PepsiCo

"Oat Global: Uniting the Oat World at OatGlobalorg" (W476)

4:20pm Clare Saied, Cornell University, Dept of Plant Breeding and Genetics "Oat Global and T3-Oat: Relational Data for Oat Genotypes and Phenotypes" (W477)

4:40pm Jessica Schlueter, University of North Carolina at Charlotte "Ode to an Oat: Theme and Variations on a Map" (W478)

5:00pm Melissa C Fogarty, Brigham Young University "Characterization of Hemicellulose and Starch Biosynthesis Genes in Avena" (W479)

5:20pm Sergio Lucretti, ENEA - Italian Agency for New Technologies "Progress in Oat FISHIS and Chromosome Specific Sequencing" (W480)

5:40pm Nicholas A Tinker, Agriculture and Agri-Food Canada "Local GBS Haplotypes in Hexaploid Oat: How and Why?" (W481)

36


4:00pm - 6:10pm Population and Conservation Genomics - PACIFIC SALON 3 Organizer: Om P Rajora, University of New Brunswick

4:00pm Loren H Rieseberg, University of British Columbia

"Sexual Selection and Rates of Molecular Evolution in Flowering Plants" (W572)

4:15pm Kai N Stölting, University of Fribourg "Genomics of Population Divergence and Species Cohesion in an Ecologically Important Species Complex" (W573)

4:30pm Rebecca N Johnson, Australian Museum Research Institute "The Koala Genome Consortium - the Utilization of de novo Genome and Transcriptome Sequencing for Applied Conservation Genomics of an Iconic Australian Marsupial" (W574)

4:45pm Kirk E Lohmueller, University of California Los Angeles "Population Bottlenecks Led to the Accumulation of Deleterious Variants in Domestic and Wild Canids" (W575)

5:00pm Mark A Phillips, University of Calirfornia, Irvine "Genome-Wide Analysis of Long-Term Evolutionary Domestication in Drosophila melanogaster" (W576)

5:15pm Benjamin Hecht, Columbia River Inter-Tribal Fish Commission "Environmental Adaptation in Chinook Salmon (Oncorhynchus tshawytscha) throughout their Native Geographic Range" (W577)

5:30pm Loretta C Johnson, Kansas state university "Genetic Differentiation, Transcriptome Variation, and Local Adaptation of Dominant Prairie Grass Androspogon gerardii along the Climate Gradient of the US Midwest: Implications for Climate Change and Restoration" (W578)

5:45pm Millie Burrell, Texas A&M University "Exploring Origins, Invasion History and Genetic Diversity of Imperata cylindrica (L) P Beauv (Cogongrass) using Genotyping by Sequencing" (W579)

6:00pm Berthold Heinze, Austrian Federal Research Centre for Forests (BFW) "Higher Non-Synonymous Substitution Rates in Disease Resistance, Wood Synthesis and Stress-Responsive Genes in Clonal Varieties of Woody Biomass Species" (W580)

4:00pm - 6:10pm New Approaches for Developing Disease Resistance in Cereals - PACIFIC SALON 1 Organizers: Sarah Davidson Evanega, Cornell University, Jan E Leach, Colorado State University and Hei Leung, International Rice Research Institute

4:00pm Jin-Long Qiu, Institute of Microbiology, Chinese Academy of Sciences "Editing the Wheat Genome for Disease Resistance" (W457)

4:20pm Diana Garnica, College of Agricultural & Marine Sciences "Rust Proteomics: Tools to Understand Effector Molecules" (W458)

4:40pm Diane Saunders, The Genome Analysis Centre "Developing new tools for interrogating cereal invaders" (W459)

5:00pm Anne Osbourn, John Innes Institute "Moving Forward: Metabolic Engineering for Disease Resistance" (W460)

5:20pm Hei Leung, International Rice Research Institute "Allele Mining and Enhanced Genetic Recombination for Stress Resistant Crops" (W461)

37


4:00pm - 6:10pm Small RNA - GOLDEN WEST Organizers: Blake C Meyers, University of Delaware and Pamela J Green, University of Delaware

4:00pm Dong-Hoon Jeong, Hallym University

"Genome-Wide Analysis of microRNAs Associated with Flower Development in Rice" (W666)

4:20pm Alexandre Webster, California Institute of Technology "Distinct Recruitment Mechanisms for Aub and Ago3 to Nuage Lead to Functional Compartmentalization of the pIRNA Pathway in Drosophila" (W667)

4:40pm Guiliang Tang, Michigan Technological University "Inactivating microRNAs By Short Tandem Target Mimics and Silencing Coding Genes By Artificial microRNAs and Their Applications" (W668)

5:00pm Changchun Xiao, The Scripps Research Institution "MicroRNA Control of Immunity and Cancer" (W669)

5:20pm Sachin Teotia, Michigan Technological University "Targeting microRNAs for Destruction in Crop Plants By Short Tandem Target Mimic (STTM)"

5:40pm Kerri Gilbert, Donald Danforth Plant Science Center "Small RNA-Based Antiviral Defense in the Phytopathogenic Fungus Colletotrichum higginsianum" (W670)

6:00pm Shou-Wei Ding, University of California, Riverside "Virus-Activated siRNAs (vasiRNAs) - A Novel Class of Arabidopsis Endogenous siRNAs Induced by Virus Infection" (W671)

4:00pm - 6:10pm Genome Management and Analysis with CoGe - CALIFORNIA Organizer: Eric Lyons, University of Arizona | iPlant Collaborative Co-chairs: Haibao Tang, J Craig Venter Institute and Eric Lyons, University of Arizona | iPlant Collaborative

4:00pm Haibao Tang, J Craig Venter Institute

"Genome Analysis with CoGe" (W340)

5:30pm - 8:30pm Canadian Genome Centres Reception - TIKI PAVILION TERRACE

OH CANADA! Please join Team Canada as we invite you to network with some of the best plant, animal and microbial genomics researchers in Canada Learn more about the latest research in the environment, foresty, bioenergy & bioproducts, crops, livestock, aquaculture & fisheries and metagenomics This networking event is hosted by the Canadian Genome Centres (CGC) The CGC are catalyzing solutions to world-wide challenges through strategic investments in genomics research projects We are looking forward to meeting new partners and reseachers from around the world Light refreshments will be served so pre-registration is required

6:20pm - 8:00pm IWGSC Business Meeting - PACIFIC SALON 4-5 (2ND FLOOR)

38

Sunday - January 11, 2015



8:00am - 10:10am Applied Triticeae Genomics - PACIFIC SALON 4-5 (2ND FLOOR) Organizer: Michael Bevan, John Innes Centre

8:00am Daniel Rokhsar, DOE Joint Genome Institute "Progress in Wheat Structural Genomics" (W029)

8:20am Matthias Pfeifer, Plant Genome and Systems Biology, Helmholtz Center Munich "Comparative Analysis of Gene Expression Regulation Among Diploid and Polyploid Wheat Genomes" (W030)

8:40am Aurelie Evrard, INRA GDEC "Epigenomic Maps of Bread Wheat Chromosome 3B" (W031)

9:00am Katherine Jordan, Kansas State University "Sequence-Based Map Development of Wheat NAM Populations" (W032)

9:20am Ksenia Krasileva, University of California Davis "Tilling for Disease Resistance Genes" (W033)

9:40am Brande Wulff, John Innes Centre "Battling Stem Rust with Cloned Resistance Genes: NB-LRRs in the Haystack" (W034)

10:00am Kirby Nilsen, University of Saskatchewan "An Integrated Genomic Approach Towards Cloning the Stem Solidness Gene Sst1 in Wheat" (W035)

8:00am - 10:10am Comparative Genomics - GOLDEN WEST Organizers: Yong Q Gu, USDA ARS, Western Regional Research Center and Nathan M Springer, University of Minnesota

8:00am Ksenia Krasileva, University of California Davis "One Plant - Multiple Genomes: Phasing Homeologs in Polyploid Wheat" (W162)

8:20am Candice Hirsch, University of Minnesota "Comprehensive De Novo genome Assemblies and Resequencing of Diverse Individuals Provides Insights into Structural Diversity and the Relationship with Transcriptional Diversity in Maize" (W163)

8:40am Joachim Messing, Rutgers University "Genomic Insights into the Evolution of Angiosperms" (W164)

9:00am Michele Morgante, Università di Udine and Istituto di Genomica Applicata "From One To The Many Genomes Of A Plant: The Evolution Of The Grapevine Pan-Genome" (W165)

9:20am Robert Schmitz, University of Georgia "Comparative Epigenomics: Exploring Patterns of DNA Methylation throughout Flowering Plants" (W166)

9:40am Jan Dvorak, Department of Plant Sciences, University of California "Slow Rate of Genome Evolution and Frequent Cycles of WGD followed by Dysploid Reduction in Woody Rosids"

39


8:00am - 10:10am Development and Application of Transgenic Technology in Agriculture - ROYAL PALM SALON 3-4 Organizer: Ashok Shrawat, Monsanto

8:00am Jian-Kang Zhu, Purdue University

"Gene Editing in Plants using CRISPR/Cas and TALENs" (W220)

8:20am Beat Keller, University of Zurich "Lessons Learnt from Transgenic Gene Pyramiding for Classical Resistance Breeding in Wheat" (W221)

8:40am Yinong Yang, Pennsylvania State University "Plant Genome Editing and Precision Breeding with CRISPR-Cas9 System" (W222)

9:00am Jay Shockey, USDA-ARS, Southern Regional Research Center "Sanding the Rough Edges: In Search of Enhanced Performance of Engineered Enzymes in Transgenic Systems" (W223)

9:20am Vai Lor, University of Minnesota "Targeted Mutagenesis of the Tomato Procera Gene Using TALENs" (W224)

8:00am - 10:10am Equine 2 - ROYAL PALM SALON 5-6 Organizers: Scott V Dindot, Texas A & M University and Theodore S Kalbfleisch, University of Louisville

8:00am Shashikant Pujar, NCBI, National Institutes of Health "Equine Genome Resources at National Center for Biotechnology Information"

8:15am David B Jaffe, Broad Institute "Galloping into the future: how we could create reference genomes for many horse breeds at about $30K each"

8:35am Bin LIU, Ceter of Systematic Genomics, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences

"Toward a high quality reference genome map of the domestic horse with whole genome physical mapping and the integration of genome sequence"

8:55am Theodore S Kalbfleisch, University of Louisville "Work Toward EquCab3: A New Reference Genome Sequence for the Domestic Horse"

9:20am Robert Schaefer, University of Minnesota "Selection of Tagging SNPs and Imputation Efficiency of the 670K Commercial SNP Chip"

9:50am James M Reecy, Department of Animal Science, Iowa State University "Update on NRSP8 Activities"

40


8:00am - 10:10am Gene Introgression - PACIFIC SALON 2 Organizers: Theresa A Musket, University of Missouri and Ian P King, University of Nottingham

8:00am Marta Molnar-Lang, Agricultural Institute, Centre for Agricultural Research, Hungarian

Academy of Sciences, "Introgression of Useful Agronomic Traits from Barley into Wheat" (W324)

8:20am Jesse Poland, Kansas State University "A Tale of Two Accessions: Rapid Curation of Germplasm Collections Using Genotyping-by-Sequencing" (W325)

8:40am Nils Stein, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) "Hordeum bulbosum - Genetic Resources for Barley Crop Improvement Revisited" (W326)

9:00am Yehoshua Saranga, R H Smith Institute of Plant Science & Genetics in Agriculture, The Hebrew University of Jerusalem

"Introgression of Wild Alleles for Improving Abiotic Stress Resistance in Crop Plants" (W327)

9:20am Steven S Xu, USDA-ARS "Targeted Introgression of Stem Rust Ug99 Resistance from Wheatgrasses into Pasta and Bread Wheat" (W328)

9:40am Xiang Guo, Institute of Genetics and Developmental Biology "High Resistant Genes of Leaf Rust and Fusarium Transferred to Wheat from Thinopyrum intermedium and Th elongatum" (W329)

8:00am - 10:10am Plant Phenotypes - PACIFIC SALON 3 Organizers: Mary Schaeffer, USDA ARS and University of Missouri and Chi-Ren Shyu, University of Missouri

8:00am Tobias Wuerschum, State Plant Breeding Institute, University of Hohenheim "Precision Phenotyping in Plant Breeding" (W548)

8:18am Edwin Reidel, LemnaTec "HIGH-THROUGHPUT PHENOTYPING – Easing the Genomics-to-Cultivar Bottleneck" (W549)

8:36am Rex Nelson, USDA-ARS-CICGRU "Phenotypes as an Organizing Principle at SoyBase and LegumeInfo Databases" (W550)

8:54am Ethalinda Cannon, Iowa State University "QTL Data Standards at PeanutBase and LegumeInfo" (W551)

9:12am Laurel Cooper, Department of Botany & Plant Pathology, Oregon State University "Curating Maize Diversity: Plant Trait Ontology Annotations for GWAS and QTL Data" (W552)

9:30am Lisa Harper, USDA ARS "An Ontology Approach to Comparative Phenomics in Plants" (W553)

41


8:00am - 10:10am QTL Cloning - TOWN AND COUNTRY Organizer: Roberto Tuberosa, DipSA - University of Bologna

8:00am Peter Langridge, Australian Centre for Plant Functional Genomics

"The Role of Gene Duplication and Allelic Diversity in Adaptation for High Soil Boron" (W619)

8:20am Jose Barrero, CSIRO, Agriculture Flagship "Cloning a Major QTL for Dormancy in Wheat" (W620)

8:40am Andrew K Borrell, University of Queensland "Identifying the Function of Sorghum's Drought Tolerance Stay-Green QTL" (W621)

9:00am Yuqing He, National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University

"qPC1 Functions as an Important Regulator of Protein Content and Starch in Rice Grain" (W622)

9:20am Fabien Cormier, BIOGEMMA "Defining QTL Boundaries from GWAS Results" (W623)

9:40am Meiping Zhang, Texas A&M University "Molecular Mechanisms of Quantitative Genetics Revealed By Cloning and Systems Analysis of 474 Genes Controlling Fiber Length in Cotton and 1,501 Genes Controlling Grain Yield in Maize" (W624)

8:00am - 10:10am Solanaceae - PACIFIC SALON 1 Organizers: David Douches, Michigan State University and Giovanni Giuliano, ENEA - Italian Agency for New Technologies

8:00am Kazuki Saito, RIKEN Center for Sustainable Resource Science "Identification of Sterol Side Chain Reductase 2 (SSR2), a Key Enzyme in the Biosynthesis of Cholesterol As the Common Precursor of Toxic Steroidal Glycoalkaloids in Potato" (W672)

8:20am Bjorn Usadel, Forschungzentrum Juelich & RWTH Aachen "Broadening the Genomic Scope for the Solanaceae: New Genome Approaches" (W673)

8:40am Christian Bachem, Plant Breeding Wageningen University & Research centre, Wageningen, Netherlands

"Potato StCDF1: A Master Regulator for Potato Tuber Development" (W674)

9:00am Yaniv Semel, Phenome Networks "A Collaborative Platform for Sharing and Analyzing Phenotypic Data" (W675)

9:20am Shelley Jansky, USDA-ARS "Reinventing Potato at the Diploid Level" (W676)

9:40am James Giovannoni, USDA-ARS and Boyce Thompson Institute for Plant Research "Transcriptional Control of Tomato Fruit Ripening Is Mediated By Diverse Positive and Negative Regulators" (W677)

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8:00am - 10:10am Sorghum/Millet - PACIFIC SALON 6-7 (2ND FLOOR) Organizer: Yinghua Huang, USDA ARS

8:00am Yinghua Huang, USDA ARS

"Introduction" (W683)

8:05am Jeffrey L Bennetzen, University of Georgia "Genetic Analysis of Seed Nutritional Content in Tef Millet" (W684)

8:30am Xiaoqing Yu, Iowa State University "Genomic Selection of 1,000 Biomass Sorghum Accessions and Empirical Validation" (W685)

8:55am Dong Zhang, University of Georgia "Comparative Genetics of Inflorescence and Plant Height Components in Divergentcereal Lineages Represented By Sorghum (Panicoidae) and Rice (Oryzoidae)" (W686)

9:20am Geoffrey Morris, Kansas State University "Dissecting Complex Traits in Sorghum with a Nested Association Mapping Population" (W687)

9:45am Zhanguo Xin, USDA ARS "Potential of Multiseeded Mutant (msd) to Boost Sorghum Grain Yield" (W688)

8:00am - 10:10am Resources and Programs for Undergraduate Education in Genomics - TOWNE Organizer: Scott T Woody, U Wisconsin-Madison

8:00am Scott T Woody, U Wisconsin-Madison "GameteMaker: A Genetic Mapping Simulation Program That Helps Students to Connect Mutant Phenotypes with Underlying, DNA Sequence-Based Genotypes" (W631)

8:20am Dave Micklos, DNA Learning Center "Using Students' Own DNA Sequences to Explore Human Evolution" (W632)

8:40am Irina Makarevitch, Hamline University "Training Students in Analyzing "Big Data" �: Res (W633)

9:00am Brent Buckner, Truman State University "Introducing Undergraduate Students to Gene and Genome Structure through Gene Annotation" (W634)

9:20am James Burnette, University of California, Riverside "Neil A Campbell Science Learning Laboratory and the Dynamic Genome Course: Models for Authentic Research Experiences in the Teaching Laboratory" (W635)

9:40am Vincent Buonaccorsi, Juniata College "Undergraduate Genomics Research through GCAT-SEEK: The Genome Consortium for Active Teaching Using Next-Generation Sequencing" (W636)

43


8:00am - 12:00pm Aquaculture Poster Session - LOWER LEVEL POSTER AREA Organizer: Roger L Vallejo, USDA-ARS-NCCCWA

8:00am Andrew Jasonowicz, University of Washington "Population Genomics of West Coast and Alaskan Sablefish (Anoplopoma fimbria)"

8:05am Barbara Picone, University "Comparative Analysis of De novo Assembled Transcriptome Data from Cultured and Wild Specimens of the South African Abalone (Haliotis midae: Gastropoda, Haliotidae)"

8:10am Bam D Paneru, Middle Tennessee State University "RNA-Seq Identifies SNPs Associated with Muscle growth and Quality in Rainbow Trout"

8:15am Yuanyuan Wang, Tokyo University of Marine Science and Technology "Identification of White Spot Syndrome Virus Homologues in the Genome of Kuruma Shrimp"

8:20am Agnieszka Stadnik, Simon Fraser University "Yeast Two Hybridization Analyses of Atlantic Salmon Sdy Interactions"

8:25am Ailu Chen, The Fish Molecular Genetics and Biotechnology Laboratory "Allele-Specific Expression in Interspecific Catfish Hybrids"

8:30am Carlos M Rodriguez Lopez, University of Adelaide "Can Epigenetic Regulation of Sex-Ratios Explain Natural Variation in Self-Fertilization Rates?"

8:35am Orly Eshel, Volcani Research Center "Detection of Genes and microRNA Involved in Sex Determination in Nile Tilapia (Oreochromis niloticus)"

8:40am Xin Geng, Auburn University "GWAS Analyses in Catfish Reveal the Presence of Functional Hubs of Related Genes within Major QTLs for Columnaris Disease Resistance"

8:45am Alexandre R Caetano, Embrapa Recursos Genéticos e Biotecnologia "De Novo Genome Assembly of the South American Freshwater Fish Tambaqui (Colossoma macropomum)"

8:50am Catherine Purcell, Southwest Fisheries Science Center, National Marine Fisheries Service "Stepping Toward Sustainable Aquaculture: Genomic Resource Development to Help Guide Broodstock Selection and Culture Practices for the California Yellowtail, Seriola lalandi"

8:55am Cristian Araneda, Universidad de Chile, Depto de Produccion Animal "Contrasting Patterns of Neutral and Adaptive Genetic Variation of Chilean Blue Mussel (Mytilus chilensis) Due to Local Adaptation and Aquaculture"

9:00am Geoff Waldbieser, USDA - Agricultural Research Service "A Genome Sequence Assembly for Channel Catfish, Ictalurus punctatus"

9:05am Hao Ma, West Virginia University "Identification of mitochondrial microRNAs related to postovulatory aging-induced egg deterioration in rainbow trout"

9:10am Roger L Vallejo, USDA-ARS-NCCCWA "Accuracy of Genomic Prediction for BCWD Resistance in Rainbow Trout Using 24K RAD-SNP and 49K SNP and Bayes B/C and single-step GBLUP methods"

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9:15am Rune Andreassen, Oslo and Akershus University College of Applied Sciences

"Tissue and Disease Specific Expression of miRNA Genes in Atlantic Salmon"

9:20am Weiwei You, Xiamen University "New Insights into the Differences Between Triploid and Diploid Fujian Oyster By Integrated Gene Expression Profiling and Proteomic Analyses"

9:25am Yniv Palti, USDA-ARS-NCCCWA "The Development and Characterization of a 57K SNP Array for Rainbow Trout"

9:30am Jun Yao, Auburn University "Transcriptomic Signatures in Common Carp Skin during Scale Regeneration"

9:35am Prasanthi P Koganti, West Virginia University "Differential Expression of Mirnas in Skeletal Muscle of Rainbow Trout Under the Influence of Estrogen"

9:40am Qifan Zeng, Auburn University "RNA-Seq Analysis Unraveled Genes and Pathways Involved in Testicular Differentiation in Channel Catfish"

9:45am Rafet Al-Tobasei, Middle Tennessee State University "Genome-Wide Discovery of Long Non-Coding RNAs in Rainbow Trout and Their Potential Roles in Muscle Growth and Quality"

9:50am Alejandro P Gutierrez, Simon Fraser University "Characterization of Maskin Isoforms in Atlantic Salmon, a Candidate Gene Associated to Sexual Maturation"

9:55am Andreas Borchel, Leibniz Institute for Farm Animal Biology (FBN) "Distinct Tissue-Specific Gene Expression Reveals Different Creatine-Synthesizing Pathways Between Mammals and Fish"

10:00am Caird E Rexroad, III, USDA-ARS-NCCCWA "Development of a Fluidigm SNP Panel for Genetic Analysis in Rainbow Trout"

10:05am Chen Jiang, The Fish Molecular Genetics and Biotechnology Laboratory "Characterization of Complement Regulatory Genes in Channel Catfish and Their Involvement in Disease Defense Response"

10:10am Geoff Waldbieser, USDA - Agricultural Research Service "Production of Large Insert Paired Reads for a Genome Assembly of the Blue Catfish, Ictalurus furcatus"

10:15am Jian Wang, West Virginia University "Comprehensive Characterization of 9,674 Rainbow Trout (Oncorhynchus mykiss) Large Intergenic Noncoding RNAs Using Next Generation Sequencing"

10:20am Jinzeng Yang, University of Hawaii at Manoa "Evaluation of Seven Microsatellite DNA Markers for Their Genetic Variation and Application to Paternity Determination in Pacific White Shrimp, Penaeus vannamei "

10:25am Krista M Nichols, NOAA Fisheries "The Genetic Basis of Age at Maturity in Hatchery and Natural Origin Chinook Salmon (Oncorhynchus tshawytscha)"

10:30am Soniya Balli, University of Massachusetts Dartmouth "Understanding Behavioral Variation in Populations of Rainbow Trout"

10:35am Timothy D Leeds, USDA-ARS-NCCCWA "Rainbow Trout (Oncorhynchus mykiss) Resistance to Columnaris Disease Is Heritable and Favorably Correlated with Bacterial Cold Water Disease Resistance"

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8:00am - 12:40pm Cattle/Sheep/Goat 2 - SAN DIEGO Organizer: Wansheng Liu, Department of Animal Science, Penn State University

8:00am Harvey Blackburn, National Center for Genetic Resources Preservation, USDA

"A Livestock Database for Long Term Storage and Use of Genomic and Other Associated Information" (W123)

8:20am Heather J Huson, Cornell University "A Genetic Investigation of Isle of Jersey Cattle, the Foundation of the Jersey Breed" (W124)

8:40am Derek Bickhart, Animal Genomics and Improvement Laboratory, USDA-ARS "The Use of PacBio and Hi-C Data in de novo Assembly of the Goat Genome" (W125)

9:00am Raluca Mateescu, Dept of Animal Sciences, University of Florida "Genomic Analyses for Palatability of Beef" (W126)

9:20am Shannon Clarke, Invermay Agricultural Centre, AgResearch Ltd "Utilisation of the Ovine HD SNP Chip for Meat Quality Traits in NZ Composite Terminal Sire Breeds" (W127)

9:40am Stephanie McKay, University of Vermont "DNA Methylation Affects Phenotypic Variation in Cattle Possessing Extreme Phenotypes for Residual Feed Intake" (W128)

10:00am Break 10:30am Brian W Kirkpatrick, University of Wisconsin-Madison

"Mapping a Major Gene for Bovine Ovulation Rate" (W129)

10:50am Russell Lyons, School of Veterinary Science, The University of Queensland "Evidence for Positive Selection of Taurine Genes within a QTL Region on Chromosome X Associated with Testicular Size in Australian Brahman Cattle" (W130)

11:10am Yang Da, Department of Animal Science, University of Minnesota "Genome Changes Due to Forty Years of Artificial Selection Associated with Divergent Dairy Production and Reproduction" (W131)

11:30am Stéphane Fabre, INRA "Major Genes Influencing Prolificacy in Sheep: A Source of Basic Knowledge of Ovarian Function and a Tool for Genetic Improvement" (W132)

12:10pm Laercio Portoneto, CSIRO Agriculture Flagship "A Systems Biology Approach to Prioritize SNP and Genes Affecting Fertility in Tropical Beef Cattle" (W133)

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8:00am - 12:40pm Genome annotation resources at the EBI - CALIFORNIA Organizer: Sandra Orchard, EMBL-EBI

8:00am Sandra Orchard, EMBL-EBI

"Introduction”

8:15am Emily Perry, European Bioinformatics Institute (EMBL-EBI) "Browsing Genes and Genomes with Ensembl and Ensembl Genomes" (W332)

9:15am Gary Saunders, European Bioinformatics Institute (EMBL-EBI) "New Variation Archive at EMBL-EBI: European Variation Archive" (W333)

9:45am Toby Hunt, Wellcome Trust Sanger Institute "Manual Genome Annotation and Vega" (W334)

10:15am Maria Keays, European Bioinformatics Institute (EMBL-EBI) "Functional Genomics Resources at EBI: ArrayExpress and Expression Atlas" (W335)

10:45am Claire O'Donovan, European Bioinformatics Institute (EMBL-EBI) "Manual and Automatic Annotation of Plants and Animals in the UniProt Knowledgebase and the Gene Ontology" (W336)

11:15am Sandra Orchard, EMBL-EBI "Metabolomics and Small Molecule Resources at the EBI" (W337)

11:45am Katrina Costa, EMBL-EBI "Training in Data, Tools and Resources for Life Scientists" (W338)

12:15pm Dominic Clark, EMBL-EBI "Introducing the EMBL-EBI Industry Program" (W339)

8:00am - 12:40pm Poultry 2 - SUNSET Organizers: Fiona McCarthy, University of Arizona and Douglas D Rhoads, University of Arkansas

8:00am Jiuzhou Song, University of Maryland

"Non-Coding RNA Identification of Marek’s Disease in CD4+ T Cells" (W604)

8:20am Tae Hyun Kim, University of California "Neal Jorgenson Genomics Award: RNA-Seq Based Genome-Wide Analysis of Genomic Imprinting in Chicken Lungs" (W605)

8:40am Wesley Warren, The Genome Institute "Update on the Chicken Genome" (W606)

9:00am Steffen Weigend, Institute of Farm Animal Genetics, Friedrich Loeffler Institut "Genome-Wide Pattern and Magnitude of Genetic Diversity in a Wide Range of Diverse Chicken Breeds" (W607)

9:40am William Muir, Purdue University "Use of Allele Specific Expression to Fine Map QTL and Enhance Genomic Selection" (W608)

10:00am Break 10:30am Byung-Whi Kong, University of Arkansas

"Bioinformatic Interpretation through Upstream and Functional Analysis of Global Gene Expression Associated with Feed Efficiency in Broiler" (W610)

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10:50am Douglas D Rhoads, University of Arkansas

"Genome Analysis of a Bacterium that Causes Lameness" (W611)

11:10am Douglas D Rhoads, University of Arkansas "NC1170 Business Meeting" (W612)

8:00am - 12:40pm Sugar Cane (ICSB) - ROYAL PALM SALON 1-2 Organizers: Paul H Moore, Centro de Tecnologia Canavieira and T Erik Mirkov, Texas A&M University

8:00am Changsoo Kim, University of Georgia

"Comparative Analysis of Miscanthus and Saccharum Reveals a Shared Whole-Genome Duplication but Different Evolutionary Fates" (W748)

8:30am Jianping Wang, University of Florida "Diversity and Exome Variation in Saccharum Spp" (W749)

9:00am Jorge A Da Silva, Texas A&M University "Using Next Generation Sequencing for Tagging Stress Resistance Genes from S spontaneum" (W750)

9:30am Break 10:00am Fredy Altpeter, University of Florida - IFAS

"TALEN-Mediated Precision Mutagenesis and Intragenic RNAi for Lignin Reduction in Sugarcane" (W751)

10:30am Fredy Altpeter, University of Florida - IFAS "Metabolic Engineering of Sugarcane for Production of Oil and Increased Biomass Yield" (W752)

11:00am B Parameswari, Sugarcane Breeding Institute Regional Centre "Genome Organization and Molecular Characterization of P1 Suppressor from Indian Sugarcane Streak Mosaic Virus isolates" (W753)

11:30am Frederik C Botha, Sugar Research Australia Limited "Metabolic Changes Associated with the Development of Yellow Canopy Syndrome in Sugarcane" (W754)

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8:00am - 6:10pm Forest Tree - SUNRISE Organizers: Nathaniel R Street, Umeå Plant Science Centre, Umeå University , Larry Smart, Cornell University and Jeanne Romero-Severson, University of Notre Dame This workshop will consist of four sessions roughly organized as follows: 8:00-9:50 Session One: Ecological and Evolutionary Genomics 10:30-12:30 Session Two: Structural Genomics and Markers 13:30-15:30 Session Three: Genome Networks and Regulation 16:00-17:20 Session Four: Comparative Genomics

8:00am Welcome Remarks 8:10am Jarkko T Salojärvi, University of Helsinki

"Silver Birch - a Model for Tree Genetics?” (W267)

8:50am Liang-Jiao Xue, University of Georgia "Exploiting Genome Variation to Improve Next-Generation Sequencing Data Analysis and CRISPR gRNA Design in Populus tremula x alba 717-1B4" (W268)

9:10am Thomas Lane, University of Tennessee Institute of Agriculture "Developing Genomic Resources for Green Ash through Deep Transcriptome Sequencing and Low-Coverage Whole Genome Sequencing" (W269)

9:30am Jérôme Bartholomé, INRA "High-Resolution Genetic Maps of Eucalyptus Hybrids Improve E grandis Genome Assembly and Give Insight into Genes Associated with Carbon Isotope Composition" (W270)

9:50am Break 10:30am Matthew S Zinkgraf, US Forest Service

"Combinatorial Regulation of Gene Expression in the Vascular Cambium of Populus trichocarpa" (W271)

10:50am Andrew Groover, US Forest Service "Transcriptional and Hormonal Control of Gravitropism and Tension Wood Formation in Populus" (W272)

11:10am Hazel Katherine Smith, University of Southampton "Adaptation to Drought in Populus: Is Leaf Growth a Key Trait?" (W273)

11:30am Hairong Wei, Michigan Technological University "Identifying Genes Controlling Complex Traits in Forest Trees via Network Construction and Decomposition" (W274)

11:50am Xiaohan Yang, Oak Ridge National Laboratory "Genome-Wide Discovery of Non-Coding RNAs in Willow (Salix purpurea)" (W275)

12:10pm Lunch 1:30pm Emily Grau, UC Davis

"TreeGenes: A Comprehensive Resource for Forest Tree Genomics" (W276)

1:50pm Margaret Staton, University of Tennessee Institute of Agriculture "The Hardwood Genomics Project: Outcomes and Future Directions after Four Years of Resource Development" (W277)

2:10pm Elizabeth Sollars, Queen Mary University of London "The Genome of Fraxinus excelsior (European ash)" (W278)

2:30pm TBD "Coupling Metabolomics, mQTL and Association Genetics Analyses to Identify Genes Regulating the Production of Metabolites" (W279)

49


2:50pm Craig H Carlson, Cornell University

"Transcriptome Variation in Shrub Willow (Salix) Hybrids" (W280)

3:10pm Mike Allwright, University of Southampton "Improving Poplar for Biofuel Applications: Elucidating the Genetic Basis of Important Traits in Populus nigra through an Association Genetics Approach in a Natural, Wide Mapping Population" (W281)

3:30pm Coffee Break 4:00pm Sam Yeaman, University of British Columbia

"Contrasting Genomic Signatures of Local Adaptation in Lodgepole Pine (Pinus contorta) and Interior Spruce (Picea glauca x Picea engelmannii)" (W282)

4:20pm Stephen Keller, University of Vermont "Adaptive Gene-Environment Associations in Populus flowering Time Genes: New Insights from the Southern Range Edge of Balsam Poplar" (W283)

4:40pm Benjamin Hornoy, Université Laval "Differential Genetic Adaptation to Climate within and Between Two Picea species (P mariana and P glauca)" (W284)

5:00pm Adriana Suarez-Gonzalez, Department of Botany, University of British Columbia "Evidence That Allelic Introgression from Populus balsamifera (balsam poplar) Underlies Local Adaptation in P trichocarpa (black cottonwood)" (W285)


10:30am - 12:40pm Abiotic Stress - GOLDEN BALLROOM Organizer: Henry T Nguyen, University of Missouri

10:30am Henry T Nguyen, University of Missouri "Opening Remarks"

10:35am Jurandir Magalhaes, Embrapa Maize and Sorghum "Phosphorus-Starvation Tolerance 1 Enhances Phosphorus Acquisition and Sorghum Performance on Low-Phosphorus Soils" (W002)

10:55am Deyue Yu, Nanjing Agricultural University "Function and Diversity of GmACP1, an Important Factor Modulating Soybean Tolerance to Low-P Stress" (W003)

11:15am Himabindu Kudapa, ICRISAT "Gene Expression and Protein-Protein Interaction Analysis for Understanding Drought Tolerance Mechanism in Chickpea (Cicer arietinum L)" (W004)

11:35am Li Lin, University of Missouri "Direct Signaling Crosstalk Between Brassinosteroid and Abscisic Acid Regulates Root Growth Maintenance during Water Deficits in Soybean" (W005)

11:55am Ramanjulu Sunkar, Oklahoma State University "Role of MicroRNAs in Plant Abiotic Stress Responses" (W006)

12:15pm Germain C Pauluzzi, University of California, Riverside "Accessing Multi-Tiered and Cell-Specific Regulation of Responses to Abiotic Stress in Crops" (W007)

50


10:30am - 12:40pm Cat & Dog Workshop - ROYAL PALM SALON 5-6 Organizers: William J Murphy, Texas A&M University and Adam R Boyko, Cornell University This workshop was sponsored in part by generous contributions from The Morris Animal Foundation and Illumina The Cat & Dog workshop will provide presentations of cat and dog genetic studies that have been submitted to PAG from both USA and non-USA researchers The workshop will also have discussion topics, covering areas of interest that would be of value to the overall communities and young investigators

10:45am Introductory Remarks 10:30am Michael J Montague, Washington University School of Medicine

"Comparative Analysis of the Cat Genome Reveals Clues to Feline Domestication" (W108)

10:45am Barbara Gandolfi, University of Missouri-Columbia "Inherited Osteoarthropathy in Scottish Fold Cats Is Associated with Altered Calcium Channel Function" (W109)

11:00am William J Murphy, Texas A&M University "Mapping Traits in Feline Hybrids" (W110)

11:15am Leslie A Lyons, University of Missouri-Columbia "Recent successes and growth of the 99 Lives Cat Genome Sequencing Initiative" (W111)

11:33am Julia Wildschutte, University of Michigan "Activities and Biological Implications of Mobile Elements in Canines" (W112)

11:48am Adam R Boyko, Department of Biomedical Sciences Cornell University "Signatures of Positive Selection in the Dog Genome" (W113)

12:03pm Brian W Davis, NHGRI "Utilization of Contemporary Canine Diversity to Investigate Breed-Specific Selection and Trait Fixation" (W114)

12:18pm Jennifer Meadows, Uppsala University "Dissecting the Role Regulatory Variants Play in the Subphenotypes of Canine Complex Traits" (W115)


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10:30am - 12:40pm Computational Gene Discovery - PACIFIC SALON 3

Organizer: Mark Borodovsky, Georgia Institute of Technology 10:30am Ivan Liachko, University of Washington - Department of Genome Sciences

"Chromosome-Scale Scaffolding of de novo Genome Assemblies Using Hi-C" (W179)

10:50am Anna Vlasova, Center for Genomic Regulation "Annotation of Protein Coding Genes for Non-Model de-novo Sequenced Organisms" (W181)

11:10am Stephane Rombauts, Ghent University "Complexity of Gene Landscape Beyond Model Organisms" (W180)

11:30am Katharina Hoff, University of Greifswald "Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and Augustus" (W182)

11:50am Alexandre Lomsadze, Georgia Institute of Technology "Integration of ab initio Gene Finding with Mapping of Homologous Proteins" (W183)

12:10pm Minoru Kanehisa, Institute for Chemical Research, Kyoto University "Automated Interpretation of Metabolic Capacity from Complete Genomes Using KEGG Modules" (W185)

12:30pm Seong W Cha, University of California San Diego "Proteogenomics of Cancer: Peptides to Events" (W184)

10:30am - 12:40pm EPIC: the Plant Epigenome Project - TOWN AND COUNTRY Organizer: Robert Martienssen, Cold Spring Harbor Laboratory

10:30am Linda Hanley-Bowdoin, NC State University "Chromatin Dynamics during DNA Replication" (W241)

11:00am Laura Gardiner, University of Liverpool "A Genome-Wide Epigenetic Study of Hexaploid Wheat" (W240)

10:30am - 12:40pm Fungal Genomics - ROYAL PALM SALON 3-4 Organizer: Stephen B Goodwin, USDA ARS

10:50am Niklaus Grunwald, USDA-ARS "Comparative Genomics of Phytophthora rubi and P fragariae" (W311)

11:10am N Louise Glass, University of California "Regulatory Networks Associated with Plant Cell Wall Deconstruction by Fungi" (W312)

11:30am Cheng-Cang Charles Wu, Intact Genomics, Inc "Fungal SM Genome Biology: How to Translate Whole Genome Sequence Information into the Secondary Metabolome in Filamentous Fungi?" (W313)

11:50am Braham Dhillon, University of British Columbia "Cronartium Comparative Genomics: Understanding the Canker Causing Basidiomycete Genomes" (W314)

12:10pm Kerri Neugebauer, Kansas State University "Wheat Expression Differences Induced by Six Puccinia triticina Races" (W315)

12:30pm Li-Jun Ma, University of Massachusetts Amherst "A Unique Set of Supernumerary Chromosomes in the Genome of Fusarium oxysporum NRRL32931 Contributes to its Pathogenicity" (W316)

52


10:30am - 12:40pm Genomics of Non-Classical Model Animals - PACIFIC SALON 4-5 (2ND FLOOR)

Organizer: Aaron Avivi, Institute of Evolution, Haifa University, Israel

10:30am Paul W Sternberg, Division of Biology and Biological Engineering, Caltech, Pasadena

"Genomics of Nematode Parasites of Pigs, Sheep, and Other Animals: Towards Understanding Human Immune Modulation" (W359)

10:50am Jong Bhak, UNIST "The Tale of Whales Genomics in Aquatic Adaptation - Might It be Associated with Human Disease?" (W360)

11:10am Rasmus Nielsen, Department of Integrative Biology and Statistics "Polar Bears Genomics and Its Association with Cardiomyopathy and Vascular Disease" (W361)

11:30am Morten E Allentoft, Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen

"Derived Immune and Ancestral Pigmentation Alleles in a 7,000-Year-Old European Hunter-Gatherer" (W362)

11:50am Gabriel Haddad, University of California, San Diego "Adaptation to High Altitude: Does It Teach Us about the Pathobiology of Hypoxia at Sea Level?" (W363)

10:30am - 12:40pm Organellar Genetics - PACIFIC SALON 6-7 (2ND FLOOR) Organizer: Michael J Havey, USDA-ARS and University of Wisconsin

10:30am Ian Small, The University of Western Australia

"Predicting and Verifying Binding Sites for Pentatricopeptide Repeat (PPR) Proteins" (W482)

11:00am Felix Grewe, The Field Museum of Natural History "The Mitochondrial Genome Evolution of the Geranium Family: Elevated Substitution Rates Decrease Genomic Complexity" (W483)

11:30am Marisa Elena Miller, University of Minnesota/USDA-ARS "Understanding the Role of Cytoplasmic Genomes in Stress Tolerance in Wheat" (W484)

12:00pm Michael J Havey, USDA-ARS and University of Wisconsin "The Mosaic Mutants of Cucumber: A Method to Produce Mitochondrial Knock-Downs" (W485)

53


10:30am - 12:40pm Plant Chromosome Biology - PACIFIC SALON 1 Organizer: Fangpu Han, Chinese Academy of Sciences

10:30am James A Birchler, University of Missouri

"Construction and Applications of Engineered Minichromosomes in Plants" (W520)

10:50am R Kelly Dawe, University of Georgia "Maize siRNAs are Associated with Euchromatin-like Environments that have High Accessibility and Relatively Low H3K9me2" (W521)

11:10am Gernot Presting, University of Hawaii "Impacts of Maize Domestication and Breeding on Neocentromere Formation" (W522)

11:30am Xiyin Wang, Plant Genome Mapping Laboratory, University of Georgia "Telomere-Centric Genome Repatterning Determines Recurring Chromosome Number Reductions during the Evolution of Eukaryotes" (W523)

11:50am Hong Ma, State Key Lab of Genet Eng, Sch of Life Sci, Fudan Univ "Regulation of Meiotic Chromosome Condensation Progression by the Arabidopsis MMD1 Protein and Its Interacting Protein" (W524)

12:10pm Yalin Liu, Institute of Genetics and Developmental Biology "Sequential De Novo Centromere Formation and Inactivation on a Chromosomal Fragment in Maize" (W525)

10:30am - 12:40pm Polyploidy - PACIFIC SALON 2 Organizers: Andrew Leitch, Queen Mary University of London and M Eric Schranz, Wageningen University and Research

10:30am M Eric Schranz, Wageningen University and Research "Interplay of Polyploid- and Tandem-Derived Gene Duplicates in Chemical Defense and Pathogen Recognition" (W566)

10:50am Kyung Do Kim, University of Georgia "Epigenetic Regulation of Duplicated Genes Involving Spreading of DNA Methylation in Legumes" (W567)

11:10am Damon Lisch, Purdue University "The Role That Transposable Elements May Play in Differential Expression Levels of Maize Paralogs" (W568)

11:30am Michael R Freeling, University of California "Subfunctionalization and Nonfunctionalization, Revisited" (W569)

11:50am Corrinne E Grover, Iowa State University "Evolution of Duplicated Pathways in Networks in Allopolyploid Cotton" (W570)

12:10pm Patrick Edger, University of California "The Role of Gene and Genome Duplications in Network Evolution" (W571)

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10:30am - 12:40pm Statistical Genomics - GOLDEN WEST Organizer: Shizhong Xu, University of California

10:30am Qishan Wang, University of California, Riverside

"An Empirical Bayes Method for Genome-Wide Association Studies" (W737)

10:50am Lauren M McIntyre, University of Florida "Using Path Analysis to Reveal Novel Components of the Sex Determination Hierarchy in Drosophila melanogaster" (W738)

11:10am Zhiwu Zhang, Washington State University "Getting Power Back from Population Structure and Kinship in Genome-Wide Association Studies" (W739)

11:30am Deniz Akdemir, Cornell University "Locally Epistatic Genomic Relationship Matrices for Genomic Association and Prediction" (W740)

11:50am Shizhong Xu, University of California "A Tutorial of Partial Least Squares Analysis" (W741)


1:30pm - 3:40pm Climate Change and ICRCGC 2 - PACIFIC SALON 2 Organizer: Chittaranjan Kole, Bidhan Chandra Agricultural University

1:30pm Jane Rogers, International Wheat Genome Sequencing Consortium

"Using Whole-Genome Sequences for Breeding Climate Resilient Cereals" (W152)

1:50pm Jauhar Ali, PBGB, International Rice Research Institute "Developing Crop Varieties with Genome Plasticity" (W153)

2:10pm John Mullet, Texas A&M University "Designing Flowering Times for Climate Optimized Grain and Energy Sorghum Crops" (W154)

2:30pm Michael Abberton, International Institute of Tropical Agriculture (IITA) "Mining Climate Smart Genes from Allied Gene Pools" (W155)

2:50pm Leland J Cseke, The University of Alabama in Huntsville "CO2 Sequestration to Mitigate Effects of Climate Change" (W156)

3:10pm Salvatore Ceccarelli, Free Lance "Adapting Crops to Climate Changes by Evolutionary-Participatory Plant Breeding" (W157)

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1:30pm - 3:40pm Degraded DNA and Paleogenomics - PACIFIC SALON 3 Organizer: Greger Larson, University of Oxford

1:30pm Ian Barnes, Natural History Museum

"How Do You Know When You Don't Have Any Ancient DNA?" (W212)

1:45pm Daniel G Bradley, Trinity College Dublin "The Best Bones, Imputation and Ancient Genomics" (W213)

2:00pm Jake Enk, Biodiscovery, LLC (dba MYcroarray) "Time, Temperature, and Tiling Density When Capturing Ancient DNA" (W214)

2:15pm Ludovic Orlando, Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen

"Ancient DNA: From Genomes to Epigenomes" (W215)

2:30pm Eleftheria Palkopoulou, Swedish Museum of Natural History "Genomic Diversity and Population Dynamics of the Woolly Mammoth Prior to Its Extinction" (W216)

2:45pm Peter D Heintzman, Department of Ecology and Evolutionary Biology, University of California Santa Cruz

"Resolving the Evolutionary Relationships of Two Enigmatic Ungulates from Pleistocene North America" (W217)

3:00pm Christina Warinner, Dr Christina Warinner - University of Oklahoma "Direct Evidence of Milk Consumption from Ancient Human Dental Calculus" (W218)

3:15pm Robin G Allaby, University of Warwick "A Palaeometagenomic Approach to Track the Neolithisation of Northern Europe" (W219)

1:30pm - 3:40pm Functional Genomics - PACIFIC SALON 1 Organizer: David A Lightfoot, Southern Illinois University

1:30pm Trevor Paul Garnett, The University of Adelaide

"Nitrate Responsive Transcription in Maize Is Highly Dynamic Across the Lifecycle" (W299)

1:55pm Allen Good, University of Alberta "Mapping Complex Traits in Plants: Nitrogen Use Efficiency in Barley As a Case Study" (W300)

2:20pm Stephen P Moose, University of Illinois Urbana-Champaign "NUE in Maize" (W301)

2:45pm Trevor Garnett, University of Adelaide "The Response of Maize to N Supply and Demand is Highly Dynamic Across the Lifecycle" (W302)

3:10pm Aaron Fait, Ben-Gurion University "Regulation of Amino Acid Metabolism in Tomato Seeds" (W303)

3:35pm Peizhu Guan, UCSD "Nitrate Foraging By Arabidopsis Root Is Mediated By the Transcription Factor TCP20 through the Systemic Signaling Pathway (from DNA cis-Elements to Nitrate Regulatory Network)" (W304)

56


1:30pm - 3:40pm Generic Genome Browser - CALIFORNIA Organizer: Scott Cain, Ontario Institute for Cancer Research A Hands on Workshop for Installing, Configuring and Using Your Own JBrowse

1:30pm Scott Cain, Ontario Institute for Cancer Research "JBrowse Installation and Configuration" (W330)

1:30pm - 3:40pm Grape Genome Initiative - PACIFIC SALON 6-7 (2ND FLOOR) Organizer: Grant R Cramer, University of Nevada, Reno

1:30pm Dario Cantu, University of California Davis "A Pathogenomic Approach to Decipher the Molecular Mechanisms Underlying Grapevine Diseases" (W378)

1:50pm Lance Cadle-Davidson, USDA-ARS Grape Genetics Research Unit "An Update on VitisGen: Recent Advances in Using DNA Marker Technologies in US Grape Breeding Programs" (W379)

2:10pm Allison Miller, Saint Louis University "Comparative Transcriptomics of Two Grapevine Species" (W380)

2:30pm Nacer Mohellibi, INRA - URGI "Overview of the GnpIS Grape Genomics and Genetic Integrative Resource for Diversity Studies" (W381)

2:50pm Jason Londo, USDA-ARS Grape Genetics Research Unit "The Hunt for Adaptive Variation in Wild Grapevine; Sequencing, Assembly, and Annotation of North American Vitis Reference Transcriptomes" (W382)

3:10pm Supakan Rattanakon, University of Nevada, Reno "ABA Signaling in Grapevine" (W383)

1:30pm - 3:40pm Ornamentals - ROYAL PALM SALON 5-6 Organizers: Phillip Wadl, University of Tennessee and Xinwang Wang, Texas A&M AgriLife Research Center, Texas A&M University

1:30pm Alexander Quentin Susko, University of Minnesota

"EST-SSR Development and Validation in Azalea Breeding Populations from Whole Transcriptome Sequencing" (W486)

1:50pm Deborah Dean, Department of Entomology and Plant Pathology, University of Tennessee "Wide Cross-Transferability of SSR Loci from Three Viburnum Species" (W487)

2:10pm Sumei Chen, Nanjing Agricultural University "Ambient Temperature Enhanced Freezing Tolerance of Chrysanthemum dichrum CdICE1 Overexpressing Arabidopsis via miR398" (W488)

2:30pm Takashi Handa, School of Agriculture, Meiji University "Genetic Introgression from Horticultural Varieties to Wild Species in Japanese Evergreen Azalea" (W489)

2:50pm Zhanao Deng, University of Florida "Genome Size and Chromosome Number Variation Among Caladium Species and Somaclonal Variants" (W490)

3:10pm Thomas Debener, Leibniz University of Hannover "Multi-Pathotype Resistance to Black Spot in Roses Conferred By the Rdr1 R-Gene-Family" (W491)

57


1:30pm - 3:40pm Plant Cytogenetics - PACIFIC SALON 4-5 (2ND FLOOR) Organizers: James Higgins, University of Leicester and Susan Armstrong, University of Birmingham

1:30pm Steve Barnes, SESVANDERHAVE NV

"How Can We Use Plant Cytogenetics to Solve Problems in Practical Plant Breeding?" (W526)

1:50pm Hong Ma, State Key Lab of Genet Eng, Sch of Life Sci, Fudan Univ "Function of DNA Synthesis Factors in Meiotic Recombination" (W527)

2:10pm Isabelle M Henry, Plant Biology and Genome Center, UC Davis "Effect of the Boy-Named Sue Locus on Polyploid Meiosis in Arabidopsis" (W528)

2:30pm Stefan Heckmann, University of Birmingham - School of Biosciences "Challenging Our View on Meiosis - Luzula elegans, a Plant with a Holocentric Chromosome Structure, Shows Alternative Meiotic Chromatid Segregation" (W529)

2:50pm Chloe Girard, INRA Centre de Versailles-Grignon "FIDGETIN-LIKE 1 Limits Non-Interfering Meiotic Crossovers, Independently of FANCM, by Regulating the Invasion Step of Homologous Recombination" (W530)

3:10pm Trude Schwarzacher, University of Leicester "Repetitive DNA in Plant Genomes" (W531)

1:30pm - 3:40pm Plant Reproductive Genomics - SAN DIEGO Organizer: Jim Leebens-Mack, University of Georgia

1:30pm Jim Leebens-Mack, University of Georgia

Welcome Remarks

1:35pm Zach Lippman, Cold Spring Harbor Laboratory "Meristem Maturation and Flower Production in the Solanaceae" (W555)

1:55pm Annette Becker, Justus-Liebig-University "Sequencing Output at Work - Resolving Carpel Gene Origins" (W556)

2:15pm Yaowu Yuan, The University of Connecticut "Developmental Genetics of Pollinator-Associated Floral Traits" (W557)

2:35pm Péter Szövényi, University of Zurich "Evolution of Phase-Biased Gene Expression in Land Plants" (W558)

2:55pm Stuart McDaniel, University of Florida "Genetic Conflict and the Evolution of Sporophyte-Specific Gene Expression in Ceratodon purpureus" (W559)

3:15pm Alex Harkess, Department of Plant Biology, University of Georgia "The Origin and Evolution of Dioecy and Sex Chromosomes in Asparagus" (W560)

58


1:30pm - 3:40pm Sugar Cane Sequencing Initiative - ROYAL PALM SALON 1-2 Organizers: Glaucia M Souza, Biochemistry Department - University of São Paulo , Robert Henry, University of Queensland QAAFI and Ray Ming, University of Illinois at Urbana-Champaign

1:30pm Glaucia M Souza, Institute of Chemistry - University of São Paulo

"The Genome Sequence of a Sugarcane Hybrid: Exploring Gene Alleles, Transcripts and Regulatory Elements" (W755)

1:50pm David Heckerman, Microsoft "Insights from a Long-Read Assembly of the Complex Sugarcane Genome" (W756)

2:10pm Hayan Lee, Stony Brook University "Sugarcane Genome De Novo Assembly Challenges" (W757)

2:30pm Marie-Anne Van Sluys, GaTE Lab - Botanica - Universidade de São Paulo "Sugarcane BAC Sequence Genomic Platform" (W758)

2:50pm Renato Vicentini, University of Campinas - UNICAMP "Transcriptional Dynamics of Source-Sink Balance in Sugarcane, and the R570 Transcriptome to Support Sugarcane Genome Sequencing Initiative" (W759)

3:10pm Ching Man Wai, University of Illinois at Urbana-Champaign "Transcriptomic Analysis of Extreme Segregants in an Interspecific Saccharum F2 Population" (W760)

1:30pm - 3:40pm Transposable Elements - GOLDEN BALLROOM Organizers: Jianxin Ma, Purdue University and Olivier Panaud, University of Perpignan

1:30pm Hui Guo, Plant Genome Mapping Laboratory, University of Georgia "Recent Expansion of a Novel LTR Retrotransposon in Sorghum bicolor" (W796)

1:48pm David Bertioli, University of Georgia "Transposable Elements in the A and B Genomes of Peanut" (W797)

2:06pm Chunguang Du, Montclair State University "Plant Genome Reshuffling via Rolling Circle Helitrons" (W798)

2:24pm Thomas Wicker, University of Zurich "Genome-Wide Analysis of Transposon Insertion and Excision Patterns in the Two Rice Species O sativa and O glaberrima" (W799)

2:42pm Guojun Yang, University of Toronto "Auto-Regulation of a Rice Mariner-like Element By a Subterminal Transposase Binding Site" (W800)

3:00pm Ning Jiang, Michigan State University "Transposition of a Rice Mutator-like Element in Yeast" (W801)

3:18pm Alan H Schulman, LUKE & University of Helsinki "BARE, a Multiply Mobile Retrotransposon" (W802)

59


1:30pm - 3:40pm The National Plant Genome Initiative -- Research Challenges and Resouirce Needs in Phenotyping, Cyberinfrastructure & Bioinformatics, the Microbiome? - SUNSET Organizers: Catherine Ronning, US Dept of Energy , Diane Jofuku Okamuro, National Science Foundation , Ed Kaleikau, USDA NIFA and Jack K Okamuro, USDA ARS

1:30pm Gary Atlin, Bill & Melinda Gates Foundation 1:50pm Edgar Spalding, University of Wisconsin Madison 2:10pm Leon Kochian, Robert W Holley Center, USDA-ARS & Cornell University 2:30pm Jan E Leach, Colorado State University 2:50pm Venkatesan Sundaresan, University of California-Davis 3:10pm Dave Weston, Oak Ridge National Laboratory 3:30pm Doreen Ware, Cold Spring Harbor Laboratory/USDA-ARS

1:30pm - 5:00pm Cacao Genomics Workshop - ROYAL PALM SALON 3-4 Organizer: David N Kuhn, USDA ARS SHRS

1:30pm Introductory Remarks 1:35pm Emmanuelle Muller, CIRAD-UMR BGPI

"Study on the Origin of Cacao Swollen Shoot Virus and Its Dispersal on Cacao Trees in West Africa" (W093)

1:55pm Judith K Brown, University of Arizona "Cacao Swollen Shoot Virus: A Re-Emergent, Mealybug-Transmitted Virus Spreading in West Africa" (W094)

2:15pm Bryan Bailey, Sustainable Perennial Crops Lab, USDA-ARS "The Biology, Genetic Diversity, and Genomics of Moniliophthora roreri, Causal Agent of Cacao Frosty Pod Rot" (W095)

2:35pm Shahin Ali, USDA-ARS "Biology and Genomics of Phytophthora spp: Fight Against a Potential Global Chocolate Famine" (W096)

2:55pm Stefan E Royaert, Mars Center for Cocoa Science - MARS Inc "Interspecific Hybridization Between Theobroma cacao and Theobroma grandiflorum" (W097)

3:15pm Andrew Fister, The Pennsylvania State University "Functional Genomics of Defense Response in Theobroma Cacao" (W098)

3:35pm Break 3:50pm Stefan E Royaert, Mars Center for Cocoa Science - MARS Inc

"Identification of QTL Involved in the Production of Rooted Cuttings in a Segregating Mapping Population of Theobroma cacao L in Brazil" (W099)

4:10pm Osman A Gutierrez, USDA ARS SHRS "Association Mapping in Cacao Populations from Hawaii" (W100)

4:30pm Karina Peres Gramacho, Cacao Research Center (CEPEC/CEPLAC) "Classical and 'omics' Approaches to Control Witches' Broom Disease of Cacao" (W101)

60


1:30pm - 6:10pm NRSP-8 Animal Genome - GOLDEN WEST Organizer: Stephen N White, USDA ARS Animal Disease Research

1:30pm Kim Worley, Baylor College of Medicine

"Improving the Reference - Better Genomes for the Sheep and the Cow" (W472)

2:15pm John Hickey, The Roslin Institute, University of Edinburgh "Genomic Selection 20" (W473)

3:00pm Break 3:15pm Hans Cheng, USDA, ARS, ADOL

"Integrative Genomics to Provide Basic and Applied Knowledge to Control Marek's Disease in Chicken" (W474)

4:00pm Elisabetta Giuffra, INRA, UMR de Génétique Animale et Biologie Intégrative "The Functional Annotation of Animal Genomes (FAANG) Initiative" (W475)

4:45pm FAANG Roundtable Discussion 5:15pm NRSP-8 Busniess Meeting

1:30pm - 6:10pm Palm Genomics & Genetics - TOWNE Organizers: Frederique Aberlenc-Bertossi, Institut de Recherche pour le Développement and Norbert Billotte, CIRAD

1:30pm Estelle Jaligot, CIRAD, UMR DIADE "A Story of Flasks and Flowers: New Perspectives in the Search for Markers of the Mantled Somaclonal Variation of Oil Palm" (W492)

1:50pm Alexandre Alonso Alves, Embrapa Agroenergy "Genomic Characterization of E oleifera Polymorphic Sites Based on Physical Mapping to the E guineensis Genome" (W493)

2:10pm David Cros, CIRAD "Genomic Selection for Heterosis without Dominance in Multiplicative Traits: Case Study of Bunch Production in Oil Palm" (W494)

2:30pm Chee-Keng Teh, Sime Darby Technology Centre Sdn Bhd "Genome-Wide Association Study of Oil Palm Mesocarp Oil Yield Content and Its Application for Marker Selection" (W495)

2:50pm Rajinder Singh, Malaysian Palm Oil Board "The Identification of the Fruit Colour Gene of Oil Palm and Its Implications in Improving Palm Oil Yield" (W496)

3:10pm Break 3:25pm Maxime Mercière, Cirad

"Identification and Development of New Polymorphic Microsatellite Markers for Main Causal Agent of Oil Palm Basal Stem Rot Disease using Ganoderma boninense Genome Assembly" (W497)

3:45pm Alan W Meerow, USDA, ARS, SHRS "Phylogeny and Historical Biogeography of the Cocosoid Palms (Arecaceae, Arecoideae, Cocoseae) Inferred from Sequences of Six WRKY Gene Family Loci" (W498)

61


4:05pm Joel A Malek, Weill Cornell Medical College in Qatar "Ancient Population Structure in Phoenix dactylifera Revealed By Genome-Wide Genotyping of Geographically Diverse Date Palm Cultivars" (W499)

4:25pm Robert R Krueger, USDA-ARS National Clonal Germplasm Repository for Citrus & Dates "National Date Palm Germplasm Repository" (W500)

4:45pm Osman Radwan, University of Illinois at Urbana-Champaign "Sustainable and Genomics Approaches for Date Palm Improvement to Biotic and Abiotic Stresses" (W501)


3:00pm - 8:30pm Exhibits & Posters Open - GRAND EXHIBIT HALL

4:00pm - 6:10pm Post-transcriptional Gene Regulation - ROYAL PALM SALON 1-2 Organizers: Anireddy S Reddy, Colorado State University and Asa Ben-Hur, Colorado State University

4:00pm Brian D Gregory, University of Pennsylvania "Global analysis of RNA-protein interactions and RNA secondary structure in eukaryotes" (W728)

4:25pm Klemens Hertel, University of California, Irvine (W729)

4:50pm Yiliang Ding, John Innes Centre "A Transformative Platform Deciphers the RNA Structural Code in Living Cells" (W730)

5:15pm Yoseph Barash, Perleman School of Medicine, University Pennsylvania (W731)

5:40pm Ana Conesa, Centro de Investigación Príncipe Felipe "Functional Alternative Isoform Expression Analysis Using Long Read Technologies" (W732)

4:00pm - 6:10pm Coffee Genomics - ESQUIRE Organizers: Marcela Yepes, Cornell University, Philippe Lashermes, Institut de Recherche pour le Développement and Rod A Wing, University of Arizona

4:00pm Alvaro Gaitan, Centro Nacional de Investigaciones de Cafe, CENICAFE "Long-Read Deep Sequencing and Assembly of the Allotetraploid Coffea arabica cv Caturra and its Maternal Ancestral Diploid species Coffea eugenioides"

4:40pm Michele Morgante, Università di Udine and Istituto di Genomica Applicata "Progress report on the sequencing and assembly of the allotetraploid Coffea arabica var Bourbon genome" (W158)

5:00pm Alexandre de Kochko, IRD UMR DIADE "Dihaploid Coffea arabica Genome Sequencing and Assembly" (W159)

5:20pm Romain Guyot, IRD UMR DIADE "Transposable Element Distribution, Abundance and Impact in Genome Evolution in the Genus Coffea" (W160)

5:40pm Elaine S Dias, UNESP - Universidade Estatual Paulista "Impact of Transposable Elements on the Evolution of Coffea arabica (Rubiaceae)" (W161)

62


4:00pm - 6:10pm Cotton Genome Initiative (ICGI) - PACIFIC SALON 2 Organizers: David Stelly, Texas A&M University and Tianzhen Zhang, Nanjing Agricultural University

4:00pm Rick Masonbrink, Iowa State University

"CenH3 Evolution in Diploids and Polyploids of Three Angiosperm Genera" (W192)

4:20pm Justin T Page, Brigham Young University "Gene Conversion and Cotton Allotetraploid Evolution" (W193)

4:40pm Jinping Hua, China Agricultural University "Comparison of Four Mitochondrial Genomes (Gossypium) and Analysis on the Candidate Genes of Two Cytoplasmic Male Sterile Lines in Cotton" (W194)

5:00pm Qingxin Song, UT Austin "DNA Methylation Dynamics during Fiber and Ovule Development" (W195)

5:20pm Daojun Yuan, Huazhong Agricultural University "Draft Genome of the High-Fibre-Quality Allotetraploid Cotton Gossypium barbadense" (W196)

5:40pm David Stelly, Texas A&M University "1-Minute Oral Presentations" (W197)

4:00pm - 6:10pm Cucurbit - PACIFIC SALON 4-5 (2ND FLOOR) Organizers: Amnon Levi, USDA ARS, US Vegetable Laboratory and Yaakov (Kobi) Tadmor, Newe Yaar Research Center, ARO

4:00pm Yong Xu, National Engineering Research Center for Vegetables, Beijing Academy of

Agriculture and Forestry Sciences "Resemblance and Differences in the Feral (C lanatus subsp lanatus) and Cultivated Watermelon (C lanatus subsp vulgaris) Genomes" (W204)

4:20pm Zhangjun Fei, Cornell University "Genome Sequencing of Cucurbita Species" (W205)

4:40pm Nurit Katzir, Agricultural Research Organization (ARO) "Transcriptome-Based Ultra-High Resolution QTL Analysis of Fruit Quality Traits in Melon" (W206)

5:00pm Umesh K Reddy, Department of Biology, West Virginia State University "Genome Wide Association (GWAS) Mapping of Trichome Density and Length in Watermelon" (W207)

5:20pm Linyong Mao, Boyce Thompson Institute for Plant Research "Sequencing and Assembly of the Genome of an American Watermelon Ecotype, Charleston Gray" (W208)

5:40pm Amnon Levi, USDA, ARS, US Vegetable Laboratory "A Major QTL Is Associated with Fusarium Wilt Race 1 Resistance in Watermelon" (W209)

63


4:00pm - 6:10pm Domestication Genomics - SUNSET Organizers: Briana L Gross, University of Minnesota Duluth and Allison Miller, Saint Louis University

4:00pm Roberto Papa, Università Politecnica delle Marche

"The Consequence of Domestication in the Common Bean" (W225)

4:20pm C Robin Buell, Michigan State University "Loci Involved in Domestication and Improvement of Cultivated Potato As Revealed through Genotyping of Two Diversity Panels" (W226)

4:40pm Justin Fay, Washington University School of Medicine "Yeast" (W227)

5:00pm Shelby L Ellison, University of Wisconsin-Madison "The Origin of Orange Pigment in Carrot" (W228)

5:20pm Matthew Hufford, Iowa State University "Maize and Teosinte" (W229)

5:40pm Jared E Decker, University of Missouri "Admixture and Selection after Initial Domestication of Cattle" (W230)

4:00pm - 6:10pm Genomics of Plant Development - PACIFIC SALON 6-7 (2ND FLOOR) Organizer: Khalid Meksem, Department of Plant Soil and Agricultural Systems, SIUC

4:00pm Molly Megraw, Oregon State University

"Transcription Start Site Sequencing Strongly Informs Gene Regulatory Network Inference"

4:20pm Venu (Kal) Kalavacharla, Delaware State University "Understanding Disease Resistance Signaling in Common Bean (Phaseolus vulgaris L) through Integrated Epigenomic and Transcriptomic Analyses"

4:40pm Justin E Anderson, University of Minnesota "The Search for Functional Structural Variants and Adaptive Traits in Soybean"

5:00pm Andrea L Eveland, Donald Danforth Plant Science Center "Inflorescence Architecture in Grasses: Regulatory Networks and Translational Genomics" (W364)

5:20pm Naoufal Lakhssassi, Department of Plant Soil and Agricultural Systems, SIUC "Four New Soybean Sources Carrying Novel SACPD-C Alleles Containing High Level of Seed Stearic Acid and Conferring Resistance to Soybean Cyst Nematode" (W366)

5:40pm Abdelhafid Bendahmane, INRA and INRA-URGV "Mutation Breeding in Crops and Translational Development Research" (W365)

64


4:00pm - 6:10pm Plant and Animal Paleogenomics - PACIFIC SALON 3 Organizer: Jerome Salse, INRA Clermont-Ferrand

4:00pm Welcome Remarks 4:05pm Gerald A Tuskan, Oak Ridge National Laboratory

"Key Aspects of the Plant Genomes" (W514)

4:25pm Marcel Amills, Center for Research in Agricultural Genomics "Copy Number Variation in Livestock and Companion Animals: A Window to Domestication and Other Evolutionary Processes" (W515)

4:45pm Aoife McLysaght, Smurfit Institute of Genetics "Dosage Sensitive Genes in Evolution and Disease" (W516)

5:05pm Matteo Pellegrini, University of California, Los Angeles "Genic GC3 Content and DNA Methylation Patterns in Plant and Animal Genomes’" (W517)

5:25pm Michael Axtell, Penn State University "Conserved and Divergent Features of Land Plant miRNAs and Endogenous siRNAs" (W518)

5:45pm Martin A Lysak, CEITEC, Masaryk University "Major Trends in Genome Evolution of Crucifers" (W519)

4:00pm - 6:10pm Recombination - mechanisms - PACIFIC SALON 1 Organizer: Raphael Mercier, INRA -IJPB

4:00pm Thorben Sprink, Julius Kühn Institut "The Function of the Plant Double Strand Break Initiating Proteins SPO11-1 and SPO11-2 Is Sequence and to a Certain Extent Species Specific" (W625)

4:20pm Eugenio Sanchez-Moran, School of Biosciences University of Birmingham "Histone H11, Meiotic Chromosome Axis and Recombination" (W626)

4:40pm Hong Ma, State Key Lab of Genet Eng, Sch of Life Sci, Fudan Univ "Functional Interaction of DMC1 and RAD51 during Meiotic Recombination in Arabidopsis" (W627)

5:00pm Matthieu Falque, INRA/CNRS/Univ Paris-Sud/AgroParisTech "Combined Fluorescent and Electron Microscopic Imaging Unveils the Specific Properties of Two Classes of Meiotic Crossovers" (W628)

5:20pm Ian R Henderson, University of Cambridge "Genetic and Epigenetic Control of Arabidopsis Meiotic Recombination Hotspots" (W629)

5:40pm Pierre Sourdille, INRA UMR Genetics, Diversity & Ecophysiology of Cereals "Exploitation of the First Sequenced Wheat Chromosome (3B) to Study the Variation of the Recombination Pattern" (W630)

65


4:00pm - 6:10pm Sequencing Complex Genomes - GOLDEN BALLROOM Organizer: Robert Henry, University of Queensland QAAFI

4:00pm Perla Hamon, IRD UMR DIADE

"The International Coffea Genome13 Project: A Way to Understand the Evolutionary History of Coffea Genomes and Unlock the Potential Use of Wild Species in Breeding?" (W649)

4:20pm Jacob Tennessen, Oregon State University "Evolutionary Origins and Dynamics of Octoploid Strawberry Subgenomes Revealed By Dense Targeted Capture Linkage Maps" (W650)

4:40pm Thiru Ramaraj, National Center for Genome Resources "De Novo Assembly of Plant Genomes: Hybrid Approaches for Heterogeneous NGS Data" (W651)

5:00pm Martin Mascher, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) "In Favor of a Whole-Genome Shotgun: Assembling and Anchoring the Hexaploid Bread Wheat Genome" (W652)

5:20pm Angélique D'Hont, CIRAD, UMR AGAP "Toward a Reference Sequence of the Gene-Rich Part of the Highly Polyploid Sugarcane Genome" (W653)

5:40pm Guy Kol, NRGENE Ltd "Elucidating Intra-Species Genome Complexity By Using a Novel De Novo Assembly Tool to Assemble Two Maize Inbred Lines" (W654)

4:00pm - 6:10pm Sex Chromosomes and sex determination - ROYAL PALM SALON 5-6 Organizers: Abdelhafid Bendahmane, INRA and Ray Ming, University of Illinois at Urbana-Champaign

4:00pm Susana M Coelho, CNRS-UPMC "Genomic and Evolutionary Features of the Brown Alga Ectocarpus UV Sex Chromosomes" (W655)

4:20pm Takashi Akagi, Graduate School of Agriculture, Kyoto University "Ogi, a Y-Encoded Small-RNA, Acts for Sex Determination in Diospyros Plant Species" (W656)

4:40pm Anjan K Banerjee, Indian Institute of Science Education and Research Pune (IISER Pune) "Understanding Floral Development and Sex Expression in Dioecious Coccinia grandis" (W657)

5:00pm Josh Hough, University of Toronto "Population Genetics of X and Y Chromosomes in the Dioecious Plant Rumex hastatulus" (W658)

5:20pm Stephen DiFazio, West Virginia University "Contrasting Mechanisms of Sex Determination in the Salicaceae" (W659)

5:40pm Joel A Malek, Weill Cornell Medical College in Qatar "The XY Sex Chromosome in Date Palm (Phoenix dactylifera): From Discovery and Mapping to Sequencing" (W660)

66


4:00pm - 6:10pm Tripal Database Network and Initiatives - CALIFORNIA Co-chairs: Stephen P Ficklin, Washington State University and Dorrie Main, Washington State University

4:00pm Stephen P Ficklin, Washington State University

"Tripal Overview & Future Developments" (W803)

4:30pm Lacey-Anne Sanderson, University of Saskatchewan "Extending Tripal for Specialized Display and Management of Diversity and Breeding Data" (W804)

5:00pm Sook Jung, Washington State University "GDR/CottonGen: Converting Legacy Sites to Tripal" (W805)

5:15pm Christopher Childers, USDA/Agricultural Resarch Service/National Agricultural Library "The i5k Workspace@Nal - a Tripal Based Arthropod Genome Portal" (W806)

5:30pm Vivek Krishnakumar, J Craig Venter Institute "Tripal within the Arabidopsis Information Portal (AIP)" (W807)

5:45pm Ethalinda Cannon, Iowa State University "Tripal within the Legumes Genomics Community" (W808)

6:00pm Margaret Staton, University of Tennessee Institute of Agriculture "The Hardwood Genomics Database: Current Status and Future Directions after Four Years of Development" (W809)

6:15pm - 7:00pm Plenary Talk - TOWN AND COUNTRY Chair: Hans Cheng, USDA, ARS, ADOL

6:15pm Philip Bourne, National Institutes of Health "NIH Data/Big Data – Implications for PAG"

7:00pm - 8:30pm Opening Reception - GRAND EXHIBIT HALL

67




8:00am - 9:30am Plenary Talks - TOWN AND COUNTRY Chair: David Grant, USDA-ARS-CICGRU and Iowa State University

8:00am Beth Shapiro, University of California Santa Cruz “The evolutionary consequences of interspecies hybridization: insights from ancient and modern bear genomes”

8:45am Trey Ideker, UC San Diego “Interpreting genome variants and mutations using a unified human genetic network”

9:30am - 11:30am Coffee Break - GRAND EXHIBIT HALL

9:30am - 5:00pm Exhibits & Posters Open - GRAND EXHIBIT HALL

10:00am - 11:30am Poster Session - Even Numbers - GRAND EXHIBIT HALL

11:30am - 3:00pm International Sheep Genome Consortium - TOWNE Chair: Noelle Cockett, Utah State University Co-Chair: James Kijas, CSIRO Agriculture Flagship

11:30am Welcome Remarks 11:35am Rudiger Brauning, AgResearch Ltd

"LD Chip: Design for Parentage, Imputation and Functional SNPs"

12:00pm Carole R Moreno, INRA "LD Chip: Design for Parentage, Imputation and Functional SNPs"

12:25pm Kim C Worley, Baylor College of Medicine "Improvement to OARv31 Using Long Read Technology"

12:55pm Alan L Archibald, The Roslin Institute and R(D)SVS, University of Edinburgh "Functional Annotation of Farm Animal Genomes (FAANG)"

1:25pm James Kijas, CSIRO Agriculture Flagship "SheepGenomesDB: Now and In the Future"

1:55pm Daniel G Bradley, Trinity College Dublin "Genome Sequencing from Historical Parchment"

2:10pm Matthew D Teasdale, Trinity College Dublin "Genome Sequencing from Historical Parchment"

2:25pm Shannon Clarke, AgResearch Ltd Invermay Agricultural Centre "Genotype By Sequencing (GBS)"

2:40pm Rudiger Brauning, AgResearch Ltd "Genotype By Sequencing (GBS)"

2:55pm Concluding Remarks 68



12:50pm - 3:00pm Genomics of Tissue Regeneration in Plants and Animals - ESQUIRE Organizer: Moshe Reuveni, ARO, Volcani Center

12:50pm Moshe Reuveni, ARO, Volcani Center

"Plant Regeneration Requires Cellular Communication" (W695)

1:10pm Ayelet Voskoboynik, Institute of Stem Cell Biology and Regenerative Medicine Stanford University

"Botryllus schlosseri, a Model Organism for the Study of Tissue Regeneration and the Evolution of Immunity" (W696)

1:30pm Kenneth D Birnbaum, New York University "The Trajectory of Transdifferentiating Cells in Root Regeneration" (W697)

1:50pm Vladimir Mashanov, University of Puerto Rico, Department of Biology "Transcriptomics of Neural Regeneration in Echinoderms: A Roadmap for Future Research" (W698)

12:50pm - 3:00pm Arabidopsis Information Portal & Intl Arabidopsis Informatics Consortium - PACIFIC SALON 6-7 (2ND FLOOR) Organizers: Christopher D Town, J Craig Venter Institute and Blake C Meyers, University of Delaware

12:50pm Eva Huala, Phoenix Bioinformatics "TAIR as a Model for Database Sustainability" (W043)

1:05pm Sean Tobias May, University of Nottingham "What's New at NASC?" (W042)

1:15pm Manpreet S Katari, New York University "Cross-Species Network Analysis Using VirtualPlant" (W039)

1:35pm Chia-Yi Cheng, J Craig Venter Institute "A Walk through the Araport Web Site"

1:55pm Marie Bolger, RWTH Aachen University "App Development within the MapMap Project"

2:15pm Justin Preece, Dept of Botany & Plant Pathology, Oregon State University "A Plant Ontology Web Service for the AIP"

2:35pm Jason R Miller, J Craig Venter Institute "Exposing Web Services for the Arabidopsis Information Portal" (W041)

2:55pm Matt Vaughn, Texas Advanced Computing Center "Developing Applications for the Arabidopsis Information Portal" (W040)

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12:50pm - 3:00pm Integrated Breeding Platform: Tools, Databases and Applications for Plant Breeding - ROYAL PALM SALON 4,5,6 Organizers: Graham McLaren, Generation Challenge Programme and Mark Sawkins, Generation Challenge Programme

12:50pm Graham McLaren, Generation Challenge Programme

"Overview and Progress on Developing the Integrated Breeding Platform" (W699)

1:10pm Mark Sawkins, Generation Challenge Programme "Breeding View - Statistical Workflows for Plant Breeding " (W700)

1:30pm Abhishek Rathore, ICRISAT "ISMU 20: A Multi-Algorithm Pipeline for Genomic Selection" (W701)

1:50pm Susan McCouch, Cornell University "CG Back Office : Working with IBP to Deliver High Density Genomics Tools" (W702)

2:10pm David E Matthews, USDA ARS "A Public API for Crop Breeding Data" (W703)

2:30pm Bao Lam Huynh, University of California - Riverside "Application of Information Systems in Collaborative Cowpea Breeding for Sub-Saharan Africa" (W704)

12:50pm - 3:00pm Grass Genome Initiative (IGGI) - SUNRISE Organizers: Jeffrey L Bennetzen, University of Georgia and Katrien M Devos, University of Georgia

12:50pm Kulvinder Gill, Washington State University

"Structure and Function of Ph1 Genes in Wheat and Other Cereals" (W384)

1:15pm Rajeev K Varshney, ICRISAT "A Reference Genome and HapMap for Pearl Millet (Pennisetum glaucum)" (W385)

1:40pm Jeffrey L Bennetzen, University of Georgia "Transposable Element Histories Across a Broad Sampling of Panicoid Grasses" (W386)

2:05pm Stephen Byrne, Molecular Biology and Genetics, Aarhus University "Exploring an Annotated Sequence Assembly of the Perennial Ryegrass Genome for Genomic Regions Enriched for Trait Associated Variants" (W387)

2:30pm Korbinian Schneeberger, Max Planck Institute for Plant Breeding Research "Co-Occurrence of Long-Lasting Retrotransposon Activity and Lack of Symmetric CG Methylation in the Genome of Arabis alpina" (W388)

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12:50pm - 3:00pm NCBI Genome Resources - SUNSET Organizers: Kim D Pruitt, National Center for Biotechnology Information (NCBI/NLM/NIH) and Tatiana Tatusova, National Center for Biotechnology Information (NCBI/NLM/NIH)

12:50pm Ilene Mizrachi, National Center for Biotechnology Information (NCBI/NLM/NIH)

"Improving the Flow of Data to National Center of Biotechnology Information Sequence Repositories, SRA and Genbank" (W452)

1:15pm Jennifer Lee, National Center for Biotechnology Information (NCBI/NLM/NIH) "Variation at NCBI: Resources, Tools and Submissions" (W453)

1:40pm Francoise Thibaud-Nissen, NCBI/NLM/NIH "Update on the Eukaryotic Genome Annotation Pipeline" (W454)

2:05pm Kim D Pruitt, National Center for Biotechnology Information (NCBI/NLM/NIH) "From Genes to Genomes – New Features and Data Access" (W455)

2:30pm Tatiana Tatusova, National Center for Biotechnology Information (NCBI/NLM/NIH) "Annual Report" (W456)

12:50pm - 3:00pm Plant Transgene Genetics - TOWN AND COUNTRY Organizers: Gan-Yuan Zhong, USDA-ARS GGRU and Bala Pudota, Dow AgroSciences LLC

12:50pm Robert M Stupar, Department of Agronomy and Plant Genetics, University of Minnesota "Comparison of Genomic Structural Variation Associated with Cultivars, Mutagenized, and Transgenic Soybean Plants" (W561)

1:10pm Isabelle M Henry, Plant Biology and Genome Center, UC Davis "Transient and Stable Heterologous Transgene Expression to Investigate the Mechanism of Sex Determination in Persimmon" (W562)

1:30pm Tom Clemente, University of Nebraska "Towards the Production of a Margarine Type Vegetable Oil in Soybean" (W563)

1:50pm Tristan Coram, Dow AgroSciences "In-Depth Characterization of Transgenic Events Carrying Targeted Insertions at the Maize ZmIPK1 Locus" (W564)

2:10pm Fredy Altpeter, University of Florida - IFAS "Transformation Efficiency, Transgene Integration Complexity and Expression Stability Following Biolistic or Agrobacterium-mediated Transformation of Sugarcane"

2:30pm Senthil Subramanian, South Dakota State University "MicroRNA Regulation of Auxin-Cytokinin Balance during Soybean Nodule Development" (W565)

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12:50pm - 3:00pm Computer Demo 2 - CALIFORNIA Organizers: Dave Clements, Johns Hopkins University and Brian Smith-White, National Center for Biotechnology Information (NCBI/NLM/NIH)

12:50pm Toby Hunt, Wellcome Trust Sanger Institute

"New Tools for Manual Genome Annotation in Eukaryotes: Zmap/Otterlace and Vega" (C08)

1:10pm Victoria Carollo Blake, USDA ARS WRRC "The Triticeae Toolbox (T3): From the Ground Up" (C09)

1:30pm Carson M Andorf, USDA-ARS "The Reinvention of MaizeGDB" (C10)

1:50pm Andrew D Farmer, National Center for Genome Resources "Methods for Collecting, Integrating, and Displaying Complex Genetic Data, Using the Legume Information System and PeanutBase" (C11)

2:10pm Hidemasa Bono, Database Center for Life Science "Facilitating the Use of Next-Gen Sequence Data for Data-Driven Biology" (C12)

2:30pm Sook Jung, Washington State University "How to Use GDR, the Genome Database for Rosaceae" (C13)

2:45pm Jing Yu, Washington State University "CottonGen: The Community Database for Cotton Genomics, Genetics and Breeding Research" (C14)

12:50pm - 3:00pm Affymetrix: Whole-genome analysis of diploid and polyploid species: expert-designed custom arrays for global applications - PACIFIC SALON 3 Organizer: Laurie Durlester, Affymetrix, Inc Chair: Shantanu Kaushikkar, Affymetrix Inc Affymetrix offers a suite of genomics tools that facilitate streamlined and user-friendly workflows, including assays, detection, and analysis Speakers at the Affymetrix workshop will be discussing their experiences with Axiom® Genotyping Arrays and GeneChip® Expression Arrays for analyzing diploid and polyploid plant and animal genomes

12:50pm Andrew Breakspear, John Innes Centre "The root hair ‘infectome’ of Medicago truncatula: secrets of hair removal"

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12:50pm - 3:00pm Thermo Fisher Scientific (Formerly Life Technologies™) - Genetic analysis approaches in agriculture biotechnology - GOLDEN WEST Organizer: Delaney Wermuth, Thermo Fisher Scientific As a member of the Thermo Fisher Scientific family of brands, Life Technologies™ products and services offer high-quality, innovative life science solutions for every plant and animal research or breeding lab Attend our workshop to learn how Ion AmpliSeq™ genotyping-by-sequencing and digital PCR solutions help address agricultural biotechnology challenges

12:50pm Jenny Xiao, Thermo Fisher Scientific

"Solutions for plant and animal research and breeding"

1:00pm Lex Flagel, Monsanto Company "The genetic architecture of western corn rootworm resistance to the Cry3Bb1 Bt protein"

1:30pm Eric Jackson, General Mills "The bulk allele discrimination (BAD) assay for plant genotyping: A case study in hexaploid oat"

2:00pm James C Schnable, University of Nebraska-Lincoln "Fast turn-around genotyping without a reference genome using the Hi-Q™ sequencing kit on the Ion Proton™ System"

2:30pm Li Song, University of Missouri "Application of digital PCR to analyzing transgenic soybeans"

12:50pm - 3:00pm GeneSeek - PACIFIC SALON 2 Organizer: Jermey Walker, GeneSeek Title: Next Generation Genomic Solutions for Agri-Research

12:50pm Jeremy Walker, GeneSeek "GeneSeek Custom Genotyping Solutions"

1:10pm Kurt Lamour, University of Tennessee "Monsterplex: a high capacity technology for targeted sequencing and large scale genotyping"

1:30pm David Douches, Michigan State University "The Contribution of the genome-wide SNPs to Potato Breeding and Genetics"

1:50pm Sofia Ortega, University of Florida

"Identification of candidate genes associated with reproduction in dairy cattle"

2:10pm Matt Hickenbotham, Thermo Fisher Scientific "Custom Genotype by Sequencing Panels Utilizing Ampliseq and Ion Torrent Technology"

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12:50pm - 3:00pm Keygene: From Leads to Seeds - ROYAL PALM SALON 1,2,3 Organizer: Fayaz Khazi, KeyGene Inc Chair: Fayaz Khazi, KeyGene Inc

The Food and Agriculture Organization estimates that 70% more food production over the next four decades is needed to nourish a human population projected to exceed 9 billion by the year 2050 Such a generational challenge cannot be met by traditional fragmented approaches to research and development Rather, an interdisciplinary and a more integrated, "Leads to Seeds" approach to agricultural is warranted to reach minimum metrics of global food security KeyGene's proprietary technology platforms in molecular breeding, its expertise in genomics, transcriptomics and digital phenotyping of diverse crops has positioned the company as a leader in the field Through its platforms and strategic collaborations with its industry partners, KeyGene seeks to enable expedited crop innovation and crop improvement Several examples of KeyGene's technologies will be showcased in support of the "Leads to Seeds" theme

12:50pm Michiel JT van Eijk, Keygene NV "KeyGene’s accelerated molecular breeding platform: the first decade of a sequence-based revolution"

1:10pm Rick Nipper, Floragenex "Past, Present and Future: Application of RAD-Seq and Sequenced Based Genotyping in Eggplant, Miscanthus and Barley"

1:30pm Anker Sørensen, KeyGene "Expedited Trait Development at KeyGene"

1:50pm Fayaz Khazi, KeyGene Inc "Digital Phenotyping 20 and Integrated Agriculture" 12:50pm - 3:00pm Kyazma's JoinMap and MapQTL Demonstration –

PACIFIC SALON 4-5 (2ND FLOOR) Organizer: Johan Van Ooijen, Kyazma BV Live demonstrations of the genetic mapping and QTL analysis software of Kyazma ®

• JoinMap ® 4·1 – Genetic mapping made easy • MapQTL ® 6 – User-friendly power in QTL analysis

12:50pm JoinMap 4·1 – General Demonstration 1:40pm JoinMap 5 – Very Early Preview 2:00pm MapQTL 6 – General Demonstration

12:50pm - 3:00pm New England Biolabs - Recent advances in NGS sample prep - PACIFIC SALON 1 Organizer: Kari Goodwin, New England Biolabs Title: Recent Advances in Sample Preparation for Next Generation Sequencing

12:50pm Introduction 1:00pm Jonathan Dennis, Florida State University

“The surprising organization of complex genomes”

1:40pm Daniela Munafo, New England Biolabs “Increasing Sensitivity of Next Generation Sequencing-based Transcriptome

Profiling by Selectively Depleting Abundant RNAs”

2:05pm Fiona Stewart, New England Biolabs “Improving NGS library prep workflow performance and flexibility with new product formulations and protocols”

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12:50pm - 3:00pm Roche Diagnostics Corporation - GOLDEN BALLROOM Organizer: Sabine Dierolf, Roche Applied Science Title: Applications of Target Enrichment in Diverse Plant and Animal Studies

This workshop will feature Roger Wiseman of the University of Wisconsin and his talk “Target capture and deep sequencing for characterization of the major histocompatibility complex in macaques” Several talks will be presented describing the use of custom target enrichment products to enable discovery in the sequencing of animals and plants Target enrichment is a flexible technology allowing the scientist to capture and sequence specific regions of interest Roche has design expertise with hundreds of organisms to enable further discovery in even unconventional genomes or those with missing or incomplete reference models.

3:00pm - 4:30pm Poster Session - Odd Numbers - GRAND EXHIBIT HALL

3:00pm - 5:00pm Coffee Break - GRAND EXHIBIT HALL

4:30pm - 6:30pm Brachypodium Community Organizational Meeting - SHEFFIELD Organizer: John Vogel, DOE Joint Genome Institute Please join us for an informal discussion of new resources and other developments relevant to the Brachypodium research community Topics will include a new collaborative project to sequence and characterize 2,000 chemical and radiation mutants, new tools for studying functionally redundant gene families, improvements to the reference genome, resequencing natural accessions, sequencing related species and T-DNA lines In addition, attendees are encouraged to discuss resources they are developing, challenges they have encountered and upcoming needs

5:00pm - 8:00pm International Goat Genome Consortium - SUNRISE Organizer: Gwenola Tosser-Klopp, INRA Co-Chair: Alessandra Stella, FPTP

5:00pm Gwenola Tosser-Klopp, INRA Introduction

5:10pm Steven G Schroeder, Animal Genomics and Improvement Laboratory, USDA-ARS "Progress on the Reassembly and Annotation of the Goat Genome" (W399)

5:30pm Ezequiel Luis Nicolazzi, Fondazione Parco Tecnologico Padano "ADAPTmap: A First Insight into Goat Adaptation" (W400)

5:50pm Marcel Amills, Center for Research in Agricultural Genomics "Analysing the Genetic Diversity of Domestic and Wild Goats in Spain" (W401)

6:10pm Khanyisile Mdladla, Agricultural Research Council "Population Structure and Breed Relations of South African Indigenous Goat Ecotypes Using Genome-Wide SNP Data" (W402)

6:30pm Céline Carillier, INRA UMR 1388 GenPhySE Toulouse "Toward Genomic Selection in French Dairy Goats" (W403)

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6:50pm Sylvain Foissac, INRA - GenPhySE

"FR-AgENCODE: A Pilot Project to Improve the Functional Annotation of Livestock Genomes" (W404)

7:10pm Gwenola Tosser-Klopp, INRA Conclusion / Discussion

6:10pm - 8:20pm “It’s not just the data, it’s the analysis” - Why a Biology Cyberinfrastructure is the Best Way to Meet the Challenges of Large Datasets - CALIFORNIA Organizer: Jason Williams, Cold Spring Harbor Laboratory

6:10pm Matthew Vaughn, Texas Advanced Computing Center, University of Texas "Overview of the iPlant Collaborative" (W425)

6:20pm Fiona McCarthy, University of Arizona "Functional Analysis of Your RNAseq Data" (W426)

6:35pm Sabarinath Subramaniam, University of Arizona "Flash Demo: Annotating genomes with MAKER-P and the iPlant Discovery Environment" (W427)

6:40pm Upendra Kumar Devisetty, University of California "A Hybrid Approach to Assemble and Annotate the Brassica rapa Transcriptome in the Cloud through the iPlant Collaborative and XSEDE" (W428)

7:00pm Kapeel Chougule, Cold Spring Harbor Laboratory "Flash Demo: Atmosphere Cloud Computing - Applied to Visualizing RNA-Seq Data" (W429)

7:05pm Donovan Bailey, New Mexico State University "Using iPlant Tools and Plastome Sequencing As a Springboard into Comparative Genomics: Plastome Organization and Sequence for the Mimosoid Legume Leucaena trichandra" (W430)

7:25pm Jeremy DeBarry, University of Arizona "Flash Demo: Secure, Collaborative, Management of Your Life Sciences Data with the Data Store" (W431)

7:30pm Andrew D Nelson, School of Plant Sciences, University of Arizona "Utilizing iPlant to Unearth Long Non-Coding RNAs and Characterize Their Evolution in the Plant Family Brassicaceae" (W432)

7:50pm Eva Huala, Phoenix Bioinformatics "Flash Talk: An Ontology Approach to Comparative Phenomics in Plants" (W433)

7:55pm Daniel B Taylor, Internet2 "Life Sciences Cyberinfrastructure at Your Fingertips: Using Internet2 to Power Scientific Collaboration" (W434)

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6:10pm - 8:20pm BGI: Omics-based Solutions for Agricultural Research & Development - SAN DIEGO

Organizer: Linda Lam, BGI Americas 6:10pm Xin Liu, BGI-Shenzhen

"Recent progress of plant and animal researches at BGI"

6:30pm Henry T Nguyen, University of Missouri & National Center for Soybean Biotechnology "Soybean Genome Diversity and Trait Discovery"

6:50pm Torben Asp, Molecular Biology and Genetics, Aarhus University "Population-Based Genotyping for Implementation of Genomic Selection in Outbreeding Crops: A Case Study in Perennial Ryegrass"

7:10pm L Augusto Becerra Lopez-Lavalle, International Center for Tropical Agriculture – CIAT "Revisiting cassava genetic diversity reveals eco-geographic signature of the crop’s domestication"

7:30pm Luhan Yang, Harvard Medical School "Application of Genome Engineering and CRISPR/Cas9 Technologies in Plant and Animal Breeding"

7:50pm Ying Sun, China National Genebank "1,000 Fish Transcriptome (Fish-T1K) Project -- Progress and Challenges"

6:10pm - 8:20pm DNAstar: Genomic and Transcriptomic Analysis with Lasergene: Case Studies and a Workflow - ROYAL PALM SALON 4,5,6 Organizer: Jackie Carville, DNAStar, Inc

6:10pm Brenda Oppert, USDA ARS Center for Grain & Animal Health Research "Expression of Genes Encoding Cuticular Proteins is Reduced by Beauveria bassiana Infection of Tribolium castaneum Larvae"

6:30pm Petr Tvrdik, HHMI/University of Utah "RNA-Seq Analysis for Mouse Geneticists"

6:50pm Matthew Keyser, DNASTAR, Inc "DNASTAR’s Lasergene Genomics Suite for RNA-Seq Alignment and Analysis "

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6:10pm - 8:20pm Maverix Biomics: Tails from the 99 Lives Companion Animal Genome Project - ROYAL PALM SALON 1,2,3 Organizer: Kelly Markiewicz, Maverix Biomics Resources to accelerate genomic research for companion animals are relatively limited compared to traditional model vertebrates. Maverix Biomics provides complete genomic and expression analysis services for animal researchers, including sequencing library preparation and ready-to-use computational analytic kits. In this workshop, we feature presentations on new variant analyses from the 99 Lives Cat Sequencing Project, as well as a gene expression study to characterize inflammation in dogs, each utilizing the Maverix Analytic Platform.

6:10pm Leslie A. Lyons, University of Missouri-Columbia “99 Lives Cat Sequencing - nearly half way there!” 6:40pm Jeff Brockman, Hills Pet Nutrition “Analysis of a Canine Model of Inflammation by RNAseq” 7:10pm Holly C. Beale, Maverix Biomics “The Knowable Cat: Genomic Regions with High-Confidence Genotypes” 7:40pm Todd M. Lowe, Maverix Biomics “NGS Data Analysis with Maverix Analytic Platform”

6:10pm - 8:20pm Ubiquitome - Field applications of qPCR - PACIFIC SALON 3 Organizer: Claire Ellana, Ubiquitome The Ubiquitome Freedom4 is leading the way in mobile qPCR, with a vast range of field applications possible. In conjunction with the launch of the product, Ubiquitome invited researches to apply for the Freedom For You Grants Program, designed to provide support for remote qPCR projects. Ten finalists were chosen to receive support in the form of Freedom4 qPCR reagents and consumables, project design consultation, and technical support including wet lab processing. From the ten finalists, three grant winners will each receive a free Freedom 4 qPCR system worth $25,000. Grant winners will be selected on the basis of scientific merit, originality and how meaningful to their work it will be to have the remote/field qPCR capabilities offered by the Freedom 4. In addition to discussing the Freedom4 and field applications for mobile qPCR, this workshop will announce the ten finalists of the competition and highlight some of the submissions.

6:10pm Jo-Ann Stanton, University of Otago “Field applications of qPCR”

6:10pm - 8:20pm Envirologix Inc - PACIFIC SALON 1 Organizer: Charity Hirst, EnviroLogix Inc

6:10pm Dan Schaffer, Envirologix Inc “Point-of-Need, 10 Minute, Quantitative DNA/RNA Amplification and Detection in the Palm of Your Hand – Plants, Animals, and Beyond”

7:00pm Breck Parker, Envirologix Inc “Point-of-Need, 10 Minute, Quantitative DNA/RNA Amplification and Detection in the Palm of Your Hand – Plants, Animals, and Beyond”


8:00pm - 10:00pm Fluidigm Hospitality Event - TIKI PAVILION TERRACE 78




8:00am - 9:30am Plenary Talks - TOWN AND COUNTRY Chair: Max F Rothschild, Iowa State University

8:00am Xuemei Chen, University of California "Small Regulatory RNAs"

8:45am Mike E Goddard, University of Melbourne ""The Evolution and Genetic Architecture of Complex Traits"

9:30am - 10:30am Coffee Break - GRAND EXHIBIT HALL

9:30am - 3:00pm Exhibits & Posters Open - GRAND EXHIBIT HALL

10:30am - 12:40pm Banana Genomics - PACIFIC SALON 6-7 (2ND FLOOR) Organizers: Mathieu Rouard, Bioversity International and Angélique D'hont, CIRAD, UMR AGAP

10:30am Xiyin Wang, Plant Genome Mapping Laboratory, University of Georgia

"Banana Genome Contributes to Understand Grass Chromosome Number Reduction and Genome Repatterning Mechanism" (W050)

10:50am Sebastien C Carpentier, KULeuven "Towards a Better Genome Annotation of Different Musa Cultivars Using mRNA Seq and Proteomics Data: The Search for Allelic Variants Related to Drought" (W051)

11:10am Pat Heslop-Harrison, University of Leicester "Transposable Elements and Their Evolution in Musa" (W052)

11:30am Allen Van Deynze, Seed Biotechnology Center, University of California "The African Orphan Crops Consortium, an Uncommon Collaboration to Develop Plantain and Banana" (W053)

11:50am Leena Tripahti, International Institute of Tropical Agriculture "Field Trial of Xanthomonas Wilt Disease-Resistant GM Bananas in East Africa" (W054)

12:10pm Angélique D'hont, CIRAD, UMR AGAP "Updates on the Musa acuminata Reference Genome Sequence" (W055)

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10:30am - 12:40pm Bioinformatics - GOLDEN WEST Organizers: Tatiana Tatusova, National Center for Biotechnology Information (NCBI/NLM/NIH) and Aleksey Zimin, Institute for Physical Science and Technology, University of Maryland

10:30am Michael Schatz, Cold Spring Harbor Laboratory

"Perfect Long Read Assembly and the Rise of Pan-Genomics" (W069)

10:50am Sergey Koren, National Biodefense Analysis and Countermeasures Center "Efficient Assembly of Large Genomes Using Single-Molecule Sequencing and Locality Sensitive Hashing" (W070)

11:10am Iain MacCallum, Broad Institute "Rapid De Novo Assembly and Visualization of Plant and Animal Genomes Using Single-Library, PCR-Free, 250-Base Illumina Reads" (W071)

11:30am Mark Borodovsky, Georgia Institute of Technology "What Gene Prediction in Transcriptomes, Metatranscrptomes, Metagenomes, and Microbial Genomes has in Common" (W072)

11:50am Ana Conesa, Centro de Investigación Príncipe Felipe "The Stategra Initiative Develops Novel Methodologies for the Integrative Analysis of Multiple Types of NGS & Omics Data" (W073)

12:10pm Alyona Kryschenko, University of Southern California "Nonparametric Methods for Prediction and Analysis of Promoters in Model Organisms" (W074)

10:30am - 12:40pm Brachypodium Genomics - PACIFIC SALON 2 Organizer: David Garvin, USDA-ARS, PSRU

10:30am Deborah Petrik, Illinois State University and DOE Great Lakes Bioenergy Research Center

"PMT, a Grass-Specific Acyltransferase Involved in Lignin Biosynthesis" (W075)

10:50am Devin O'Connor, Sainsbury Laboratory, Cambridge University "Arabidopsis Lost Its Sister: Why Brachypodium Is a Better Model to Study PIN-Mediated Auxin Transport in the Shoot" (W076)

11:10am Malia Gehan, Donald Danforth Plant Science Center "High-Throughput Phenotyping of Brachypodium distachyon under Progressive Drought and Heat Stress" (W077)

11:30am Scott J Lee, Biology Department, University of Massachusetts "Examining Flowering Time in the Grasses: Population Structure and Genome-Wide Association Mapping in Brachypodium distachyon" (W078)

11:50am Ulrich Mueller, University of Texas at Austin "Efficient Evolution of Growth-Promoting Bacterial Rhizosphere Communities through Plant-Microbiome Co-Propagation" (W079)

12:10pm Melania Figueroa, University of Minnesota "The Brachypodium-Puccinia graminis System: Solving a Puzzle to Uncover the Underlying Mechanisms of Non-Host Resistance and Plant Immunity" (W080)

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10:30am - 12:40pm Genomics-Assisted Breeding - TOWN AND COUNTRY Organizer: Rajeev K Varshney, ICRISAT

10:30am Rajeev K Varshney, ICRISAT

"Welcome & Introduction" (W341)

10:35am Etienne Paux, INRA GDEC "High Throughput SNP Discovery and Genotyping in Hexaploid Wheat" (W342)

10:55am Richard Michelmore, Genome Center, University of California "The Influenza Paradigm for Resistance Gene Deployment in Lettuce" (W343)

11:15am Andreas Graner, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) "Genetic Dissection of Biomass Development in Barley" (W344)

11:35am Patrick S Schnable, Department of Agronomy, Iowa State University "Identification and Cross-Validation of Trait-Associated SNPs Provide Insights into Heterosis" (W345)

11:55am Herman De Beukelaer, Ghent University "Heuristic Exploitation of Genetic Structure in Marker-Assisted Gene Pyramiding Problems" (W346)

12:15pm Jianming Yu, Department of Agronomy, Iowa State University "Novel Strategies in Integrating Genomic Selection into the Broad Genomics-Assisted Breeding Framework" (W347)

12:35pm Rajeev K Varshney, ICRISAT Summary & Wrap-up

10:30am - 12:40pm Int'l Phytomedomics and Nutriomics Consortium (ICPN) - ROYAL PALM SALON 4,5,6

Organizer: Phullara Kole, C Kole Foundation for Science and Society Co-Chair: Chittaranjan Kole, Bidhan Chandra Agricultural University

10:30am Yong Pyo Lim, Chungnam National University "Genetics Meets Nutriomics: Genomic-Assisted Marker Development for Nutritional Quantitative Traits" (W412)

10:45am Amit Dhingra, Department of Horticulture, Washington State University "Transcriptomics Approach to Understand Differences in Phytonutrient Composition in Plants Grown Under Different Production Systems" (W413)

11:00am Li Li, USDA-ARS/Cornell University "Genetic Variation for High Beta-Carotene Accumulation in Crops" (W414)

11:15am Nitin Mantri, RMIT University "Development and Use of Novel Subtracted Diversity Array for Fingerprinting Medicinal Plants" (W415)

11:30am David W Still, Cal Poly Pomona "Breeding Lettuce to Maximize Nutrional Content Across Diverse Environments" (W416)

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10:30am - 12:40pm Proteomics - PACIFIC SALON 3 Organizers: Madan K Bhattacharyya, Iowa State University and Michael A Djordjevic, Australian National University

10:30am SP Dinesh-Kumar, The Genome Center, University of California Davis,

"Protein Microarray Platform for Pathogen Effectors Studies and Beyond" (W613)

10:50am Paul A Haynes, Macquarie University "Proteomic Analysis of Abiotic Stress in Grapevines" (W614)

11:10am Xiao-Ning Zhang, St Bonaventure University "Phosphor-Regulation Induced Pre-mRNA Splicing via a Splicing Activator, SR45, during Flower Development" (W616)

11:30am Ann E Blechl, USDA-ARS "Using Proteomics in Transgenic Wheat to Assess the Effects of an RNA Interference Construct that Targets a Family of Seed Storage Proteins" (W617)

11:50am Mingxun Wang, University of California - San Diego "GNPS - a Preview of the Future of Community Wide Collaboration and the Power of Social Networking in Mass Spectrometry" (W618)

12:10pm Sebastien C Carpentier, KULeuven "Drought Stress Research in Crops Using -Omics Approaches: mRNA Seq and Proteomics in the Spot Light" (W615)

10:30am - 12:40pm Rice Functional Genomics - SUNSET Organizers: Mingsheng Chen, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , Guo-Liang Wang, The Ohio State University and Hironori Itoh, National Institute of Agrobiological Sciences

10:30am Rod A Wing, Arizona Genomics Institute, University of Arizona "Evolution of the Collective Oryza Genome: Development and Analysis of a Genus-Wide Genome Biology Platform to Help Solve the 9-Billion People Question " (W637)

10:50am Kenneth L McNally, The International Rice Research Institute "SNP-Seek: 3000 Rice Genomes for Allele Discovery" (W638)

11:10am Yonghong Wang, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences

"The Roles of Strigoalctones in the Control of Rice Tillering" (W639)

11:30am Takashige Ishii, Kobe University "A Closed Panicle Regulated by OsLG1 was a Selected Trait during Rice Domestication" (W640)

11:50am Yinong Yang, Pennsylvania State University "Direct Regulation of a Mitogen-Activated Protein Kinase By a Plasma Membrane-Associated Calcium-Dependent Protein Kinase in Rice" (W641)

12:10pm Song Ge, Institute of Botany, CAS "Insights into the Role of Differential Gene Expression on Species Origin: A Case Study on Wild Rice" (W642)

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10:30am - 12:40pm SGN Workshop: Solanaceae Genomes and Breeder Tools - TOWNE Organizers: Isaak Y Tecle, Boyce Thompson Institute for Plant Research and Lukas Mueller, Boyce Thompson Institute for Plant Research

10:30am Lukas Mueller, Boyce Thompson Institute for Plant Research

Introduction

10:35am Lukas Mueller, Boyce Thompson Institute for Plant Research "Breeder Tools" (W662)

10:55am Isaak Y Tecle, Boyce Thompson Institute for Plant Research "solGS: A Web-Based Tool for Genomic Selection" (W663)

11:15am Susan R Strickler, Boyce Thompson Institute for Plant Research "Accessing SGN Genomes through Tools" (W664)

11:35am Surya Saha, Boyce Thompson Institute, Cornell University "Tomato Genome Assembly: SL250 and Beyond" (W665)

10:30am - 12:40pm Soybean Genomics - ROYAL PALM SALON 1,2,3 Organizer: Suk-Ha Lee, Seoul National University

10:30am Matthew E Hudson, University of Illinois "Highly Variable Regions in the Soybean Genome" (W689)

10:55am Yong-Qiang (Charles) An, USDA-ARS, Plant Genetics Research at Donald Danforth Plant Science Center

"Exploring and Exploiting Soybean Seed Transcriptome Diversity" (W690)

11:20am Zhixi Tian, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences

"Comprehensive Genomic Survey of Genes Related to Domestication and Improvement in Soybeans" (W691)

11:45am Soon-Chun Jeong, Korea Research Institute of Bioscience and Biotechnology "Genetic Analysis of Genomic Locations Underlying Domestication Transitions in Soybean" (W692)

12:10pm Jieqing Ping, Purdue University "Evolutionary Novelty of Duplicates: Insights from a Case Study of Soybean Stem Growth Habit" (W693)

12:35pm Osman Radwan, University of Illinois at Urbana-Champaign "Molecular Characterization of Transgenic Soybean Overexpressing the GM-RLK3" (W694)

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10:30am - 12:40pm Synthetic Biology - PACIFIC SALON 1 Organizer: Elibio Rech, EMBRAPA

10:30am Fredy Altpeter, University of Florida - IFAS

"Precision Genome and Metabolic Engineering for Genetic Improvement of the Biofuel Feedstock Sugarcane" (W771)

10:46am Julie Robinson, Synthetic Genomics "Take Control of Your Gene Construction Projects with the BioXP™ 3200 System" ( W772)

11:02am Alison K Huttly, Rothamsted Research "Comprehensive Suite of Vectors Suitable for Wheat Transformation" (W773)

11:18am Samuel M D Seaver, Argonne National Laboratory "The Plantseed Resource for Functional Annotation and Cross-Kingdom Comparative Genomics of Plant Genomes" (W774)

11:34am Mariana de Souza e Silva, ESALQ/USP "Metabolic Fingerprinting of Contaminant Microorganisms Present in the Fermentative Process of Ethanol" (W775)

11:50am Sushma Naithani, Department of Botany & Plant Pathology, Oregon State University "VitisCyc: A Metabolic Pathway Knowledgebase for Grape (Vitis vinifera)" (W776)

12:06pm Yue-ie C Hsing, Institute Plant and Microbial Biology, Academia Sinica, "Comparison of Sequence Changes in Rice Regenerants and Transformants" (W777)

10:30am - 12:40pm Systems Genomics - SUNRISE Organizers: Hong-Bin Zhang, Texas A&M University and Meiping Zhang, Texas A&M University

10:30am Md Shakhawat Hossain, University of Missouri "Soybean Root Hair, a Single Cell Model to Study Plant-Microbe Interactions, Abiotic Stress and Epigenetic Regulation" (W784)

10:50am Huaijun Zhou, University of California "Systems Biology Analysis of Mechanism of Host Response to Avian Influenza Virus Infection in Two Genetically Distinct Chicken Inbred Lines" (W785)

11:10am Yun-Hua Liu, Texas A&M University "The Molecular Mechanisms of Crop Quality: Cloning and Systems Analysis of 474 Genes Controlling Fiber Length in Cotton, Gossypium hirsutum L and G barbadense L" (W786)

11:30am Nicolas Langlade, INRA LIPM "Bridging Physiological and Evolutionary Time Scales in a Gene Regulatory Network" (W787)

11:50am Steven Briggs, University of California, San Diego "Complementary Regulatory Networks Enabled By Parallel Transcriptome and Proteome Dynamics" (W788)

12:10pm C Neal Stewart Jr, Department of Plant Sciences, University of Tennessee "Draft Genome of Horseweed Illuminates Expansion of Gene Families That Might Endow Herbicide Resistance" (W789)

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10:30am - 12:40pm Computer Demo 3 - CALIFORNIA Organizers: Dave Clements, Johns Hopkins University and Brian Smith-White, National Center for Biotechnology Information (NCBI/NLM/NIH)

10:30am Delphine Steinbach, INRA - URGI

"GnpIS-Asso : A Generic Database for Managing and Exploiting Plant Genetic Association Studies Results Using High Throughput Genotyping and Phenotyping Data" (C15)

10:45am Xinbin Dai, The Samuel Roberts Noble Foundation "HRGRN: A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks" (C16)

11:00am Thomas Letellier, INRA - URGI "Wheat3BMine, a Data Warehouse Dedicated to Wheat Chromosome 3B" (C17)

11:15am Hans Vasquez-Gross, Department of Plant Sciences, University of California, Davis "Using the Wheat Tilling Database to Search Mutants of Interest" (C18)

11:30am Emily Grau, UC Davis "TreeGenes and CartograTree: Tools for Forest Tree Genomics" (C19)

11:45am Patrick Xuechun Zhao, The Samuel Roberts Noble Foundation "LegumeIP - an Integrative Platform to Study Gene Function and Genome Evolution in Legumes: Year 3 Update" (C20)

12:00pm Brian Smith-White, National Center for Biotechnology Information (NCBI/NLM/NIH) "National Center for Biotechnology Information Resources for Plant Genomics" (C21)

12:15pm Nirav Merchant, iPlant Collaborative/University of Arizona "Manage Complex Computations Using Clouds and Containers in iPlant Atmosphere" (C22)

12:30pm Jason R Miller, J Craig Venter Institute "Using the Arabidopsis Information Portal" (C23)

10:30am - 12:40pm Cultivating Broader Impact Programs: Developing and Executing a Successful Program for Current and Future Grants - ESQUIRE Organizer: Michael D Gonzales, SoyMapII/University of Georgia Chair: Diane Jofuku Okamuro, National Science Foundation

10:30am Introductory Remarks 10:35am Success Stories/Lessons Learned 10:36am Ketia Shumaker, The University of West Alabama

"Bridging the Gap with Undergraduate Internships: Pennsylvania State University's Hardwood Genomics Outreach Component with the University of West Alabama" (W210)

10:51am Michael D Gonzales, University of Georgia "SOYMAP II: Nurturing Successful Relationships that Highlight Plant Research, Cultural Diversity and Collaboration" (W211)

11:06am Tools for Cultivating a Successful Program 11:36am Measuring the Impact 12:06pm Diane Jofuku Okamuro, National Science Foundation

"Perspectives on Broader Impacts"

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10:30am - 12:40pm NRGene - The Fast Track from Genome to Traits Discovery - PACIFIC SALON 4-5 (2ND FLOOR) Organizer: Moran Ressler, NRGene Chair: Gil Ronen, NRGene

Elucidating intra-species variability by denovo assembly of complex genomes The advance of Next-Generation-Sequencing (NGS) technologies have enabled the sequencing of large populations of plants, some of which have very complex and sometimes polyploid genomes However, the lack of adequate analysis tools for that data is still a major barrier for the research of those crops After years of research, NRGene has developed GenoMAGIC, a novel computational platform that analyzes large and diverse populations of the most complex plant genomes, helping researchers and breeders to correlate genetic sequence with information about plant performance The workshop will feature several presentations in which leading researchers of maize, wheat, and vegetables will describe the results of whole genome analysis projects, and how they used GenoMAGIC to elucidate the complexity of their population of interest Each talk will demonstrate a specific use of the GenoMAGIC platform together with phenotypic information, to reach exciting new genetic understating on the desired traits, and practical use in advanced breeding

10:30am Fei Lu, Institute for Genomic Diversity, Cornell University "Assembling Maize Inbred CML247: The Maize Pan-Genome Takes Off"

10:55am Assaf Distelfeld, Tel-Aviv University "Towards Functional Durum Wheat Genome Assembly"

11:20am Nurit Katzir, Agricultural Research Organization (ARO) "Ultra-High Resolution QTL Mapping of Fruit Quality Traits in Melon"

11:45am Alvaro G Hernandez, Roy J Carver Biotechnology Center and University of Illinois at Urbana-Champaign

"New Approaches for sequencing complex plant genomes for de novo assembly"

12:10pm Guy Kol, NRGENE LTD and NRGENE Ltd "Unraveling the maize genome diversity by comparing several de-novo assembled maize genomes"


1:30pm - 3:40pm Leveraging Genomics Tools to Accelerate Breeding for Climate Resilience - PACIFIC SALON 6-7 (2ND FLOOR) Organizers: Nora Lapitan, US Agency for International Development and Lindsay Parish, US Agency for International Development

1:30pm Timothy J Close, University of California "Cowpea: Putting Genomics into Practice for Food Security" (W705)

1:55pm Raman Babu, Centro International de Mejoramiento de Maiz y Trigo (CIMMYT) "Genomics-Assisted Breeding for Climate Resilience in Tropical Maize" (W706)

2:20pm Eduardo Blumwald, University of California-Davis "Engineering Drought Tolerance in Grain Crops" (W707)

2:45pm Huaijun Zhou, University of California "Improving Food Security in Africa By Enhancing Resistance to Newcastle Disease and Heat Stress in Chickens: Genomics to Improve Poultry" (W708)

3:10pm Kevin R Hayes, Pioneer Hi-Bred International "Genomics Data Management: A Global Perspective" (W709)

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1:30pm - 3:40pm Animal Epigenetics - ROYAL PALM SALON 4,5,6 Organizers: Hasan Khatib, University of Wisconsin Madison and Erdogan Memili, Mississippi State University

1:30pm Christine Couldrey, AgResearch Ltd Ruakura "Integrating DNA Methylation with other 'Omics Data Sets for Prediction of Meat Tenderness in Sheep" (W020)

1:50pm Jenna Kropp, University of Wisconsin "Non-Invasive Biomarkers of Embryo Development in Cattle" (W021)

2:10pm Erdogan Memili, Mississippi State University "Paternal Epigenetic Mechanisms Regulate Male Fertility and Early Development in Mammals" (W022)

2:30pm Mike E Goddard, Biosciences Research Division, DPI "Genetic Architecture and Evolution of Complex Traits" (W023)

2:50pm Jiuzhou Song, University of Maryland "Dynamic Chromatin Modifications and Tissue-Specific Marks of Mdv Infection in Inbred Chicken Lines" (W024)

1:30pm - 3:40pm Compositae - PACIFIC SALON 4-5 (2ND FLOOR) Organizers: John M Burke, Department of Plant Biology, University of Georgia and Richard Michelmore, Genome Center, University of California

1:30pm S Evan Staton, University of British Columbia "Transposable Elements Drive Lineage-Specific Patterns of Genome Expansion and Turnover in the Asteraceae" (W173)

1:50pm Dean Lavelle, Genome Center, University of California "Associating Phenotype to Genotype in Lettuce Using NGS, in silico Analyses, High Resolution Genetic Maps and Targeted Fine Mapping" (W174)

2:10pm Sebastien Renaut, Université de Montréal "The Accumulation of Deleterious Mutations As a Consequence of Domestication and Improvement in Sunflowers" (W175)

2:30pm Marieke Jeuken, Plant Breeding, Wageningen University & Research "Survey of Reproductive Barriers in an Interspecific Lettuce Hybrid" (W176)

2:50pm Daniel Ilut, Cornell University "Developing Guayule (Parthenium argentatum A Gray) as a Commercial Source of Natural Rubber: Germplasm Characterization, Genotyping, and Genome Sequencing" (W177)

3:10pm Simon Hiscock, University of Bristol "Changes to Genome, Epigenome and Transcriptome during Hybrid Speciation: Insights from the Senecio Genome Project" (W178)

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1:30pm - 3:40pm Gramene Project - CALIFORNIA Organizers: Doreen Ware, Cold Spring Harbor Laboratory/USDA-ARS and Marcela Karey Monaco, Cold Spring Harbor Laboratory

1:30pm Joshua Stein, Cold Spring Harbor Laboratory

"Browsing and Comparing Genomes Using the Gramene/Ensembl Plants Browser" (W373)

1:50pm Paul J Kersey, EMBL - The European Bioinformatics Institute "Programmatic Interfaces to Plant Genomic Data" (W374)

2:10pm Justin Preece, Dept of Botany & Plant Pathology, Oregon State University "Plant Reactome: A Resource for Plant Metabolic and Regulatory Pathways" (W375)

2:30pm Robert Petryszak, EMBL - The European Bioinformatics Institute "Expression Atlas - a New Resource for Baseline and Differential Gene Expression for Crop Plants" (W376)

2:50pm Sushma Naithani, Department of Botany & Plant Pathology, Oregon State University "Hands-on Session: Upload, Display and Analyze Your Data on the Gramene/Ensembl Genome Browser" (W377)

1:30pm - 3:40pm Weedy and Invasive Plant Genomics - ESQUIRE Organizers: C Neal Stewart Jr, Department of Plant Sciences, University of Tennessee and Patrick Tranel, University of Illinois

1:30pm Kathryn A Hodgins, Monash University "The Genetics of Adaptation in an Invasive Plant (Ambrosia artemisiifolia)" (W824)

1:50pm Stephen I Wright, University of Toronto "Polyploid Origins and the Genomics of Adaptation in the Worldwide Weed Capsella bursa-pastoris" (W825)

2:10pm Gyoungju Nah, Seoul National University "Uncovering Differential Molecular Basis of Adaptive Diversity in Echinochloa Transcriptomes" (W826)

2:30pm Wenqian Kong, University of Georgia "Genetics of Weediness in Sorghum halepense" (W827)

2:50pm Amy Lawton-Rauh, Clemson University "Divergence Population Genetics of De-Domestication in California Weedy Rice (Oryza sp)" (W828)

3:10pm Niranjan Baisakh, Louisiana State University Agricultural Center "Looking at the Bright Side of an Invasive Species: Spartina alterniflora from an Abiotic Stress Tolerance Perspective" (W829)

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1:30pm - 3:40pm Qiagen - Agrigenomics Software Tools From Qiagen Bioinformatics - ROYAL PALM SALON 1,2,3

Organizer: Anja Lykkebak, CLC Bio Join us for cake and scientific discoveries, where researchers will present their latest discoveries using CLC Genomics Workbench, Server, and Microbial Genome Finishing Module

1:30pm Marta Matvienko, CLC bio "Update on Tools and Workflows in CLC Genomics Workbench and Server"

2:00pm Alexander Kozik, Genome Center, University of California "High Resolution Detection of Recombination Events in RILs by Genomic Shotgun Sequencing at Low Coverage"

2:30pm Gustavo Rodriguez-Alonso, Instituto de Biotecnología, UNAM "Root Transcriptome of the Pachycereus pringlei, a Sonoran Desert Cactus with Determinate Growth of the Primary Root - Pachycereus pringlei"

This work was supported by UNAM-DGAPA-PAPIIT (IN204912)

1:30pm - 3:40pm Lucigen - Closing and Finishing Genomes and BACs with Long Span NGS Reads - PACIFIC SALON 1 Organizer: Curtis Knox, Lucigen Corporation Lucigen’s long span NGS read technology is capable of generating mate pair sequencing reads that span 50 Kb in length, enabling de novo genome assemble, closure and finishing on the Illumina or Ion Torrent platforms User defined 2-8 Kb mate pair (MP) or 10-25 Kb MP libraries can be produced with bead based or gel purification protocols, and a novel fosmid based approach generates 35-50 Kb MP libraries This workshop introduces a new tool for long span NGS reads, with presentations demonstrating the efficient assembly, closing and finishing of genomes and BACs

1:30pm Curtis Knox, Lucigen Corporation "Introduction to Lucigen's Long Span NGS Read Technology"

1:45pm Robert R Klein, USDA-ARS, Southern Plains Agricultural Research Center "Closing and Finishing the Mitochondrial and Chloroplast Genomes of Sorghum Male-sterile A1 Cytoplasm using Long Span NGS Read Technology"

2:10pm Kankshita Swaminathan, Energy Biosciences Institute "Construction and analysis of a Miscanthus sinensis gene space assembly"

2:35pm Miroslav Valarik, Institute of Experimental Botany "Mate Pair Libraries for Enhancing Wheat BAC Assemblies"

3:00pm David Mead, Lucigen Corporation "100 Kb Long Span Reads and Beyond"

1:30pm - 3:40pm BioNano Genomics - SUNRISE Organizer: Kim Maibaum, BioNano Genomics

1:30pm Gabino F Sanchez Perez, Plant Research International, Wageningen University "Bridging the Gap between Micro and Macro: Genetic and Structural Variation in the Tomato Clade"

1:50pm Bin LIU, Ceter of Systematic Genomics, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences

"Towards a High-standard Reference Genome of Horses With Whole Genome Physical Mapping and Integration of Genome Sequences"

2:10pm Ryo Koyanagi, Okinawa Institute of Science and Technology "Exploring Metazoan Evolution with Genome Maps"

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1:30pm - 3:40pm Fluidigm - SUNSET Organizer: Tammy Kim, Fluidigm Corporation Title: Painlessly moving from STRs to SNPs and genotyping by sequencing (GBS) to speed up wildlife monitoring and crop development Switching away from microsatellites can be difficult and painful, but it doesn’t have to hurt. Automated tools to genotype hundreds of samples across all of your SNPs generate results faster and more easily. Learn how to move off of STRs with ease for crop management, breeding and wildlife monitoring.

1:30pm Sheina Sim, Researcher, USDA-ARS, Hilo, Hawaii “A low-cost and high-throughput approach for phylogenomics: Resolving evolutionary relationships between recently diverged species”

2:10pm Robert Kraus, University of Konstanz “A wolf SNP marker panel optimized for non-invasive samples based on the Fluidigm SNP genotyping IFC.”

2:50pm Marie Lee, Applications Scientist, Fluidigm “Quick and easy genotyping of difficult and limited samples in agbio applications.”

1:30pm - 3:40pm Kapa Biosystems' From Pathogens to Produce: Genomic advances using WGS, RNA-Seq, and PCR - TOWNE Organizer: Michelle Coombs, Kapa Biosystems Kapa Biosystems is proud to sponsor a corporate workshop with an array of industry thought leaders discussing their research using the latest Kapa products This workshop will cover: food-borne pathogen detection using microbial WGS; marker-assisted selection in apple using high-throughput PCR; and transcriptome analysis of microalgae to determine maximum lipid production for biofuels using RNA-Seq Kapa Biosystems is a life science reagents supplier that utilizes proprietary, directed-evolution technologies to optimize enzymes for PCR, real-time PCR, and next-generation sequencing applications Kapa’s portfolio of best-in-class products confers significant performance advantages when compared to traditional wild-type enzymes To learn more and receive a free t-shirt, stop by booth 324 in the Grand Exhibit hall

1:30pm Riccardo Velasco, Fondazione E Mach

"A Cost-Effective Strategy for Marker-Assisted Selection (MAS) in Apple (M pumila Mill): The Experience from the Edmund Mach Foundation Program for Resistance and Quality Traits"

1:50pm Chia-Lin Wei, DOE Joint Genome Institute "System-Wide Transcriptome Analysis Delineate Lipid Regulatory Pathways in Microalgae"

2:10pm Bart C Weimer, University of California, Davis "Large-Scale Microbial Genomics and Host/Microbe Interactions"

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1:30pm - 3:40pm LGC symposium 2 - Genomic solutions to meet agriculture’s future challenges today - PACIFIC SALON 2 Organizer: Bonnie Alvarado, LGC LGC is involved with varied projects around the world to improve crops needed to feed the developing world The International Maize and Wheat Improvement Center (CIMMYT) and the International Crops Research Institute for the Semi-Arid Tropics (ICRISAT) are two such projects that have been hugely successful This is not only in providing a growing knowledge base for breeders and plant geneticists to improve cereal crops such as wheat and maize but also in applying this knowledge to meet agricultures continuing and future challenges Our speakers Dr Sarah Hearne (CIMMYT) and Dr Babu Raman (CIMMYT & ICRISAT) will talk about how their projects are influencing crop improvement globally They explain how adopting molecular breeding techniques to locate markers for specific traits has quickly boosted efforts to improve food staples as well as adapting them to harsh environments The final speaker Dr Dietrich Koester (LGC Genomics, Nucleic Acid Purification Product Manager) will talk about tailor-made DNA extraction methods for agriculture and livestock He has a wealth of extraction experience with optimising chemistries for difficult to extract plant materials as well as optimising different extraction technologies for livestock breeding applications He will explain how it is possible to optimise for challenging projects so that DNA is not the limiting factor

1:30pm Mark Sawkins, Generation Challenge Programme

"Accessing genotyping services for crop improvement in developing countries The Generation Challenge Program (GCP) experience"

1:50pm Sarah Hearne, CIMMYT International Maize and Wheat Improvement Center "KASP Pipeline for Quality Data; Sampling to Data"

2:10pm Raman Babu, Centro International de Mejoramiento de Maiz y Trigo (CIMMYT) "KASP Pipeline for Quality Data; Sampling to Data"

2:30pm Dietrich Koester, LGC “LGC’s world of DNA extractions – tailor-made solutions for plant and livestock samples”"

1:30pm - 3:40pm Pacific Biosciences: Expanding Our Understanding of Complex Genomes with SMRT® Sequencing - SAN DIEGO Organizer: Wendy Weise, Pacific Biosciences Chair: Marty Badgett, Pacific Biosciences

1:30pm Marty Badgett, Pacific Biosciences "PacBio Latest Developments & Grant Program"

1:45pm Robert VanBuren, Danforth Plant Science Center "De novo assembly of a complex panicoid grass genome using ultra-long PacBio reads with P6/C4 chemistry"

2:10pm Susan R Strickler, Boyce Thompson Institute for Plant Research "Genome assembly strategies of the recent polyploid, coffea arabica"

2:35pm Timothy PL Smith, USDA-ARS, US Meat Animal Research Center "A genome assembly of the domestic goat from 70x coverage of single molecule, real-time sequence"

3:00pm Michiel van Eijk, KeyGene "Genome assembly and Iso-Seq transcriptome sequencing of tetraploid cotton"

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1:30pm - 3:40pm IBM - Accelerating Genomics Research using an Integrated High Performance Computing Solution - GOLDEN WEST Organizer: Peter Basmajian, IBM Advancements in genomics research pose challenges for IT leaders, researchers and developers to analyze, manage, share and store large scale data with greater efficiency at lower cost High-performance best practices in computing and storage solutions are required to process the data produced efficiently The genomics pipeline workflow must be optimized using workload management software in order to fully utilize the available resources Data that is used less often must be archived so that it is stored cost effectively, but still be easily available We will discuss compute and data challenges, the latest IBM architecture for a high performing genomics research platform and real-world strategies adopted by leading genomic research institutes for large scale data projects

12:00am Kathy Tzeng, IBM "Accelerating Genomics Research Using an Integrated High Performance Computing Solution"

1:30pm - 6:10pm IWGSC - Standards and Protocols - PACIFIC SALON 3 Organizers: Jane Rogers, International Wheat Genome Sequencing Consortium and Catherine Feuillet, Bayer CropScience

1:30pm Hana Simkova, Institute of Experimental Botany

"Improving the Physical Map and Sequence of the 7DS with a BioNano Map" (W417)

1:50pm Gabriel Keeble-Gagnere, Murdoch University "Reference Assembly of Chromosome 7A as a Platform to Study Regions of Agronomic Importance" (W418)

2:10pm Valerie Barbe, CEA - Genoscope "Chromosome 1B: A Step Further in the Sequencing of the Hexaploid Wheat Genome" (W419)

2:30pm Ming-Cheng Luo, Department of Plant Sciences, University of California "BioNano Genome Map to Facilitate the Assembly of the Aegilops tauschii Genome" (W420)

2:50pm Abraham B Korol, Institute of Evolution, University of Haifa "Using LTC Software for Physical Mapping and Assisting in Sequence Assembly" (W421)

3:10pm Andrew G Sharpe, National Research Council Canada "Progress in Sequencing and Scaffolding Chromosome 1A" (W422)

3:30pm Vijay K Tiwari, Kansas State University "Application of RH Mapping in Wheat Genome Analysis" (W423)

3:50pm Michael Alaux, INRA - URGI "IWGSC Sequence Repository: How to Facilitate Pseudomolecule Assembly?" (W424)

2:00pm - 3:00pm Coffee Break - GRAND EXHIBIT HALL

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4:00pm - 6:10pm Plant Science at the JGI and KBase - SAN DIEGO Organizers: Jeremy Schmutz, DOE Joint Genome Institute , Gerald A Tuskan, Oak Ridge National Laboratory , Doreen Ware, Cold Spring Harbor Laboratory/USDA-ARS and Dave Weston, Oak Ridge National Laboratory

4:00pm Jeremy Schmutz, DOE Joint Genome Institute

"Joint Genome Institue Plant Science Program" (W718)

4:20pm Dave Weston, Oak Ridge National Laboratory "Plant Science in KBase" (W719)

4:35pm Thomas Juenger, University of Texas at Austin "Panicum hallii: Genomics Enabled Perennial Grass Model" (W720)

4:55pm Wellington Muchero, Oak Ridge National Laboratory "Highly Efficient Discovery of Novel Genes in the Complex Perennial Populus Using GWAS and Coexpression Analyses in KBase" (W721)

5:15pm Samuel M D Seaver, Argonne National Laboratory "KBase Metabolic Modeling with Sphagnum" (W722)

5:35pm John Vogel, DOE Joint Genome Institute "How to Work with the JGI and KBase" (W723)

4:00pm - 6:10pm Cassava Genomics - SUNRISE Organizer: Steve Rounsley, Dow Agrosciences

4:00pm Jessen V Bredeson, University of California, Berkeley "Genome Sequence and Genetic Diversity of Cassava and Its Wild Relatives" (W102)

4:20pm Wilhelm Gruissem, ETH Zürich "Development of Herbicide-Tolerant Cassava Using Random Mutagenesis" (W103)

4:40pm Ramu Punna, Institute for Genomic Diversity, Cornell University "Identifying Genetic Load By Whole Genome and Transcriptome Sequencing of Cassava Breeding Lines" (W104)

5:00pm Marnin Wolfe, Cornell University "Genome-Wide Association Analyses Reveal Key Aspects of Genetic Architecture Cassava in Africa" (W105)

5:20pm Nigel J Taylor, Donald Danforth Plant Science Center "TBD" (W106)

5:40pm Morag Ferguson, International Institute of Tropical Agriculture (IITA) "TBD" (W107)

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4:00pm - 6:10pm Components of Apomixis - PACIFIC SALON 6-7 (2ND FLOOR) Organizers: Emidio Albertini, University of Perugia and Tim Sharbel, IPK Gatersleben

4:00pm Elvira Hoerandl, Georg-August-University of Goettingen

"Stress Response of Reproductive Pathways in Facultative Apomictic Ranunculus Auricomus Hybrids" (W167)

4:20pm John G Carman, Utah State University "Hot on the Trail of the Sex-Apomixis Switch in Boechera (Brassicaceae)" (W168)

4:40pm Nico De Storme, Ghent University "Male Apomixis: An Alternative Strategy to Synthetically Engineer Clonal Seed Formation in Plants" (W169)

5:00pm Shai J Lawit, DuPont Pioneer "Harnessing Components of Apomixis for Agricultural Productivity" (W170)

5:20pm Gianni Barcaccia, University of Padua "Flower Transcriptomics for Uncovering Genes Related to Plant Reproduction in the Facultative Apomict Hypericum perforatum L" (W171)

5:40pm John T Lovell, University of Texas, Austin "Muller's Ratchet and Adaptation in Sympatric Sexual and Apomictic Boechera Lineages" (W172)

4:00pm - 6:10pm Galaxy for SNP and Variant Data Analysis - CALIFORNIA Organizer: Dave Clements, Johns Hopkins University

Galaxy is a data integration and analysis platform for life sciences research (http://galaxyprojectorg) This hands-on workshop briefly introduces the Galaxy platform and then walks participants through a multi-step, SNP and variant calling analysis exercise, starting with quality control We will take advantage of Galaxy's rich tool set and visualization capabilities to do this

The workshop will also provide a brief overview of the Galaxy Project, and several ways in which the Galaxy platform is available to researchers

Galaxy is an open-source, web-based platform, and there are over 60 publicly accessible servers around the world Galaxy can also be installed locally, or on the cloud

Galaxy enables bench scientists to create and experiment with sophisticated and reproducible data analysis If you are new to next generation sequencing data analysis, or if you are trying to find a better way to manage and perform your analyses, then this workshop will be of interest to you

4:00pm Dave Clements, Johns Hopkins University "Galaxy for SNP and Variant Data Analysis" (W317)

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http://galaxyproject.org/


4:00pm - 6:10pm Gene Expression Analysis - ROYAL PALM SALON 1,2,3 Organizers: David W Galbraith, University of Arizona, BIO5 Institute and Gregory D May, DuPont Pioneer

4:00pm Rodrigo A Gutierrez, Pontificia Universidad Católica de Chile

"TBA" (W318)

4:20pm Sharon B Gray, University of California, Davis "Understanding Gene Expression Responses to the Environment in Tomato Roots at the Cell Type and Tissue-Specific Level" (W319)

4:40pm Niina Haiminen, IBM T J Watson Research - Computational Biology Center "RoDEO: Non-Parametric Robust Differential Expression Operator" (W320)

5:00pm Mathew G Lewsey, Salk Institute for Biological Studies "Networks Regulating Hormone-Mediated Plant Growth" (W321)

5:20pm Jeremy Pillet, University of Florida "Identification of Novel Flavonoid-Pathway Regulatory Genes using Transcriptome Correlation Network Analysis in Ripe Strawberry (Fragaria x ananassa) Fruit" (W322)

5:40pm Tyson A Clark, Pacific Biosciences "Full-length, Single Molecule, Whole Transcriptome cDNA Sequencing of the European Cuttlefish" (W323)

4:00pm - 6:10pm Host-Microbe Interactions - SUNSET Organizers: Reno Pontarollo, Genome Prairie and Brett Tyler, Oregon State Univ.

4:00pm Li-Jun Ma, University of Massachusetts Amherst "Genomic Plasticity and the Adaptation of Pathogenic Fungi" (W395)

4:30pm Lida Derevnina, Genome Center, University of California "The Downy Mildews: So Many Genomes, so Little Time" (W396)

5:00pm Flavio Schwarz, University of California, San Diego "Human-Specific Changes in the Biology of Siglecs and their Relevance for Host–Microbe Interactions" (W397)

5:30pm Laura M Braden, University of Victoria "Salmon Skin – Ground Zero of the Molecular War"

4:00pm - 6:10pm Illimina: Agrigenomic Tools: Powered by Illumina — From Discovery to Decision - GOLDEN WEST Organizer: Lauren Brock, Illumina, Inc The Illumina Workshop will highlight Agrigenomic tools from Illumina that are being used to meet agricultural application needs from discovery to breeding and production decisions The recipient of the 2015 Agricultural Greater Good Initiative will be announced Attendees will learn what’s new from Illumina and have an opportunity to visit with Illumina experts across our portfolio

4:00pm Mike Thompson - Introductions and Announcements 4:20pm Andre Eggen - 1000 Bull Genomes Project 4:40pm Richard Finkers - A de novo assembly for the 16GB Allium cepa genome, tears of joy 5:00pm Tim Close - Development of a 60k iSelect to Facilitate Cowpea Breeding 5:20pm Giovana Prout - Illumina Concierge Service 5:40pm Kirk Malloy - What's new from Illumina

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4:00pm - 6:10pm Perennial Grasses - PACIFIC SALON 2 Organizers: Malay C Saha, The Samuel Roberts Noble Foundation and Shing Kwok, USDA National Institute of Food and Agriculture

4:00pm Hong Luo, Clemson University

"Genetic Engineering of Perennial Grasses: Trait Modification, Transgene Containment and Gene Discovery in Turf Species" (W502)

4:20pm Erik J Sacks, Energy Biosciences Institute, University of Illinois "Genomics and Breeding of Miscanthus" (W503)

4:40pm Hilde Muylle, ILVO-Plant Sciences Unit-Growth and Development "An Association Mapping Approach on Cell Wall Digestibility and Plant Architecture Gives Insight in Yield, Persistency and Forage Quality in Perennial Ryegrasses" (W504)

5:00pm Guillaume P Ramstein, University of Wisconsin-Madison "Genome-Wide Association Study Based on Multiple Imputation with Low-Depth Sequencing Data: Application to Biofuel Traits in Reed Canarygrass" (W505)

5:20pm Roger Thilmony, USDA-ARS "Expanding the Breeder's Toolbox: Use of the Model Perennial Grass Brachypodium sylvaticum to Study Abiotic Stress and to Develop Biotechnological Tools for Switchgrass Improvement" (W506)

5:40pm Paul Grabowski, USDA-ARS "Detecting Genetic Associations with Phenology in Switchgrass Using Exome-Capture" (W507)

4:00pm - 6:10pm Plant Dormancy Workshop - ROYAL PALM SALON 4,5,6 Organizers: Anne Fennell, South Dakota State University and Jason Londo, USDA-ARS Grape Genetics Research Unit

4:00pm Dormancy Workshop Introductory Remarks 4:05pm Michael Wisniewski, USDA-ARS

"Deciphering the Integrated Regulation of Dormancy, Cold Hardiness, and Growth in Apple" (W532)

4:40pm Gregoire Le Provost, INRA, BIOGECO, UMR 1202 "A RNAseq Approach to Decipher the Molecular Mechanisms Involved in Dormancy Regulation in the Fagaceae Family" (W533)

5:00pm Victor Busov, Michigan Tech University "Discovery of Dormancy-Associated Genes in Populus through Activation Tagging" (W534)

5:20pm Xingyou Gu, South Dakota State University "Identities and Regulatory Mechanisms of Seed Dormancy Genes Map-Based Cloned from Rice" (W536)

5:40pm Eiji Nambara, Dept of Cell & Systems Biology, University of Toronto "A Comparative Transcriptome Analysis on Growth Regulation Between Seeds and Buds of Arabidopsis" (W535)

96


4:00pm - 6:10pm Root Genomics - PACIFIC SALON 4-5 (2ND FLOOR) Organizer: Antonio Costa De Oliveira, Federal University of Pelotas

4:00pm Erin Sparks, Duke University

"Transcriptional Networks Reveal Different Mechanisms to Achieve Tissue-Specific Expression Patterns in the Arabidopsis Root" (W647)

4:20pm Riccardo Bovina, DipSA - University of Bologna "Describing and Mapping ROOT Mutants in Barley" (W644)

4:40pm Tri D Vuong, University of Missouri & National Center for Soybean Biotechnology "Genetic Architecture of Cyst Nematode Resistance Revealed By Genome-Wide Association Study in Soybean" (W645)

5:00pm Emanuel Souza, UFPR "Transcriptomic Analyses of Roots of Cereals Associated to the Nitrogen-Fixing Bacteria Azospirillum brasilense and Herbaspirillum seropedicae" (W648)

5:20pm Ji-Young Lee, School of Biological Sciences, Seoul National University "Cytokinin-Dependent Secondary Growth Determines Root Biomass in Radish (Raphanus sativus L)" (W643)

5:40pm Jonathan Atkinson, The University of Nottingham "Phenotyping Wheat Root Architecture in 2D and 3D" (W646)

4:00pm - 6:10pm Bioenergy - Towards Increasing Oil in Nonseed Biomass - TOWNE Organizer: Aruna Kilaru, East Tennessee State University

4:00pm Introductory Remarks 4:04pm Xiaobo Li, Carnegie Institution for Science

"Construction of an Indexed Mutant Library to Enable Reverse Genetics Studies of Biological Processes in Chlamydomonas reinhardtii" (W062)

4:22pm Aruna Kilaru, East Tennessee State University "Comparative Transcriptomics Identifies Key Steps in Storage Oil Biosynthesis in Plant Tissues" (W063)

4:40pm Yang Yang, Michigan State University, GLBRC "Ectopic Expression of WRI1 Affects Fatty Acid Homeostasis in Brachypodium distachyon Vegetative Tissues" (W064)

4:58pm Thomas E Clemente, University of Nebraska "Towards the Development of Sustainable Feedstocks for Renewable Biobased Products: The Case for Sugarcane and Sweet Sorghum" (W065)

5:16pm Jos van Boxtel, Arcadia Biosciences "Vegetative Production of Oil Targeted for High Biomass Crops" (W066)

5:34pm Olga Yurchenko, US Arid-Land Agricultural Research Center "Metabolic Engineering for Increasing Oil in Vegetative Plant Tissues" (W067)

5:52pm Thomas Vanhercke, CSIRO Agriculture Flagship "Maximizing TAG Accumulation in Plant Leaves by Combinatorial Metabolic Engineering" (W068)

97


4:00pm - 6:10pm The Resurgence of Reference Quality Genome Sequence - PACIFIC SALON 1 Organizer: Michael Schatz, Cold Spring Harbor Laboratory Co-chairs: Ian Korf, UC Davis and Daniel S Rokhsar, DOE Joint Genome Institute

4:00pm Michael Schatz, Cold Spring Harbor Laboratory

"The Resurgence of Reference Quality Genome Sequence" (W790)

4:20pm Rod A Wing, Arizona Genomics Institute, University of Arizona "Old School/New School Genome Sequencing: One Step Backward - a Quantum Leap Forward" (W791)

4:40pm Kim C Worley, Baylor College of Medicine "Reference Genome Assembly in 2015 - Methods for the 21st Century" (W792)

5:00pm Timothy PL Smith, USDA-ARS, US Meat Animal Research Center "Current Options for Creating Genome Assemblies, and their Uses" (W793)

5:20pm Richard Green, University of California, Santa Cruz "An in vitro Long-Range Mate-Pair Protocol for Genome Scaffolding" (W794)

5:40pm Daniel S Rokhsar, DOE Joint Genome Institute "Reference Quality Genome Assembly" (W795)

4:00pm - 6:10pm Plant Phenotyping Partners - Together for Better High-Throughput Digital Phenotpying - ESQUIRE Organizer: Bas van Eerdt, WPS Chair: Steve Hunt, Qubit Systems

4:00pm Bas van Eerdt, WPS "Never considered: affordable solutions for ultra-high-throughput phenotyping"

4:20pm Stevens M Brumbley, University of North Texas "Plant Metabolic Engineering: Opportunities for Plant Phenotyping"

4:40pm Klara Panzarova, PSI "New tools for high-throughput plant phenotyping"

5:00pm Lukas Spichal, Palacký University Olomouc "Integrative automated high-throughput phenotyping of plant shoots and its application in development of plant growth regulators and stress-response studies"

5:20pm Gregoire Hummel, Phenospex "What is required to close the gap between greenhouse and field phenotyping?"

5:40pm Xavier Sirault, CSIRO Plant Industry - High Resolution Plant Phenomics Centre "Agriculture in the digital era"

98




8:00am - 9:30am Plenary Talks - TOWN AND COUNTRY Chair: J Perry Gustafson, University of Missouri

8:00am Giles Oldroyd, John Innes Centre "Engineering Nitrogen-Fixing Symbiotic Associations in Cereals”

8:45am Christina Warinner, University of Oklahoma "Reconstructing Our Ancient Microbial Self"


10:30am - 12:40pm What are the bottlenecks in high-throughput phenotype research? - PACIFIC SALON 3

Organizer: Edgar Spalding, University of Wisconsin Madison

10:30am A Mark Settles, University of Florida, Gainesville, FL "Maize Seed Phenotyping By Machine Vision" (W830)

10:50am Patrick S Schnable, Department of Agronomy, Iowa State University "Predictive Phenomics at Iowa State" (W831)

11:10am Matthew Thompson, Blue River Technology "Industrial Technology for Phenotyping Plants in the Field" (W832)

10:30am - 12:40pm Animal Genomics and Adaptation to Climate Change - SUNSET Organizer: Susan J Lamont, Iowa State University

10:30am Welcome Remarks 10:35am Jason W Ross, Iowa State University

"Alterations in Body Composition and Transcriptional Profile as a Result of Prenatal Heat Stress Exposure in Pigs" (W025)

11:05am Max F Rothschild, Iowa State University "Genome-Wide SNP Scans Reveal Multiple Signatures of Selection in Egyptian Barki Sheep and Goats Raised in Hot Arid Environments" (W026)

11:35am Matt L Spangler, University of Nebraska-Lincoln "Sensitivity to Temperature Variation in Beef Cattle: Opportunities and Challenges for Selection" (W027)

12:05pm Susan J Lamont, Iowa State University "Genomics of Heat Stress in Poultry" (W028)


99


10:30am - 12:40pm UCSC Genome Browser - a home for all organisms - ROYAL PALM SALON 1-2 Organizers: Robert Kuhn, Univ. California Santa Cruz and Pauline Fujita, Univ. of California Santa Cruz

10:30am Robert Kuhn, UCalifornia Santa Cruz

"UCSC Genome Browser - a Home for All Organisms" (W822)

11:30am Pauline Fujita, University of California Santa Cruz "UCSC Genome Browser - a Home for All Organisms" (W823)

10:30am - 12:40pm International Rice Informatics Consortium - PACIFIC SALON 2 Organizer: Kenneth L McNally, International Rice Research Institute

10:30am Nickolai Alexandrov, International Rice Research Institute "Update on IRIC Portal and Consortium"

10:50am Pierre Larmande, IRD, UMR DIADE, Institut de Biologie Computationnelle "Enabling Knowledge Management in the Agronomic Domain"

11:10am Rod A Wing, University of Arizona, Arizona Genomics Institute "TBA"

11:30am Ruaraidh Hamilton, International Rice Research Institute "TBA"

10:30am - 12:40pm Flax Genomics - TOWNE Organizers: Sylvie Cloutier, Agriculture and Agri-Food Canada and Christopher Cullis, Case Western Reserve University

10:30am Michael Deyholos, University of British Columbia "Variation in the Flax Genome and Its Application to Bioproducts" (W254)

10:50am Frank M You, Agriculture and Agri-Food Canada "The Refined Flax Genome, Its Evolution and Applications" (W255)

11:10am Christopher Cullis, Case Western Reserve University "The Flax Genome, a Revolution in Evolution" (W253)

11:30am Simon W Hawkins, University of Lille 1 "EMS Mutants and Functional Genomics to Dissect Cell Wall Biology in Flax" (W257)

11:50am Braulio Soto-Cerda, Agriaquaculture Nutritional Genomic Center (CGNA) "Genome Wide Association Study (GWAS) of Yield-Related Traits in Flax" (W258)

12:10pm Pat Heslop-Harrison, University of Leicester "Diversity and Characters in Ethiopian Linseed Accessions" (W259)

100


10:30am - 12:40pm Exploring Phytobiomes - ROYAL PALM SALON 3-4 Organizers: Kellye Eversole, IWGSC , Angela Records, USAID and Jan E Leach, Colorado State University

10:30am Jan E Leach, Colorado State University

"Phytobiomes and Plant Health: Science and Policy" (W248)

10:50am Varghese Thomas, Bayer CropScience, Biologics "Phytobiome, a New View of Crop Production - an Industry Perspective" (W249)

11:10am J Alejandro Rojas, Michigan State University "Exploring the Oomycete Microbiome Associated with Soybean Seedling Diseases in the US" (W247)

11:30am Gary Felton, Pennsylvania State University "Mediation of Induced Plant Defenses by the Symbionts of Insect Herbivores" (W251)

11:50am Phillip Myer, USDA-ARS, US Meat Animal Research Center "Characterizing the Microbiome Across the Gastrointestinal Tract from Steers Differing in Feed Efficiency"

12:10pm Carolyn Young, The Samuel Roberts Noble Foundation "Understanding Beneficial and Pathogenic Microorganisms Impacting Production of Forage Crops" (W252)

10:30am - 12:40pm Computer Demo 4 - CALIFORNIA Organizers: Dave Clements, Johns Hopkins University and Brian Smith-White, National Center for Biotechnology Information (NCBI/NLM/NIH)

10:30am Jorge A Duitama Castellanos, International Center for Tropical Agriculture (CIAT)

"Bioinformatic Analysis of Genotype By Sequencing (GBS) Data with NGSEP" (C24)

10:45am Michael T Lovci, University of California, San Diego "Flotilla: An Open-Source Toolkit for Single-Cell RNA-Seq Data Analysis" (C25)

11:00am Ana Conesa, Centro Investigacion Principe Felipe "The STATegra NGS Experiment Management System" (C26)

11:15am Carrie L Ganote, Indiana University ""Roll" Your Own Genomics Cluster with Rocks and the XSEDE-Compatible Basic Cluster" (C27)

11:30am Meng Huang, Washington State University "BioGPU: A High Performance Computing Tool for Genome-Wide Association Studies" (C28)

11:45am Priya Ranjan, University of Tennessee, Knoxville "The DOE Systems Biology Knowledgebase (KBase): Progress Toward a System for Inference and Modeling of Biological Function in Plants" (C29)

12:00pm Takako Mochizuki, Genome Informatics Laboratory, NIG, ROIS "DNA Polymorphism Database from New-Generation Sequence Read Archive and Analytical Workflow" (C30)

101


10:30am - 5:00pm GMOD - GOLDEN WEST Organizer: Scott Cain, Ontario Institute for Cancer Research

10:30am Scott Cain, Ontario Institute for Cancer Research

"The Future of GMOD and Chado" (W367)

10:50am Lacey-Anne Sanderson, University of Saskatchewan "KnowPulse: A Breeder-Focused Web Portal That Integrates Genetics and Genomics of Pulse Crops with Model Genomes" (W368)

11:10am Richard D Hayes, DOE Joint Genome Institute "Phytozome Population Diversity Visualization in JBrowse: A very large Dataset Case Study" (W369)

11:30am Vivek Krishnakumar, J Craig Venter Institute "JBrowse within the Arabidopsis Information Portal (AIP) Project" (W370)

11:50am Monica C Munoz-Torres, Lawrence Berkeley National Laboratory "Apollo + i5K: Collaborative Curation and Interactive Analysis of Genomes" (W371)

12:10pm Arun S Seetharam, Iowa State University "The Teosinte (Zea mays ssp parviglumis) de novo Genome Assembly" (W372)

12:30pm Break 1:30pm Panel Discussion


7:30pm - 11:55pm Closing Banquet Dinner - GRAND EXHIBIT HALL

102

Future Meetings

See You Next Year:

PAG XXIV January 9-13, 2016

Town & Country Hotel San Diego, CA

And the Year After:

PAG XXV January 14-18, 2017


And the Year After:

PAG XXVI January 13-17, 2018


103

Corporate Sponsors

Thanks to our Major Corporate Sponsors for their support of the PAG XXIII Conference:

Affymetrix Final Program Advertiser

Bayer CropScience Note Pads Fluidigm Hospitality Event IBM Exhibit Hall Aisle Signs LemnaTec Portfolio Bags Pioneer DuPont Plenary Sessions Quartzy Poster Networking Cards Roche Diagnostic Corp. Mobile App

Exhibit Hall Aisle Signs

Syngenta Computer Room Wireless Internet

Thermo Fisher Scientific Attendee Lanyards (Formerly Life Technologies™) Final program Advertiser

104

Acknowledgements

The Plant & Animal Genome Organizing Committee and Sponsors would like to thank the following people for their

time and commitment to the Plant & Animal Genome XXIII Conference.

Abstracts Coordinators

Gerry Lazo David Grant

Victoria Carollo Blake

Travel Grants Coordinator Douglas Bigwood

Tom Blake

Special Duty Coordinators Hans Cheng

Max Rothschild 105

Travel Grant Awards

Jerome P. Miksche Travel Grant

Carlos Marcelino Rodriguez Lopez The University of Adelaide, Australia

“We prefer them old: Epigenetic control of wine quality in response to grapevine age”

Earl J. Scherago Travel Grant

Susana M. Coelho French National Center for Scientific Research (CNRS), France

“Genomic and evolutionary features of the brown alga Ectocarpus UV sex chromosomes”

Mike D. Gale Travel Grant

Yiliang Ding John Innes Centre, UK

“A transformative platform deciphers the RNA structural code in living cells”

Scherago International Student Travel Grant(s): Plant

Udaykumar Kage

McGill University, Canada “Identification of candidate genes in QTL 2DL and deciphering mechanisms of resistance against fusarium

head blight in wheat based on metabolo-genomics”

Kelsey Wood University of California, Davis, USA

“Genome Mining to Discover Pathogen Suppressors of Plant Programmed Cell Death”

K.N.S. Usha Kiranmayee Osmania University (ICRISAT), India

“Fine genetic mapping of combined shoot fly resistance (SFR) and stay green (STG) traits on sorghum chromosome SBI-10”

106

Travel Grant Awards Scherago International Student Travel Grant

Animal: Andrew S. Mason

Roslin Institute, Edinburgh University, Scotland “A new look at the LTR retrotransposon content of the chicken genome”

Neal A. Jorgensen Genome Travel Grants

Cattle:

Ahmed Sallam

University of Wisconsin, Madison, USA “An Across-Breed Genome Wide Association Analysis of Susceptibility to Paratuberculosis in Dairy Cattle”

Lydia J. Siebert University of Tennessee, Knoxville

“Genome wide association study identifies loci associated with mastitis antibiotic therapy phenotypes following experimental challenge with Streptococcus uberis.”

Equine:

Robert Schaefer University of Minnesota, USA

“Selection of tagging SNPs and imputation efficiency of 670K commercial SNP chip”

Swine:

Melanie Trenhaile University of Nebraska, Lincoln, USA

“Genomic analysis of the interaction between energy intake and SNP genotypes on age at puberty”

Poultry:

Tae Hyun Kim University of California, Davis, USA

“RNA-seq based genome-wide analysis of genomic imprinting in chicken lungs”

107

Travel Grant Awards

Sheep/Goat:

Michael Gonzalez Washington State University, USA

“Artiodactyl MYADM-like Repeat Region: BAC Sequence Identifies 7 Open Reading Frames with Differing Lengths Between Reference Genome and Alternate Allele”

Bioinformatics:

Maria Haag University of Missouri, USA

“Genome Wide Copy Number Variation in the Canine Genome”

Aquaculture Species Group Student and

Postdoctoral Fellowship Bursaries

Orly Eshel The Hebrew University of Jerusalem, Israel

“Detection of genes and microRNA involved in sex determination in Nile tilapia (Oreochromis niloticus)”

Ailu Chen Auburn University, USA

“Allele-Specific Expression in Interspecific Catfish Hybrids”

Xin Geng Auburn University, USA

“GWAS Analyses in Catfish Reveal the Presence of Functional Hubs of Related Genes within Major QTLs for Columnaris Disease Resistance”

Carlos Rodriguez

The University of Adelaide, Australia “Can epigenetic regulation of sex-ratios explain natural variation in self-fertilization rates?”

Agnieszka Stadnik

Simon Fraser University, Canada “Yeast two-hybridization analysis of Atlantic Salmon sdY interactions”

108

Exhibitor Descriptions

Company Booth#

Advanced Analytical Technologies, Inc. Ames, IA, USA www.aati-us.com

519

Want faster results? The Fragment Analyzer™, uses capillary electrophoresis to quantify and qualify Next Gen Sequencing (NGS) fragment libraries by automating the separation of fragments. Additionally, the instrument analyzes total RNA, and genomic DNA up to 40,000 bp. Other applications include SSR/Microsatellites, and mutation detection (TILLiNG).

Affymetrix Santa Clara, CA www.affymetrix.com

319

Affymetrix is transforming genomics in agriculture and offers a powerful range of genotyping and gene expression profiling solutions. Researchers and breeders can cost-effectively identify, validate, and screen complex genetic traits in animals and plants – diploids or polyploids. Visit our booth to learn about our new genotyping solutions for complex genomes, an expanded selection of transcriptome expression profiling solutions, and molecular biology reagents.

Agilent Technologies Santa Clara, CA www.agilent.com/genomics

218

Agilent is a global leader in target enrichment for next-generation sequencing and genomic microarrays. The Agilent SureSelect and HaloPlex target enrichment systems enable researchers to easily choose which segments of a genome to sequence. Additional product lines include microarrays for genome-wide measurement of gene expression and for comparative genomics hybridization, as well as SureFISH, a highly specific and sensitive product for oligonucleotide fluorescent in situ hybridization. In addition, Agilent offers a microfluidic Bioanalyzer to measure sample quality, and a full set of reagents, hardware, methods and bioinformatics software for genomic experiments.

ALCI SAS Mauguio, France www.alci.fr

422

ALCI is providing Vision Analysis turnkey solutions as Automatic Sampling tools for DNA Analysis, Seed Growth analysis system and Pathology Analysis tools. All Solutions are customized with the customer specifications.

109

Amphasys AG Root D4, LU, Switzerland www.amphasys.com

503

Amphasys provides a label-free solution for the analysis of single cell characteristics like cell size and morphology, viability, cell differentiation and ploidy. The Ampha Z30 impedance flow cytometers are used for the determination of pollen viability, maturation grade and ploidy levels. They result in significant improvements of the efficiency of breeding and production processes in the seed industry. Other applications are milk analysis and quality monitoring in biotechnological processes (inline analyses). The patented, chip-based technology eliminates time-consuming sample preparation steps like labeling and the need of expensive laboratory infrastructure. The compact instrument is equally suited for laboratory and production environment.

Amplicon Express, Inc. Pullman, WA www.ampliconexpress.com

307

Amplicon Express are experts on BAC technologies, Pooling systems (Pools & Superpools) and using Next Gen Sequencing to make maximum quality genome assemblies. We construct, screen, re-array, pool and NGS genomic DNA libraries. Please see us if your genome assembly combines all chromosomes into a haploid mosaic. We make the tools you need for an allele specific chromosome assembly. Remember: there are NO SNP's on a BAC clone!

Art Robbins Instruments Sunnyvale, CA www.artrobbins.com

433

View the COBRA SINGLE and 4-CHANNEL non-contact dispensing instruments for 96, 384 and 1536 well plates. Achieve fast on the fly dispensing of expensive Real-Time PCR reagents with low reagent dead volume. Also view the SCORPION high speed dispenser with flexible assay design software.

Artel Westbrook, ME www.artel-usa.com

524

Artel is the world-leading liquid handling quality assurance expert, specializing in solving liquid handling quality challenges for laboratories. Artel products and services enable quick, easy optimization of liquid handling processes for handheld pipettes and automated liquid handlers. Our customers include laboratories in the pharmaceutical, university, public health and environmental sectors.

110

aura optik gmbh Jena, Germany www.aura-optik.com

429

Our platform aureka® serves for microsampling on the whole and living organism, for accessing very small structures, even single cells, with different tools. Researchers can use it to stimulate, isolate or otherwise manipulate cells, e.g. microinject them. The key feature of aureka® is the true-sided observation and manipulation. The easy-to-use instrument consists of two dedicated 3D micromanipulators integrated into a ZoomMicroscope which is able to visualize objects in a large field of view with high resolution.

Aurora Biomed Inc. Vancouver, BC, Canada www.aurorabiomed.com

127

Aurora Biomed is a worldwide leader in the design and development of lab automation solutions for life science, environmental science, drug discovery/safety and chemical analysis research. We are committed to improving the quality of human and environmental health by providing products and services which facilitate a higher sample throughput while improving quality, accuracy and precision.

Azco Biotech Oceanside, CA www.azcobiotech.com

118

Azco specializes in solutions for DNA synthesis and detection. Visit our booth to learn more about recent developments in oligonucleotide synthesis for the development of sequence capture probes as well as gene synthesis. We provide a full line of reagents for DNA/RNA synthesis as well as Sanger and next-gen sequencing. Ask us about whats new! And, remember Azco offers a full like of service products for all of you Sequencers, Real-Time PCR instruments and synthesizers. Please let us help service your instruments.

BGI Tech Cambridge, MA www.bgitechsolutions.com

518

BGI Tech, a subsidiary of BGI - the world’s largest genomics organization, provides sequencing and bioinformatics service solutions for global customers in biomedical, agricultural, and environmental areas. Equipped with the industry’s broadest array of cutting-edge technologies, BGI Tech delivers rapid, cost-effective, and high-quality results that enable researchers to achieve scientific breakthroughs.

111

BioBam Bioinformatics S.L. Valencia, Valencia, Spain www.biobam.com

405

BioBam Bioinformatics is internationally recognised for its expertise in functional annotation and genome analysis and offers with Blast2GO a user-friendly solution specially for plant and animal research. Blast2GO is THE tool-box for functional annotation of novel sequences and the genome-wide analysis of annotation data. Our solutions transform the process of complex data analysis into an attractive and interactive task and reduces the gap between experimental work, bioinformatics analysis, and applied research. Something demonstrated by over 1000 citations. For a free trial or more details please visit: http://www.blast2go.com

BioChambers Incorporated Winnipeg, MB, Canada www.biochambers.com

419

Plant growth chambers, tissue culture chambers, low temperature chambers, and many more life sciences chambers manufactured to meet your needs. Looking for more growth area? BioChambers also manufactures rooms of various sizes to accommodate your laboratory space. If you’re looking for flexibility we have a series of chambers and rooms convertible between configurations optimal for tall plant research (high light levels with single tier shelving maximizing growth height) to short plant research (multiple tiers maximizing growth area). We are focused on delivering a quality product, excellent service, and innovative designs. Visit us to discuss your research requirements.

BioDiagnostics Inc. River Falls, WI www.biodiagnostics.net

527

BioDiagnostics, Inc. is an independent testing company focusing on the seed industry. BDI is a recognized leader in the areas of seedling germination, vigor, and physical purity; trait purity testing; genetic purity; event identity, zygosity, adventitious presence, molecular breeding & genomic testing services, and chemical analysis of seeds and treatments. BioDiagnostics is accredited by ISO/IEC 17025:2005 in all areas of seed testing. BDI is also accredited by the USDA Accredited Seed Laboratory program for standard seed testing services, including germination and physical purity.

112

BioFire Defense Salt Lake City, UT www.BioFireDefense.com

507

BioFire Defense designed the LightScanner, the first system to use Hi-Res Melting (HRM) analysis for mutation scanning and genotyping in a plate system. Standardization is important for research, making the plate format preferable in many settings. Mutations in PCR products are detected by the presence of heteroduplexes using our LCGreen Plus dye. Variations are identified by changes in the shape of the melting profile. HRM on the LightScanner is also being used for mutation discovery in tumor samples, yielding information on mutations present in low allele fractions and allelic imbalances between tumor and matched normal samples.

Bioline USA Taunton, MA www.bioline.com

224

Bioline develops and manufactures a wide range of molecular biology products. For 22 years Bioline has been crafting and perfecting novel manufacturing methods for PCR reagents that results in superior products with superior results for our customers. Consistent with the Bioline commitment to continuous improvement, we are pleased to announce we are now operating to the standards required to meet your ISO 13485 requirements. If amplifying DNA or RNA is part of your work flow, visit us at booth 224 to learn how ultra-high quality reagents can lead to better diagnosis.

Biomatters, Inc. Newark, NJ www.geneious.com

103

Biomatters develop software that accelerates the creation, publication and application of knowledge from ‘omic research, with a mission to translate genomic data into biological and clinical insights.Their flagship product Geneious is a DNA, RNA and protein sequence alignment, assembly and analysis software platform, integrating bioinformatic and molecular biology tools into a simple interface.

BioNano Genomics San Diego, CA www.bionanogenomics.com

330

The Irys platform from BioNano Genomics provides unprecedented insights into whole-genome biology. Genome maps are generated from massively parallel single-molecule visualization of extremely long DNA, providing long-range contiguity critical for de novo sequence scaffolding and analysis of structural variation in complex genomes. These maps provide dense genome-wide anchor points for ordering and orienting sequencing contigs or scaffolds to greatly increase completion and accuracy of de novo assemblies. Structural variants and repeats are measured directly within long “reads” for comprehensive analysis of the inaccessible genome.

113

Bioo Scientific Austin, TX www.biooscientific.com

432

Bioo Scientific provides innovative NEXTflex™ library prep kits offering reduced bias and increased accuracy, sensitivity, flexibility and speed for Illumina and Ion Torrent sequencing. The NEXTflex™ line includes library prep kits and barcoded adapters for rapid DNA-Seq, ChIP-Seq, MeDip/MeCAP, Bisulfite-Seq, and PCR-Free DNA-Seq. Amplicon-Seq cancer panels offer complete solutions for targeted sequencing, and 16S and 18S amplicon-seq kits are available for improved metagenomic analysis. For library prep of RNA samples we offer RNA-Seq and directional RNA-Seq solutions which incorporate molecular indexes for improved quantitation, and small RNA-Seq kits which incorporate randomized adapters to reduce ligation associated biases.

Bio-Rad Laboratories Hercules, CA www.bio-rad.com

408

Bio-Rad's life science technologies include products used for conventional PCR, real-time PCR, transfection, cell imaging, real-time PCR Kits and Reagents. Bio-Rad’s Digital Biology Center specializes in the development of advanced technologies for the rapidly growing field of digital biology – including complete solutions for droplet digital PCR and digital sequencing.

Biosearch Technologies Petaluma, CA www.biosearchtech.com

222

Biosearch Technologies, Inc., located in northern California, is an ISO 9001:2008 certified manufacturer of sophisticated probes and primers for real-time qPCR. Biosearch is the original source of BHQ® Probes and offers RealTimeDesign software, a free, web-based, qPCR assay design program for gene expression analysis, SNP genotyping, and multiplexed qPCR.

Boreal Genomics Inc. Vancouver, BC, Canada www.borealgenomics.com

631

Boreal Genomics provides sample preparation tools to enable genetic analysis of the most challenging samples in life science, environmental and clinical research. The Aurora nucleic acid purification system utilizes a novel electrophoretic approach to enable exceptional removal of PCR inhibitors, concentration of high molecular weight DNA 50kb–1Mb and recovery of trace DNA from low biomass or dilute samples.

114

Brooks Lifescience Systems Spokane, WA www.brooks.com

426

Brooks Life Science Systems is the leader in sample management solutions. In addition to automated stores and consumables, we offer a range of handheld plant sampling ‘PlantTrak Hx’, and benchtop leaf sampling ‘PlantTrak Lx’ systems to sample and track genetic material from plants, decreasing human error and avoiding cross contamination.

Canadian Science Publishing Ottawa, Ontario, Canada www.nrcresearchpress.com

129

Canadian Science Publishing is the not-for-profit publisher of the NRC Research Press journals. Our scientific and technical journals, published since 1929, attract authors and readers from more than 175 countries and are available in print, online, and via mobile devices. Submit your next paper to Genome! This monthly journal was established in 1959, and publishes original research articles, reviews, mini-reviews, and commentaries. The areas of interest include general genetics, cytogenetics, molecular genetics, evolutionary genetics, population genetics, developmental genetics, plant genetics, microbial genetics, mammalian genetics, genomics, and other related areas.

Center for Aquaculture Technologies San Diego, CA www.aquatechcenter.com

622

The Center for Aquaculture Technologies takes on custom contract research projects. The company focuses include genotyping in support of breeding programs, managing breeding programs, genomics projects, fish health and nutrition trials, and genetic engineering.

CLC bio - a QIAGEN Company Aarhus, DK, Denmark www.clcagro.com

423

CLC bio, a QIAGEN Company, is the world’s leading bioinformatics software developer and the only one that provides an analysis platform where both desktop and server software are seamlessly integrated and optimized for best performance. Our software enables you to run advanced workflows and analyze big intricate datasets, which is why the world’s leading agricultural companies and institutions are using our platform for plant and animal research.

115

Computomics Tuebingen, Baden-Wuerttemberg, Germany www.computomics.com

613

Advanced NGS Analysis for Crops. Computomics is a team of world-leading experts in plant research and bioinformatics, offering cutting-edge next-generation sequencing (NGS) analyses for agriculture biotech companies and crop scientists. Whether you are concerned with crop improvement, seed production or plant protection, Computomics helps navigate the complexities of grain, vegetable, fruit and other genomes. Our advanced bioinformatics services provide our customers with quality NGS data interpretation from state-of-the-art genomics tools and technologies. Let us help you achieve your research goals.

Conviron Winnipeg, MB, Canada www.conviron.com

617

Established in 1964 and with a global sales, distribution, and service network – Conviron is the world leader in the design, manufacture and installation of controlled environment systems for plant science and agricultural biotechnology research. Conviron’s reach-in plant growth chambers, walk-in rooms and Argus Control Systems (a Conviron company) provide precise, uniform, and repeatable control of temperature, light, humidity, dehumidification, CO2, and other environmental conditions. All environmental parameters can be remotely programmed, monitored and analyzed with unparalleled accuracy and convenience. Learn more at www.conviron.com or contact us for more information at [email protected]

Crop Science Society of America Madison, WI www.crops.org

531

The Crop Science Society of America (CSSA) is a prominent international scientific society headquartered in Madison, WI. Society members are dedicated to the conservation and wise use of natural resources to produce food, feed, and fiber crops while maintaining and improving the environment. Since its inception, CSSA has continued to evolve, modifying its educational offerings to support the changing needs of its members. Today, CSSA is seen as a progressive scientific society meeting the needs of its members through publications, recognition and awards, placement service, certification programs, meetings, and student activities

116

Data2Bio, LLC Ames, IA www.data2bio.com

133

Data2Bio™ helps you overcome the challenges of working with increasing large and complex genomes. Our proprietary BSR-seq and BSD-seq approaches enable quick and low-cost mutant mapping, while tGBS™ provides accurate genotyping of individuals without imputation and is effective in heterozygotes, polyploids, and species without sequenced reference genomes.

Diagenode Denville, NJ www.diagenode.com

226

Diagenode is a leading global provider of complete solutions for epigenetics research and biological sample preparation. We offer innovative shearing and automation/semi-automation instruments, epigenetics reagent kits, NGS library preparation kits, and high-quality antibodies to streamline DNA methylation, ChIP, and ChIP-seq workflows. The company’s latest innovations include a full ChIP and library preparation automation system, the industry’s most validated ChIP /ChIP-seq antibodies and the Megaruptor shearing system for long fragment generation of up to 75kb for NGS.

DNA Genotek Ottawa, Ontario, Canada www.dnagenotek.com

120

DNA Genotek is focused on improving DNA collection with an all-in-one system for the collection, stabilization, transportation and purification of samples. The company’s Performagene™ product offers producers, breed societies, laboratories, researchers and veterinarians an easy-to-use, reliable and non-invasive method to collect high quality and high quantity DNA from animals.

DNA LandMarks Inc. St-Jean-sur-Richelieu, Quebec, Canada www.dnalandmarks.com

508

DNA LandMarks is an agricultural genomics service lab that provides DNA marker services to plant and animal breeders and researchers all over the world. These services include Next Generation Sequencing, SNP marker development, mapping, marker-assisted selection, marker-assisted backcrossing, fingerprinting and more.

117

DNA Link, Inc. San Diego, CA www.dnalink.com/english

204

A full service sequencing and bioinformatic service provider supporting research, medical, agricultural, and environmental clients across the world. By providing the right amount of experimental design with optimal next generation sequencing technologies, we achieve the highest level of expertise that is demanded by our customers. DNA LINK, Your Link to Precision Genomics. Please stop by booth #204 at PAG to talk with our scientists about your needs and received a free gift. Ask about our service promotions being offered during PAG to receive discount pricing on your sequencing projects.

DNA Solutions, Inc. Oklahoma City, OK www.dnasolutionsusa.com

206

DNA Solutions, Inc. is a genetic testing laboratory. Services include animal genotyping/biomarker development, parentage confirmation, registry management, bacterial/fungal identification, and forensic investigation support. DNA Solutions is accredited to ISO 17025, accredited through the American Association of Blood Banks (AABB) for relationship testing, and has its New York State Department of Health Laboratory Permit. The laboratory provides R&D expertise in DNA sequencing for forensics, animal, and human genotyping. DNA Solutions provides genotyping and parentage confirmation to the North American Deer Registry and provides genotyping services to wildlife enforcement agencies nationwide.

DNASTAR, Inc. Madison, WI www.dnastar.com

223

DNASTAR has pioneered development of desktop computer and cloud sequence assembly and analysis software to increase life scientists’ productivity for over 25 years. DNASTAR’s products include Lasergene software for traditional sequence analysis, next-generation DNA and RNA sequence assembly and analysis, and protein sequence and structure visualization.

DOE Systems Biology Knowledgebase (KBase) Oak Ridge, TN www.kbase.us

203

The Department of Energy Systems Biology Knowledgebase (KBase) is an open software and data platform designed to enable researchers to predict and ultimately design biological function. KBase’s unified data model allows users to perform integrated analyses across plants, microbes, and their communities with a wide range of tools, and to publish their data, methods, results and thoughts in persistent, citable, executable, and reusable electronic narratives allowing scientists to build on the work of others. KBase's open platform will enable external developers to integrate their analysis tools, facilitating distribution, comparative tool analysis, and access to enterprise-class computing.

118

Doriane Nice, France www.doriane.com

522

Doriane™ provides turnkey IT solutions for management of research processes and data. Our 25-year-expertise consists in organizing and securing research departments’ collaborative information, in particular with our standard software. Highly configurable, LABKEY™ handles processes and data of every activity in seed research departments. Meet us on booth 522 !

Douglas Scientific Alexandria, MN www.douglasscientific.com

303

Douglas Scientific provides revolutionary solutions for low to ultra-high throughput nucleic acid analysis. Our point of need portable instrument uses DNAble isothermal DNA amplification chemistry to generate results in under 15 minutes. The Array Tape® Platform provides HTP results in a fully integrated, automated, and inline instrumentation that leverages the cost saving benefits of Array Tape®, a flexible microplate replacement.

Dow AgroSciences Indianapolis, IN www.dowagro.com

329

Dow AgroSciences, based in Indianapolis, Indiana, USA, is committed to discovering, developing, and bringing to market crop protection and plant biotechnology solutions for the growing world. In 1989, The Dow Chemical Company entered a joint venture with the Elanco Plant Sciences business of Eli Lilly and Company to form DowElanco. In 1997, The Dow Chemical Company acquired 100 percent ownership of the business and renamed it Dow AgroSciences. Today, we employ more than 8,000 people worldwide, and our 2013 global sales were $7.1 billion. Follow Dow AgroSciences on Facebook, Twitter, and YouTube.

EMBL-EBI Hinxton, Cambridge, United Kingdom www.ebi.ac.uk

406

The European Bioinformatics Institute is a non-profit research institute which is part of EMBL, Europe’s flagship laboratory for the life sciences. EMBL-EBI provides freely available data covering the spectrum of molecular biology. While we are best known for our bioinformatics services that help you to make sense of your biological data, EMBL-EBI also has a diverse bioinformatics research programme. EMBL-EBI's extensive hands-on training and online learning portal help researchers to make the most of the incredible amount of data being produced every day in life science experiments. We are located on the Wellcome Trust Genome Campus near Cambridge, UK.

119

EMD Millipore Billerica, MA www.emdmillipore.com

331

EMD Millipore is the Life Science division of Merck KGaA of Germany, supporting research, development and production of biotech and pharmaceutical drug therapies with solutions for cellular analysis, multianalyte network elucidation and functional genomics. Our validated antibodies, inhibitors, assays and molecular biology tools advance chromatin, DNA methylation and RNA analysis.

EnviroLogix Inc Portland, Maine envirologix.com

630

EnviroLogix Inc. develops immunoassay (ELISA) and DNA-based (DNAble) test kits for agricultural as well as food and feed safety markets. Our innovative DNAble chemistry promises to change the economics of testing in plant and animal genomics, with the sensitivity and specificity of PCR. EnviroLogix specializes in custom assay development.

Eurofins Genomics Ebersberg, Germany eurofinsgenomics.com

523

Eurofins Genomics provides high-quality next generation sequencing, genotyping, gene expression, gene synthesis, DNA/RNA oligonucleotides and premium-free overnight DNA sequencing. Eurofins Genomics is part of the Eurofins Scientific group which provides bioanalytical testing and consulting services. With 16,000 staff in more than 190 laboratories across 36 countries, Eurofins Scientific excels as a world leader in laboratory services in the fields of R&D, Agriculture, Animal & Plant breeding, Food & Feed production, Pharma & Diagnostics, as well as Environmental and Consumer Products Testing. Find us at eurofinsgenomics.com

Evergreen Roswell, GA www.meetevergreen.com

505

Next Generation Sample Preparation. Automation, Chemistry and Consumables to Extract, Purify, and Process Samples for Agricultural biotechnology. Increasing yield, throughput and sample integrity through innovative science and automation. Supporting scientist from extraction to downstream application.

Fast ID (by Genetic ID) Fairfield, IA www.fastidkit.com

633

Fast ID, developed by Genetic ID, is a silica based purification kit that doesn't require organic extraction or ethanol precipitation. A streamlined and cost effective process that yields exceptionally pure DNA from a wide range of sample types. Multiple downstream applications. Suitable for animal, plant, bacterial materials. Higher PCR efficiency. Column, 96-well high throughput and FastMag formats are available.

120

Floragenex Eugene, OR www.floragenex.com

506

Floragenex is a biotechnology company that provides innovative solutions for genomic analysis in human, plant and animal systems. With multiple offices located on the US Pacific coast, our technologies allow investigation of genomes at unprecedented levels for academic, governmental and commercial researchers.

Fluidigm Corporation South San Francisco, CA www.fluidigm.com

511

We strive to partner with customers to pursue truth in the complex biological world. Our core microfluidic technology provides rapid, simplified and elegant workflows for high-throughput qPCR or next-generation sequencing library preparation. Whatever the application, we never compromise; rather, we deliver cost-effective, easy-to-deploy, easy-to-scale and easy-to-use workflows that produce the high-quality data your lab demands. Let’s partner. Engage with us at fluidigm.com

FLUIDX Charlestown, MA www.fluidx.eu

428

We have great products; consumables, instrumentation and 2D bar-code reading solutions that help our customers successfully store and track their valuable samples for future research. At PAG, we will be showing our newly released Aperio semi automated screwcap capper/decapper and our new Perception high speed 2D reader as well as our full line of 2D barcoded micro tubes and cryo tubes.

Formulatrix, Inc Bedford, MA www.formulatrix.com

202

Formulatrix was established in 2002 to provide protein crystallization automation solutions. Since then, we've started developing the next generation of liquid handlers using microfluidic technology and have most recently began working on a digital PCR solution called the Constellation. Headquartered in Waltham, Massachusetts, we supply software and robotic automation solutions to leading pharmaceutical companies and academic research institutions around the world. Our team works tirelessly to provide the best products in the industry with support that is second to none.

121

Genalice Harderwijk, Netherlands www.genalice.com

403

GENALICE is a young and dynamic company developing groundbreaking software solutions to accelerate and improve next-generation sequencing analysis. Its first product, GENALICE MAP, improves the data influx for analysis. MAP is data pre-processing software. It maps the short reads generated by sequencers up to 200x faster and more accurate than conventional tools. Besides it is capable to reduce the storage footprint significantly. This makes storage of DNA data affordable and sharing much easier.

Gene Codes Corporation Ann Arbor, MI www.genecodes.com

323

Gene Codes Corporation develops Sequencher®, DNA sequence analysis software for Sanger and NGS data sets. Scientists around the world rely on Sequencher’s intuitive user interface, speedy alignment algorithms, and powerful SNP discovery tools to deliver results. Stop by our booth to see what’s new in Sequencher 5.3.

GeneSeek Lincoln, NE www.geneseek.com

320

GeneSeek provides comprehensive research, product development and delivery solutions for the Life Science, Agribusiness, Pharmaceutical and Biotechnology industries. GeneSeek is the largest global provider of DNA testing for animal agribusiness and veterinary medicine with capabilities in place to provide ultra high throughput solutions at low cost.

Genetwister Technologies B.V. Wageningen www.genetwister.nl

128

Genetwister is an innovative biotechnology company specialized in genomic breeding, green biotechnology and bioinformatics of agri- and horticultural crops. We are an expert in marker discovery using NGS technologies, genetic modification and diagnostics using expression profiling and functional genomics. We develop proprietary software for database management, data-analysis, data-visualization and data-mining.

GenoLogics Life Sciences Victoria, British Columbia, Canada www.genologics.com

126

GenoLogics is a leading provider of laboratory information management system (LIMS) software designed for use with genomics and mass spec technologies in regulated and research labs. Clarity LIMS offers quick implementation, an intuitive interface and features that makes it a valuable investment for labs utilizing NGS and other -omics technologies.

122

GenomeWeb New York, New York www.genomeweb.com

420

GenomeWeb is an independent online news organization based in New York. Our editorial mission is to cover the scientific and economic ecosystem spurred by the advent of high-throughput genome sequencing. We operate the largest online newsroom focused on advanced molecular research tools in order to provide our readers with exclusive news and in-depth analysis of this rapidly evolving market. Our readers include scientists, technology professionals, and executives who use and develop the latest advanced tools in molecular biology research and molecular diagnostics.

GenScript USA Inc. Piscataway, NJ, USA www.GenScript.com

131

GenScript is the leading gene, peptide, protein and antibody research partner for basic biological sciences, translational research, and early stage drug discovery. Since the establishment in 2002, GenScript has grown to be a global Contract Research Organization that provides services and products to over 86 countries. The company currently offers biological research services encompassing gene and peptide synthesis, custom antibodies, protein expression, antibody and protein engineering, and in vitro and in vivo pharmacology – all with the goal to Make Research Easy. With headquarters in New Jersey, USA, GenScript has subsidiary companies in Europe, Japan and China.

Golden Helix Bozeman, MT www.goldenhelix.com

124

Golden Helix is a leading bioinformatics organization specializing in genetic association software and services. Its flagship product, SNP & Variation Suite, is an integrated collection of high-performance analytic tools for managing, analyzing, and visualizing complex genomic data. SVS offers a rich, multi-dimensional approach to studying the genomics of almost any species.

Horticulture Research Nanjing, Jiangsu, China www.nature.com/hortres

620

Horticulture Research, published by Nature Publishing Group and Nanjing Agricultural University, is an open-access international journal devoted to publish original research and reviews on basic biology of horticultural plants. The journal aims to become a highly respected and trusted source of cutting-edge information in the field of horticulture. Please visit www.nature.com/hortres for submission instruction and published papers.

123

IBM Foster City, CA www.ibm.com

107

IBM is a globally integrated technology and consulting company headquartered in Armonk, New York. With operations in more than 170 countries, IBM develops and sells software and systems hardware and a broad range of infrastructure, cloud and consulting services. Today, IBM is focused on four growth initiatives - business analytics, cloud computing, growth markets and Smarter Planet. IBMers are working with customers around the world to apply the company's business consulting, technology and R&D expertise to build systems that enable dynamic and efficient organizations, better transportation, safer food, cleaner water and healthier populations.

Illumina, Inc. San Diego, CA www.illumina.com

119

Illumina provides innovative sequencing and array-based solutions for genotyping, copy number variation analysis, methylation studies, gene expression profiling, and low-multiplex analysis of DNA, RNA, and protein. Our agrigenomics technologies help plant and animal breeders and researchers identify desirable traits, leading to healthier and more productive crops and livestock.

iPlant Collaborative Tucscon, AZ www.iplantcollaborative.org

231

The iPlant Collaborative is an NSF-funded (#DBI-0735191) cyberinfrastructure project that provides computation, data storage, and bioinformatics tools and platforms that serve researchers and educators in the life sciences. These resources service investigations in all domains of life, and can be customized to meet a broad variety of research and educational objectives. iPlant's ultimate goal is to enable access to computational resources, enabling investigators or educators to solve problems that would otherwise be difficult or impossible to address. Free accounts are available at user.iplantcollaborative.org

KAPA Biosystems Wilmington, MA www.kapabiosystems.com

324

Kapa Biosystems is a life science reagents company that utilizes a proprietary directed evolution technology to optimize enzymes for PCR, real-time PCR and next-generation sequencing applications. Industry thought leaders are presenting at Kapa’s workshop Tuesday, 1:30 pm in the Towne Room regarding Kapa’s new products for RNA and DNA sequencing, and a new DNA polymerase for qPCR probe-based assays that is extremely resistant to common inhibitors in plant and animal samples. Visit www.kapabiosystems/PAG to learn more about the program and guest speakers. If you can't make the workshop, visit booth 324 to find out more about Kapa's products.

124

KeyGene Rockville, Maryland, USA www.keygene.com

309

KeyGene is a leader in trait discovery, molecular breeding and phenotyping,and uses its integrated and proprietary technology platforms to enable high-value product development for its partners in the industry. KeyGene adds value to any partnership with its innovative science, solid product concepts and most of all, its end-to-end capabilities. Leads to Seeds track record: * Numerous KeyGene-enabled seed products * Hundreds of commercially used Biomarkers * Long-term strategic partnerships KeyGene is headquartered in Wageningen, the Netherlands, with its North and South American headquarters located in Rockville, Maryland, USA and a joint-lab at the Shanghai Institute of BiologicalSciences in Shanghai, China.

Kyazma B.V. Wageningen, The Netherlands www.kyazma.nl

619

Kyazma® works on implementing powerful statistical genomics methods into easy to use, stable and fast software tools. JoinMap® and MapQTL® are Kyazma's well-known genetic mapping and QTL analysis software products. Kyazma also organizes courses on genetic mapping and QTL analysis.

Labcyte Inc. Sunnyvale, CA www.labcyte.com

327

Labcyte, a global biotechnology tools company, is revolutionizing liquid handling. Echo liquid handling systems use sound to precisely transfer liquids without contact, eliminating the use of pipettes. Labcyte instruments are used worldwide throughout the pharmaceutical industry, diagnostic companies, genome centers, genomic service companies, biotechnology firms, contract research organizations, and academic institutions. Our customers work across a wide spectrum of scientific research, including drug discovery, genomics, proteomics, diagnostics, precision medicine, and imaging mass spectrometry. www.labcyte.com.

LabSource, Inc. Northlake, IL www.labsource.com

529

LabSource has been serving science since 1989 as a distributor of laboratory supplies and equipment with added focus on hard to find consumables and labware for specialty applications in lab automation and genomics. See for yourself how LabSource can help add value as a supplier for your needs.

125

Lathrop Engineering Inc. San Jose, CA www.lathropengineering.com

621

Lathrop is a full-service contract product development firm specializing in end-to-end development solutions from concept through to commercial product. We offer complete design, engineering, and manufacturing support: program management, industrial design, mechanical engineering, software and electronic engineering, optics design/engineering, and system analysis for life science/diagnostic instrumentation and medical devices. ISO9001

LC Sciences LLC Houston, TX www.lcsciences.com

325

LC Sciences offers RNA sequencing and custom microarray services for nucleic acid profiling and functional analysis. Illumina sequencing technology provides an excellent tool for microRNA/small RNA discovery in any species. Our flexible µParaflo® custom microarrays enable reliable microRNA/small RNA profiling. We have standard arrays designed for all species listed in the latest release (21) of miRBase and the Plant MicroRNA Database. Or create a completely custom array to suit your specific research goals. Gene Expression and QPCR assay services also available.

LemnaTec GmbH Aachen, NRW, Germany www.lemnatec.de

209

LemnaTec’s team of scientists develops comprehensive hard- and software solutions for Plant Phenomics, high-throughput and high-content screening of plants, seedlings, insects and other organisms. Digital images are primarily taken by the Scanalyzer systems PL, HTS and 3D in biologically significant wavelengths: RGB, PSII-Fluorescence, NIR, IR and hyper spectral cameras.

Lexogen GmbH Vienna, Österreich, Austria www.lexogen.com

404

Lexogen is an Austrian transcriptomics and NGS company located at the Campus Vienna Biocenter. Lexogen is developing technologies to enable complete transcriptome sequencing. Our portfolio includes kits and services for RNA sequencing sample preparation. The SENSE™ Total/mRNA-Seq Library Prep Kit generates ready-to-sequence libraries with superior strand-specificity from total RNA within just 4 hours. QuantSeq™ 3'mRNA-Seq Library Prep Kit is a fast, strand-specific and cost-effective protocol for sequencing of fragments close to the 3’ end of the polyadenylated RNA. TeloPrime™ Full-Length cDNA Amplification Kit generates full-length cDNA from total RNA. Most kits are available for Illumina and Ion Torrent platforms.

126

LGC Hoddesdon, Herts, United Kingdom www.lgcgroup.com/genomics

302

LGC Genomics is unique in the genomics market place with respect to our position both as a laboratory services provider and a developer of proprietary chemistries and instrumentation to drive cost efficient genomics solutions. “We use what we sell and sell what we use”. We have the largest genotyping lab in the world in the UK with labs in Berlin-Germany, Boston-USA and London-UK.

Life Technologies™ (Now Thermo Fisher Scientific) Carlsbad, CA www.lifetechnologies.com/agbio

111

As a member of the Thermo Fisher Scientific family of brands, Life Technologies™ products and services offer high-quality, innovative life science solutions for every plant and animal research or breeding lab.

Lucigen Corporation Middleton, WI www.lucigen.com

105

At Lucigen, we deliver advanced molecular biology products and services to life scientists by inventing solutions to the most difficult problems in Next Gen Sequencing, DNA cloning, amplification, and protein expression.

Macrogen Seoul, Korea, South dna.macrogen.com/eng/

326

Macrogen is dedicated to offering publication quality Next-Generation Sequencing services at the most affordable cost through a whole menu of applications including: whole genome, transcriptome, metagenomic sequencing and many other applications are available with optimized analysis services pipelines. Our large capacity allows us to offer expedited services to all of our clients.

Maverix Biomics, Inc. San Mateo, CA www.maverixbio.com

328

Maverix provides scientists with an easy-to-use cloud-based solution for data analysis and visualization. Optimized to explore the role of RNA in cell regulation, the Maverix Analytic Platform allows researchers to ask questions, build communities of discovery, and integrate in context with the latest viral, bacterial, vertebrate, and plant genomic data.

127

MO BIO Laboratories, Inc. Carlsbad, CA, USA www.mobio.com

220

MO BIO Laboratories, Inc. has developed innovative tools for researchers in molecular biology since 1993. A global leader in solutions for soil and microbial nucleic acid purification, MO BIO's Power kits contain patented Inhibitor Removal Technology® for removal of PCR inhibiting substances during the nucleic acid purification procedure. MO BIO’s products enable isolation of high quality, pure nucleic acids from challenging samples including soil, water, plants, seeds stool, biofilm, microbial cultures and more. Our focus is quality products that work, save time and function for all sample types, not just easy ones.

MOgene, LC St. Louis, MO www.mogene.com

225

MOgene's mission is to provide “best in class” services to its partners in deploying genomic capabilities to bring critical solutions to their operations. Services provided include Microarrays using Agilent platform, NextGen sequencing using Roche's 454 FLX plus, Illumina MiSeq and HiSeq, Sequence capture, Real-time PCR using ABI 7900 platform, RNA/DNA isolation, and Bioinformatics.

Monsanto Company St. Louis, MO www.monsanto.com

421

Monsanto is one of the world’s leading agricultural technology companies. We develop better seeds through a mixture of traditional breeding and world-class biotechnologies. Every day we invest over $3 million in research to help the world’s farmers produce more with less resources.

MYcroarray Ann Arbor, MI www.mycroarray.com

615

MYcroarray is a leading manufacturer of custom molecular probes for genomic applications, including capture baits libraries for targeted sequencing, fluorescent probes libraries, oligonucleotide libraries and oligonucleotide microarrays. We are the only provider of truly error-free oligonucleotides for synthetic biology. We also offer microarray hybridization, sequence capture and sequence discovery services.

NanoString Technologies Seattle, WA www.nanostring.com

102

NanoString Technologies is a privately-held provider of life science tools for translational research and developer of molecular diagnostic products. The company’s nCounter® Analysis System delivers highly-multiplexed, direct profiling of individual molecules in a single reaction without amplification. Applications include Gene Expression, Single-Cell, miRNA and CNV.

128

National Center for Genome Resources (NCGR) Santa Fe, NM ncgr.org

402

The National Center for Genome Resources in Santa Fe, NM, a leader in NGS and data analysis, offers Bioinformatics-in-a-Box™, a web-based system for Bioinformatics novices to overcome barriers to NGS analysis 365x24. With built in data management, compute power and secure social networking capabilities, knowledge discovery has never been faster!

New England Biolabs, Inc. Ipswich, MA, www.neb.com

125

New England Biolabs, Inc. leads the industry in the discovery and production of enzymes for molecular biology applications. NEB has a large and growing range of NEBNext® kits for sample preparation for next-generation sequencing, including kits for fast, low-input library preparation for DNA, RNA and microbiome sample enrichment. Products for PCR include Q5® High-Fidelity DNA Polymerase and OneTaq® DNA Polymerase, for high-performance, reliable amplification regardless of GC content. NEB’s expertise in developing and manufacturing products of the highest quality, coupled with best in class technical support makes NEB a first choice for customers demanding optimized reagents for advanced technologies.

New Phytologist Lancaster, United Kingdom www.newphytologist.org

530

New Phytologist is an international journal offering rapid publication of high-quality, original research in plant science. Owned by the non-profit-making New Phytologist Trust we are dedicated to the promotion of plant science. Our activities range from funding symposia and workshops to ensuring free access for our prestigious Tansley reviews.

NIH, NLM, NCBI Bethesda, MD www.ncbi.nlm.nih.gov

618

NCBI provides free access to biomedical molecular, literature and medical genetics databases including PubMed, Gene, Nucleotide, Protein, dbSNP, ClinVar, MedGen, and the Genetic Testing Registry. It also provides analysis tools for sequence alignment (BLAST), structure comparison (VAST), exon and variation mapping (Splign, Variation Reporter, Remap).

129

Norgen Biotek Corp Thorold, Ontario, Canada www.norgenbiotek.com

333

Norgen Biotek provides researchers with innovative kits for Molecular Diagnostics (MDx), Sample Collection/Preservation [from Urine, Stool, Plasma/Serum/Blood, Saliva] and microRNA/RNA/DNA/Protein Purification/Clean-Up (spin-column/96-well). Our kits feature exceptional quality, ease-of-use and sensitivity. Norgen Biotek provides researchers with the tools to address any sample preservation and preparation challenge. *Best-in-Class Plant RNA/DNA Purification*

Novogene Bioinformatics Technology Co., Ltd Beijing, China www.novogene.com/en/

612

Novogene is the leading genomic solution privider in China. Equipped with cutting-edge high-throughput sequencing platforms, including 10 Hiseq X, 10 Hiseq2500/2000, 1 NextSeq 500, and 4 Miseq sequencing systems, Novogene can provide service including Whole Genome Resequencing, Whole Exome Sequencing, mRNA Sequencing, non-coding RNA Sequencing and Epigenome Sequencing. Within the past three years, Novogene has completed numerous major projects, with findings acknowledged and published by top-ranked journals such as Science and Nature series.For more information, go to visit our website: www.novogene.com/en/

NRGene Ness Ziona, Israel nrgene.com

504

NRGene is a computational genomics company that analyzes genomic Big-Data for the enhancement of field performance of crop plants. By employing experienced algorithm designers, software engineers, plant breeders and geneticists, NRGene developed DeNovoMAGIC(TM) and GenoMAGIC(TM) . These ground-breaking computational tools support most sophisticated R&D processes in leading seed companies and academia. These tools reconstruct and compare full genomes of unlimited number of individual plants, and associate genome variability with field performance. NRGene's tools were proven successful in analyzing most complex and diverse genomes, as wheat, maize and forestry, implemented in sophisticated research projects targeting gene discovery, genome-wide-association-mapping and genomic selection.

Omega Bio-tek Norcross, GA www.omegabiotek.com

109

Omega Bio-Tek manufactures a complete line of DNA|RNA isolation kits utilizing magnetic beads and silica filter technology for both high throughput facilities and individual labs. Offering over 10 different DNA and RNA Purification systems for plant samples, Omega Bio-tek provides an affordability and selection that is unmatched.

130

Pacific Biosciences Menlo Park, CA www.pacificbiosciences.com

230

The PacBio® RS II Sequencing System generates long reads over 20,000 bp with high confidence for applications from targeted sequencing to improving large reference genomes. Additional capabilities include de novo genome assembly, data-driven genome annotation, isoform sequencing, understanding of structural variations, targeted gene family surveys, complete BAC sequencing, and epigenetic insights through detected base modification.

Persephone c/o Ceres, Inc. Thousand Oaks, CA, www.persephone.net

205

Ceres, Inc. is re-defining the genome browser with its Persephone software, which offers powerful, new ways to explore both plant and animal genomic data. Persephone has an intuitive, easy-to-understand interface that provides multiple chromosome views, trait ontologies, genetic maps, real-time gene translation and more. Cloud-based service and in-house installations are available. FREE, 21-day trial to PAG attendees. Stop by Booth 205 for details.

Phenome Networks Rehovot, Israel, Israel www.phenome-networks.com

409

Phenome Networks is a next-generation bioinformatics company with a state-of-the-art platform that organizes the wealth of genotype-to-phenotype data generated in the plant breeding process and genetic research in commercial companies and academic institutions. Its Project Unity is a unique collaborative network to host, manage, analyze and share private as well as all public domain genotypic and phenotypic research data in a common and unified platform, unleashing the potential of improved plant varieties. Project Unity is FREE FOR ACADEMIC USE.

Phenospex Heerlen, Netherlands www.phenospex.com

525

Phenospex is a biotech company, which develops and provides hard- and software for automated plant screening and plant phenotyping especially for the application under field- or semi field conditions. We are a mixed team of plant biologists, engineers, software developers and data specialists. Our key objective is to provide fully automated and integrated phenotyping platforms, which delivers high quality data and analysis tools in order to extract knowledge to answer scientific questions.

131

Photon Systems Instruments (PSI) Brno, Czech Republic www.psi.cz

502

Photon Systems Instruments (PSI) develops and provides sophisticated, high-end scientific instrumentation for research in biological sciences. PSI provides devices for laboratory, greenhouse and field research in areas of plant and algal biotechnology. Our key focus is to provide solutions in the field of advanced imaging as kinetic chlorophyll fluorescence and reflectance techniques, intelligent growth chambers, high-tech photobioreactors, and customized platforms for high-throughput plant phenotyping. Our expertise in high-precission plant phenotyping is in manufacturing fully automated platforms for high-throughput monitoring of plant performance and architecture in controlled environments, greenhouse or in the field.

PhytoTechnology Laboratories Shawnee Mission, KS www.phytotechlab.com

227

PhytoTechnology Laboratories® is a global supplier of microbiological media, biochemicals, plant tissue culture media, and laboratory supplies for the plant pathology, plant molecular biology, and plant science markets. Visit our booth for more details and information about our products and company. For unmatched quality & service, choose PhytoTechnology Laboratories®.

Plant Genomics Outreach Consortium Columbia, MO www.goo.gl/O6dI2

407

Outreach for public plant genome data resources including: AFFRC RiceXPrO and RAP-DB; Crop Ontology; Gramene; JCVI Arabidopsis AIP and Medicago; Legume Information Services; MaizeGDB; MainLab (GDR (Rosacea), other crops); OryzaBase; Plant Genome DataBase-Japan (PGDBJ; Plant Ontology; SoyBase; SoyKB. The website provides links to these resources, and their presentations at PAG XXIII, beginning Dec 5, 2014, with updates up to time of the meeting.

Progeny Software, LLC Delray Beach, FL www.progenygenetics.com

623

Progeny LIMS is a modular platform that allows clients to purchase only the software components and custom services that they need. The interface ties together genotype, phenotype and sample information to provide a powerful reporting tool for research and lab environments. The database is powered by an SAP SQL Anywhere backend database which can be configured using an intuitive non-programming admin interface. Accessible via web, Windows or API this platform will aid in the data management of plants, animals, samples and the processing of DNA maintaining audits and a chain of custody that is in line with regulatory standards.

132

Promega Corporation Madison, WI www.promega.com

212

As a world leader in applying genomics and cellular biology expertise to develop high value products for the Life Sciences, Promega Corporation understands that today's Genomic's challenges require creative solutions. Stop by our booth to learn more about successful approaches and tools for enabling your genomics research.

Qubit Systems Kingston,, Ontario, Canada www.qubitphenomics.com/

424

Qubit Systems specializes in high throughput screening systems for plant phenotyping. Our PlantScreenTM systems combine imaging stations for chlorophyll fluorescence kinetics, thermal, NIR, hyperspectral, RGB and morphometric analysis. Automated watering, weighing and nutrient delivery are optional. We offer conveyor systems, robotic XYZ systems fitted to your growth cabinets and green houses or field screening systems customized to your application. We also design intelligent growth cabinets and greenhouses for large and small scale cultivation. Visit our website or email us at [email protected] for a free consultation.

RainDance Technologies Billerica, Massachusetts www.RainDanceTech.com

430

RainDance Technologies is making complex genetics simple. The company’s ultra-sensitive genomic tools enable better research of novel non-invasive Fluid Biopsy™ applications that should result in more accurate, reliable, cost-effective and early detection of cancer, inherited and infectious diseases. Major research institutions and laboratories around the world rely on RainDance systems’ performance. Based in Billerica, Massachusetts, the company supports customers using RainDrop® Digital PCR and ThunderStorm® Targeted Next-Generation Sequencing Systems through its international sales and service operations as well as a global network of distributors and commercial service providers.

RAPiD Genomics, LLC Gainesville, FL www.rapid-genomics.com

116

RAPiD Genomics is a DNA genotyping & genetic data analysis company. We deliver tools for breeders & researchers to characterize genetic variation at high throughput and low cost. We require low amounts of DNA and no need of expensive proprietary equipment. We also support our clients by applying proprietary methods of genetic data analysis to predict the value of a plant or animal solely based on their genetic composition. Thus, we offer the full suite of tools and analytical methods to characterize genetic variation and/or breeding.

133

Roche Diagnostics Corporation Indianapolis, IN www.nimblegen.com

219

Roche Sequencing as a unit of Roche Diagnostics, is an innovator in the life sciences market and a pioneer in Next Gen Sequencing. In addition to 454 Life Sciences NGS products, Roche develops, markets and sells SeqCap target enrichment probe pools for studies of genomic DNA, RNA and methylation.

Sage Science Inc. Beverly, MA www.sagescience.com

228

Sage Science develops products for sample preparation in life science research. Featuring the Pippin PrepTM and BluePippinTM DNA size selection systems, Sage’s platform automates preparative agarose gel electrophoresis, providing an alternative to manual gel purification. The Pippin systems collect DNA fragment size ranges, in buffer, according to user-input values.

SGI-DNA San Diego, CA www.sgidna.com

532

SGI-DNA, a division of Synthetic Genomics, Inc (SGI), was founded in 2013 and is headquartered in La Jolla, CA. Building on the scientific advancements and breakthroughs from leading scientists such as J. Craig Venter, Hamilton Smith, Clyde Hutchison, and Dan Gibson, SGI-DNA provides powerful and versatile tools for DNA design and assembly. Achieve new possibilities in your molecular biology workflow with our reagents, instruments, services and software. We are committed to reducing barriers associated with synthetic biology by leveraging the technology developed at the J. Craig Venter Institute and Synthetic Genomics, Inc

Source BioScience Nottingham, Please Select, United Kingdom www.sourcebioscience.com

526

Source BioScience are leaders in conventional and next generation sequencing, gene expression and genotyping services and offer a comprehensive portfolio of pre-made clones and antibodies. We also provide controlled environment testing for pharmaceutical stability storage at all World Climatic ICH conditions. We are CPA and GxP accredited.

134

SPEX SamplePrep, LLC Metuchen, NJ www.spexsampleprep.com

233

SPEX SamplePrep, has been providing superior sample preparation equipment since 1954. Our Geno/Grinder® is the ultimate, high-throughput tissue homogenizer. It’s specifically designed for vigorous, up-and-down shaking of deep-well titer plates and sample vials from 0.6 to 50mL. We are also featuring our Freezer/Mill®, a powerful cryogenic mill, designed for extracting DNA/RNA from samples while preserving its integrity. It effectively grinds through tough, temperature sensitive plant and animal tissue through the use of magnetically-driven impactors. Visit us at booth 233 to learn more about our products.

Springer New York, NY, United States www.springer.com

208

Get hands-on experience with Springer’s multi-format publishing model: print – eBook – MyCopy (printed eBooks for US$ 24.99). Our mission is to support your research. Come browse our books in your preferred format: print, online, or on an iPad. Get Read. Publish With Springer.

Swift Biosciences Ann Arbor, MI www.swiftbiosci.com

427

Swift Biosciences provides innovative technologies for genomics and next generation sequencing (NGS). Accel-NGS products enable new applications and streamline traditional workflows for NGS. Multiple kits provide sample prep options for DNA and RNA from a variety of sample types. We specialize in unique applications and difficult to process samples down to picogram levels.

The Genome Analysis Centre (TGAC) Norwich, Norfolk, United Kingdom www.tgac.ac.uk

122

The Genome Analysis Centre (TGAC) is a research institute focused on the application of state of the art genomics and computational biology to advance plant, animal and microbial research to promote a sustainable bio-economy. TGAC is a hub for innovative bioinformatics founded on research, analysis and interpretation of multiple, complex data sets. We host one of the largest computing hardware facilities dedicated to life science research in Europe. TGAC also offers advanced training for researchers and scientists, and engages with the public about science and its impact.

135

Thermo Fisher Scientific (Life Technologies™ products) Carlsbad, CA, USA www.lifetechnologies.com/agbio

111

As a member of the Thermo Fisher Scientific family of brands, Life Technologies™ products and services offer high-quality, innovative life science solutions for every plant and animal research or breeding lab. Go to lifetechnologies.com/agbio to learn more.

TimeLogic Carlsbad, CA, USA www.timelogic.com

418

For the past 15 years, TimeLogic has been providing high-throughput computing solutions for the bioinformatics community. Our FPGA-based DeCypher® systems deliver industry-leading price to performance and provide faster results and lower operational costs than alternative solutions. Find out more and schedule your own benchmark tests at www.timelogic.com.

Ubiquitome Christchurch, New Zealand www.ubiquitomebio.com

625

Ubiquitome’s vision is to give the world ubiquitous access to genomic information. We do this by empowering professionals with mobile genetic analysis tools such as the Ubiquitome Freedom4. The company is led by experienced life sciences entrepreneur Dr Paul Pickering. The Freedom4 represents a major advance in qPCR systems: the first commercially available handheld, battery powered real-time PCR device. Light and compact, the Freedom4 can operate on battery for up to six hours and deliver you remote gold standard qPCR performance in as little as 50 minutes.

UVP, LLC Upland, CA www.uvp.com

509

UVP LLC, An Analytik Jena Company, manufactures BioImaging Systems including BioSpectrum® System: advanced/automated for plant, chemiluminescence, fluorescence, NIR, colorimetric imaging/analysis. ChemiDoc-It®TS2 Imager: integrated computer, touch screen, cooled CCD camera optimize chemi Western blot/gel imaging. iBox® Explorer Imaging Microscope: macro to micro detection of fluorescent markers in vivo for cancer/tumor research. UVP manufactures ultraviolet lamps, UV transilluminators, UV crosslinkers and cabinets, hybridization ovens, HEPA/UV PCR hoods. Analytik Jena products include nucleic acid extraction systems, standard/real-time qPCR thermal cyclers, homogenizers and liquid handling/robotic systems. Optimized DNA/RNA extraction, isolation and enrichment kits for use with starting materials including plants, seeds, rodent tails, more.

136

V & P Scientific, Inc. San Diego, CA www.vp-scientific.com

318

V&P is a custom designer and manufacturer of a variety of tools for liquid transfer and mixing. Small volume liquid transfer Pin Tools for nanoliter to microliter volumes, use manually or with automation. Manual Microarrayer allows creation of custom arrays on slides. Best Magnetic Bead Separation devices for microplates, tubes, bottles. Unique Magnetic Stirrers mix and heat viscous liquids and slurries in bottles, vials, tubes, microplates. “PowerMag” Stir Bars, completely encapsulated stir bar with neodymium, strongest available permanent magnet. Mixing Reservoirs for keeping particulates in suspension while pipetting. Increase manual throughput with Aspiration and Dispense Manifolds for microplates and tubes.

VHLGenetics Wageningen, The Netherlands www.vhlgenetics.com

207

VHLGenetics is a leading genetic service provider with three business units. For more than 25 years, DNA has been the core of the organization, serving customers with DNA services in non-human species. Please visit our website www.vhlgenetics.com for more information.

WPS De Lier, The Netherlands www.wps.eu

431

The quiet achiever in HT Plant Phenotyping - some of the largest, most respected and earliest facilities are equipped with WPS technologies for over a decade. Respecting client confidentiality, WPS has gone about its business with 100+ automation platforms installed including research into plant stress response, plant growth analysis, field-like phenotyping, trait discovery, root phenotyping, high throughput phenotyping and plant physiological analysis . A worldwide reputation for design innovation, engineering excellence, outstanding project management, industry leading customer support and affordability has seen WPS emerge as the preferred technology provider for professional and effective HT plant phenotyping facilities around the world.

Zymo Research Corp. Irvine, CA www.zymoresearch.com

533

Since 1994, Zymo Research has been offering innovative, quality, and easy-to-use tools for Epigenetics research and DNA/RNA purification. As “The Epigenetics Company” Zymo Research is an industry leader in epigenetic product and service development. Our products are well known for their quality, affordability, efficiency, and unparalleled technical and customer support.

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Abstracts Table of Contents Category Page # Workshop Abstracts:

Abiotic Stress 144 Allele Mining 144

Analysis of Complex Genomes 145 Animal Epigenetics 145 Animal Genetics 145 Applied Tritceae Genomics 146 Aquaculture 1 146 Arabidopsis Information Protocol 147 Arthropod Genomics 148 Banana Genomics 148 Bioenergy Grass Genomics 148 Bioenergy -Towards Increasing Oil in Nonseed Biomass 149 Bioinformatics 149 Brachypodium Genomics 150 Brassicas 150 Buffalo 151 Cacao Genome Sequencing 151 Cassava Genomics 152 Cat & Dog 153 Cattle/Sheep/Goat 153 Cattle/Swine 155 Citrus 156 Climate Change and ICRCGC 156 Coffee Genomics 157 Comparative Genomics 157 Components of Apomixis 158 Compositae 158 Computational Gene Discovery 159 Cool Season Legumes 159 Cotton Genome Initiative 160 CSSA: Translational Genomics 160 Cucurbit 160 Cultivating Broader Impact Programs 161 Degraded DNA and Paleogenomics 161 Development of Application of Transgenic Tech in Ag 162 DNA Subway 162 Domestication Genomics 162 Ecological Genomics 162 Engineering NUE 163 Equine 1 & 2 163 Evolution of Genome Size 164 Exploring Phytobiomes 164 Flax Genomics 164 Forage, Feedstock’s & Turf 165 Forest Trees 165

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Abstracts Table of Contents Workshop Abstracts (continued):

Fruit/Nuts 167 Functional Genomics 168 Fungal Genomics 168 Gene Expression Analysis 169 Gene Introgression 170 Genome annotation resources at the EBI 170 Genome management and analysis with CoGe 171 Genomic Selection and Genome Wide Assoc. Studies 171 Genomics of Genebanks 171 Genomics-Assisted Breeding 171 Genomics of Non-Classical Model Animals 172 Genomics of Plant Development 172

GMOD 172 Gramene Project 173 Grape Genome Initiative 173 Grass Genome Initiative 174 Grasslands (Lolium Genome Initiative) 174 Host-Microbe Interaction 174 Intl Goat Genome Consortium 175 Intl Rice Informatics Consortium 175 Intl Sheep Genome Consortium 176 Intl Wheat Genome Sequencing Consortium (IWGSC) 176 Intl Phytomedomics and Nutriomics Consortium (ICPN) 177 iPlant Collaborative 177

IWGSC – Standards and Protocols 177 Legumes 179 Maize 179 Managing Crop Phenotype Data 179 Mutation Screening 180 NCBI Genome Resources, Tools and Annotation 180

New Approaches for Dev. Disease Resistance in Cereals 180 Next Generation Genome Annotation and Analysis 180 Non-Seed Plants 181 NSRP-8 Animal Genome 181 Oats 181 Organellar Genetics 182 Ornamentals 182 Palm Genomics & Genetics 183 Perennial Grasses 184 Pine Genome Reference Sequence 184 Plant and Animal Paleogenomics 184 Plant Chromosome Biology 185 Plant Cytogenetics 185 Plant Dormancy 186 Plant Genomics Engineering 186 Plant Interactions with Pests and Pathogens 186

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Abstracts Table of Contents Workshop Abstracts (continued):

Plant Phenotypes 187 Plant Reproductive Genomics 187 Plant Transgene Genetics 188 Polyploidy 188 Population & Conservation Genomics 189 Poultry 189 Proteomics 191 QTL Cloning 191 Recombination - mechanisms 192 Resources for Undergraduate Education in Genomics 192 Rice Functional Genomics 193 Root Genomics 193 Sequencing Complex Genomes 193 Sex Chromosomes 194 SGN – Solanaceae Genomes, Tools Toolbox 194 Small RNA 194 Solanaceae 195 Somatic Genome 195 Sorghum and Millet 195 Soybean Genomics 196 Genomics of Tissue Regeneration in Plants & Animals 196

Speciation Genomics 199 Statistical Genomics 199 Sugar Beet 199 Sugar Cane (ICSB) 200 Sugar Cane Sequencing Initiative 200 Swine 201 Synthetic Biology 201 Synthetic Biology and Ontologies 202 Systems Genomics 202 The National Plant Genome Initiative: 203

Transposable Elements 203 Tripal Database Network and Initiatives 204 Triticeae 1 & 2 204 UCSC Genome Browser 205

Weedy and Invasive Plant Genomics 206 What Bottlenecks in High-throughput Phenotype Research 206

Poster Abstracts: Bioenergy 207 Genome Technology:

Sequencing 208 High-throughput Methods 209

Large Insert Libraries 211 Other Genome Methodology 212

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Abstracts Table of Contents

Poster Abstracts (continued): Genome Mapping, Tagging & Characterization:

Rice 213 Maize, Sorghum, Millet, Sugar Cane, and related 215 Wheat, Barley, Oat and Related 220 Legumes, Soybeans, Common Beans 230 Brassicas, Arabidopsis 239 Tomato, Potato, Pepper 243 Fruit Species 246 Sunflower/Oilseeds 252 Cotton 252 Forest Trees 253 Aquaculture 256 Cattle 258

Equine 263 Swine 265 Sheep 268 Canine & Feline 269 Poultry 269

Insects 272 General Comparative 272 Natural Populations 274 Microbes & Pathogens 294

Marker Systems Diversity: SSR 276 SNP 276

Genes and Pathways (Gene Expression, Proteomics): Cellular Processes and Regulatory Networks 277 Functional Analysis 281 Microarrays 286

Transformation 286 Bioinformatics:

Databases 287 Software 290 Algorithms 292 Other / Other Species 294

Computer Demo Abstracts 302

Author Index 305

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W001: Abiotic Stress Opening Remarks

Henry T Nguyen, University of Missouri, Columbia, MO W002: Abiotic Stress Phosphorus-Starvation Tolerance 1 Enhances Phosphorus Acquisition and Sorghum Performance on Low-Phosphorus Soils

Jurandir Magalhaes1, Barbara Hufnagel2, Sylvia M Souza1, Lidianne Assis3, Claudia Guimaraes1, Willmar Leisser4, Gabriel C Azevedo1, Barbara Negri1, Brandon Larson5, Jon Shaff6, Maria Marta Pastina1, Beatriz Barros1, Eva Weltzien-Rattunde7, Fred Rattunde7, João Herbert Viana1, Randy Clark8, Alexandre Falcão9, Rodrigo Gazaffi10, Antonio Augusto F Garcia10, Robert Schaffert1 and Leon Kochian6, (1)Embrapa Maize and Sorghum, Sete Lagoas, Brazil, (2)USDA-ARS/Embrapa Maize and Sorghum, Ithaca, NY, (3)Universidade Federal do Acre, Rio Branco, Brazil, (4)University of Hohenheim, Stuttgart, Germany, (5)USDA-ARS, Ithaca, NY, (6)Robert W Holley Center, USDA-ARS & Cornell University, Ithaca, NY, (7)ICRISAT, Bamako, Mali, (8)Cornell University, Ithaca, NY, (9)University of Campinas, Campinas, Brazil, (10)ESALQ-USP, Piracicaba, Brazil W003: Abiotic Stress Function and Diversity of GmACP1, an Important Factor Modulating Soybean Tolerance to Low-P Stress

Deyue Yu, Nanjing Agricultural University, Nanjing, China

W004: Abiotic Stress Gene Expression and Protein-Protein Interaction Analysis for Understanding Drought Tolerance Mechanism in Chickpea (Cicer arietinum L)

Himabindu Kudapa, Abirami Ramalingam and Rajeev K Varshney, ICRISAT, Hyderabad, India W005: Abiotic Stress Direct Signaling Crosstalk Between Brassinosteroid and Abscisic Acid Regulates Root Growth Maintenance during Water Deficits in Soybean

Li Lin, University of Missouri, Columbia, MO W006: Abiotic Stress Role of MicroRNAs in Plant Abiotic Stress Responses

Ramanjulu Sunkar, Oklahoma State University, Stillwater, OK W007: Abiotic Stress Accessing Multi-Tiered and Cell-Specific Regulation of Responses to Abiotic Stress in Crops

Germain C Pauluzzi, University of California, Riverside, Riverside, CA

W008: Allele Mining Dissection of Genotypic and Phenotypic Variation in Shrub Willow (Salix purpurea)

Fred E Gouker1, Ran Zhou2, Luke Evans2, Eli Rodgers-Melnick3, Stephen DiFazio2 and Lawrence Smart1, (1)Cornell University, Geneva, NY, (2)West Virginia University, Morgantown, WV, (3)Cornell University, Ithaca, NY W009: Allele Mining A First Generation Hapmap of Chickpea for Mining Superior Alleles for Crop Improvement

Anu Chitikineni1, Weiming He2, Pooran M Gaur1, Jainbo Jian2, Dadakhalandar Doddamani1, Manish Roorkiwal1, Abhishek Rathore1, Narendra P Singh3, Sushil Chaturvedi4, Swapan K Datta5, Gengyun Zhang2, Jun Wang2 and Rajeev K Varshney1, (1)ICRISAT, Hyderabad, India, (2)Beijing Genomics Institute (BGI), Shenzhen, China, (3)All India Coordinated Research Project on Chickpea (AICRP), ICAR, Kanpur, India, (4)Indian Institute of Pulses Research, Kanpur, India, (5)Indian Council of Agricultural Research (ICAR), New Delhi, India W010: Allele Mining The Secrets of Cold Tolerance at the Seedling Stage and Heading in Rice As Revealed By Association Mapping

Georgia C Eizenga1, Ehsan Shakiba2, Farman Jodari3, Sara Duke4, Pavel Korniviel5, Aaron Jackson1, Jason Mezey5 and Susan McCouch5, (1)USDA-ARS Dale Bumpers National Rice Research Center, Stuttgart, AR, (2)University of Arkansas, Stuttgart, AR, (3)California Cooperative Rice Research Foundation, Biggs, CA, (4)USDA-ARS, College Station, TX, (5)Cornell University, Ithaca, NY

W011: Allele Mining Association Studies Unravel a Link Between Yield Components and Disease Resistance of Rice

Xueyan Wang, University of Arkansas Rice Research and Extension Center, Stuttgart, AR, Melissa Jia, DB NRRC, Stuttgart, AR, Pooja Ghai, Arkansas state university, Jonesboro, AR, Fleet N Lee, Rice Research and Extension Center, Stuttgart, AR and Yulin Jia, USDA-ARS, Stuttgart, AR W012: Allele Mining HetMappS: Heterozygous Mapping Strategy for High Resolution Genotyping-by-Sequencing Markers

Katie Hyma1, Paola Barba2, Minghui Wang3, Jason Londo4, Matthew P Hare5, Charlotte Acharya3, Sharon E Mitchell3, Qi Sun6, Bruce Reisch7 and Lance Cadle-Davidson4, (1)Genomic Diversity Facility, Cornell University, Ithaca, NY, (2)Plant Breeding and Genetics Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, (3)Cornell University, Ithaca, NY, (4)USDA-ARS Grape Genetics Research Unit, Geneva, NY, (5)Department of Natural Resources, Ithaca, NY, (6)Institute for Genomic Diversity, Cornell University, Ithaca, NY, (7)Cornell University, Geneva, NY W013: Allele Mining Random Tagging GBS in Kiwifruit

Elena Hilario1, Lorna Barron1, Cecilia H Deng1, Paul Datson1, Nihal De Silva1 and Marcus Davy2, (1)The New Zealand Institute for Plant & Food Research Limited, Auckland, New Zealand, (2)The New Zealand Institute for Plant & Food Research Limited, Te Puke, New Zealand

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W014: Analysis of Complex Genomes BioNano Genome Map of a Wheat Chromosome Arm: A Tool to Support Sequence Assembly in a Complex Genome

Hana Simkova1, Alex Hastie2, Helena Stankova1, Jan Vrana1, Marie Kubaláková1, Paul Visendi3, Satomi Hayashi4, Ming-Cheng Luo5, Jacqueline Batley6, David Edwards4 and Jaroslav Dolezel1, (1)Institute of Experimental Botany, Olomouc, Czech Republic, (2)BioNano Genomics, San Diego, CA, (3)Australian Centre for Plant Functional Genomics, Brisbane, Australia, (4)University of Queensland, Brisbane, Australia, (5)University of California, Davis, CA, (6)University of Queensland, St Lucia, Australia W015: Analysis of Complex Genomes The Challenges of Genomics in Polyploid Spartina Species: How to Deal with Hybrid Genomes and High Redundancy?

Armel Salmon, Julien Boutte, Julie Ferreira de Carvalho, Mathieu Rousseau-Gueutin and Malika Lily Ainouche, University of Rennes 1 - UMR CNRS 6553, Rennes, France W016: Analysis of Complex Genomes The Molecular Mechanisms of Plant Polyploidization Revealed By Systems Analysis of the Genomes and Transcriptomes of Wheat, Cotton and Related Species

Yang Zhang1, Yun-Hua Liu1, Meiping Zhang1, Qijun Zhang2, Steven S Xu3, Wayne Smith1, Steve Hague1, James Frelichowski4 and Hong-Bin Zhang1, (1)Texas A&M University, College Station, TX, (2)North Dakota State University, Fargo, ND, (3)USDA-ARS, Fargo, ND, (4)USDA-ARS, College Station, TX

W017: Analysis of Complex Genomes Fungal Artificial Chromosome (FAC): A Novel Technology to Translate the Whole Genome Sequence Information into the Secondary Metabolome in Filamentous Fungi

Cheng-Cang Charles Wu, Intact Genomics, Inc, St Louis, MO W018: Analysis of Complex Genomes Assessing and Validating the Amphidiploid Genome of Brassica napus using Genotyping by Sequencing

Philipp Emanuel Bayer, University of Queensland, Brisbane, Australia W019: Analysis of Complex Genomes A Whole Genome Sorting-Whole Genome Shotgun (WGS2) Approach for Sequencing the Allotetraploid Durum Wheat Genome

Alessia Fiore1, Debora Giorgi1, Patrizia Pallara1, Marco Pietrella1, Anna Farina1, Elio Schijlen2, Sergio Lucretti1, Giovanni Giuliano1, Gabino F Sanchez Perez2 and Stephane Rombauts3, (1)ENEA - Italian Agency for New Technologies, Rome, Italy, (2)Plant Research International, Wageningen University, Wageningen, Netherlands, (3)VIB Department of Plant Systems Biology, Ghent University, Ghent, Belgium W020: Animal Epigenetics Integrating DNA Methylation with other 'Omics Data Sets for Prediction of Meat Tenderness in Sheep

Christine Couldrey1, Daisy Shepherd1, Paul Maclean1, Shannon Clarke2, John McEwan2, Rudiger Brauning2 and Vanessa Cave1, (1)AgResearch Ltd Ruakura, Hamilton, New Zealand, (2)AgResearch Ltd Invermay Agricultural Centre, Dunedin, New Zealand

W021: Animal Epigenetics Non-Invasive Biomarkers of Embryo Development in Cattle

Jenna Kropp, University of Wisconsin, Madison, WI W022: Animal Epigenetics Paternal Epigenetic Mechanisms Regulate Male Fertility and Early Development in Mammals

Erdogan Memili, Mississippi State University, Mississippi State, MS W023: Animal Epigenetics Genetic Architecture and Evolution of Complex Traits

Mike E Goddard, Biosciences Research Division, DPI, Melbourne, Australia W024: Animal Epigenetics Dynamic Chromatin Modifications and Tissue-Specific Marks of Mdv Infection in Inbred Chicken Lines

Jiuzhou Song, University of Maryland, College Park, MD

W025: Animal Genomics and Adaptation to Climate Change Alterations in Body Composition and Transcriptional Profile as a Result of Prenatal Heat Stress Exposure in Pigs

Rebecca L Boddicker1, James E Koltes2, Eric Fritz-Waters2, Jacob T Seibert1, James M Reecy2, Dan Nettleton1, Matthew C Lucy3, Timothy J Safranski3, Joshua T Selsby1, Robert P Rhoads4, Nicholas K Gabler1, Lance H Baumgard1 and Jason W Ross1, (1)Iowa State University, Ames, IA, (2)Department of Animal Science, Iowa State University, Ames, IA, (3)Division of Animal Sciences, University of Missouri, Columbia, MO, (4)Virginia Tech University, Blacksburg, VA W026: Animal Genomics and Adaptation to Climate Change Genome-Wide SNP Scans Reveal Multiple Signatures of Selection in Egyptian Barki Sheep and Goats Raised in Hot Arid Environments

Joram Mwacharo1, Ahmed R Elbeltagy2, Eui-Soo Kim3, Barbara Rischkowsky4, Adel M Aboul-Naga2, Brian Sayre5 and Max F Rothschild3, (1)Small Ruminant Genetics and Genomics Group, The International Center for Agricultural Research in Dry Areas (ICARDA), Addis Ababa, Ethiopia, (2)Animal Production Research Institute, Cairo, Egypt, (3)Iowa State University, Ames, IA, (4)Intern Center for Agric Res in the Dry Areas, ICARDA, Addis Ababa, Ethiopia, (5)Virginia State University, Petersburg, VA W027: Animal Genomics and Adaptation to Climate Change Sensitivity to Temperature Variation in Beef Cattle: Opportunities and Challenges for Selection

Matt L Spangler, University of Nebraska-Lincoln, Lincoln, NE

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W028: Animal Genomics and Adaptation to Climate Change Genomics of Heat Stress in Poultry

Susan J Lamont1, Angelica Bjorkquist1, Derrick J Coble1, Max F Rothschild1, Michael E Persia2, Chris Ashwell3 and Carl J Schmidt4, (1)Iowa State University, Ames, IA, (2)Virginia Tech, Blacksburg, VA, (3)North Carolina State University, Raleigh, NC, (4)University of Delaware, Newark, DE W029: Applied Triticeae Genomics Progress in Wheat Structural Genomics

Jarrod Chapman, DOE Joint Genome Institute, Walnut Creek, CA W030: Applied Triticeae Genomics Comparative Analysis of Gene Expression Regulation Among Diploid and Polyploid Wheat Genomes

Matthias Pfeifer1, Fu-Hao Lu2, Michael Bevan2 and Klaus FX Mayer1, (1)Plant Genome and Systems Biology, Helmholtz Center Munich, Neuherberg, Germany, (2)John Innes Centre, Norwich, United Kingdom W031: Applied Triticeae Genomics Epigenomic Maps of Bread Wheat Chromosome 3B

Aurelie Evrard, Frederic Choulet and Etienne Paux, INRA GDEC, Clermont-Ferrand, France

W032: Applied Triticeae Genomics Sequence-Based Map Development of Wheat NAM Populations

Katherine Jordan1, Shichen Wang1, Yanni Lun1, Shiaoman Chao2, Jorge Dubcovsky3, Jamie Sherman4, Alina Akhunova1, Luther Talbert4 and Eduard Akhunov1, (1)Kansas State University, Manhattan, KS, (2)USDA-ARS, Fargo, ND, (3)University of California Davis, Davis, CA, (4)Montana State University, Bozeman, MT W033: Applied Triticeae Genomics Tilling for Disease Resistance Genes

Ksenia Krasileva1, Joshua M Hegarty1, Francine Paraiso1, Xiaodong Wang1, Hans Vasquez-Gross2, Paul C Bailey3, Sarah Ayling3, Cristobal Uauy4 and Jorge Dubcovsky1, (1)University of California Davis, Davis, CA, (2)Department of Plant Sciences, University of California, Davis, Davis, CA, (3)The Genome Analysis Centre, Norwich, United Kingdom, (4)John Innes Centre, Norwich, England W034: Applied Triticeae Genomics Battling Stem Rust with Cloned Resistance Genes: NB-LRRs in the Haystack

Brande Wulff, John Innes Centre, Norwich, United Kingdom W035: Applied Triticeae Genomics An Integrated Genomic Approach Towards Cloning the Stem Solidness Gene Sst1 in Wheat

Kirby Nilsen and Curtis J Pozniak, University of Saskatchewan, Saskatoon, SK, Canada

W036: Aquaculture A Genome Sequence Assembly for Channel Catfish, Ictalurus punctatus

Geoff Waldbieser, USDA - Agricultural Research Service, Stoneville, MS W037: Aquaculture Yeast Two-Hybridization Analyses of Atlantic Salmon sdY Interactions

Agnieszka Stadnik, Simon Fraser University, Burnaby, BC, Canada W038: Aquaculture De Novo Genome Assembly of the South American Freshwater Fish Tambaqui (Colossoma macropomum)

Alexandre R Caetano, Embrapa Recursos Genéticos e Biotecnologia, Brasilia, DF, Brazil W039: Aquaculture Allele-Specific Expression in Interspecific Catfish Hybrids

Ailu Chen, The Fish Molecular Genetics and Biotechnology Laboratory, Auburn, AL W040: Aquaculture Tissue and Disease Specific Expression of miRNA Genes in Atlantic Salmon (Salmo salar)

Rune Andreassen, Oslo and Akershus University College of Applied Sciences, Oslo, Norway

W041: Aquaculture Can Epigenetic Regulation of Sex Ratios Explain Natural Variation in Self-Fertilization Rates?

Carlos M Rodriguez Lopez1, Amy Ellison2, Paloma Moran3, Martin Swain4, Manuel Megias3, Matthew Hegarty5, James M Breen1, Michael J Wilkinson1 and Sofia Consuegra6, (1)University of Adelaide, Adelaide, Australia, (2)Cornell University, Ithaca, NY, (3)Universidad de Vigo, Vigo, Spain, (4)Aberystwyth University, Aberystwyth, United Kingdom, (5)IBERS, Aberystwyth University, Aberystwyth, United Kingdom, (6)Swansea University, Swansea, United Kingdom W042: Aquaculture The Application of Genomic Selection in Aquaculture

Theodorus M Meuwissen, Norwegian University of Life Sciences, Oslo, Norway W043: Aquaculture New Insights in the Differences Between Triploid and Diploid Fujian Oyster By Integrated Gene Expression Profiling and Proteomic Analyses

Weiwei You, Xiamen University, Xiamen, China W044: Aquaculture Detection of Genes and microRNA Involved in Sex Determination in Nile Tilapia (Oreochromis niloticus)

Orly Eshel, Volcani Research Center, Bet-Dagan, Israel

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W045: Aquaculture Contrasting Patterns of Neutral and Adaptive Genetic Variation of Chilean Blue Mussel (Mytilus chilensis) Due to Local Adaptation and Aquaculture

Cristian Araneda, Universidad de Chile, Depto de Produccion Animal, Santiago, Chile W046: Aquaculture Application of Genomics to Selective Breeding of Atlantic Salmon

Ross D Houston, The Roslin Institute and R(D)SVS, University of Edinburgh, Edinburgh, United Kingdom W047: Aquaculture RNA-Seq Identifies SNPs Associated with Muscle Yield and Quality in Rainbow Trout

Bam D Paneru, Middle Tennessee State University, Murfreesboro, TN W048: Aquaculture GWAS Analyses in Catfish Reveal the Presence of Functional Hubs of Related Genes within Major QTLs for Columnaris Disease Resistance

Xin Geng, Auburn University, Auburn, AL

W049: Aquaculture Accuracy of Genomic Prediction for BCWD Resistance in Rainbow trout Using 24K RAD-SNP and 49K SNP and Bayes B/C and Single-Step GBLUP Methods

Roger L Vallejo, USDA-ARS-NCCCWA, Kearneysville, WV W050: Aquaculture Selective Breeding in Commercial North American Rainbow Trout Populations

Jim Parsons, Troutlodge, Inc, Sumner, WA W051: Aquaculture Stepping Toward Sustainable Aquaculture: Genomic Resource Development to Help Guide Broodstock Selection and Culture Practices for the California Yellowtail, Seriola lalandi

Catherine Purcell, Southwest Fisheries Science Center, National Marine Fisheries Service, La Jolla, CA W052: Aquaculture Identification of Mitochondrial microRNAs Related to Egg Deterioration Caused By Post-Ovulatory Aging in Rainbow Trout

Hao Ma, West Virginia University, Morgantown, WV

W053: Aquaculture The Development and Characterization of a 57K SNP Chip for Rainbow Trout

Yniv Palti, USDA-ARS-NCCCWA, Kearneysville, WV W054: Aquaculture NRSP-8 Bioinformatics Coordinator

James M Reecy, Department of Animal Science, Iowa State University, Ames, IA W055: Aquaculture Business Meeting

John Liu, Auburn University, Auburn, AL and Caird E Rexroad, III, USDA-ARS-NCCCWA, Kearneysville, WV W056: Arabidopsis Information Portal & Intl Arabidopsis Informatics Consortium TAIR as a Model for Database Sustainability

Eva Huala1, Donghui Li1, Tanya Z Berardini1,2 and Robert Muller1, (1)Phoenix Bioinformatics, Redwood City, CA, (2)Phoenix Bioinformatics, Stanford, CA W057: Arabidopsis Information Portal & Intl Arabidopsis Informatics Consortium What's New at NASC?

Sean Tobias May, University of Nottingham, Loughborough, United Kingdom

W058: Arabidopsis Information Portal & Intl Arabidopsis Informatics Consortium Cross-Species Network Analysis Using VirtualPlant

Manpreet S Katari1, Kranthi K Varala1, Stuti Srivastava1, Sam Goldman1, Akshay Jain1, Rodrigo A Gutiérrez2, Dennis Shasha1 and Gloria Coruzzi1, (1)New York University, New York, NY, (2)Pontificia Universidad Católica de Chile, Santiago, Chile W059: Arabidopsis Information Portal & Intl Arabidopsis Informatics Consortium A Walk through the Araport Web Site

Chia-Yi Cheng, J Craig Venter Institute, Rockville, MD W060: Arabidopsis Information Portal & Intl Arabidopsis Informatics Consortium App Development within the MapMap Project

Marie Bolger, RWTH Aachen University, Aachen, Germany W061: Arabidopsis Information Portal & Intl Arabidopsis Informatics Consortium Exposing Web Services for the Arabidopsis Information Portal

Jason R Miller, J Craig Venter Institute, Rockville, MD

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W062: Arabidopsis Information Portal & Intl Arabidopsis Informatics Consortium Developing Applications for the Arabidopsis Information Portal

Matt Vaughn, Texas Advanced Computing Center, Austin, TX W063: Arthropod Genomics Bacterial Pathogen Genomics: Liberibacters from Around the World

Kent F McCue, USDA Agricultural Research Service, Albany, CA, Gerard R Lazo, USDA Agricultural Research Service, WRRC, Albany, CA and Joseph E Munyaneza, USDA Agricultural Research Service, Wapato, WA W064: Arthropod Genomics Psyllid RNAi

Wayne Hunter, USDA Agricultural Research Service, Fort Pierce, FL and Blake Bextine, University of Texas-Tyler, Tyler, TX W065: Arthropod Genomics Regulation of Viral Infections for Insect Pest Managment

Blake Bextine, University of Texas-Tyler, Tyler, TX, Wayne Hunter, USDA Agricultural Research Service, Fort Pierce, FL and Patrick Rydzak, University of Texas at Tyler, Tyler, TX W066: Arthropod Genomics The Phytobiome Initiative

Jan E Leach, Colorado State University, Fort Collins, CO

W067: Arthropod Genomics The i5k Perspective

Susan Brown, Kansas State University, KSU Bioinformatics Center, Manhattan, KS W068: Arthropod Genomics Progress on the I5K Pilot at the Baylor College of Medicine Human Genome Sequencing Center

Kim C Worley, Stephen Richards, Daniel S T Hughes, Shwetha C Murali, Shannon Dugan, Donna M Muzny and Richard A Gibbs, Baylor College of Medicine, Houston, TX W069: Banana Genomics Banana Genome Contributes to Understand Grass Chromosome Number Reduction and Genome Repatterning Mechanism

Xiyin Wang, Plant Genome Mapping Laboratory, University of Georgia, Athens, GA W070: Banana Genomics Towards a Better Genome Annotation of Different Musa Cultivars Using mRNA Seq and Proteomics Data: The Search for Allelic Variants Related to Drought

Sebastien C Carpentier1, Jassmine Zorilla1, Ewaut Kissel1, Mathieu Rouard2, Alberto Cenci3, Nicolas Roux2 and Rony Swennen1, (1)KULeuven, Leuven, Belgium, (2)Bioversity International, Montpellier, France, (3)Bioversity International, Commodity Systems & Genetic, F-34397 Montpellier, France

W071: Banana Genomics Transposable Elements and Their Evolution in Musa

Pat Heslop-Harrison1, Gerhard Menzel2, Tony Heitkam2, Faisal Nouroz3, Trude Schwarzacher3 and Thomas Schmidt4, (1)University of Leicester, Leicester, Leic, United Kingdom, (2)Institute of Botany, Technische Universität Dresden, Dresden, Germany, (3)University of Leicester, Leicester, United Kingdom, (4)Dresden University of Technology, Dresden, Germany W072: Banana Genomics The African Orphan Crops Consortium, an Uncommon Collaboration to Develop Plantain and Banana

Allen Van Deynze, Seed Biotechnology Center, University of California, Davis, CA W073: Banana Genomics Field Trial of Xanthomonas Wilt Disease-Resistant GM Bananas in East Africa

Andrew Kiggundu1, Leena Tripahti2, Jaindra Tripathi2, Wilberforce Tushemereirwe3, Sam Korie4 and Frank Shotkoski5, (1)National Agricultural Research Laboratories (NARL), Kampala, Uganda, (2)International Institute of Tropical Agriculture, Kampala, Uganda, (3)National Agriculture Research Laboratories, Kampala, Uganda, (4)International Institute of Tropical Agriculture, Ibadan, Nigeria, (5)Cornell University, Ithaca, NY W074: Banana Genomics Updates on the Musa acuminata Reference Genome Sequence

Angélique D'hont, CIRAD, UMR AGAP, Montpellier, France and Mathieu Rouard, Bioversity International, Montpellier, France

W075: Bioenergy Grass Genomics Update on Assembly and Functionality of the Miscanthus Genome Sequence

Stephen P Moose, University of Illinois Urbana-Champaign, Urbana, IL W076: Bioenergy Grass Genomics Constructing a Comprehensive Picture of the Miscanthus Cell Wall to Advance Its Deconstruction

Ricardo da Costa1, Sivakumar Pattathil2, Utku Avci2, Scott J Lee3, Gordon G Allison1, Samuel P Hazen3, Ana Winters1, Michael G Hahn2 and Maurice Bosch1, (1)Aberystwyth University, Aberystwyth, United Kingdom, (2)CCRC - University of Georgia, Athens, GA, (3)Biology Department, University of Massachusetts, Amherst, MA W077: Bioenergy Grass Genomics The carbohydrate metabolic profile can be used as a biomarker of productivity in Miscanthus

Sarah Purdy, Aberystwyth University, Aberystwyth, United Kingdom

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W078: Bioenergy Grass Genomics Genomics and Genetics of Switchgrass Cell Wall Quality

Laura Bartley1, Kangmei Zhao1, Chengcheng Zhang2, Sandra Thibivilliers1, Aruna Nandety2, Ananta Achayra3, Desalegn Serba4, Xuesong Li5, E Charles Brummer6, Nicholas Santoro7, Malay C Saha8 and Lan Zhu5, (1)University of Oklahoma, Norman, OK, (2)Univestiy of Oklahoma, Norman, OK, (3)University of Georgia, Athens, GA, (4)Noble Foundation, Ardmore, OK, (5)Oklahoma State University, Stillwater, OK, (6)University of California, Davis, Davis, CA, (7)DOE GLBRC,Michigan State University, East Lansing, MI, (8)The Samuel Roberts Noble Foundation, Ardmore, OK W079: Bioenergy Grass Genomics Functional Genomics of Sugar Content in Sweet Sorghum Stems

David M Braun, University of Missouri, Columbia, MO W080: Bioenergy Grass Genomics Comparative Genomics of Bioenergy Grasses

Daniel S Rokhsar, DOE Joint Genome Institute, Walnut Creek, CA W081: Bioenergy - Towards Increasing Oil in Nonseed Biomass Construction of an Indexed Mutant Library to Enable Reverse Genetics Studies of Biological Processes in Chlamydomonas reinhardtii

Xiaobo Li, Carnegie Institution for Science, Stanford, CA

W082: Bioenergy - Towards Increasing Oil in Nonseed Biomass Comparative Transcriptomics Identifies Key Steps in Storage Oil Biosynthesis in Plant Tissues

Aruna Kilaru, East Tennessee State University, Johnson City, TN and John Ohlrogge, Michigan State University, East Lansing, MI W083: Bioenergy - Towards Increasing Oil in Nonseed Biomass Ectopic Expression of WRI1 Affects Fatty Acid Homeostasis in Brachypodium distachyon Vegetative Tissues

Yang Yang1, Jack Munz2, Cynthia L Cass2, John C Sedbrook2 and Christoph Benning1, (1)Michigan State University, GLBRC, East Lansing, MI, (2)Illinois State University and GLBRC, Normal, IL W084: Bioenergy - Towards Increasing Oil in Nonseed Biomass Towards the Development of Sustainable Feedstocks for Renewable Biobased Products: The Case for Sugarcane and Sweet Sorghum

Thomas E Clemente1, Fredy Altpeter2, Stephen Long3, John Shanklin4, Aleel Grennan3, Don Ort3 and Stephen P Moose5, (1)University of Nebraska, Lincoln, NE, (2)University of Florida - IFAS, Gainesville, FL, (3)University of Illinois, Urbana-Champaign, Urbana, IL, (4)Brookhaven National Lab, Upton, NY, (5)University of Illinois Urbana-Champaign, Urbana, IL W085: Bioenergy - Towards Increasing Oil in Nonseed Biomass Vegetative Production of Oil Targeted for High Biomass Crops

Jos van Boxtel1, Changquan Wang2, Gia Fazio1, Quyen Lam1, Cade Guthrie2, Derrick Hicks2, Cassie Hilder1, Vic Knauf1 and Katayoon Dehesh2, (1)Arcadia Biosciences, Davis, CA, (2)UC Davis, Davis, CA

W086: Bioenergy - Towards Increasing Oil in Nonseed Biomass Metabolic Engineering for Increasing Oil in Vegetative Plant Tissues

Olga Yurchenko1, Jay Shockey2, Sunjung Park1, Satinder Gidda3, Kent Chapman4, Robert Mullen3 and John Dyer1, (1)US Arid-Land Agricultural Research Center, Maricopa, AZ, (2)USDA-ARS, Southern Regional Research Center, New Orleans, LA, (3)Department of Molecular and Cellular Biology, University of Guelph, Guelph, ON, Canada, (4)Department of Biological Sciences, University of North Texas, Denton, TX W087: Bioenergy - Towards Increasing Oil in Nonseed Biomass Maximizing TAG Accumulation in Plant Leaves by Combinatorial Metabolic Engineering

Thomas Vanhercke1, James Petrie2, Allan Green3 and Surinder Singh2, (1)CSIRO Agriculture Flagship, Canberra, Australia, (2)CSIRO Agriculture Flagship, canberra, Australia, (3)CSIRO Food and Nutrition Flagship, Canberra, Australia W088: Bioinformatics Perfect Long Read Assembly and the Rise of Pan-Genomics

Michael Schatz1, James Gurtowski1, Sara Goodwin1, Scott Ethe-Sayers1, Panchajanya Deshpande1, Senem Eskipehlivan1, Melissa Kramer1, Hayan Lee2, Eric Antoniou1 and W Richard McCombie1, (1)Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, (2)Stony Brook University, Stony Brook, NY

W089: Bioinformatics Efficient Assembly of Large Genomes Using Single-Molecule Sequencing and Locality Sensitive Hashing

Konstantin Berlin1, Sergey Koren2, Jason Chin3, James Drake3, Jane Landolin3 and Adam M Phillippy2, (1)University of Maryland, College Park, MD, (2)National Biodefense Analysis and Countermeasures Center, Frederick, MD, (3)Pacific Biosciences, Menlo Park, CA W090: Bioinformatics Rapid De Novo Assembly and Visualization of Plant and Animal Genomes Using Single-Library, PCR-Free, 250-Base Illumina Reads

Iain MacCallum, Neil Weisenfeld, Ted Sharpe, Bayo Lau, Carsten Russ, Jessica Alfoldi, Jeremy Johnson, Jason Turner-Maier, Broad Genomics Platform, Chad Nusbaum, Kerstin Lindblad-Toh and David B Jaffe, Broad Institute, Cambridge, MA W091: Bioinformatics What Gene Prediction in Transcriptomes, Metatranscrptomes, Metagenomes, and Microbial Genomes has in Common

Mark Borodovsky, Georgia Institute of Technology, Atlanta, GA W092: Bioinformatics The Stategra Initiative Develops Novel Methodologies for the Integrative Analysis of Multiple Types of NGS & Omics Data

Ana Conesa, Centro de Investigación Príncipe Felipe, Valencia, Spain

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W093: Bioinformatics Nonparametric Methods for Prediction and Analysis of Promoters in Model Organisms

Alyona Kryschenko, University of Southern California, Los Angeles, CA, Tatiana Tatarinova, university of southern california, Los Angeles, CA and Martin Triska, Children's Hospital Los Angeles, Los Angeles, CA W094: Brachypodium Genomics PMT, a Grass-Specific Acyltransferase Involved in Lignin Biosynthesis

Deborah Petrik1, Steven D Karlen2, Cynthia L Cass3, Dharshana Padmakshan4, Fachuang Lu4, Sarah Liu4, Philippe Le Bris5, Sebastien Antelme6, Nicholas Santoro7, Curtis Wilkerson8, Richard Sibout6, Catherine Lapierre6, John Ralph9 and John C Sedbrook3, (1)Illinois State University and DOE Great Lakes Bioenergy Research Center, Normal, IL, (2)GLBRC and University of Wisconsin, Madison, WI, (3)Illinois State University and GLBRC, Normal, IL, (4)University of Wisconsin, Madison, WI, (5)INRA, Versaille, France, (6)INRA-IJPB, Versailles, France, (7)DOE GLBRC,Michigan State University, East Lansing, MI, (8)Michigan State University, East Lansing, MI, (9)GLBRC, University of Wisconsin, Wisconsin Energy Institute, Madison, WI W095: Brachypodium Genomics Arabidopsis Lost Its Sister: Why Brachypodium Is a Better Model to Study PIN-Mediated Auxin Transport in the Shoot

Devin O'Connor, Sainsbury Laboratory, Cambridge University, Cambridge, United Kingdom and Ottoline Leyser, Sainsbury Laboratory Cambridge University, Cambridge, United Kingdom

W096: Brachypodium Genomics High-Throughput Phenotyping of Brachypodium distachyon under Progressive Drought and Heat Stress

Malia Gehan, Noah Fahlgren, Tracy Hummel, Stephanie Turnipseed and Todd Mockler, Donald Danforth Plant Science Center, St Louis, MO W097: Brachypodium Genomics Examining Flowering Time in the Grasses: Population Structure and Genome-Wide Association Mapping in Brachypodium distachyon

Ludmila Tyler1, Scott J Lee2, Nelson D Young2, Gregory A DeIulio1, Elena Benavente3, Michael Reagon4, Jessica Sysopha2, Riccardo M Baldini5, Angelo Troìa6, Samuel P Hazen2 and Ana Caicedo2, (1)Biochemistry and Molecular Biology Department, Amherst, MA, (2)Biology Department, University of Massachusetts, Amherst, MA, (3)Department of Biotechnology, ETSIA, Technical University of Madrid, Madrid, Spain, (4)Department of Biology, The Ohio State University Lima, Lima, OH, (5)Department of Biology, University of Florence, Florence, Italy, (6)Dipartimento STEBICEF, Sezione di Botanica ed Ecologia vegetale, Università di Palermo, Palmero, Italy W098: Brachypodium Genomics Efficient Evolution of Growth-Promoting Bacterial Rhizosphere Communities through Plant-Microbiome Co-Propagation

Ulrich Mueller, University of Texas at Austin, Austin, TX

W099: Brachypodium Genomics The Brachypodium-Puccinia graminis System: Solving a Puzzle to Uncover the Underlying Mechanisms of Non-Host Resistance and Plant Immunity

Melania Figueroa1, Sean Gordon2, Claudia Castell-Miller1, Feng Li1, Sergei Filichkin3, Matthew J Moscou4, John Vogel2, Todd C Mockler5, David F Garvin6 and William F Pfender7, (1)University of Minnesota, St Paul, MN, (2)DOE Joint Genome Institute, Walnut Creek, CA, (3)Oregon State University, Corvallis, OR, (4)The Sainsbury Laboratory, Norwich, United Kingdom, (5)Donald Danforth Plant Science Center, Saint Louis, MO, (6)USDA-ARS, Plant Science Research Unit, St Paul, MN, (7)USDA-ARS, Forage Seed and Cereal Research Unit, Corvallis, OR W100: Brassicas Assignment of Draft Sequences of the Radish (Raphanus sativus L) Genome to a High-Density Linkage Map

Hiroyasu Kitashiba1, Feng Li1, Hideki Hirakawa2, Takahiro Kawanabe1, Kenta Shirasawa2, Satoshi Tabata2 and Takeshi Nishio1, (1)Graduate School of Agricultural Science, Tohoku University, Sendai, Japan, (2)Kazusa DNA Research Institute, Kisarazu, Japan W101: Brassicas Analysis of Circadian Transcriptional Networks in Brassica Rapa Elucidates Temporally Regulated Abiotic Stress Modules

Kathleen Greenham1, Carmela Rosaria Guadagno2, Malia Gehan3, Patrick Edger4, Ping Lou1, Colleen J Doherty5, Todd C Mockler6, Brent E Ewers2, Cynthia Weinig2 and C Robertson McClung1, (1)Dartmouth College, Hanover, NH, (2)University of Wyoming, Laramie, WY, (3)Donald Danforth Plant Science Center, St Louis, MO, (4)University of California, Berkeley, CA, (5)North Carolina State University, Raleigh, NC, (6)Donald Danforth Plant Science Center, Saint Louis, MO

W102: Brassicas Genomic-Assisted Marker Development of Brassica Crop for Agronomic Improvement

Yong Pyo Lim, SuRyun Choi, Xiaonan Li, Vignesh Dhandapani and Wenxing Pang, Chungnam National University, Daejeon, South Korea W103: Brassicas Development and Application of Genomic Resources in Brassica rapa

Upendra Kumar Devisetty1, Michael F Covington1, Cody Markelz1, Saradadevi Lekkala1, Marcus T Brock2, Cynthia Weinig2 and Julin N Maloof1, (1)University of California, Davis, CA, (2)University of Wyoming, Laramie, WY W104: Brassicas Homeologous Exchange Crosstalks Between Coresident Subgenomes of the Post-Neolithic Brassica napus Allopolyploid

Boulos Chalhoub, URGV-INRA, Evry, France W105: Brassicas Genome-Wide Association Study of the Complex Traits in Amphidiploid Rapeseed (Brassica napus L)

Xiaoming Wu, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan, China and Feng Li, Oil Crop Research Institute, Chinese Academy of Agricultural Sciences, Wuhan, China

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W106: Buffalo genome Status of the Buffalo Genome Project

John Williams1, Alessio Valentini2, Paolo Ajmone Marsan3, Raffaele Mazza4, Aleksey Zimin5, Kim D Pruitt6, Tad S Sonstegard7, Curtis P VanTassell7, Daniela Iamartino8, Francesco Strozzi8, James M Reecy9, Fabrizio Ferre10, Cynthia Lawley11, Elisabete Amaral12, James Womack13 and International Buffalo Consortium8, (1)Fondazione Parco Tecnologico Padano, Lodi, Italy, (2)University of Tuscia, Viterbo, Italy, (3)Inst of Zootechnics, Università Cattolica del S Cuore, Piacenza, Italy, (4)Laboratorio Genetica e Servizi (LGS), Associazione Italiana Allevatori (AIA, Cremona, Italy, (5)University of Maryland, College Park, MD, (6)National Center for Biotechnology Information (NCBI/NLM/NIH), Bethesda, MD, (7)Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD, (8)Parco Tecnologico Padano, Lodi, Italy, (9)Department of Animal Science, Iowa State University, Ames, IA, (10)CASPUR/CINECA, Rome, Italy, (11)Illumina, San Francisco, CA, (12)UNESP Sao Paulo State University, Sao Jose Rio Preto, Brazil, (13)Texas A&M University, College Station, TX W107: Buffalo genome Comparison of CNVs in Buffalo with Other Species

Derek Bickhart, Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD and George Liu, Animal Genomics and Improvement Laboratory, ARS-USDA, Beltsville, MD

W108: Buffalo genome Using the 90K Buffalo SNP Array

Ezequiel Luis Nicolazzi1, Curtis P VanTassell2, Daniela Iamartino1, James M Reecy3, Eric Fritz-Waters3, Tad S Sonstegard2, James E Koltes3, Steven G Schroeder2, Ali Ahmad4, Jose Fernando Garcia5, Luigi Ramunno6, Gianfranco Cosenza6, John Williams1 and International Buffalo Consortium1, (1)Fondazione Parco Tecnologico Padano, Lodi, Italy, (2)Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD, (3)Department of Animal Science, Iowa State University, Ames, IA, (4)University of Veterinary and Animal Sciences,, Lahore, Pakistan, (5)Sao Paulo State University / UNESP, Sao Paulo, Brazil, (6)Department of Agriculture, University of Naples “Federico II”, Napoli, Italy

W109: Buffalo genome Diversity and Origins of Domestic Buffalo

Paolo Ajmone Marsan1, Marco Milanesi1, Elia Vajana1, Daniela Iamartino2, Lorenzo Bomba1, Ezequiel Luis Nicolazzi2, Sahar Saad El-din Ahmed3, Jesus Rommel V Herrera4, Libertado Cruz5, Shujun Zhang6, Liguo Yang6, Xingjie Hao6, Fuyuan Zuo7, Song-Jia Lai8, Shuilian Wang9, Ruyu Liu10, Yundeng Gong11, Mahdi Mokhber12, Yongjiang Mao13, Feng Guan14, Augustin Vlaic15, Luigi Ramunno16, Gianfranco Cosenza16, Ali Ahmad17, Ihsan Soysal18, Emel Özkan Ünal18, Mariena Ketudat-Cairns19, Jose Fernando Garcia20, Yuri Tani Utsunomiya21, Rangsun Parnpai19, Marcela Gonçalves Drummond22, Peter Galbusera23, James Burton24, Eileen Hoal25, Yulnawati Yusnizar26, Cece Sumantri27, Bianca Moioli28, Alessio Valentini29, Licia Colli1, Alessandra Stella2, John Williams2 and International Buffalo Consortium2, (1)Inst of Zootechnics, Università Cattolica del S Cuore, Piacenza, Italy, (2)Fondazione Parco Tecnologico Padano, Lodi, Italy, (3)National Research Center, Dokki, Giza, Egypt, (4)Philippine Carabao Center, College, Laguna, Philippines, (5)PCC-Philippines Carabao Center, Nueva Ecija, Philippines, (6)Huazhong Agricultural University, Wuhan, China, (7)Southwest University, Chang yuan town, China, (8)Institute of Animal Genetics and Breeding, Sichuan Agricultural University, Chengdu, China, (9)Hunan Agricultural University, Changsha, Hunan Province, China, (10)Guizhou Agricultural University, Guiyang, Guizhou Province, China, (11)Enshi Technology college, Enshi, Hubei province, China, (12)University of Tehran, Karaj, Iran, (13)Yangzhou University, Yangzhou, Jiangshu province, China, (14)Hangzhou institute of Metrology of China, Huangzhou, Zhejiang province, China, (15)University of Agricultural Sciences and Veterinary Medicine, Cluj Napoca, Romania, (16)Department of Agriculture, University of Naples “Federico II”, Portici, Naples, Italy, (17)COMSATS Institute of Information Technology, Sahiwal, Pakistan, (18)Namik Kemal University, Tekirdag, Turkey, (19)Suranaree University of Technology, Nakhon Ratchasima, Thailand, (20)Faculdade de Medicina Veterinária de Araçatuba, UNESP - Univ Estadual Paulista, Araçatuba, Brazil, (21)Faculdade de Ciências Agrárias e Veterinárias, UNESP - Univ Estadual Paulista, Jaboticabal, Brazil, (22)Myleus Biotecnologia, Belo Horizonte, Brazil, (23)KMDA, Antwerpen, Belgium, (24)Earthwatch Institute, IUCN, Oxford, United Kingdom, (25)NRF/DST Centre of Excellence for Biomedical TB research, and MRC Centre for TB research, Stellenbosch University, Stellenbosch, South Africa, (26)Research Center for Biotechnology, Indonesian Institute of Sciences, Jalan Raya Bogor, Indonesia, (27)Bogor Agricultural University (IPB), Bogor, Indonesia, (28)Consiglio per la Ricerca e la sperimentazione in Agricoltura, Monterotondo, Italy, (29)University of Tuscia, Viterbo, Italy

W110: Buffalo genome Selection and Congenital Disease in Mediterranean Italian River Buffalo

Sara Albarella, Department of Veterinary Medicine and Animal Production, University Federico II - Naples - Italy, Naples, Italy, Francesca Ciotola, Department of Health Sciences, University Magna Graecia, Catanzaro (Italy), Catanzaro, Italy, Angelo Coletta, Italian Water Buffalo Breeders Association, Caserta, Italy, John Williams, Fondazione Parco Tecnologico Padano, Lodi, Italy and Vincenzo Peretti, Department of Veterinary Medicine and Animal Production, University Federico II, Naples, Italy W111: Buffalo genome Using Sequence Data to Localise Developmental Mutations

Jeremy F Taylor1, Sara Albarella2, Robert D Schnabel1, Gary S Johnson3, Francesco Strozzi4, Chiara Ferrandi4 and John Williams5, (1)Division of Animal Sciences, University of Missouri, Columbia, MO, (2)Department of Veterinary Medicine and Animal Production, University Federico II - Naples - Italy, Naples, Italy, (3)Department of Vet Pathobiology, University of Missouri, Columbia, MO, (4)Parco Tecnologico Padano, Lodi, Italy, (5)Fondazione Parco Tecnologico Padano, Lodi, Italy W112: Cacao Genomics Workshop Study on the Origin of Cacao Swollen Shoot Virus and Its Dispersal on Cacao Trees in West Africa

Emmanuelle Muller1, Francis Abrokwah2, Koffie Kouakou3, Essivi Mississo4, Marie-line Iskra-Caruana1 and Henry Dzahini-Obiatey2, (1)CIRAD-UMR BGPI, Montpellier cedex 5, France, (2)CRIG, Akim Tafo, Ghana, (3)CNRA, Divo, Cote d'Ivoire, (4)ITRA, CRA-F, Kpalimé, Togo

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W113: Cacao Genomics Workshop Cacao Swollen Shoot Virus: A Re-Emergent, Mealybug-Transmitted Virus Spreading in West Africa

Judith K Brown, University of Arizona, Tucson, AZ W114: Cacao Genomics Workshop The Biology, Genetic Diversity, and Genomics of Moniliophthora roreri, Causal Agent of Cacao Frosty Pod Rot

Bryan Bailey, Sustainable Perennial Crops Lab, USDA-ARS, Beltsville, MD, Shahin Ali, USDA-ARS, Beltsville, MD, Rachel Melnick, NIFA, Washington DC, DC, Mark Guiltinan, The Pennsylvania State University, University Park, PA, Jane Crozier, CABI, Surrey, United Kingdom, Wilberth Phillips, CATIE, Turrialba, Costa Rica, Gonçalo Amarante Guimarães Pereira, Genomics and Expression Laboratory - State University of Campinas - UNICAMP, Campinas, Brazil, Dapeng Zhang, Sustainable Perennial Crops Laboratory, USDA/ARS, Beltsville, MD and Lyndel Meinhardt, Sustainable Perennial Crops Lab, USDA/ARS, Beltsville, MD

W115: Cacao Genomics Workshop Biology and Genomics of Phytophthora spp: Fight Against a Potential Global Chocolate Famine

Shahin Ali1, Ishmael Amoako-Attah2, Jonathan Shao3, Rebecca Bailey4, Mary Strem5, Martha Schmidt5, Wilberth Phillips6, Surendra Surujdeo-Maharaj7, Jean-Philippe Marelli8, Martijn ten Hoopen9, Erica Goss10, Cristiano Villela Dias11, Danyu Shen12, Brett Tyler13, Lyndel Meinhardt14 and Bryan Bailey15, (1)USDA-ARS, Beltsville, MD, (2)Cocoa Research Institute of Ghana, Akim New-Tafo, Ghana, (3)ARS-USDA BARC, BELTSVILLE, MD, (4)SPCL BARC ARS/USDA, Beltsville, MD, (5)SPCL BARC ARS-USDA, BELTSVILLE, MD, (6)CATIE, Turrialba, Costa Rica, (7)The University of the West Indies, St Augustine, Trinidad and Tobago, (8)Mars Center for Cocoa Science-MARS Inc, Itajuipe, Brazil, (9)CIRAD, Montpellier, France, (10)University of Florida, Gainesville, FL, (11)MARS Inc, Bahia, Brazil, (12)Nanjing Agricultural University, Nanjing, China, (13)Oregon State University, Corvallis, OR, (14)Sustainable Perennial Crops Lab, USDA/ARS, Beltsville, MD, (15)Sustainable Perennial Crops Lab, USDA-ARS, Beltsville, MD W116: Cacao Genomics Workshop Interspecific Hybridization Between Theobroma cacao and Theobroma grandiflorum

Jean-Philippe Marelli1, Stefan E Royaert2, Valdevino Carmo3, Marcelo de Jesus Santos2, Dahyana S Britto4, Luciel dos Santos Fernandes5, Chigozie V Nwosu6, Juan Carlos Motamayor Arias7 and Raymond J Schnell8, (1)Mars Center for Cocoa Science-MARS Inc, Itajuipe, Brazil, (2)Mars Center for Cocoa Science - MARS Inc, Itajuípe (BA), Brazil, (3)Mars Center for Cacao Science-MARS Inc, Itajuipe, Brazil, (4)Mars Center for Cocoa Science, Itajuipe, Brazil, (5)Mars Center for Cocoa Science- MARS Inc, Itajuipe, Brazil, (6)Mars Chocolate North America, Hackettstown, NJ, (7)MARS Inc, Miami, FL, (8)MARS Inc, Miami, FL

W117: Cacao Genomics Workshop Functional Genomics of Defense Response in Theobroma Cacao

Andrew Fister1, Zi Shi2, Siela Maximova1 and Mark Guiltinan1, (1)The Pennsylvania State University, University Park, PA, (2)University of Georgia, Athens, GA W118: Cacao Genomics Workshop Identification of QTL Involved in the Production of Rooted Cuttings in a Segregating Mapping Population of Theobroma cacao L in Brazil

Stefan E Royaert1, Marcelo de Jesus Santos1, Jean-Philippe Marelli2, Raymond J Schnell3 and Juan Carlos Motamayor Arias3, (1)Mars Center for Cocoa Science - MARS Inc, Itajuípe (BA), Brazil, (2)Mars Center for Cocoa Science - MARS Inc, Itajuipe (BA), Brazil, (3)MARS Inc, Miami, FL W119: Cacao Genomics Workshop Association Mapping in Cacao Populations from Hawaii

Osman A Gutierrez1, Chifumi Nagai2, Rebecca Heinig2, Kathleen A Cariaga1, Donald Livingstone III3, Cecile L Tondo1, Juan Carlos Motamayor Arias4 and Raymond J Schnell3, (1)USDA ARS SHRS, Miami, FL, (2)Hawaii Agriculture Research Center, Kunia, HI, (3)MARS Inc, Miami, FL, (4)MARS Inc, Miami, FL

W120: Cacao Genomics Workshop Classical and 'omics' Approaches to Control Witches' Broom Disease of Cacao

Karina Peres Gramacho1, Jose Luis Pires1, Didier Clement2, Uilson Vanderlei Lopes1 and Fabienne Micheli3, (1)Cacao Research Center (CEPEC/CEPLAC), Itabuna, Brazil, (2)CIRAD, UMR AGAP, Montpellier, France, (3)Universidade Estadual de Santa Cruz (UESC), Ilheus, Brazil W121: Cassava Genomics Genome Sequence and Genetic Diversity of Cassava and Its Wild Relatives

Jessen V Bredeson, University of California, Berkeley, Berkeley, CA W122: Cassava Genomics Development of Herbicide-Tolerant Cassava Using Random Mutagenesis

Emily J McCallum1, Sandra Mansveld2, Ludvik K Wachowski2, Kim Schlegel1, Serena Rigotti1, Michiel TJ de Both2 and Wilhelm Gruissem1, (1)ETH Zürich, Zurich, Switzerland, (2)KeyGene, Wageningen, Netherlands W123: Cassava Genomics Identifying Genetic Load By Whole Genome and Transcriptome Sequencing of Cassava Breeding Lines

Ramu Punna, Fei Lu, Janu Verma and Edward S Buckler, Institute for Genomic Diversity, Cornell University, Ithaca, NY

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W124: Cassava Genomics Genome-Wide Association Analyses Reveal Key Aspects of Genetic Architecture Cassava in Africa

Marnin Wolfe, Cornell University, Ithaca, NY W125: Cassava Genomics TBD

Nigel J Taylor, Donald Danforth Plant Science Center, St Louis, MO W126: Cassava Genomics TBD

Morag Ferguson, International Institute of Tropical Agriculture (IITA), Nairobi, Kenya W127: Cat & Dog Workshop Comparative Analysis of the Cat Genome Reveals Clues to Feline Domestication

Michael J Montague1, Gang Li2, Barbara Gandolfi3, Carlos A Driscoll4, Richard K Wilson5, Leslie A Lyons3, William J Murphy6 and Wesley Warren7, (1)Washington University School of Medicine, St Louis, MO, (2)Texas A&M University College of Veterinary Medicine, College Station, TX, (3)University of Missouri-Columbia, Columbia, MO, (4)National Institutes of Health, Bethesda, MD, (5)The Genome Institute at Washington University, Saint Louis, MO, (6)Texas A&M University, College Station, TX, (7)The Genome Institute, St Louis, MO

W128: Cat & Dog Workshop Inherited Osteoarthropathy in Scottish Fold Cats Is Associated with Altered Calcium Channel Function

Barbara Gandolfi, University of Missouri-Columbia, Columbia, MO, Leslie A Lyons, University of Missouri - Columbia, Columbia, MO, columbia, MO, Badri Adhikari, University of Missouri - Columbia, Columbia, MO, Columbia, MO, Jianlin Cheng, university of Missouri - Columbia, Columbia, MO, columbia, MO, Richard Malik, University of Sydney, Sydney, Australia, Claire Wade, University of Sydney, Sydney NSW, Australia, Shireen Lamande, The Royal Children’s Hospital, Victoria, Australia and Bianca Haase, University of Sydney, Sydney, Australia W129: Cat & Dog Workshop Mapping Traits in Feline Hybrids

William J Murphy, Texas A&M University, College Station, TX W130: Cat & Dog Workshop Recent successes and growth of the 99 Lives Cat Genome Sequencing Initiative

Leslie A Lyons, University of Missouri-Columbia, Columbia, MO

W131: Cat & Dog Workshop Activities and Biological Implications of Mobile Elements in Canines

Julia Wildschutte1, Aurelien J Doucet2, Robert K Wayne3, Carles Vila4, Thomas Marques-Bonet5, Adam R Boyko6, John V Moran2,7 and Jeffrey M Kidd2, (1)University of Michigan, Ann Arbor, MI, (2)University of Michigan Medical School, Ann Arbor, MI, (3)University of California, Los Angeles, Los Angeles, CA, (4)Estación Biológica de Doñana, Sevilla, Spain, (5)ICREA at the Institut de Biologia Evolutiva (Univ Pompeu Fabra/CSIC), Barcelona, Spain, (6)Department of Biomedical Sciences Cornell University, Ithaca, NY, (7)Howard Hughes Medical Institute, Ann Arbor, MI W132: Cat & Dog Workshop Signatures of Positive Selection in the Dog Genome

Adam R Boyko, Department of Biomedical Sciences Cornell University, Ithaca, NY W133: Cat & Dog Workshop Utilization of Contemporary Canine Diversity to Investigate Breed-Specific Selection and Trait Fixation

Brian W Davis, NHGRI, Bethesda, MD W134: Cat & Dog Workshop Dissecting the Role Regulatory Variants Play in the Subphenotypes of Canine Complex Traits

Jennifer Meadows, Uppsala University, Uppsala, Sweden

W135: Cattle/Sheep/Goat 1 Analysis of the Sheep Genome, with a Focus on the Evolution and Function of the Rumen and Implications for Methane Production by Ruminants

Brian Dalrymple, CSIRO Agriculture Flagship, St Lucia, Australia, Ruidong Xiang, CSIRO Agriculture Flagship, St Lucia, Australia, Jiang Yu, CSIRO Animal, Food and Health Sciences, Brisbane, Australia, Jude Bond, DPI NSW, Armidale, Australia, V Hutton Oddy, DPI NSW, Armidal, Australia, Phil Vercoe, The University of Western Australia, Crawley, Australia, John McEwan, Invermay Agricultural Centre, AgResearch Ltd, Mosgiel, New Zealand, Pablo Fuentes-Utrilla, Edinburgh Genomics, Easter Bush, United Kingdom, Alan L Archibald, The Roslin Institute and R(D)SVS, University of Edinburgh, Midlothian, United Kingdom and Richard Talbot, Edinburgh Genomics, University of Edinburgh, Easter Bush, United Kingdom W136: Cattle/Sheep/Goat 1 Genome Wide Methylation Patterns in Holstein Leukocytes

Chad Dechow, The Pennsylvania State University, State College, PA and Wansheng Liu, Department of Animal Science, Penn State University, University Park, PA

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W137: Cattle/Sheep/Goat 1 Update on the International Goat Genome Consortium Projects

Gwenola Tosser-Klopp1, International Goat Genome Consortium (IGGC)2, Max F Rothschild3, Heather J Huson4, Ezequiel Luis Nicolazzi5, Tad S Sonstegard6, Marcel Amills7, Penny Riggs8, Curtis P VanTassell6, Paolo Ajmone Marsan9, Alessandra Stella10, Brian Sayre11, Wenguang Zhang12 and Rachel Rupp13, (1)INRA, Castanet-Tolosan, France, (2)INRA, CASTANET-TOLOSAN cedex, France, (3)Iowa State University, Ames, IA, (4)Cornell University, Ithaca, NY, (5)Fondazione Parco Tecnologico Padano, Lodi, Italy, (6)Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD, (7)Center for Research in Agricultural Genomics, BARCELONA, Spain, (8)Texas A&M University, College Station, TX, (9)Inst of Zootechnics, Università Cattolica del S Cuore, Piacenza, Italy, (10)FPTP, Lodi, Italy, (11)Virginia State University, Petersburg, VA, (12)Kumming Institute of Zoology, Kunming, China, (13)INRA, Toulouse, France W138: Cattle/Sheep/Goat 1 Muscle Hypertrophy and Polar Overdominance in Callipyge Sheep

Christopher A Bidwell, Purdue University, West Lafayette, IN

W139: Cattle/Sheep/Goat 1 Improving the Reference Genomes for the Sheep and the Cow

Kim C Worley1, Adam C English1, Xiang Qin1, Shwetha C Murali1, Daniel S T Hughes1, Stephen Richards1, Jeffrey Rogers1, Yi Han1, Vanessa Vee1, Min Wang1, Timothy PL Smith2, Tara G McDaneld2, Lee Alexander3, Brian Dalrymple4, James W Kijas5, Noelle Cockett6, David C Schwartz7, Shiguo Zhou7, Eric Boerwinkle1, Donna M Muzny1 and Richard A Gibbs1, (1)Baylor College of Medicine, Houston, TX, (2)USDA-ARS, US Meat Animal Research Center, Clay Center, NE, (3)USDA ARS, Miles City, MT, (4)CSIRO Agriculture Flagship, St Lucia, Australia, (5)CSIRO Animal, Health and Food Science, St Lucia, Australia, (6)Utah State University, Logan, UT, (7)University of Wisconsin-Madison, Madison, WI W140: Cattle/Sheep/Goat 1 New Perspectives from Two Large NIFA Funded Grants: An Overview of GWAS Results

Christopher M Seabury, Texas A&M University, College Station, TX, Feed Efficiency Consortium, http://wwwbeefefficiencyorg/, Columbia, MO and Bovine Respiratory Disease Consortium, http://wwwbrdcomplexorg, College Station, TX

W141: Cattle/Sheep/Goat 1 Whole-Genome Sequencing Reveals the Diversity and Population-Genetic Properties of Cattle CNVs

George E Liu1, Derek Bickhart2, Lingyang Xu3, Jana L Hutchison1, John B Cole1, Steven G Schroeder2, Jiuzhou Song3, Jose Fernando Garcia4, Curtis P VanTassell2, Tad S Sonstegard2, Robert D Schnabel5, Jeremy F Taylor5 and Harris Lewin6, (1)Animal Genomics and Improvement Laboratory, ARS-USDA, Beltsville, MD, (2)Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD, (3)University of Maryland, College Park, MD, (4)Sao Paulo State University / UNESP, Sao Paulo, Brazil, (5)Division of Animal Sciences, University of Missouri, Columbia, MO, (6)University of California, Davis, Davis, CA W142: Cattle/Sheep/Goat 2 A Livestock Database for Long Term Storage and Use of Genomic and Other Associated Information

Harvey Blackburn1, Ted Manahan2, Milton Thomas3, Richard M Enns3, Scott E Speidel3 and Samuel Paiva4, (1)National Center for Genetic Resources Preservation, USDA, Fort Collins, CO, (2)ARS, Ft Collins, CO, (3)Colorado State University, Fort Collins, CO, (4)EMBRAPA, Ft Collins, CO

W143: Cattle/Sheep/Goat 2 A Genetic Investigation of Isle of Jersey Cattle, the Foundation of the Jersey Breed

Heather J Huson1, Tad S Sonstegard2, James Godfrey3, David Hambrook3, Cari Wolfe4, George R Wiggans5, Harvey Blackburn6 and Curtis P Van Tassell7, (1)Cornell University, Ithaca, NY, (2)Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD, (3)Royal Jersey Agricultural and Horticultural Society, Trinity, United Kingdom, (4)American Jersey Cattle Association, Reynoldsburg, OH, (5)Animal Genomics and Improvement Laboratory, ARS-USDA, Beltsville, MD, (6)National Center for Genetic Resources Preservation, USDA, Fort Collins, CO, (7)USDA-ARS-AGIL, Beltsville, MD W144: Cattle/Sheep/Goat 2 The Use of PacBio and Hi-C Data in de novo Assembly of the Goat Genome

Derek Bickhart1, Sergey Koren2, Adam Phillippy2, Timothy PL Smith3, Ivan Liachko4, Joshua N Burton4, Brian Sayre5, Heather J Huson6, Steven G Schroeder1, Curtis P VanTassell1 and Tad S Sonstegard1, (1)Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD, (2)DOD - National Biodefense and Countermeasures Center, Frederick, MD, (3)USDA-ARS, US Meat Animal Research Center, Clay Center, NE, (4)University of Washington - Department of Genome Sciences, Seattle, WA, (5)Virginia State University, Petersburg, VA, (6)Cornell University, Ithaca, NY W145: Cattle/Sheep/Goat 2 Genomic Analyses for Palatability of Beef

Raluca Mateescu1, Dorian J Garrick2 and James M Reecy2, (1)Dept of Animal Sciences, University of Florida, Gainesville, FL, (2)Department of Animal Science, Iowa State University, Ames, IA

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W146: Cattle/Sheep/Goat 2 Utilisation of the Ovine HD SNP Chip for Meat Quality Traits in NZ Composite Terminal Sire Breeds

Shannon Clarke1, Michael Lee2, Rudiger Brauning1, Wendy Bain1, Tracey Van Stijn1, Rayna Anderson1, Ken Dodds1 and John McEwan1, (1)Invermay Agricultural Centre, AgResearch Ltd, Mosgiel, New Zealand, (2)University of Otago, Dunedin, New Zealand W147: Cattle/Sheep/Goat 2 DNA Methylation Affects Phenotypic Variation in Cattle Possessing Extreme Phenotypes for Residual Feed Intake

Stephanie McKay1, Jae Woo Kim2, Richard Chapple3, Robert D Schnabel4, Darren E Hagen2, Kevin Wells5, Derek Bickhart6, James E Koltes7, James M Reecy7, Jeremy F Taylor4 and Kristen Taylor8, (1)University of Vermont, Burlington, VT, (2)University of Missouri, Columbia, MO, (3)Baylor College of Medicine, Houston, TX, (4)Division of Animal Sciences, University of Missouri, Columbia, MO, (5)University of Missouri, Columba, MO, (6)Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD, (7)Department of Animal Science, Iowa State University, Ames, IA, (8)University of Missouri, Colubmia, MO W148: Cattle/Sheep/Goat 2 Mapping a Major Gene for Bovine Ovulation Rate

Brian W Kirkpatrick, University of Wisconsin-Madison, Madison, WI and Chris A Morris, AgResearch, Hamilton, New Zealand

W149: Cattle/Sheep/Goat 2 Evidence for Positive Selection of Taurine Genes within a QTL Region on Chromosome X Associated with Testicular Size in Australian Brahman Cattle

Russell Lyons, Animal Genetics Laboratory, School of Veterinary Science,The University of Queensland, Gatton, Australia, Nguyen To Loan, School of Chemistry and Molecular Bioscience, St Lucia, Australia, Marina R S Fortes, School of Chemistry and Molecular Bioscience, The University of Queensland, Australia, St Lucia, Australia, Matthew Kelly, Queensland Alliance for Agriculture & Food Innovation, St Lucia, Australia, Sean McWilliam, CSIRO Agriculture Flagship, St Lucia, Australia, Sigrid A Lehnert, CSIRO Agriculture Flagship, Brisbane, Australia and Stephen Moore, University of Queensland, Brisbane, Australia W150: Cattle/Sheep/Goat 2 Genome Changes Due to Forty Years of Artificial Selection Associated with Divergent Dairy Production and Reproduction

Tad S Sonstegard1, Li Ma2, Eui-Soo Kim1, Curtis P VanTassell3, George R Wiggans1, Brian A Crooker4, John B Cole1, George Liu1, John R Garbe5, Scott C Fahrenkrug6, F Abel Ponce De Leon4 and Yang Da4, (1)Animal Genomics and Improvement Laboratory, ARS-USDA, Beltsville, MD, (2)Department of Animal and Avian Sciences, University of Maryland, College Park, MD, (3)Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD, (4)Department of Animal Science, University of Minnesota, Saint Paul, MN, (5)Minnesota Supercomputer Institute, University of Minnesota, Minneapolis, MN, (6)Recombinetics, St Paul, MN

W151: Cattle/Sheep/Goat 2 Major Genes Influencing Prolificacy in Sheep: A Source of Basic Knowledge of Ovarian Function and a Tool for Genetic Improvement

Stéphane Fabre, Julie Demars, Laurence Drouilhet, Camille Mansanet, Gwenola Tosser-Klopp and Loys Bodin, INRA, Castanet Tolosan cedex, France W152: Cattle/Sheep/Goat 2 A Systems Biology Approach to Prioritize SNP and Genes Affecting Fertility in Tropical Beef Cattle

Laercio Portoneto, Sigrid A Lehnert and Antonio Reverter, CSIRO Agriculture Flagship, Brisbane, Australia W153: Cattle/Swine NIFA’s Role in Catalyzing Transformative Research in Animal Genomics

Parag Chitnis, National Institute of Food and Agriculture, Washington, DC W154: Cattle/Swine Identification of Causal Variants Using Next Generation Sequencing Data

Jeremy F Taylor, Jared E Decker, Lynsey K Whitacre, Jesse L Hoff, David J Patterson and Robert D Schnabel, Division of Animal Sciences, University of Missouri, Columbia, MO

W155: Cattle/Swine Discovery of Convergent Adaptations that Alleviate Heat Stress in Taurine Cattle

Tad S Sonstegard1, Derek Bickhart1, Antonio J Landaeta-Hernandez2, Yuri Tani Utsunomiya3, Melvin P Morales4, Esbal Jimenez4, Steven G Schroeder1, Jiajie Sun5, William Barendse6, Laercio R Porto Neto7, Antonio Reverter8, John B Cole5, Peter J Hansen9, Jose Fernando Garcia10 and Heather J Huson11, (1)Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD, (2)Universidad del Zulia, Maracaibo, Venezuela, (3)Faculdade de Ciências Agrárias e Veterinárias, UNESP - Univ Estadual Paulista, Araçatuba, Brazil, (4)University of Puerto Rico-Mayaguez, Mayaguez, PR, (5)Animal Genomics and Improvement Laboratory, ARS-USDA, Beltsville, MD, (6)Cooperative Research Centre for Beef Genetic Technologies, St Lucia, Australia, (7)The University of Queensland, School of Veterinary Science, Gatton QLD, Australia, (8)CSIRO Agriculture Flagship, Brisbane, Queensland, Australia, (9)University of Florida, Gainesville, FL, (10)Sao Paulo State University / UNESP, Sao Paulo, Brazil, (11)Cornell University, Ithaca, NY W156: Cattle/Swine Diachrony and Synchrony When Studying Pig Genomes

Miguel Perez-Enciso1, Oscar Ramirez2, William Burgos-Paz3, Erica Bianco3, Lourdes Vargas4 and Maria Sana5, (1)Centre for Research in Agrigenomics (CRAG) and ICREA, Barcelona, Spain, (2)Universitat Pompeu Fabra, barcelona, Spain, (3)Centre for Research in Agricultural Genomics, Bellaterra, Spain, (4)Sistema Nacional de Areas de Conservación, San Jose, Costa Rica, (5)Universitat Autonoma Barcelona, Bellaterra, Spain

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W157: Cattle/Swine GWAS for Direct and Indirect Effect on Androstenone

Naomi Duijvesteijn and Egbert Knol, Topigs Norsvin, Beuningen, Netherlands W158: Cattle/Swine Development and Utilization of Bioinformatic Tools in Livestock Genomics

James M Reecy, Department of Animal Science, Iowa State University, Ames, IA W159: Cattle/Swine Management and Visualization of Ianimal Quantitative Data Using iPlant and EPIC-CoGe

Sabarinath Subramaniam, Bio5 Institute, University of Arizona, Tucson, AZ W160: Citrus Genome An RNA-Seq Based Reference Transcriptome for Citrus

Javier Terol, Francisco R Tadeo and Manuel Talon, Centro de Genomica, IVIA, Moncada, Valencia, Spain

W161: Citrus Genome Exploiting the Citrus Genome Towards Understanding Genetic Traits Related to Fruit Quality and Disease Resistance

Marco A Takita1, Maiara Curtolo2, Mariangela Cristofani-Yaly1, Daniel Bedo Assumpção Castro3, Leonardo P Boava1, Evandro Henrique Schinor1, Marinês Bastianel1, Valdenice Moreira Novelli1 and Marcos Antonio Machado1, (1)Centro de Citricultura Sylvio Moreira, IAC, Cordeiropolis, SP, Brazil, (2)Centro de Energia Nuclear na Agricultura - USP, Piracicaba, SP, Brazil, (3)CBMEG, State University of Campinas, Campinas, Brazil W162: Citrus Genome Citrus Genome DB Updates

Sook Jung1, Julia Piaskowski1, Stephen P Ficklin1, Chun-Huai Cheng1, Ping Zheng1, Mercy Olmstead2, Albert G Abbott3, Chunxian Chen4, Lukas Mueller5, Fred G Gmitter6 and Dorrie Main1, (1)Washington State University, Pullman, WA, (2)University of Florida, Gainesville, FL, (3)UMR BFP1332 -INRA-Universite Bordeaux II, Villenave d'Ornon Cedex, France, (4)USDA-ARS, SEFNRL, Byron, GA, (5)Boyce Thompson Institute for Plant Research, Ithaca, NY, (6)University of Florida, IFAS-CREC, Lake Alfred, FL W163: Citrus Genome Verifying the Mandarin Breeding: Lessons from Parentage Analysis of Citrus Varieties

Tokurou Shimizu1, Akira Kitajima2, Terutaka Yoshioka1, Keisuke Nonaka3, Shingo Goto1, Eli Kaminuma4 and Yasukazu Nakamura4, (1)NARO Institute of Fruit Tree Science, Shizuoka, Japan, (2)Kyoto University, Osaka, Japan, (3)NARO Institute of Fruit Tree Science, Nagasaki, Japan, (4)Genome Informatics Laboratory, NIG, ROIS, Shizuoka, Japan

W164: Citrus Genome Comparative Analysis of the Chloroplast Genome of the Genus Citrus

Manuel Talon1, Jose Carbonell2, Roberto Alonso2, VIctoria Ibañez3, Javier Terol1 and Joaquin Dopazo2, (1)Centro de Genomica, IVIA, Moncada, Valencia, Spain, (2)Institute for Genomcis and Computational Medicine, CIPF, Valencia, Spain, (3)Centro de Genomica, IVIA, Moncada (Valencia), Spain W165: Climate Change and ICRCGC 1 Translational Genomics for Developing Climate-Change Ready Chickpeas

Rajeev K Varshney, ICRISAT, Greater Hyderabad, India W166: Climate Change and ICRCGC 1 Developing Disease Resistant Crop Varieties in the Changing Scenario of Global Warming and Climate Change

Rishu Sharma, Bidhan Chandra Agricultural University, Nadia, India W167: Climate Change and ICRCGC 1 Developing Insect Resistant Crop Varieties to Combat New Insects and New Biotypes

Wayne Hunter, USDA Agricultural Research Service, Fort Pierce, FL W168: Climate Change and ICRCGC 1 Developing Crop Varieties with Improved Nutrient-Use Efficiency

David A Lightfoot, Southern Illinois University, Carbondale, IL

W169: Climate Change and ICRCGC 1 Advances in the Breeding and Genetics of Heat Tolerance to Alleviate the Effects of Climate Change, with a Focus on Common Bean

Timothy Porch1, Angela M Linares2, Juan Carlos Rosas3, Damaris Santana4, John Hart1, Phillip Griffiths5 and James Beaver4, (1)USDA-ARS Tropical Agriculture Research Station, Mayaguez, PR, (2)USDA-ARS, Mayaguez, PR, (3)Escuela Agricola Panamericana, Tegucigalpa, Honduras, (4)University of Puerto Rico, Mayaguez, PR, (5)Cornell University, Geneva, NY W170: Climate Change and ICRCGC 1 Uncovering Major and Minor QTLs Generating Natural Variation in Heading Date Among Asian Rice Cultivars

Kiyosumi Hori and Masahiro Yano, National Institute of Agrobiological Sciences, Tsukuba, Japan W171: Climate Change and ICRCGC 1 Fostering Global Collaboration to Combat Climate Change through Networking of Existing Crop-Based Consortia

Robert Henry, University of Queensland QAAFI, Brisbane, Australia W172: Climate Change and ICRCGC 2 Using Whole-Genome Sequences for Breeding Climate Resilient Cereals

Jane Rogers, International Wheat Genome Sequencing Consortium, Cambridge, United Kingdom, Catherine Feuillet, Bayer CropScience, Morrisville, NC, Jan E Leach, Colorado State University, Fort Collins, CO, Angela Records, USAID/BFS/ARP, Washington, DC, Elodie Rey, Institute of Experimental Botany AS CR, Olomouc - Holice, Czech Republic and Kellye Eversole, IWGSC, Bethesda, MD

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W173: Climate Change and ICRCGC 2 Developing Crop Varieties with Genome Plasticity

Jauhar Ali, PBGB, International Rice Research Institute, Metro Manila, Philippines W174: Climate Change and ICRCGC 2 Designing Flowering Times for Climate Optimized Grain and Energy Sorghum Crops

John Mullet1, Daryl Morishige1, William Rooney1, Rebecca Murphy2 and Shanshan Yang3, (1)Texas A&M University, College Station, TX, (2)Centenary College, College Station, TX, (3)Texas A&M Unviversity, College Station, TX W175: Climate Change and ICRCGC 2 Mining Climate Smart Genes from Allied Gene Pools

Michael Abberton, International Institute of Tropical Agriculture (IITA), Ibadan, Nigeria W176: Climate Change and ICRCGC 2 CO2 Sequestration to Mitigate Effects of Climate Change

Leland J Cseke, The University of Alabama in Huntsville, Huntsville, AL W177: Climate Change and ICRCGC 2 Adapting Crops to Climate Changes by Evolutionary-Participatory Plant Breeding

Salvatore Ceccarelli, Free Lance, Patancheru, India

W178: Coffee Genomics Long-Read Deep Sequencing and Assembly of the Allotetraploid Coffea arabica cv Caturra and its Maternal Ancestral Diploid species Coffea eugenioides

Alvaro Gaitan1, Marco A Cristancho1, Carmenza E Gongora1, Pilar Moncada1, Huver Posada1,2, Fernando Gast1, Marcela Yepes3 and Herb Aldwinckle3, (1)Centro Nacional de Investigaciones de Cafe, CENICAFE, Chinchiná, Colombia, (2)Federacion Nacional de Cafeteros de Colombia (FNC)/ Centro Nacional de Investigaciones de Café (CENICAFE), Chinchina, Caldas, Colombia, (3)Cornell University, Geneva, NY W179: Coffee Genomics Progress report on the sequencing and assembly of the allotetraploid Coffea arabica var Bourbon genome

Michele Morgante1,2, Simone Scalabrin3, Davide Scaglione3, Federica Cattonaro2, Federica Magni2, Irena Jurman2, Mario Cerutti4, Furio Suggi Liverani5, Luciano Navarini5, Lorenzo Del Terra5, Gloria Pellegrino4, Giorgio Graziosi6, Nicola Vitulo7 and Giorgio Valle7, (1)Università di Udine, Udine, Italy, (2)Istituto di Genomica Applicata, Udine, Italy, (3)IGA Technology Services, Udine, Italy, (4)Lavazza SpA, Torino, Italy, (5)Illycaffè SpA, Trieste, Italy, (6)DNA Analytica Srl, Trieste, Italy, (7)Dipartimento di Biologia; Università di Padova, Padova, Italy

W180: Coffee Genomics Dihaploid Coffea arabica Genome Sequencing and Assembly

Alexandre de Kochko1, Dominique Crouzillat2, Michel Rigoreau2, Maud Lepelley2, Laurence Bellanger2, Virginie Merot l'Anthoene2, Celine Vandecasteele2, Romain Guyot3, Valerie Poncet3, Christine Tranchant-Dubreuil1, Perla Hamon3, Serge Hamon3, Emmanuel Couturon3, Patrick Descombes4, Deborah Moine4, Lukas Mueller5, Susan R Strickler5, Alan Andrade6, Luiz-Filipe Protasio Pereira7, Pierre Marraccini8, Giovanni Giuliano9, Alessia Fiore10, Marco Pietrella10, Giuseppe Aprea10, Ray Ming11, Jennifer Wai12, Douglas S Domingues13, Alexandre Paschoal14, Gerrit Kuhn15, Jonas Korlach15, Jason Chin15, David Sankoff16, Chunfang Zheng16 and Victor A Albert17, (1)IRD UMR DIADE, Montpellier, France, (2)Centre R&D Nestlé Tours, Tours, France, (3)IRD UMR DIADE, Montpellier cedex 5, France, (4)NIHS, Lausanne, Switzerland, (5)Boyce Thompson Institute for Plant Research, Ithaca, NY, (6)Embrapa, Brasilia, Brazil, (7)Embrapa Café, Londrina, Brazil, (8)CIRAD, Brasilia, Brazil, (9)ENEA - Italian Agency for New Technologies, Roma, Italy, (10)ENEA - Italian Agency for New Technologies, Rome, Italy, (11)University of Illinois at Urbana-Champaign, Urbana, IL, (12)University of Illinois Urbana-Champaign, Urbana Champaign, IL, (13)Instituto Agronômico do Paraná, Londrina, Brazil, (14)Univ of Londrina, Londrina, Brazil, (15)Pacific Biosciences, Menlo Park, CA, (16)University of Ottawa, Ottawa, ON, Canada, (17)University of Buffalo, Buffalo, NY

W181: Coffee Genomics Transposable Element Distribution, Abundance and Impact in Genome Evolution in the Genus Coffea

Romain Guyot1, Thibaud Darre2, Dominique Crouzillat3, Michel Rigoreau3, Serge Hamon4, Alexandre de Kochko2, Emmanuel Couturon1 and Perla Hamon1, (1)IRD UMR DIADE, Montpellier cedex 5, France, (2)Institut de Recherche pour le Développement, Montpellier cedex 5, France, (3)Centre R&D Nestlé Tours, Tours, France, (4)Institut de Recherche pour le Développement, Montpellier Cedex 5, France W182: Coffee Genomics Impact of Transposable Elements on the Evolution of Coffea arabica (Rubiaceae)

Elaine S Dias1, Serge Hamon2, Perla Hamon2, Romain Guyot2, Alexandre de Kochko2 and Claudia Carareto1, (1)UNESP - Universidade Estatual Paulista, São José do Rio Preto, SP, Brazil, (2)IRD UMR DIADE, Montpellier cedex 5, France W183: Comparative Genomics One Plant - Multiple Genomes: Phasing Homeologs in Polyploid Wheat

Ksenia Krasileva1, Vince Buffalo1, Sarah Ayling2, Paul C Bailey2, Schichen Wang3, Hans Vasquez-Gross4, Stephen Pearce1, Cristobal Uauy5 and Jorge Dubcovsky1, (1)University of California Davis, Davis, CA, (2)The Genome Analysis Centre, Norwich, United Kingdom, (3)Kansas State University, Manhattan, KS, (4)Department of Plant Sciences, University of California, Davis, Davis, CA, (5)John Innes Centre, Norwich, England

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W184: Comparative Genomics Comprehensive De Novo genome Assemblies and Resequencing of Diverse Individuals Provides Insights into Structural Diversity and the Relationship with Transcriptional Diversity in Maize

Candice Hirsch1, Cory D Hirsch1, Alex Brohammer1, Megan J Bowman2, Kevin L Childs2, Ilya Soifer3, Omer Barad4, C Robin Buell2, Natalia de Leon5, Mark A Mikel6 and Shawn Kaeppler5, (1)University of Minnesota, Saint Paul, MN, (2)Michigan State University, East Lansing, MI, (3)NRGENE LTD, Ness-Ziona, Israel, (4)NRGENE LTD, Ness-Ziona, Israel, (5)University of Wisconsin-Madison, Madison, WI, (6)University of Illinois at Urbana-Champaign, Urbana, IL W185: Comparative Genomics Genomic Insights into the Evolution of Angiosperms

Joachim Messing, Rutgers University, Piscataway, NJ W186: Comparative Genomics FROM ONE TO THE MANY GENOMES OF A PLANT: THE EVOLUTION OF THE GRAPEVINE PAN-GENOME

Gabriele Magris1,2, Sara Pinosio2,3, Fabio Marroni1,2, Gabriele Di Gaspero1,2 and Michele Morgante1,2, (1)Università di Udine, Udine, Italy, (2)Istituto di Genomica Applicata, Udine, Italy, (3)Plant Genetics Institute, National Research Council, Florence, Italy W187: Comparative Genomics Comparative Epigenomics: Exploring Patterns of DNA Methylation throughout Flowering Plants

Robert Schmitz, University of Georgia, Athens, GA

W188: Comparative Genomics Slow Rate of Genome Evolution and Frequent Cycles of WGD followed by Dysploid Reduction in Woody Rosids

Jan Dvorak1, Ming-Cheng Luo2, Frank M You3, Ji-Rui Wang4, Tingting Zhu1, Pingchuan Li5, Abhaya Dandekar6, Charles Leslie7, Pat McGuire1 and Mallikarjuna Aradhya8, (1)Department of Plant Sciences, University of California, Davis, CA, (2)University of California, Davis, CA, (3)Agriculture and Agri-Food Canada, Winnipeg, MB, Canada, (4)Sichuan Agricultural University, China, Chengdu, SC, China, (5)Agriculture and Agri-Food Canada, Morden, MB, Canada, (6)University of California Davis, Davis, CA, (7)UCDAVIS, DAVIS, CA, (8)USDA National Clonal Germplasm Repository, Davis, CA W189: Components of Apomixis Stress Response of Reproductive Pathways in Facultative Apomictic Ranunculus Auricomus Hybrids

Elvira Hoerandl1, Simone Klatt2, Ladislav Hodac2, Diego Hojsgaard2, Franz Hadacek2, Tim Sharbel3 and Marco Pellino3, (1)Georg-August-University of Goettingen, Gottingen, Germany, (2)Georg-August-University of Goettingen, Goettingen, Germany, (3)IPK Gatersleben, Gatersleben, Germany W190: Components of Apomixis Hot on the Trail of the Sex-Apomixis Switch in Boechera (Brassicaceae)

John G Carman1, Mayelyn Mateo de Arias1, Susan M Nelson1, Xinghua Zhao2, Lei Gao1, Manoj Srivastava3, David A Sherwood1 and Michael D Windham4, (1)Utah State University, Logan, UT, (2)Inner Mongolia Agricultural University, Hohhot, China, (3)Indian Grassland and Fodder Research Institute, Jhansi, India, (4)Duke University, Durham, NC

W191: Components of Apomixis Male Apomixis: An Alternative Strategy to Synthetically Engineer Clonal Seed Formation in Plants

Nico De Storme, Ghent University, Gent, Belgium W192: Components of Apomixis Harnessing Components of Apomixis for Agricultural Productivity

Shai J Lawit, Mark A Chamberlin, Tim Fox, Michelle Van Allen and Marc C Albertsen, DuPont Pioneer, Johnston, IA W193: Components of Apomixis Flower Transcriptomics for Uncovering Genes Related to Plant Reproduction in the Facultative Apomict Hypericum perforatum L

Gianni Barcaccia1, Giulio Galla1 and Tim Sharbel2, (1)University of Padua, Legnaro, Italy, (2)IPK Gatersleben, Gatersleben, Germany W194: Components of Apomixis Muller's Ratchet and Adaptation in Sympatric Sexual and Apomictic Boechera Lineages

John T Lovell1, Robert J Williamson2, Stephen I Wright2, John K McKay3 and Timothy F Sharbel4, (1)University of Texas, Austin, Austin, TX, (2)University of Toronto, Toronto, ON, Canada, (3)Colorado State University, Fort Collins, CO, (4)IPK Gatersleben, Gatersleben, Germany

W195: Compositae Transposable Elements Drive Lineage-Specific Patterns of Genome Expansion and Turnover in the Asteraceae

S Evan Staton, University of British Columbia, Vancouver, BC, Canada W196: Compositae Associating Phenotype to Genotype in Lettuce Using NGS, in silico Analyses, High Resolution Genetic Maps and Targeted Fine Mapping

Dean Lavelle, Sebastian Reyes Chin-Wo, Alexander Kozik, Maria Jose Truco, Lutz Froenicke, Marilena Christopoulou, Angel Fernandez i Marti, Miguel Macias Gonzalez, Carolina Font i Forcada, Huaqin Xu and Richard Michelmore, Genome Center, University of California, Davis, CA W197: Compositae The Accumulation of Deleterious Mutations As a Consequence of Domestication and Improvement in Sunflowers

Sebastien Renaut, Université de Montréal, Montreal, QC, Canada and Loren H Rieseberg, University of British Columbia, Vancouver, BC, Canada W198: Compositae Survey of Reproductive Barriers in an Interspecific Lettuce Hybrid

Marieke Jeuken, Plant Breeding, Wageningen University & Research, Wageningen, Netherlands

156

W199: Compositae Developing Guayule (Parthenium argentatum A Gray) as a Commercial Source of Natural Rubber: Germplasm Characterization, Genotyping, and Genome Sequencing

Daniel Ilut, Cornell University, Ithaca, NY W200: Computational Gene Discovery Chromosome-Scale Scaffolding of de novo Genome Assemblies Using Hi-C

Joshua N Burton and Ivan Liachko, University of Washington - Department of Genome Sciences, Seattle, WA W201: Computational Gene Discovery Annotation of Protein Coding Genes for Non-Model de-novo Sequenced Organisms

Anna Vlasova, Francisco Câmara Ferreira, Didac Santesmasses Ruiz, Mariotti Marco and Roderic Guigo, Center for Genomic Regulation, Barcelona, Spain W202: Computational Gene Discovery Complexity of Gene Landscape Beyond Model Organisms

Stephane Rombauts, Ghent University, Gent, Belgium and Yves Van de Peer, VIB Ghent University, Ghent, Belgium

W203: Computational Gene Discovery Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and Augustus

Simone Lange1, Katharina Hoff1, Alexandre Lomsadze2, Mark Borodovsky3 and Mario Stanke1, (1)University of Greifswald, Greifswald, Germany, (2)Georgia institute of Technology, Atlanta, GA, (3)Georgia Institute of Technology, Atlanta, GA W204: Computational Gene Discovery Integration of ab initio Gene Finding with Mapping of Homologous Proteins

Alexandre Lomsadze, Georgia Institute of Technology, Atlanta, GA W205: Computational Gene Discovery Automated Interpretation of Metabolic Capacity from Complete Genomes Using KEGG Modules

Minoru Kanehisa, Institute for Chemical Research, Kyoto University, Kyoto, Japan W206: Computational Gene Discovery Proteogenomics of Cancer: Peptides to Events

Seong W Cha, University of California San Diego, San Diego, CA

W207: Cool Season Legumes Fungal Phytotoxins and Ascochyta Blights of Cool Season Food Legumes

Wonyong Kim1, Tobin Peever1, George J Vandemark2 and Weidong Chen2, (1)Washington State University, Pullman, WA, (2)USDA-ARS Washington State University, Pullman, WA W208: Cool Season Legumes Genotyping by Sequencing Reveals the Genetic Diversity of the USDA Pisum Diversity Collection

William L Holdsworth1, Yu Ma2, Peng Cheng2, Rebecca McGee2, Clare Coyne2, Michael A Gore1 and Michael Mazourek1, (1)Cornell University, Ithaca, NY, (2)Washington State University, Pullman, WA W209: Cool Season Legumes Len Gen: The International Lentil Genome Sequencing Project

Kirstin Bett1, Larissa Ramsay1, Crystal Chan1, Andrew G Sharpe2, Douglas R Cook3, R Varma Penmetsa4, Peter Chang5, Clarice J Coyne6, Rebecca McGee7, Dorrie Main7 and Albert Vandenberg1, (1)University of Saskatchewan, Saskatoon, SK, Canada, (2)National Research Council Canada, Saskatoon, SK, Canada, (3)University of California at Davis, Davis, CA, (4)University of California, Davis, CA, (5)University of Southern California, Los Angeles, CA, (6)USDA ARS, Pullman, WA, (7)Washington State University, Pullman, WA

W210: Cool Season Legumes The International Pea Genome Sequencing Project: Sequencing and Assembly Progresses Updates

Mohammed-Amin Madoui1, Karine Labadie2, Jean-Marc Aury3, Clarice J Coyne4, Tom Warkentin5, Jonathan Kreplak6, Judith Lichtenzveig7, Jaroslav Dolezel8, Grégoire Aubert9, Hélène Bergès10, Patrick Wincker2 and Judith Burstin9, (1)CEA, Evry cedex, France, (2)CEA - Genoscope, Evry, France, (3)CEA-Genoscope, evry, France, (4)USDA ARS, Pullman, WA, (5)University of Saskatchewan, Saskatoon, SK, Canada, (6)INRA, Dijon, France, (7)Curtin University, WA, Australia, (8)Institute of Experimental Botany, Olomouc, Czech Republic, (9)INRA UMR1347, Dijon Cedex, France, (10)INRA - CNRGV, Castanet Tolosan, France W211: Cool Season Legumes Back To The Future: Prospecting Wild Crop Relatives For Crop Improvement Of Chickpea

R Varma Penmetsa, University of California Davis, Davis, CA W212: Cool Season Legumes Comprehensive Genome Sequencing Analysis of 292 Cajanus Accessions

Rachit K Saxena1, Hari D Upadhyaya1, Obarley Yu2, Changhoon Kim3, Abhishek Rathore1, Dong Seon3, Aamir W Khan1, Jihun Kim3, Shaun An2, G Anuradha4, Vinay Kumar1, Wei Zhang2, PS Dharmaraj5, Bellbull Kim3, Swapan K Datta6 and Rajeev K Varshney1, (1)ICRISAT, Hyderabad, India, (2)Millennium Genomics Inc, Shenzhen, China, (3)MACROGEN Inc, Seoul, South Korea, (4)Acharaya NG Ranga Rao Agricultural University, Hyderabad, India, (5)University of Agricultural Sciences, ARS-Gulbarga, Raichur, India, (6)ICAR, New Dehli, India

157

W213: Cotton Genome Initiative (ICGI) CenH3 Evolution in Diploids and Polyploids of Three Angiosperm Genera

Rick Masonbrink, Joseph P Gallagher, Josef Jareczek, Simon Renny-Byfield, Lei Gong, Jonathan F Wendel and Corrinne E Grover, Iowa State University, Ames, IA W214: Cotton Genome Initiative (ICGI) Gene Conversion and Cotton Allotetraploid Evolution

Justin T Page, Brigham Young University, Provo, UT W215: Cotton Genome Initiative (ICGI) Comparison of Four Mitochondrial Genomes (Gossypium) and Analysis on the Candidate Genes of Two Cytoplasmic Male Sterile Lines in Cotton

Jinping Hua, China Agricultural University, BEIJING 100193, China W216: Cotton Genome Initiative (ICGI) DNA Methylation Dynamics during Fiber and Ovule Development

Qingxin Song, UT Austin, Austin, TX W217: Cotton Genome Initiative (ICGI) Draft Genome of the High-Fibre-Quality Allotetraploid Cotton Gossypium barbadense

Daojun Yuan, Huazhong Agricultural University, Wuhan, China

W218: Cotton Genome Initiative (ICGI) 1-Minute Oral Presentations

David Stelly, Texas A&M University, College Station, TX W219: CSSA: Translational Genomics Determinacy in Common Bean: Duplications, Redundancies, and Multiple Domestications

Paul Gepts1, Myoung-hai Kwak2, Dianne M Velasco1, Shelby Ellison3, Tamara Iva Miller1 and Andrea Ariani1, (1)University of California, Davis, CA, (2)WGRC, National Institute of Biological Resouces, Incheon, South Korea, (3)Department of Horticulture, University of Wisconsin, Madison, WI W220: CSSA: Translational Genomics Evaluating Genomic Selection in the First Two Cycles of a Winter Barley Breeding Program

Celeste Marie Falcon, University of Minnesota, St Paul, MN W221: CSSA: Translational Genomics A Good Day to Flower: Environmental Dependent Genetic Control of Flowering Time in Common Bean

Mehul Bhakta, Horticultural Sciences Department, Gainesville, FL

W222: CSSA: Translational Genomics Orange Is the New Yellow: Cracking the Genetic Code Controlling Beta-Carotene Accumulation in Carrot

Shelby L Ellison1, Massimo Iorizzo1, Douglas Senalik2 and Philipp W Simon3, (1)University of Wisconsin-Madison, Madison, WI, (2)USDA-ARS, Madison, WI, (3)USDA-ARS and University of Wisconsin-Madison, Madison, WI W223: CSSA: Translational Genomics Mining Plant Collections Using Phenotyping and High-Throughput Sequencing for Accelerated Crop Improvement - a Case Study of the Native American Bean Apios americana

Vikas Belamkar1, Nathan T Weeks2, Andrew D Farmer3, Scott R Kalberer2, Jugpreet Singh4, Alex Wenger5, V Gautam Bhattacharya6, William J Blackmon7 and Steven B Cannon2, (1)Iowa State University, Ames, IA, (2)USDA-ARS-CICGRU, Ames, IA, (3)National Center for Genome Resources, Santa Fe, NM, (4)ORISE Fellow, USDA-ARS-CICGRU, Ames, IA, (5)Independent Researcher, Lititz, PA, (6)Independent Researcher, Ithaca, NY, (7)Independent Researcher, Mechanicsville, VA W224: CSSA: Translational Genomics Genome Wide Association Study of Metabolites in Maize

Jianbing Yan, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China

W225: Cucurbit Resemblance and Differences in the Feral (C lanatus subsp lanatus) and Cultivated Watermelon (C lanatus subsp vulgaris) Genomes

Shaogui Guo1, Honghe Sun1, Jinbo Zhang2, Yi Ren1, Haiying Zhang1, Jie Zhang1, Guoyi Gong1, Ruiqiang Li2, Zhangjun Fei3 and Yong Xu1, (1)National Engineering Research Center for Vegetables, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China, (2)Novogene Bioinformatics Institute, Beijing, China, (3)Boyce Thompson Institute for Plant Research, Ithaca, NY W226: Cucurbit Genome Sequencing of Cucurbita Species

Zhangjun Fei, Cornell University, Ithaca, NY W227: Cucurbit Transcriptome-Based Ultra-High Resolution QTL Analysis of Fruit Quality Traits in Melon

Navot Galpaz1, Itay Gonda1, Doron Shem Tov2, Omer Barad3, Shery Lev1, Galil Tzury1, Zhangjun Fei4, Vitaly Portnoy1, Rotem Harel-Beja1, Adi Doron-Faigenboim5, Merav Kenigswald1, Einat Bar1, Eran Halperin2, Guy Kol6, Yaakov (Kobi) Tadmor1, Joseph Burger1, Ari Schaffer5, Efraim Lewinsohn1, James Giovannoni7 and Nurit Katzir1, (1)Agricultural Research Organization (ARO), Newe Ya'ar Research Center, Israel, (2)Tel Aviv University, Tel Aviv, Israel, (3)NRGENE LTD, Ness-Ziona, Israel, (4)Boyce Thompson Institute for Plant Research, Ithaca, NY, (5)Volcani Center, ARO, Bet Dagan, Israel, (6)NRGENE Ltd, Ness-Ziona, Israel, (7)USDA-ARS and Boyce Thompson Institute for Plant Research, Ithaca, NY

158

W228: Cucurbit Genome Wide Association (GWAS) Mapping of Trichome Density and Length in Watermelon

Abiodun Bodunrin1, Thangasamy Saminathan1, Padma Nimmakayala2 and Umesh K Reddy2, (1)West Virginia State University, Institute, WV, (2)Department of Biology, West Virginia State University, Institute, WV W229: Cucurbit Sequencing and Assembly of the Genome of an American Watermelon Ecotype, Charleston Gray

Linyong Mao1, Honghe Sun1, Yi Zheng1, Chen Jiao1, Patrick Wechter2, Kai-Shu Ling2, Yaakov (Kobi) Tadmor3, Nurit Katzir3, Alvaro Hernandez4, Padma Nimmakayala5, Umesh K Reddy5, Shaogui Guo6, Yong Xu6, Amnon Levi2 and Zhangjun Fei1, (1)Boyce Thompson Institute for Plant Research, Ithaca, NY, (2)USDA-ARS, Charleston, SC, (3)Agricultural Research Organization, Newe Ya'ar Research Center, Ramat Yishay, Israel, (4)Roy J Carver Biotechnology Center, Urbana, IL, (5)Department of Biology, West Virginia State University, Institute, WV, (6)National Engineering Research Center for Vegetables, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China W230: Cucurbit A Major QTL Is Associated with Fusarium Wilt Race 1 Resistance in Watermelon

Shaunese Lambel1, Brenda Lanini1, Elisabetta Vivoda1, Julie Fauve1, Patrick Wechter2, Karen Harris3, Laura Massey4 and Amnon Levi4, (1)HM CLAUSE Seed Company, Davis, CA, (2)USDA-ARS, Cherleston, SC, (3)USDA, ARS,, TIFTON, GA, (4)USDA, ARS, US Vegetable Laboratory, Charleston, SC

W231: Cultivating Broader Impact Programs: Developing and Executing a Successful Program for Current and Future Grants Bridging the Gap with Undergraduate Internships: Pennsylvania State University's Hardwood Genomics Outreach Component with the University of West Alabama

Ketia Shumaker, The University of West Alabama, Livingston, AL W232: Cultivating Broader Impact Programs: Developing and Executing a Successful Program for Current and Future Grants SOYMAP II: Nurturing Successful Relationships that Highlight Plant Research, Cultural Diversity and Collaboration

Michael D Gonzales, University of Georgia, Albuquerque, NM W233: Cultivating Broader Impact Programs: Developing and Executing a Successful Program for Current and Future Grants Perspectives on Broader Impacts

Diane Jofuku Okamuro, National Science Foundation, Arlington, VA W234: Degraded DNA and Paleogenomics How Do You Know When You Don't Have Any Ancient DNA?

Ian Barnes, Natural History Museum, London, United Kingdom W235: Degraded DNA and Paleogenomics The Best Bones, Imputation and Ancient Genomics

Daniel G Bradley, Trinity College Dublin, Dublin, Ireland

W236: Degraded DNA and Paleogenomics Time, Temperature, and Tiling Density When Capturing Ancient DNA

Jake Enk, Biodiscovery, LLC (dba MYcroarray), Ann Arbor, MI W237: Degraded DNA and Paleogenomics Ancient DNA: From Genomes to Epigenomes

Ludovic Orlando, Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark W238: Degraded DNA and Paleogenomics Genomic Diversity and Population Dynamics of the Woolly Mammoth Prior to Its Extinction

Eleftheria Palkopoulou1, Swapan Mallick2, Pontus Skoglund2, Jake Enk3, Nadin Rohland4, Heng Li5, Ayca Omrak6, Sergey Vartanyan7, Hendrik Poinar8, Anders Götherström6, David Reich2 and Love Dalen1, (1)Swedish Museum of Natural History, Stockholm, Sweden, (2)Department of Genetics, Harvard Medical School, Boston, MA, (3)Biodiscovery, LLC (dba MYcroarray), Ann Arbor, MI, (4)Department of Genetics Harvard Medical School, Boston, MA, (5)Broad Institute of MIT and Harvard, Cambridge, MA, (6)Department of Archaeology and Classical Studies, Stockholm University, Stockholm, Sweden, (7)North-East Interdisciplinary Scientific Research Institute N A N A Shilo, Far East Branch, Russian Academy of Sciences (NEISRI FEB RAS), Magadan, Russia, (8)McMaster Ancient DNA Centre, Department of Anthropology, McMaster University, Hamilton, ON, Canada

W239: Degraded DNA and Paleogenomics Resolving the Evolutionary Relationships of Two Enigmatic Ungulates from Pleistocene North America

Peter D Heintzman1, Grant Zazula2 and Beth Shapiro1, (1)Department of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, CA, (2)Government of Yukon, Department of Tourism and Culture, Whitehorse, YT, Canada W240: Degraded DNA and Paleogenomics Direct Evidence of Milk Consumption from Ancient Human Dental Calculus

Christina Warinner, Dr Christina Warinner - University of Oklahoma - Department of Anthropology, Norman, OK W241: Degraded DNA and Paleogenomics A Palaeometagenomic Approach to Track the Neolithisation of Northern Europe

Robin G Allaby, University of Warwick, Warwick, United Kingdom W242: Development and Application of Transgenic Technology in Agriculture Gene Editing in Plants using CRISPR/Cas and TALENs

Jian-Kang Zhu, Purdue University, West Lafayette, IN

159

W243: Development and Application of Transgenic Technology in Agriculture Lessons Learnt from Transgenic Gene Pyramiding for Classical Resistance Breeding in Wheat

Beat Keller1, Severine Hurni2 and Daniel Stirnweis1, (1)University of Zurich, Zurich, Switzerland, (2)University of Zürich, Zurich, Switzerland W244: Development and Application of Transgenic Technology in Agriculture Plant Genome Editing and Precision Breeding with CRISPR-Cas9 System

Yinong Yang, Pennsylvania State University, University Park, PA W245: Development and Application of Transgenic Technology in Agriculture Sanding the Rough Edges: In Search of Enhanced Performance of Engineered Enzymes in Transgenic Systems

Jay Shockey, USDA-ARS, Southern Regional Research Center, New Orleans, LA W246: Development and Application of Transgenic Technology in Agriculture Targeted Mutagenesis of the Tomato Procera Gene Using TALENs

Vai Lor, University of Minnesota, St Paul, MN W247: Domestication Genomics The Consequence of Domestication in the Common Bean

Roberto Papa, Università Politecnica delle Marche, Ancona, Italy

W248: Domestication Genomics Loci Involved in Domestication and Improvement of Cultivated Potato As Revealed through Genotyping of Two Diversity Panels

C Robin Buell1, Michael Hardigan1, John Bamberg2 and David Douches1, (1)Michigan State University, East Lansing, MI, (2)USDA ARS, Sturgeon Bay, WI W249: Domestication Genomics Yeast

Justin Fay, Washington University School of Medicine, St Louis, MO W250: Domestication Genomics The Origin of Orange Pigment in Carrot

Shelby L Ellison1, Massimo Iorizzo1, Douglas Senalik2 and Philipp W Simon3, (1)University of Wisconsin-Madison, Madison, WI, (2)USDA-ARS, Madison, WI, (3)USDA-ARS and University of Wisconsin-Madison, Madison, WI W251: Domestication Genomics Maize and Teosinte

Matthew Hufford, Iowa State University, Ames, IA

W252: Domestication Genomics Admixture and Selection after Initial Domestication of Cattle

Jared E Decker1, Jinming Huang2, Miranda L Wilson3, Tara Fountain3, Lynsey Whitacre1, Luciana CA Regitano4, Robert D Schnabel5 and Jeremy F Taylor5, (1)University of Missouri, Columbia, MO, (2)Shandong Academy of Agricultural Sciences, Jinan, China, (3)University of Missouri, COLUMBIA, MO, (4)Embrapa Southeast Livestock, São Carlos, Brazil, (5)Division of Animal Sciences, University of Missouri, Columbia, MO W253: Ecological Genomics Biochar Alters the Soil Microbiome: Results from Amplicon Surveys of Three European Field Sites

Gail Taylor and Joseph Jenkins, University of Southampton, Southampton, United Kingdom W254: Ecological Genomics Patterns of Gene Loss in Population Genomic Data - Identifying Disposable Genes

Jacqueline Batley, University of Western Australia, Crawley, Australia W255: Ecological Genomics Ecological Genomics of Native and Invading Yellow Starthistle and Its Biocontrol Insect

Brittany Barker, University of Arizona, Tucson, AZ

W256: Ecological Genomics Genomics of Adaptation and Diversificaiton in Cannabis

Nolan Kane, University of Colorado, Boulder, CO W257: Ecological Genomics Understanding Climate Adaptation through Genome-Wide Patterns of Differentiation and Local Selection in Populus balsamifera How Important Are Peripheral Populations?

Vikram Chhatre1, Matthew Fitzpatrick2 and Stephen Keller1, (1)University of Vermont, Burlington, VT, (2)University of Maryland Center for Environmental Sciences, Frostburg, MD W258: DNA Subway: Genomics, DNA Barcoding, and RNA-Seq Made Easy for the Undergraduate Classroom Simplifying Genome Annotation and Examples of Large-Scale Projects in DNA Barcoding (Red and Blue Lines)

Dave Micklos, DNA Learning Center, Cold Spring Harbor, NY W259: DNA Subway: Genomics, DNA Barcoding, and RNA-Seq Made Easy for the Undergraduate Classroom Transposable Elements, Gene Discovery, and DNA Barcoding (Yellow and Blue Lines)

James Burnette, University of California, Riverside, Riverside, CA

160

W260: DNA Subway: Genomics, DNA Barcoding, and RNA-Seq Made Easy for the Undergraduate Classroom Bringing Authentic Genomics Research into the Classroom: Analysis of Maize Stress Response (Green Line)

Irina Makarevitch, Hamline University, Saint Paul, MN W261: DNA Subway: Genomics, DNA Barcoding, and RNA-Seq Made Easy for the Undergraduate Classroom Large Dataset Analysis for Undergraduates: Discovery Environment, RNA-Seq and Leaf Senescence in Arabidopsis thaliana (Green Line)

Judy A Brusslan, California State University, Long Beach, Long Beach, CA W262: Engineering NUE Assessing Nitrogen Metabolism Using Genome-Scale Models in Maize

Margaret Simons1, Rajib Saha2, Nardjis Amiour3, Akhil Kumar1, Lena!g Guillard3, Gilles Clément3, Martine Miquel3, Zhenni Li3, Grégory Mouille3, Peter J Lea4, Bertrand Hirel3 and Costas D Maranas1, (1)The Pennsylvania State University, University Park, PA, (2)Washington University in St Louis, St Louis, MO, (3)Institut Jean-Pierre Bourgin, Institut National de la Recherche Agronomique, Versailles, France, (4)Lancaster University, Lancaster, United Kingdom

W263: Engineering NUE Increasing Biomass Production with Reduced Inputs in Non-Legume Crops Using N-Fixing Endophytes of Poplar

Sharon L Doty1, Zareen Khan1, Andrew W Sher2, Mahsa Khorasani1, Neil D Fleck1, Shyam Kandel1, Jenny L Knoth1, Amy S Baum1, Thomas H DeLuca1 and Soo-Hyung Kim1, (1)University of Washington, Seattle, WA, (2)University of California San Diego, San Diego, CA W264: Engineering NUE Nitrogen Utilization and Remobilization in Arabidopsis Under Nitrogen Depletion

Adel Zayed, Monsanto Company, Chesterfield, MO and Robert Crosby, Monsanto, RTP, NC W265: Engineering NUE Deciphering the Genetic Control of Yield and Yield Components of Winter Oilseed Rape (Brassica napus L) Grown Under Nitrogen Constraints with Combined Linkage and Association Analyses

Anne-Sophie Bouchet1, Anne Laperche2, Christine Bissuel3 and Nathalie Nesi1, (1)INRA IGEPP, Le Rheu, France, (2)AGROCAMPUS OUEST, Rennes, France, (3)AGROCAMPUS OUEST, le Rheu, France W266: Engineering NUE Nitrogen Influence on Lateral Root Development of Brassicaceae Species

Christian Hermans, Hugues De Gernier, Jérôme De Pessemier, Laszlo Kupcsik and Jiajia Xu, Université Libre de Bruxelles, Brussels, Belgium

W267: EPIC: the Plant Epigenome Project Chromatin Dynamics during DNA Replication

Linda Hanley-Bowdoin1, Emily E Wear1, Jawon Song2, Chantal LaBlanc3, Tae-Jin Lee1, Matt Vaughn2, Robert Martienssen3, George C Allen1 and William F Thompson1, (1)NC State University, Raleigh, NC, (2)Texas Advanced Computing Center, Austin, TX, (3)Cold Spring Harbor Laboratory, Cold Spring Harbor, NY W268: EPIC: the Plant Epigenome Project A Genome-Wide Epigenetic Study of Hexaploid Wheat

Laura Gardiner, Mark Quinton-Tulloch, Lisa Olohan, Jonathan Price, Neil Hall and Anthony Hall, University of Liverpool, Liverpool, United Kingdom W269: Equine 1 Genomic Signatures of Selection in the American Quarter Horse

Felipe Avila, Department of Veterinary Population Medicine, University of Minnesota, St Paul, MN W270: Equine 1 SERPINB11 Mutation Associated with Novel Hoof Specific Phenotype in Connemara Ponies

Danika Bannasch, University of California Davis, Davis, CA W271: Equine 1 Involvement of CNVs in Equine Cryptorchidism

Sharmila Ghosh, Texas A&M University, College Station, TX

W272: Equine 1 CYP7A1 is Significantly Upregulated in Spinal Cord from Horses Affected with Equine Neuroaxonal Dystrophy (NAD)

Carrie J Finno, University of California Davis, Davis, CA W273: Equine 2 Equine Genome Resources at National Center for Biotechnology Information

Shashikant Pujar1, Bhanu Rajput1, Francoise Thibaud-Nissen2, Terence D Murphy2, Paul Kitts3 and Kim D Pruitt2, (1)NCBI, National Institutes of Health, Bethesda, MD, (2)National Center for Biotechnology Information (NCBI/NLM/NIH), Bethesda, MD, (3)NIH/NLM/NCBI, Bethesda, MD W274: Equine 2 Galloping into the future: how we could create reference genomes for many horse breeds at about $30K each

David B Jaffe, Broad Institute, Cambridge, MA W275: Equine 2 Toward a high quality reference genome map of the domestic horse with whole genome physical mapping and the integration of genome sequence

Bin LIU, Ceter of Systematic Genomics, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, Xinjiang, China

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W276: Equine 2 Work Toward EquCab3: A New Reference Genome Sequence for the Domestic Horse

Theodore S Kalbfleisch, University of Louisville, Louisville, KY W277: Equine 2 Selection of Tagging SNPs and Imputation Efficiency of the 670K Commercial SNP Chip

Robert Schaefer, University of Minnesota, St Paul, MN W278: Equine 2 Update on NRSP8 Activities

James M Reecy, Department of Animal Science, Iowa State University, Ames, IA W279: Evolution of Genome Size Small RNA-Transposable Elements Interactions in Animal Genome Evolution

David A Ray1, Roy N Platt1, Federico G Hoffmann2, Michael W Vandewege2, Carl J Schmidt3 and Colin Kern3, (1)Texas Tech University, Lubbock, TX, (2)Mississippi State University, Mississippi State, MS, (3)University of Delaware, Newark, DE

W280: Evolution of Genome Size Concerted Evolution of Subgenomes in Polyploids

Andrew H Paterson1, Hui Guo2, Xiyin Wang1, Daniel G Peterson3 and Boulos Chalhoub4, (1)Plant Genome Mapping Laboratory, University of Georgia, Athens, GA, (2)University of Georgia, Athens, GA, (3)Mississippi State University, Starkville, MS, (4)URGV-INRA, Evry, France W281: Evolution of Genome Size TBD

Joshua A Udall, Brigham Young University, Provo, UT W282: Evolution of Genome Size TBD

Christopher A Saski, Clemson University Genomics Institute, Clemson, SC W283: Evolution of Genome Size Examining the Coevolution of Genome Sizes, GC contents, and Gene Direction

Xiu-Qing Li, Agriculture and Agri-Food Canada, Fredericton, NB, Canada W284: Exploring Phytobiomes Phytobiomes and Plant Health: Science and Policy

Jan E Leach, Colorado State University, Fort Collins, CO, Kellye Eversole, IWGSC, Bethesda, MD, Gwyn A Beattie, Iowa State University, Ames, IA and Angela Records, USAID, Washington, DC

W285: Exploring Phytobiomes Phytobiome, a New View of Crop Production - an Industry Perspective

Magalie Guilhabert and Varghese Thomas, Bayer CropScience, Biologics, West Sacramento, CA W286: Exploring Phytobiomes Exploring the Oomycete Microbiome Associated with Soybean Seedling Diseases in the US

Martin Chilvers and J Alejandro Rojas, Michigan State University, East Lansing, MI W287: Exploring Phytobiomes Mediation of Induced Plant Defenses by the Symbionts of Insect Herbivores

Gary Felton, Pennsylvania State University, University Park, PA W288: Exploring Phytobiomes Characterizing the Microbiome Across the Gastrointestinal Tract from Steers Differing in Feed Efficiency

Phillip Myer, James E Wells, Timothy PL Smith, Larry A Kuehn and Harvey C Freetly, USDA-ARS, US Meat Animal Research Center, Clay Center, NE W289: Exploring Phytobiomes Understanding Beneficial and Pathogenic Microorganisms Impacting Production of Forage Crops

Carolyn Young, The Samuel Roberts Noble Foundation, Ardmore, OK

W290: Flax Genomics Variation in the Flax Genome and Its Application to Bioproducts

Michael Deyholos1, Leonardo Galindo2 and David Pinzon-Latorre2, (1)University of British Columbia, Kelowna, BC, Canada, (2)University of Alberta, Edmonton, AB, Canada W291: Flax Genomics The Refined Flax Genome, Its Evolution and Applications

Frank M You1, Pingchuan Li1, Santosh Kumar2, Raja Ragupathy3, Mitali Banik1, Scott Duguid1, Helen Booker4, Michael Deyholos5, Yong-Bi Fu6, Andrew G Sharpe7 and Sylvie Cloutier8, (1)Agriculture and Agri-Food Canada, Morden, MB, Canada, (2)Agriculture and Agri-Food Canada, Brandon, MB, Canada, (3)Department of Plant Science, University of Manitoba, Winnipeg, MB, Canada, (4)University of Saskatchewan, Saskatoon, SK, Canada, (5)University of British Columbia, Kelowna, BC, Canada, (6)Agriculture and Agri-Food Canada, Saskatoon, SK, Canada, (7)National Research Council Canada, Saskatoon, SK, Canada, (8)Agriculture and Agri-Food Canada, Ottawa, ON, Canada W292: Flax Genomics The Flax Genome, a Revolution in Evolution

Christopher Cullis, Case Western Reserve University, Cleveland, OH

162

W293: Flax Genomics EMS Mutants and Functional Genomics to Dissect Cell Wall Biology in Flax

Simon W Hawkins1, Maxime Chantreau1, Wout Boerjan2, Arata Yoshinaga3, François Mesnard4 and Brigitte Chabbert5, (1)University of Lille 1, Villeneuve d'Ascq, France, (2)Department of Plant Systems Biology, VIB, Gent, Belgium, (3)Kyoto University, Kyoto, Japan, (4)Université de Picardie Jules Verne, Amiens, France, (5)INRA URCA UMR614 FARE, Reims, France W294: Flax Genomics Genome Wide Association Study (GWAS) of Yield-Related Traits in Flax

Braulio Soto-Cerda1, Scott Duguid2, Helen Booker3, Frank M You2, Gordon Rowland3 and Sylvie Cloutier4, (1)Agriaquaculture Nutritional Genomic Center (CGNA), Temuco, Chile, (2)Agriculture and Agri-Food Canada, Morden, MB, Canada, (3)University of Saskatchewan, Saskatoon, SK, Canada, (4)Agriculture and Agri-Food Canada, Ottawa, ON, Canada W295: Flax Genomics Diversity and Characters in Ethiopian Linseed Accessions

Worku Negash Mhiret,, University of Gondar, Gondar, Ethiopia and Pat Heslop-Harrison, University of Leicester, Leicester, Leic, United Kingdom

W296: Forage, Feedstocks & Turf GBS-Based Yield Selection in Alfalfa: Now We're Getting SomewhereAren't We?

E Charles Brummer1, Xuehui Li2, Yanling Wei1, Ananta Acharya3, Don Viands4, Julie Hansen4, Annie Claessens5, Réal Michaud5, Paolo Annicchiarico6 and Nelson Nazzicari6, (1)University of California, Davis, Davis, CA, (2)Samuel Roberts Noble Foundation, Ardmore, OK, (3)University of Georgia, Athens, GA, (4)Cornell Univ, Ithaca, NY, (5)Agriculture and Agri-Food Canada, Québec, QC, Canada, (6)Agricultural Research Council (CRA), Lodi, Italy W297: Forage, Feedstocks & Turf Genomic Selection in Perennial Ryegrass: Results from Empirical and Simulation Studies

Hans D Daetwyler1, Zibei Lin1, Luke Pembleton1, Hiroshi Shinozuka1, Junping Wang2, John Forster1, Ben Hayes1, German Spangenberg3 and Noel O I Cogan1, (1)Department of Environment and Primary Industries, Bundoora, Australia, (2)Department of Environment and Primary Industries, Hamilton, Australia, (3)Department of Environment and Primary Industries, Bundoora, Victoria, Australia W298: Forage, Feedstocks & Turf Understanding Tall Fescue Endophytes through Genotypic and Chemotypic Diversity

Carolyn Young, The Samuel Roberts Noble Foundation, Ardmore, OK

W299: Forage, Feedstocks & Turf Sequence-Tagged High-Density Genetic Maps of Zoysia japonica Provide New Insights into Chloridoideae Genome Evolution

Fangfang Wang, Ratnesh Singh, Dennis Genovesi, Ambika Chandra and Qingyi Yu, Texas A&M AgriLife Research, Dallas, TX W300: Forage, Feedstocks & Turf Exploration and Exploitation of Disease Resistance in Ryegrass

Roland Kölliker1, Verena Knorst1, Beat Boller1, Bruno Studer2, Torben Asp3, Stephen Byrne3 and Franco Widmer1, (1)Agroscope Institute for Sustainability Sciences, Zurich, Switzerland, (2)Swiss Federal Institute of Technology, Zuerich, Switzerland, (3)Aarhus University, Slagelse, Denmark W301: Forage, Feedstocks & Turf The Role of Fructan for Cold Stress Tolerance in Grasses

Toshihiko Yamada, Hokkaido University, Sapporo, Hokkaido, Japan W302: Forest Tree Silver Birch - a Model for Tree Genetics?

Jarkko T Salojärvi, University of Helsinki, Helsinki, Finland

W303: Forest Tree Exploiting Genome Variation to Improve Next-Generation Sequencing Data Analysis and CRISPR gRNA Design in Populus tremula x alba 717-1B4

Liang-Jiao Xue, Mohammad Mohebbi, Patrick Breen, Xi Gu, Magdy S Alabady, Scott A Harding and Chung-Jui Tsai, University of Georgia, Athens, GA W304: Forest Tree Developing Genomic Resources for Green Ash through Deep Transcriptome Sequencing and Low-Coverage Whole Genome Sequencing

Thomas Lane1, Jack Davitt1, Mark Cook1, Nate Henry1, Teodora Orendovici-Best2, Nicole Zembower2, Jennifer Koch3, Mark Coggeshall4, John E Carlson5 and Margaret Staton1, (1)University of Tennessee Institute of Agriculture, Knoxville, TN, (2)Pennsylvania State University, University Park, PA, (3)The US Forest Service, Delaware, OH, (4)University of Missouri, Columbia, MO, (5)Penn State University, University Park, PA W305: Forest Tree High-Resolution Genetic Maps of Eucalyptus Hybrids Improve E grandis Genome Assembly and Give Insight into Genes Associated with Carbon Isotope Composition

Jérôme Bartholomé1, Eric Mandrou1, André Mabiala2, Jerry Jenkins3, Oliver Brendel4, Christophe Plomion5 and Jean-Marc Gion1, (1)INRA, Cestas, France, (2)CRDPI, Pointe-Noire, Congo-Brazzaville, (3)DOE Joint Genome Institute, Huntsville, AL, (4)INRA NANCY-Lorraine, Nancy, France, (5)INRA,BIOGECO, UMR 1202, Bordeaux, France

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W306: Forest Tree Combinatorial Regulation of Gene Expression in the Vascular Cambium of Populus trichocarpa

Matthew S Zinkgraf1, Lijun Liu1, Trevor Ramsay2, Vladimir Filkov2 and Andrew Groover1, (1)US Forest Service, Davis, CA, (2)UC Davis, Davis, CA W307: Forest Tree Transcriptional and Hormonal Control of Gravitropism and Tension Wood Formation in Populus

Andrew Groover1, Suzanne Gerttula2, Matthew Zinkgraf2, Shawn D Mansfield3 and Vladimir Filkov4, (1)US Forest Service, Davis, CA, (2)USDA Forest Service, Davis, CA, (3)Department of Forestry, University of British Columbia, Vancouver, BC, Canada, (4)UC Davis, Davis, CA W308: Forest Tree Adaptation to Drought in Populus: Is Leaf Growth a Key Trait?

Hazel Katherine Smith1, Henning Wildhagen2, Maud Viger1, Billy Valdes-Fragoso1, Cyril Douthe3, David Cohen4, Oliver Brendel4, Didier Le Thiec4, Joao Paulo5, Sabine Schnabel5, Simone Scalabrin6, Federica Cattonaro6, Dennis Janz2, Susanna Pollastri7, Simon Rüger8, Mauro Centritto7, Francesco Loreto7, Joost JB Keurentjes5, Fred E van Eeuwijk5, Michele Morgante9, Jaume Flexas3, Marie-Béatrice Bogeat-Triboulot4, Andrea Polle2 and Gail Taylor1, (1)University of Southampton, Southampton, United Kingdom, (2)Georg-August-University Göttingen, Göttingen, Germany, (3)Universitat de les Illes Belears, Palma, Spain, (4)INRA NANCY-Lorraine, Nancy, France, (5)Biometris, Wageningen UR Plant Science Group, Wageningen, Netherlands, (6)IGA Technology Services, Udine, Italy, (7)Consiglio Nazionale delle Ricerche, Florence, Italy, (8)YARA ZIM Plant Technology GmbH, Hennigsdorf, Germany, (9)Università di Udine, Udine, Italy

W309: Forest Tree Identifying Genes Controlling Complex Traits in Forest Trees via Network Construction and Decomposition

Hairong Wei, Michigan Technological University, Houghton, MI W310: Forest Tree Genome-Wide Discovery of Non-Coding RNAs in Willow (Salix purpurea)

Xiaohan Yang, Hengfu Yin and Gerald A Tuskan, Oak Ridge National Laboratory, Oak Ridge, TN W311: Forest Tree TreeGenes: A Comprehensive Resource for Forest Tree Genomics

Emily Grau, UC Davis, Davis, CA, Hans Vasquez-Gross, University of California Davis, Davis, CA, John Liechty, Department of Plant Sciences, University of California, Davis, Davis, CA, Jacob Zieve, University of California, Davis, Davis, CA, Damian Gessler, University of Arizona, Santa Fe, AZ, David Neale, Dept Plant Sciences University of California, Davis, CA and Jill Wegrzyn, Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT

W312: Forest Tree The Hardwood Genomics Project: Outcomes and Future Directions after Four Years of Resource Development

Margaret Staton1, Teodora Orendovici-Best2, Nicole Zembower2, Thomas Lane1, Jack Davitt1, Tatyana Zhebentyayeva3, Mark Coggeshall4, Oliver Gailing5, Haiying Liang3, Jeanne Romero-Severson6, Christopher A Saski7, Scott Schlarbaum8, Ketia Shumaker9, Nicholas Wheeler10 and John E Carlson11, (1)University of Tennessee Institute of Agriculture, Knoxville, TN, (2)Pennsylvania State University, University Park, PA, (3)Clemson University, Clemson, SC, (4)University of Missouri, Columbia, MO, (5)Michigan Technological University, Houghton, MI, (6)University of Notre Dame, Notre Dame, IN, (7)Clemson University Genomics Institute, Clemson, SC, (8)University of Tennessee, Knoxville, TN, (9)The University of West Alabama, Livingston, AL, (10)Pennsylvania State University, Centralia, WA, (11)Penn State University, University Park, PA W313: Forest Tree The Genome of Fraxinus excelsior (European ash)

Elizabeth Sollars1, Laura J Kelly1, Bernardo Clavijo2, David Swarbreck2, Jasmin Zohren1, David Boshier3, Jo Clark4, Anika Joecker5, Sarah Ayling2, Mario Caccamo2 and Richard Buggs1, (1)Queen Mary University of London, London, United Kingdom, (2)The Genome Analysis Centre, Norwich, United Kingdom, (3)University of Oxford, Oxford, United Kingdom, (4)The Earth Trust, Abingdon, United Kingdom, (5)Qiagen Aarhus, Aarhus C, Denmark W314: Forest Tree Coupling Metabolomics, mQTL and Association Genetics Analyses to Identify Genes Regulating the Production of Metabolites

W315: Forest Tree Transcriptome Variation in Shrub Willow (Salix) Hybrids

Craig H Carlson1, Agnes P Chan2, Christopher D Town2, Vivek Krishnakumar2, Haibao Tang2, Stephen DiFazio3, Michelle Serapiglia4 and Lawrence Smart1, (1)Cornell University, Geneva, NY, (2)J Craig Venter Institute, Rockville, MD, (3)West Virginia University, Morgantown, WV, (4)USDA Sustainable Biofuels and Co-Products, Wyndmoor, PA W316: Forest Tree Improving Poplar for Biofuel Applications: Elucidating the Genetic Basis of Important Traits in Populus nigra through an Association Genetics Approach in a Natural, Wide Mapping Population

Mike Allwright1, Hazel Katherine Smith1, Giovanni Emiliani2, Adrienne Payne1, Maud Viger1, Giorgio Alberti3, Alessandro Zaldei4, Davide Scaglione5, Simone Scalabrin6, Billy Valdes-Fragoso1, Franchesca Rouse1, Joao Paulo7, Fred E van Eeuwijk7, Patricia Faivre Rampant8, Michele Morgante9 and Gail Taylor1, (1)University of Southampton, Southampton, United Kingdom, (2)CNR-IVALSA, Trees and Timber Institute, Florence, Florence, Italy, (3)Università Di Udine, Udine, Italy, (4)CNR - Institute for Biometeorology, Florence, Italy, (5)Parco Tecnologico Padano, Milan, Italy, (6)IGA Technology Services, Udine, Italy, (7)Biometris, Wageningen UR Plant Science Group, Wageningen, Netherlands, (8)INRA Evry, Evry, France, (9)Università di Udine, Udine, Italy

164

W317: Forest Tree Contrasting Genomic Signatures of Local Adaptation in Lodgepole Pine (Pinus contorta) and Interior Spruce (Picea glauca x Picea engelmannii)

Sam Yeaman1, Kathryn A Hodgins2, Katie Lotterhos3, Haktan Suren4, Tongli Wang1, Pia Smets1, Kristin Nurkowski2, Jason Holliday4, Michael C Whitlock1, Loren H Rieseberg1, Andreas Hamann5 and Sally N Aitken1, (1)University of British Columbia, Vancouver, BC, Canada, (2)Monash University, Melbourne, Australia, (3)Wake Forest University, Winston-Salem, NC, (4)Virginia Tech University, Blacksburg, VA, (5)University of Alberta, Edmonton, AB, Canada W318: Forest Tree Adaptive Gene-Environment Associations in Populus flowering Time Genes: New Insights from the Southern Range Edge of Balsam Poplar

Stephen Keller, University of Vermont, Burlington, VT W319: Forest Tree Differential Genetic Adaptation to Climate within and Between Two Picea species (P mariana and P glauca)

Benjamin Hornoy1, Nathalie Pavy1, Sébastien Gérardi1, Jean Beaulieu2 and Jean Bousquet1, (1)Université Laval, Québec, QC, Canada, (2)Canadian Wood Fibre Centre, Natural Resources Canada, Québec, QC, Canada

W320: Forest Tree Evidence That Allelic Introgression from Populus balsamifera (balsam poplar) Underlies Local Adaptation in P trichocarpa (black cottonwood)

Adriana Suarez-Gonzalez1, Camille Christe2, Armando Geraldes1, Charles A Hefer1, Christian Lexer2, Quentin C B Cronk1 and Carl Douglas1, (1)Department of Botany, University of British Columbia, Vancouver, BC, Canada, (2)University of Fribourg, Fribourg, Switzerland W321: Fruit/Nuts Welcome

Herman Silva, Lab Gen Func & Bioinfo - Fac Ciencias Agro - U de Chile, Santiago, Chile W322: Fruit/Nuts GDR: A Community Database for Rosaceae Genomics, Genetics and Breeding Research

Dorrie Main, Washington State University, Pullman, WA W323: Fruit/Nuts Coupling Gene to Function in Strawberry (Fragaria spp)

Kevin M Folta, Jeremy Pillet and Alan Chambers, University of Florida, Gainesville, FL

W324: Fruit/Nuts Combined Genetic, Genomic and Physiological Approaches to Characterize Flowering in Fragaria

Amèlia Gaston1, J Perrotte2, T Tenreira3, MN Démene4, A Potier3, Aurélie Petit5, Y Guédon6, C Godin6, Christophe Rothan1 and Béatrice Denoyes7, (1)INRA UMR, Villenave d'Ornon, France, (2)Ciref, Douville, France, (3)INRA, Villenave d’Ornon, France, (4)Invenio, Douville, France, (5)Ciref Création Variétale Fraises Fruits Rouges, Douville, France, (6)CIRAD, Montpellier, France, (7)INRA UMR 1332 - FRANCE, Villenave d'Ornon cedex, France W325: Fruit/Nuts Molecular Events Taking Place during Ripening of Fragaria chiloensis Fruit

Maria A Moya-León and Raul Herrera, Institute of Biological Sciences - University of Talca, Talca, Chile

W326: Fruit/Nuts The Peach v20 Release: An Improved Genome Sequence for Bridging the Gap Between Genomics and Breeding in Prunus

Ignazio Verde1, Shengqiang Shu2, Jerry Jenkins3, Andrea Zuccolo4, Maria Teresa Dettori1, Christopher Dardick5, Laura Rossini6, Jane Grimwood3, Raul Pirona7, David M Goodstein2, Luca Dondini8, Elisa Vendramin1, Pedro Martínez-Gómez9, Herman Silva10, Sabrina Micali1, Rachele Falchi11, Simone Scalabrin12, Daniele Bassi13, Dorrie Main14, Ariel Orellana15, Giannina Vizzotto11, Stefano Tartarini8, Lee Meisel16, Albert G Abbott17, Michele Morgante18, Daniel S Rokhsar2 and Jeremy Schmutz3, (1)Consiglio per la Ricerca e la sperimentazione in Agricoltura - Fruit Tree Research Center, Roma, Italy, (2)DOE Joint Genome Institute, Walnut Creek, CA, (3)HudsonAlpha Institute for Biotechnology, Huntsville, AL, (4)Institute of Life Sciences, Scuola Superiore Sant'Anna,, Pisa, Italy, (5)AFRS-ARS, USDA, Kearneysville, WV, (6)Parco Tecnologico Padano, Lodi, Italy, (7)Istituto di Biologia e Biotecnologia Agraria, CNR, Milano, Italy, (8)Università di Bologna, Bologna, Italy, (9)Department of Plant Breeding, CEBAS-CSIC, Espinardo, Spain, (10)Lab Gen Func & Bioinfo - Fac Ciencias Agro - U de Chile, Santiago, Chile, (11)Dipartimento di Scienze Agrarie e Ambientali Università degli Studi di Udine, Udine, Italy, (12)IGA Technology Services, Udine, Italy, (13)University of Milano, Milano, Italy, (14)Washington State University, Pullman, WA, (15)Centro de Biotecnologia Vegetal, Universidad Andres Bello, Santiago, Chile, (16)INTA - U de Chile, Macul, Chile, (17)Clemson University, Clemson, SC, (18)Università di Udine, Udine, Italy W327: Fruit/Nuts Break

Herman Silva, Lab Gen Func & Bioinfo - Fac Ciencias Agro - U de Chile, Santiago, Chile

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W328: Fruit/Nuts Refining the Genomic Region Containing a Major Locus Controlling Fruit Maturity in Peach

Hanny Elsadr, University of Guelph, Guelph, ON, Canada, Travis Banks, Vineland Research and Innovation Centre, Vineland Station, ON, Canada, Daryl J Somers, Vineland Research and Innovation Centre, Vineland, ON, Canada and Jayasankar Subramanian, University of Guelph/Vineland Station, Vineland, ON, Canada W329: Fruit/Nuts Apple Breeding and Postharvest in the Post-Genomic Era

Mario Di Guardo1, Alice Tadiello1, Nicola Busatto2, Brian Farneti2, Franco Biasioli1, Guglielmo Costa2, Riccardo Velasco1 and Fabrizio Costa1, (1)Fondazione E Mach, San Michele all'Adige, Italy, (2)University of Bologna, Bologna, Italy W330: Fruit/Nuts Development of a Saturated Linkage Map in Prunus salicina L Using Genotyping by Sequencing (GBS)

Basilio Carrasco1, Marlene Gebauer1, Carolina Klagges2 and Herman Silva2, (1)Pontificia Universidad Católica de Chile, Santiago, Chile, (2)Lab Gen Func & Bioinfo - Fac Ciencias Agro - U de Chile, Santiago, Chile

W331: Fruit/Nuts Parallel Sequencing of Barcoded BAC Clones to Assist and Validate Kiwifruit Genome Assemblies

Elena Hilario1, Marcus Davy2, Roy Storey2, Richard D Newcomb1, Ross N Crowhurst1 and Roger P Hellens3, (1)The New Zealand Institute for Plant & Food Research Limited, Auckland, New Zealand, (2)The New Zealand Institute for Plant & Food Research Limited, Te Puke, New Zealand, (3)Queensland University of Technology, Brisbane, Australia W332: Fruit/Nuts The Genome Sequence of Walnut (Juglans regia L) cv “Chandler”

Pedro J Martínez-García1, Marc Crepeau2, Daniela Puiu3, Daniel Gonzalez-Ibeas4, Kristian Stevens2, Jeanne Whalen4, Tim Butterfield5, Russell Reagan5, Monica T Britton6, Randi Famula7, Charis Cardeno8, Mallikarjuna Aradhya9, Charles Leslie5, Abhaya Dandekar10, Steven L Salzberg3, Jill Wegrzyn11, Charles H Langley2 and David Neale7, (1)Department of Plant Sciences University of California, Davis, CA, (2)Department of Evolution and Ecology, University of California, Davis, Davis, CA, (3)Johns Hopkins University, School of Medicine, Baltimore, MD, (4)Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, (5)UCDAVIS, DAVIS, CA, (6)UC Davis Genome Center, Davis, CA, (7)Dept Plant Sciences University of California, Davis, CA, (8)University of California, Davis, Davis, CA, (9)USDA National Clonal Germplasm Repository, Davis, CA, (10)University of California Davis, Davis, CA, (11)University of Connecticut, Storrs, CT W333: Fruit/Nuts Sexuality of Persimmons

Kei Kajita, Takashi Akagi, Hisayo Yamane and Ryutaro Tao, Graduate School of Agriculture, Kyoto University, Kyoto, Japan

W334: Fruit/Nuts Genomic Studies on a Highly Complex Trait in Sweet Cherry: Tolerance to Rain-Induced Fruit Cracking

José Quero-Garcia1, José A Campoy Corbalán2, Guillaumme Lalanne-Tisné1, Jacques Joly1, Yves Gibon1, Marc Lahaye3, Sophie Le Gall3, Francisco Robledo4, Herman Silva4 and Elisabeth Dirlewanger5, (1)INRA, UMR 1332 Biologie du Fruit et Pathologie, Villenave d'Ornon, France, (2)INRA, UMR 1332 de Biologie du Fruit et Pathologie, Villenave d’Ornon, France, (3)INRA BIA, Nantes, France, (4)Lab Gen Func & Bioinfo - Fac Ciencias Agro - U de Chile, Santiago, Chile, (5)INRA, UMR 1332 Biologie du Fruit et Pathologie, Villenave d’Ornon, France W335: Fruit/Nuts RosBREED: Combining Disease Resistance with Horticultural Quality in New Rosaceous Cultivars

Amy Iezzoni1, Cameron Peace2, Nahla Bassil3, Michael Coe4, Chad Finn5, Ksenija Gasic6, James J Luby7, Dorrie Main2, Jim McFerson8, John L Norelli9, Mercy Olmstead10, Vance M Whitaker11 and Chengyan Yue7, (1)Michigan State University, East Lansing, MI, (2)Washington State University, Pullman, WA, (3)USDA/ARS, NCGR, Corvallis, OR, (4)Cedar Lake Research Group, Portland, OR, (5)USDA-ARS, Horticultural Crops Research Lab, Corvallis, OR, (6)Clemson University, Clemson, SC, (7)University of Minnesota, St Paul, MN, (8)Washington Tree Fruit Research Commission, Wenatchee, WA, (9)USDA-ARS, Kearneysville, WV, (10)University of Florida, Gainesville, FL, (11)University of Florida, Wimauma, FL W336: Functional Genomics Nitrate Responsive Transcription in Maize Is Highly Dynamic Across the Lifecycle

Trevor Paul Garnett, The University of Adelaide, Glen Osmond, Australia

W337: Functional Genomics Mapping Complex Traits in Plants: Nitrogen Use Efficiency in Barley As a Case Study

Allen Good, University of Alberta, Edmonton, AB, Canada W338: Functional Genomics NUE in Maize

Stephen P Moose, University of Illinois Urbana-Champaign, Urbana, IL W339: Functional Genomics The Response of Maize to N Supply and Demand is Highly Dynamic Across the Lifecycle

Trevor Garnett, University of Adelaide, Glen Osmond, Australia W340: Functional Genomics Regulation of Amino Acid Metabolism in Tomato Seeds

Aaron Fait, Ben-Gurion University, Midreshet Ben Gurion, Israel, David Toubiana, Ben Gurion University, Sede Boqer, Israel and Albert Batushansky, Ben-Gurion University, Midreshet Ben-Gurion, Israel W341: Functional Genomics Nitrate Foraging By Arabidopsis Root Is Mediated By the Transcription Factor TCP20 through the Systemic Signaling Pathway (from DNA cis-Elements to Nitrate Regulatory Network)

Peizhu Guan, UCSD, La Jolla, CA

166

W342: Functional Genomics of C4 and CAM photosynthesis Evolution of C4 Photosynthesis: The Role of Low CO2 Environment

Xinguang Zhu, CAS-MPG Partner Institute for Computational Biology,Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China W343: Functional Genomics of C4 and CAM photosynthesis Metabolic Transport Functions in C4 Photosynthesis

Andreas PM Weber, Heinrich Heine Universität Düsseldorf, Düsseldorf, Germany W344: Functional Genomics of C4 and CAM photosynthesis A Comparative Genomics Approach to Understanding C4 Photosynthetic Differentiation in the Grasses

Thomas P Brutnell, Donald Danforth Plant Science Center, St Louis, MO W345: Functional Genomics of C4 and CAM photosynthesis Genome Assembly of the Obligate Crassulacean Acid Metabolism (CAM) Species Kalanchoe laxiflora

Jerry Jenkins, DOE Joint Genome Institute, Huntsville, AL W346: Functional Genomics of C4 and CAM photosynthesis Proteomic Studies in Monocot and Eudicot Crassulacean Acid Metabolism (CAM) Species

Paul E Abraham, BioEnergy Science Center, Oak Ridge National Laboratory, Oak Ridge, TN

W347: Functional Genomics of C4 and CAM photosynthesis Transcriptome and Genome Assemblies of the Common Ice Plant, a Halophytic, Facultative Crassulacean Acid Metabolism (CAM) Species

Won Cheol Yim1, Richard L Tillett2, Bahay G Bilgi1, Karen A Schlauch2, Rebecca L Albion1, Samuel M D Seaver3, Hengfu Yin4, Xiaohan Yang4 and John C Cushman1, (1)Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Reno, NV, (2)Nevada Center for Bioinformatics, University of Nevada, Reno, Reno, NV, (3)Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL, (4)Oak Ridge National Laboratory, Oak Ridge, TN W348: Fungal Genomics Comparative Genomics of Phytophthora rubi and P fragariae

Niklaus Grunwald, USDA-ARS, Corvallis, OR W349: Fungal Genomics Regulatory Networks Associated with Plant Cell Wall Deconstruction by Fungi

N Louise Glass, University of California, Berkeley, CA W350: Fungal Genomics Fungal SM Genome Biology: How to Translate Whole Genome Sequence Information into the Secondary Metabolome in Filamentous Fungi?

Cheng-Cang Charles Wu1, Jin Woo Bok2, Jessica C Albright3, Rosa Ye4, Anthony W Anthony W Goering3, Neil L Kelleher3 and Nancy P Keller2, (1)Intact Genomics, Inc, St Louis, MO, (2)University of Wisconsin at Madison, Madison, WI, (3)Northwestern University, Evanston, IL, (4)Intact Genomics, Inc, St Louis, MO

W351: Fungal Genomics Cronartium Comparative Genomics: Understanding the Canker Causing Basidiomycete Genomes

Braham Dhillon, Nicolas Feau and Richard Hamelin, University of British Columbia, Vancouver, BC, Canada W352: Fungal Genomics Wheat Expression Differences Induced by Six Puccinia triticina Races

Kerri Neugebauer1, Myron Bruce2, Harold N Trick1 and John Fellers3, (1)Kansas State University, Manhattan, KS, (2)USDA-ARS-HWWGRU, Manhattan, KS, (3)USDA ARS, Manhattan, KS W353: Fungal Genomics A Unique Set of Supernumerary Chromosomes in the Genome of Fusarium oxysporum NRRL32931 Contributes to its Pathogenicity

Li-Jun Ma, University of Massachusetts Amherst, Amherst, MA W354: Galaxy for SNP and Variant Data Analysis Galaxy for SNP and Variant Data Analysis

Dave Clements, Johns Hopkins University, Eugene, OR W355: Gene Expression Analysis TBA

Rodrigo A Gutierrez, Pontificia Universidad Católica de Chile, Santiago, Chile

W356: Gene Expression Analysis Understanding Gene Expression Responses to the Environment in Tomato Roots at the Cell Type and Tissue-Specific Level

Sharon B Gray1, Kaisa Kajala1, Mily Ron1, Kristina Zumstein1, Germain Pauluzzi2, Mauricio A Reynoso2, Roger B Deal3, Julia Bailey-Serres2, Neelima R Sinha1 and Siobhan Brady1, (1)University of California, Davis, Davis, CA, (2)University of California, Riverside, Riverside, CA, (3)Emory University, Atlanta, GA W357: Gene Expression Analysis RoDEO: Non-Parametric Robust Differential Expression Operator

Niina Haiminen1, Zeyu Zhou2, Manfred Klaas3, Filippo Utro1, Susanne Barth4 and Laxmi Parida1, (1)IBM T J Watson Research - Computational Biology Center, Yorktown Heights, NY, (2)IBM Research, Carlton, Australia, (3)Teagasc Crops Environment and Land Use Programme, Carlow, Ireland, (4)Teagasc, Carlow, Ireland W358: Gene Expression Analysis Networks Regulating Hormone-Mediated Plant Growth

Mathew G Lewsey1, Liang Song1, S Carol Huang1, Mark Zander1, Mingtang Xie1, Aaron Wise2, Matthew T Weirauch3, Timothy R Hughes4, Ziv Bar-Joseph2 and Joseph Ecker5, (1)Salk Institute for Biological Studies, La Jolla, CA, (2)Carnegie Mellon University, Pittsburgh, PA, (3)Cincinnati Children's Hospital, Cincinnati, OH, (4)University of Toronto, Toronto, ON, Canada, (5)Salk Institute for Biological Studies & Howard Hughes Medical Institute, La Jolla, CA

167

W359: Gene Expression Analysis Identification of Novel Flavonoid-Pathway Regulatory Genes using Transcriptome Correlation Network Analysis in Ripe Strawberry (Fragaria x ananassa) Fruit

Jeremy Pillet1, Haowei Yu1, Alan Chambers1, Vance M Whitaker2 and Kevin M Folta1, (1)University of Florida, Gainesville, FL, (2)University of Florida, Wimauma, FL W360: Gene Expression Analysis Full-length, Single Molecule, Whole Transcriptome cDNA Sequencing of the European Cuttlefish

Tyson A Clark1, Yi Han2, Jeffrey Rogers2, Kim C Worley2, Min Wang2, Nathan Tublitz3, Graziano Fiorito4, Ting Hon1, Cheryl Heiner1, Elizabeth Tseng1, Muthuswamy Raveendran2, Vanessa Vee2, Donna M Muzny2 and Richard A Gibbs2, (1)Pacific Biosciences, Menlo Park, CA, (2)Baylor College of Medicine, Houston, TX, (3)University of Oregon, Eugene, OR, (4)Stazione Zoologica Anton Dohrn, Napoli, Italy W361: Gene Introgression Introgression of Useful Agronomic Traits from Barley into Wheat

Marta Molnar-Lang, Agricultural Institute, Centre for Agricultural Research, Hungarian Academy of Sciences,, Martonvasar, Hungary W362: Gene Introgression A Tale of Two Accessions: Rapid Curation of Germplasm Collections Using Genotyping-by-Sequencing

Jesse Poland, Kansas State University, Manhattan, KS

W363: Gene Introgression Hordeum bulbosum - Genetic Resources for Barley Crop Improvement Revisited

Nils Stein, Neele Wendler, Axel Himmelbach and Martin Mascher, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Stadt Seeland, Germany W364: Gene Introgression Introgression of Wild Alleles for Improving Abiotic Stress Resistance in Crop Plants

Yehoshua Saranga, R H Smith Institute of Plant Science & Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel W365: Gene Introgression Targeted Introgression of Stem Rust Ug99 Resistance from Wheatgrasses into Pasta and Bread Wheat

Steven S Xu1, Timothy L Friesen1, Shiaoman Chao1, Yue Jin2, Matthew N Rouse2, Justin D Faris1 and Xiwen Cai3, (1)USDA-ARS, Fargo, ND, (2)USDA-ARS, University of Minnesota, St Paul, MN, (3)North Dakota State University, Fargo, ND W366: Gene Introgression High Resistant Genes of Leaf Rust and Fusarium Transferred to Wheat from Thinopyrum intermedium and Th elongatum

Xiang Guo1, Jing Wang2, Qinghua Shi2, Yanlin Hou2 and Fangpu Han3, (1)Institute of Genetics and Developmental Biology, Beijing, China, (2)Institute of Genetics and Developmental Biology, beijing, China, (3)Chinese Academy of Sciences, Beijing, China

W367: Generic Genome Browser JBrowse Installation and Configuration

Scott Cain, Ontario Institute for Cancer Research, MEDINA, OH W368: Genome annotation resources at the EBI Intro

Sandra Orchard, EMBL-EBI, Hinxton, United Kingdom W369: Genome annotation resources at the EBI Browsing Genes and Genomes with Ensembl and Ensembl Genomes

Emily Perry, European Bioinformatics Institute (EMBL-EBI), Hinxton, United Kingdom W370: Genome annotation resources at the EBI New Variation Archive at EMBL-EBI: European Variation Archive

Gary Saunders, European Bioinformatics Institute (EMBL-EBI), Hinxton, United Kingdom W371: Genome annotation resources at the EBI Manual Genome Annotation and Vega

Toby Hunt, Jane Loveland and Jennifer Harrow, Wellcome Trust Sanger Institute, Cambridge, United Kingdom

W372: Genome annotation resources at the EBI Functional Genomics Resources at EBI: ArrayExpress and Expression Atlas

Maria Keays, European Bioinformatics Institute (EMBL-EBI), Hinxton, United Kingdom W373: Genome annotation resources at the EBI Manual and Automatic Annotation of Plants and Animals in the UniProt Knowledgebase and the Gene Ontology

Claire O'Donovan, European Bioinformatics Institute (EMBL-EBI), Hinxton, United Kingdom W374: Genome annotation resources at the EBI Metabolomics and Small Molecule Resources at the EBI

Sandra Orchard, EMBL-EBI, Hinxton, United Kingdom W375: Genome annotation resources at the EBI Training in Data, Tools and Resources for Life Scientists

Katrina Costa, EMBL-EBI, Cambridge, United Kingdom W376: Genome annotation resources at the EBI Introducing the EMBL-EBI Industry Program

Dominic Clark, EMBL-EBI, Cambridge, United Kingdom

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W377: Genome management and analysis with CoGe Genome Analysis with CoGe

Haibao Tang, J Craig Venter Institute, Rockville, MD W378: Genomics-Assisted Breeding Welcome & Introduction

Rajeev K Varshney, ICRISAT, Greater Hyderabad, India W379: Genomics-Assisted Breeding High Throughput SNP Discovery and Genotyping in Hexaploid Wheat

Etienne Paux, INRA GDEC, Clermont-Ferrand, France W380: Genomics-Assisted Breeding The Influenza Paradigm for Resistance Gene Deployment in Lettuce

Richard Michelmore1, Marilena Christopoulou1, Leah McHale2, Lorena Parra3, Alexander Kozik4, Sebastian Reyes Chin-Wo1, Rosa Juliana Gil1, Cayla Tsuchida5, Maria Jose Truco1 and Dean Lavelle1, (1)Genome Center, University of California, Davis, CA, (2)The Ohio State University, Columbus, OH, (3)University of California, Davis, CA, (4)UC Davis Genome Center, Davis, CA, (5)University of California, Davis, Davis, CA W381: Genomics-Assisted Breeding Genetic Dissection of Biomass Development in Barley

Andreas Graner, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany

W382: Genomics-Assisted Breeding Identification and Cross-Validation of Trait-Associated SNPs Provide Insights into Heterosis

Patrick S Schnable, Department of Agronomy, Iowa State University, Ames, IA W383: Genomics-Assisted Breeding Heuristic Exploitation of Genetic Structure in Marker-Assisted Gene Pyramiding Problems

Herman De Beukelaer1, Geert De Meyer2 and Veerle Fack1, (1)Ghent University, Ghent, Belgium, (2)Bayer CropScience NV, Diegem, Belgium W384: Genomics-Assisted Breeding Novel Strategies in Integrating Genomic Selection into the Broad Genomics-Assisted Breeding Framework

Jianming Yu, Department of Agronomy, Iowa State University, Ames, IA W385: Genomics-Assisted Breeding Summary & Wrap-up

Rajeev K Varshney, ICRISAT, Greater Hyderabad, India W386: Genomic Selection and Genome-Wide Association Studies Predicting Yield of Hybrid Rice Using Omics Data

Shizhong Xu, University of California, Riverside, CA and Qifa Zhang, Huazhong Agricultural University, Wuhan, China

W387: Genomic Selection and Genome-Wide Association Studies Advances on Bos indicus (Nellore) Genomics: Integrating Genomic Selection and GWAS Information

Jose Fernando Garcia, Sao Paulo State University / UNESP, Sao Paulo, Brazil, Yuri Tani Utsunomiya, Faculdade de Ciências Agrárias e Veterinárias, UNESP - Univ Estadual Paulista, Araçatuba, Brazil, Paolo Ajmone Marsan, Inst of Zootechnics, Università Cattolica del S Cuore, Piacenza, Italy, Tad S Sonstegard, Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD and The Zebu Genome Consortium, The Zebu Genome Consortium, AL W388: Genomic Selection and Genome-Wide Association Studies Selection Mapping: A Powerful Tool for Population Improvement

Tim Beissinger, University of California Davis, Davis, CA W389: Genomic Selection and Genome-Wide Association Studies New Developments in Plant Genomic Prediction Models

Jose Crossa, CIMMYT, Mexico city, Mexico, Gustavo de los Campos, University of Alabama, Birmingham, AL, Paulino Perez-Rodriguez, Colegio de Postgraduado, Texcoco, Mexico, Sergio Perez-Elizalde, Colegio de Post-Graduado, Texcoco, Mexico, Osval A Montesinos-Lopez, Universidad de Colima, Colima, Mexico, Jaime Cuevas, Universidad de Quintana Ro, Chetumal, Mexico, Marco Lopez-Cruz, CIMMYT INT, Mexico DF, Mexico and Daniel Gianola, Department of Biostatistics and Medical Informatics, University of Wisconsin - Madison, Madison, WI

W390: Genomic Selection and Genome-Wide Association Studies Genomic Selection in New Zealand Sheep Using a Mixed-breed Training Set

Ken Dodds1, Benoît Auvray2, Michael A Lee2, Sheryl-Anne N Newman1, Suzanne Rowe1, Patricia L Johnson1, Shannon Clarke1, Ricardo Ventura3, Matthew J Bixley1 and John McEwan1, (1)Invermay Agricultural Centre, AgResearch Ltd, Mosgiel, New Zealand, (2)Department of Mathematics and Statistics, University of Otago, Dunedin, New Zealand, (3)Beef Improvement Opportunities, Guelph, ON, Canada W391: Genomics of Genebanks Overview of the Workshop

Christopher M Richards, USDA-ARS, FT COLLINS, CO W392: Genomics of Genebanks The Complex Tale of the High Oleic Acid Trait in Peanut (Arachis hypogaea L)

Noelle A Barkley1, Claire Klevorn2, Keith Hendrix3 and Lisa Dean3, (1)USDA-ARS, PGRCU, Griffin, GA, (2)NC State University, Raleigh, NC, (3)USDA ARS Market Quality and Handling Research, Raleigh, NC

169

W393: Genomics of Genebanks A Genome-Wide Association Study of Resistance to Stripe Rust (Puccinia striiformis f sp tritici) in a Worldwide Collection

Marco Maccaferri1, Junli Zhang2, Peter Bulli3, Zewdie A Abate4, Shiaoman Chao5, Dario Cantu2, Eligio Bossolini6, Xianming Chen7, Michael Pumphrey3 and Jorge Dubcovsky2, (1)DipSA - University of Bologna, Bologna, Italy, (2)University of California Davis, Davis, CA, (3)Washington State University, Pullman, WA, (4)MONSANTO, Yuma, AZ, (5)USDA-ARS, Fargo, ND, (6)Bayer CropScience, Gent, Belgium, (7)USDA-ARS, Pullman, WA W394: Genomics of Genebanks Genomics of Wild Cicer of Turkey

Eric J von Wettberg1, Jens D Berger2, Bekir Bukun3, Abdullah Kahraman4, Abdulkadir AydoÄŸan5, Alex Greenspan6, Emily Warschefsky1, Yadira Reynaldo1, Emmanuel Dacosta-Calheiros1, Peter Chang7, Sergey V Nuzhdin7, R Varma Penmetsa8 and Douglas R Cook9, (1)Florida International University, Miami, FL, (2)Plant Industry, CSIRO, Floreat, WA, Australia, (3)Dicle University, Diyarbakir, Turkey, (4)Harran University, Urfa, AZ, Turkey, (5)Turkish Ministry of Agriculture, Ankara, Turkey, (6)University of California, Davis, CA, (7)University of Southern California, Los Angeles, CA, (8)University of California Davis, Davis, CA, (9)University of California at Davis, Davis, CA W395: Genomics of Genebanks Diversity Seek (DivSeek): Towards A Concerted Effort To Harness The Genetic Potential Of The World’s Genebanks

Peter Wenzl1, Ruth Bastow2, Hannes Dempewolf1, Daniele Manzella3, Francisco Lopez3 and Wayne Powell4, (1)Global Crop Diversity Trust, Bonn, Germany, (2)Global Plant Council, London, United Kingdom, (3)FAO, Rome, Italy, (4)CGIAR Consortium Office, Montpellier, France

W396: Genomics of Non-Classical Model Animals Genomics of Nematode Parasites of Pigs, Sheep, and Other Animals: Towards Understanding Human Immune Modulation

Paul W Sternberg, Division of Biology and Biological Engineering, Caltech, Pasadena, USA, Pasadena, CA W397: Genomics of Non-Classical Model Animals The Tale of Whales Genomics in Aquatic Adaptation - Might It be Associated with Human Disease?

Jong Bhak, UNIST, Ulsan, South Korea W398: Genomics of Non-Classical Model Animals Polar Bears Genomics and Its Association with Cardiomyopathy and Vascular Disease

Rasmus Nielsen, Department of Integrative Biology and Statistics, Berkeley, CA W399: Genomics of Non-Classical Model Animals Derived Immune and Ancestral Pigmentation Alleles in a 7,000-Year-Old European Hunter-Gatherer

Morten E Allentoft, Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark

W400: Genomics of Non-Classical Model Animals Adaptation to High Altitude: Does It Teach Us about the Pathobiology of Hypoxia at Sea Level?

Gabriel Haddad, University of California, San Diego, San Diego, CA W401: Genomics of Plant Development Transcription Start Site Sequencing Strongly Informs Gene Regulatory Network Inference

Molly Megraw, Oregon State University, Corvallis, OR W402: Genomics of Plant Development Understanding Disease Resistance Signaling in Common Bean (Phaseolus vulgaris L) through Integrated Epigenomic and Transcriptomic Analyses

Venu (Kal) Kalavacharla, Delaware State University, Dover, DE W403: Genomics of Plant Development The Search for Functional Structural Variants and Adaptive Traits in Soybean

Justin E Anderson1, Michael B Kantar1, Thomas J Y Kono2, Fengli Fu2, Adrian O Stec3, Steven B Cannon4, Leah McHale5 and Robert M Stupar2, (1)University of Minnesota, St Paul, MN, (2)Department of Agronomy and Plant Genetics, University of Minnesota, St Paul, MN, (3)University of Minnesota, Saint Paul, MN, (4)USDA-ARS-CICGRU, Ames, IA, (5)The Ohio State University, Columbus, OH

W404: Genomics of Plant Development Inflorescence Architecture in Grasses: Regulatory Networks and Translational Genomics

Andrea L Eveland, Donald Danforth Plant Science Center, St Louis, MO W405: Genomics of Plant Development Four New Soybean Sources Carrying Novel SACPD-C Alleles Containing High Level of Seed Stearic Acid and Conferring Resistance to Soybean Cyst Nematode

Naoufal Lakhssassi, Department of Plant Soil and Agricultural Systems, SIUC, Carbondale, IL W406: Genomics of Plant Development Mutation Breeding in Crops and Translational Development Research

Abdelhafid Bendahmane, INRA, Evry, France; INRA-URGV, Evry, France W407: GMOD The Future of GMOD and Chado

Scott Cain, Ontario Institute for Cancer Research, MEDINA, OH W408: GMOD KnowPulse: A Breeder-Focused Web Portal That Integrates Genetics and Genomics of Pulse Crops with Model Genomes

Lacey-Anne Sanderson, Albert Vandenberg, Bunyamin Taran, Tom Warkentin and Kirstin Bett, University of Saskatchewan, Saskatoon, SK, Canada

170

W409: GMOD Phytozome Population Diversity Visualization in JBrowse: A very large Dataset Case Study

Richard D Hayes, Jeremy L Phillips, Joseph W Carlson, David M Goodstein and Daniel S Rokhsar, DOE Joint Genome Institute, Walnut Creek, CA W410: GMOD JBrowse within the Arabidopsis Information Portal (AIP) Project

Maria Kim, Vivek Krishnakumar, Benjamin D Rosen, Chia-Yi Cheng, Erik Ferlanti, Jason R Miller and Christopher D Town, J Craig Venter Institute, Rockville, MD W411: GMOD Apollo + i5K: Collaborative Curation and Interactive Analysis of Genomes

Monica C Munoz-Torres1, Nathan A Dunn1, Monica Poelchau2, Colin Diesh3, Deepak Unni3, Ian Holmes4, Christine G Elsik3 and Suzanna Lewis1, (1)Lawrence Berkeley National Laboratory, Walnut Creek, CA, (2)USDA/Agricultural Resarch Service/National Agricultural Library, Beltsville, MD, (3)Division of Animal Sciences, University of Missouri, Columbia, MO, (4)Department of Bioengineering, Berkeley, CA W412: GMOD The Teosinte (Zea mays ssp parviglumis) de novo Genome Assembly

Arun S Seetharam, Iowa State University, Ames, IA

W413: Gramene Project Browsing and Comparing Genomes Using the Gramene/Ensembl Plants Browser

Joshua Stein, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY W414: Gramene Project Programmatic Interfaces to Plant Genomic Data

Paul J Kersey, EMBL - The European Bioinformatics Institute, Cambridge, United Kingdom W415: Gramene Project Plant Reactome: A Resource for Plant Metabolic and Regulatory Pathways

Justin Preece, Dept of Botany & Plant Pathology, Oregon State University, Corvallis, OR W416: Gramene Project Expression Atlas - a New Resource for Baseline and Differential Gene Expression for Crop Plants

Robert Petryszak, EMBL - The European Bioinformatics Institute, Hinxton, United Kingdom

W417: Gramene Project Hands-on Session: Upload, Display and Analyze Your Data on the Gramene/Ensembl Genome Browser

Sushma Naithani, Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR W418: Grape Genome Initiative A Pathogenomic Approach to Decipher the Molecular Mechanisms Underlying Grapevine Diseases

Dario Cantu1, Abraham Morales-Cruz1, Laura Jones1, Barbara Blanco-Ulate1, Katherine CH Amrine1, Summaira Riaz1, Andrew Walker1, Philippe E Rolshausen2 and Kendra Baumgartner3, (1)University of California Davis, Davis, CA, (2)University of California Riverside, Davis, CA, (3)USDA-ARS, Davis, CA W419: Grape Genome Initiative An Update on VitisGen: Recent Advances in Using DNA Marker Technologies in US Grape Breeding Programs

Lance Cadle-Davidson1, Bruce Reisch2, Qi Sun3, Peter Schweitzer4, Gavin Sacks4, Jason Londo1, Craig A Ledbetter5, James J Luby6, Peter Hemstad6, Adrian Hegeman6, SLT Teh6, David Manns2, Paola Barba2, Katie Hyma4, Jacquelyn Lillis1, Jonathan Fresnedo Ramirez4, Shanshan Yang2 and Elizabeth M Takacs2, (1)USDA-ARS Grape Genetics Research Unit, Geneva, NY, (2)Cornell University, Geneva, NY, (3)Institute for Genomic Diversity, Cornell University, Ithaca, NY, (4)Cornell University, Ithaca, NY, (5)Crop Diseases, Pests and Genetics Research Unit, USDA-ARS, Parlier, CA, (6)University of Minnesota, St Paul, MN

W420: Grape Genome Initiative Comparative Transcriptomics of Two Grapevine Species

Allison Miller, Saint Louis University, Saint Louis, MO W421: Grape Genome Initiative Overview of the GnpIS Grape Genomics and Genetic Integrative Resource for Diversity Studies

Nacer Mohellibi1, Nathalie Choisne1, Aminah Keliet1, Daphné Verdelet1, Françoise Alfama1, Guillaume Merceron2, Célia Michotey2, Amandine Launay3, Thomas Letellier1, Raphael Flores1, Erik Kimmel1, Michael Alaux1, Cyril Pommier1, Sophie Durand1, Delphine Steinbach1, Hadi Quesneville1 and Anne-Francoise Adam-Blondon4, (1)INRA - URGI, Versailles, France, (2)INRA URGI, Versailles, France, (3)INRA, Montpellier, France, (4)INRA, VERSAILLES, France W422: Grape Genome Initiative The Hunt for Adaptive Variation in Wild Grapevine; Sequencing, Assembly, and Annotation of North American Vitis Reference Transcriptomes

Jason Londo, Jacquelyn Lillis and Kathleen Deys, USDA-ARS Grape Genetics Research Unit, Geneva, NY W423: Grape Genome Initiative ABA Signaling in Grapevine

Supakan Rattanakon, University of Nevada, Reno, Reno, NV

171

W424: Grass Genome Initiative (IGGI) Structure and Function of Ph1 Genes in Wheat and Other Cereals

Kulvinder Gill, Washington State University, Pullman, WA W425: Grass Genome Initiative (IGGI) A Reference Genome and HapMap for Pearl Millet (Pennisetum glaucum)

Rajeev K Varshney, ICRISAT, Greater Hyderabad, India W426: Grass Genome Initiative (IGGI) Transposable Element Histories Across a Broad Sampling of Panicoid Grasses

Jeffrey L Bennetzen1, Minkyu Park1, Oriane Hidalgo2, Ilia J Leitch2 and P a Christin3, (1)University of Georgia, Athens, GA, (2)Jodrell Laboratory, Richmond, United Kingdom, (3)Department of Animal and Plant Sciences Sheffield University, Sheffield, United Kingdom W427: Grass Genome Initiative (IGGI) Exploring an Annotated Sequence Assembly of the Perennial Ryegrass Genome for Genomic Regions Enriched for Trait Associated Variants

Stephen Byrne1, Fabio Cericola2, Luc L Janss3, Just Jensen2, Dario Fè2, Bilal H Ashraf2, Adrian Czaban1, Morten Greve-Pedersen4, Ingo Lenk5, Christian Sig Jensen6 and Torben Asp1, (1)Molecular Biology and Genetics, Aarhus University, Slagelse, Denmark, (2)Molecular Biology and Genetics, Aarhus University, Tjele, Denmark, (3)Aarhus University, Aarhus, Denmark, (4)DLF-Trifolium, St Heddinge, Roskilde, Denmark, (5)DLF-Trifolium, St Heddinge, Denmark, Store Heddinge, Denmark, (6)DLF Trifolium, Store Heddinge, Denmark

W428: Grass Genome Initiative (IGGI) Co-Occurrence of Long-Lasting Retrotransposon Activity and Lack of Symmetric CG Methylation in the Genome of Arabis alpina

Korbinian Schneeberger, Max Planck Institute for Plant Breeding Research, Cologne, Germany W429: Grasslands (Lolium Genome Initiative) Genetic Improvement of Switchgrass: The Brave New World of Genomic Selection

Michael Casler, USDA-ARS, Madison, WI and Guillaume P Ramstein, University of Wisconsin-Madison, Madison, WI W430: Grasslands (Lolium Genome Initiative) Machine Learning for Genomic Prediction in Lolium perenne

Leif Skot1, Nastasiya F Grinberg2, Alan Lovatt3, Andrea Macfarlane4, Matthew Hegarty3, Kirsten P Skot4, Ian Armstead3, Ross D King2 and Wayne Powell5, (1)IBERS, Ceredigion, United Kingdom, (2)Manchester Institute of Biotechnology - University of Manchester, Manchester, United Kingdom, (3)IBERS, Aberystwyth University, Aberystwyth, United Kingdom, (4)IBERS - Aberystwyth University, Aberystwyth, United Kingdom, (5)CGIAR Consortium Office, Montpellier, France

W431: Grasslands (Lolium Genome Initiative) Probing Genome Diversity in Natural and Breeding Populations of Lolium perenne

Tom Ruttink1, Elisabeth Veeckman2, Annelies Haegeman1, Frederik van Parijs1, Sabine Van Glabeke1, Hilde Muylle1, Klaas Vandepoele3, Stephen Byrne4, Torben Asp5 and Isabel Roldan-Ruiz1, (1)ILVO-Plant Sciences Unit-Growth and Development, Melle, Belgium, (2)ILVO-Plant Sciences Unit-Growth and Development, Melle, Belgium, (3)VIB Department of Plant Systems Biology, Ghent University, Ghent, Belgium, (4)Aarhus University, Slagelse, Denmark, (5)Molecular Biology and Genetics, Aarhus University, Slagelse, Denmark W432: Grasslands (Lolium Genome Initiative) Comparative Genome Analysis of Lolium-Festuca Complex Species

Adrian Czaban1, Stephen Byrne1, Sapna Sharma2, Manuel Spannagl2, Istvan Nagy1, Matthias Pfeifer2, Heidrun Gundlach2, Klaus FX Mayer3 and Torben Asp1, (1)Aarhus University, Slagelse, Denmark, (2)Institute of Bioinformatics & Systems Biology, MIPS, Neuherberg, Germany, (3)Plant Genome and Systems Biology, Helmholtz Center Munich, Neuherberg, Germany

W433: Grasslands (Lolium Genome Initiative) Genomic Prediction in a Breeding Program of Perennial Ryegrass

Dario Fè1, Bilal H Ashraf1, Morten Greve-Pedersen2, Niels Roulund3, Fabio Cericola1, Ingo Lenk4, Thomas Didion5, Adrian Czaban6, Stephen Byrne7, Luc L Janss8, Torben Asp6, Christian Sig Jensen9 and Just Jensen1, (1)Molecular Biology and Genetics, Aarhus University, Tjele, Denmark, (2)DLF-Trifolium, St Heddinge, Roskilde, Denmark, (3)DLF-Trifolium, St Heddinge, Denmark, Roskilde, Denmark, (4)DLF-Trifolium, St Heddinge, Denmark, Store Heddinge, Denmark, (5)DLF-Trifolium, St Heddinge, Denmark, St Heddinge, Denmark, (6)Molecular Biology and Genetics, Aarhus University, Slagelse, Denmark, (7)Aarhus University, Slagelse, Denmark, (8)Aarhus University, Aarhus, Denmark, (9)DLF Trifolium, Store Heddinge, Denmark W434: Grasslands (Lolium Genome Initiative) Uncovering the Water Stress Response of Reed Canary Grass (Phalaris arundinacea) from Differential Expression of the Reference Transcriptome

Manfred Klaas1, Niina Haiminen2, Filippo Utro2, Tia Vellani1, Paul Cormican3, Poul E Laerke4, Uffe Jørgensen4, Laxmi Parida2 and Susanne Barth1, (1)Teagasc Crops Environment and Land Use Programme, Carlow, Ireland, (2)IBM T J Watson Research - Computational Biology Center, Yorktown Heights, NY, (3)Teagasc Animal and Bioscience Research Department, Dunsany, Ireland, (4)Dept of Agroecology, Aarhus University, Tjele, Denmark W435: Host-Microbe Interactions Genomic Plasticity and the Adaptation of Pathogenic Fungi

Li-Jun Ma, University of Massachusetts Amherst, Amherst, MA

172

W436: Host-Microbe Interactions The Downy Mildews: So Many Genomes, so Little Time

Lida Derevnina1, Sebastian Reyes Chin-Wo1, Frank Martin2, Kelsey Wood1, Lutz Froenicke1, Joan Wong3, Rosa Juliana Gil1, Steve Klosterman4, Otmar Spring5, Rajan Sharma6, Rajeev K Varshney6, Clint Magill7 and Richard Michelmore1, (1)Genome Center, University of California, Davis, CA, (2)USDA ARS, Salinas, CA, (3)Bayer CropScience NV, Ghent, Belgium, (4)USDA, Salinas, CA, (5)University of Hohenheim, Stuttgart, Germany, (6)ICRISAT, Greater Hyderabad, India, (7)Texas A&M University, College station, TX W437: Host-Microbe Interactions Human-Specific Changes in the Biology of Siglecs and their Relevance for Host–Microbe Interactions

Flavio Schwarz, University of California, San Diego, La Jolla, CA W438: Host-Microbe Interactions Salmon Skin – Ground Zero of the Molecular War

Laura M Braden, University of Victoria, Victoria, BC, Canada and Simon R M Jones, Pacific Biological Station, Fisheries & Oceans Canada, Nanaimo, BC, Canada W439: International Goat Genome Consortium Introduction

Gwenola Tosser-Klopp, INRA, Castanet-Tolosan, France

W440: International Goat Genome Consortium Progress on the Reassembly and Annotation of the Goat Genome

Steven G Schroeder1, Derek Bickhart1, Sergey Koren2, Adam Phillippy2, Timothy PL Smith3, Joshua N Burton4, Ivan Liachko4, Brian Sayre5, Heather J Huson6, Curtis P VanTassell1 and Tad S Sonstegard1, (1)Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD, (2)DOD - National Biodefense and Countermeasures Center, Frederick, MD, (3)USDA-ARS, US Meat Animal Research Center, Clay Center, NE, (4)University of Washington - Department of Genome Sciences, Seattle, WA, (5)Virginia State University, Petersburg, VA, (6)Cornell University, Ithaca, NY W441: International Goat Genome Consortium ADAPTmap: A First Insight into Goat Adaptation

Ezequiel Luis Nicolazzi, Fondazione Parco Tecnologico Padano, Lodi, Italy, Alessandra Stella, FPTP, Lodi, Italy and the AdaptMap Group, Parco Tecnologico Padano, Lodi, Italy

W442: International Goat Genome Consortium Analysing the Genetic Diversity of Domestic and Wild Goats in Spain

Arianna Manunza1, Antonia Noce1, Juan Manuel Serradilla2, Felix Goyache3, Amparo Martínez2, Juan Capote4, Juan V Delgado2, Jordi Jordana5, Eva Muñoz-Mejías2, Antonio Molina2, Vincenzo Landi2, Raul Tonda6, Sergi Beltran Beltran6, Agueda Pons7, Valentin Adrian Balteanu8, Amadou Traore9, Oriol Vidal10, Montse Vidilla11, Angela Canovas1, Armand Sanchez1 and Marcel Amills1, (1)Center for Research in Agricultural Genomics, Bellaterra, Spain, (2)University of Cordoba, Cordoba, Spain, (3)SERIDA, Villaviciosa, Spain, (4)ICIA, La Laguna, Spain, (5)Universitat Autonoma Barcelona, Bellaterra, Spain, (6)Centre Nacional d'Anàlisi Genòmica, Barcelona, Spain, (7)Serveis Millora Agrària, Palma de Mallorca, Spain, (8)University of Agricultural Sciences and Veterinary Medicine Cluj-Napoca, Romania, Cluj-Napoca, Romania, (9)INERA, Ouagadougou, Burkina Faso, (10)Universitat de Girona, Girona, Spain, (11)ARCABRA, Rasquera, Spain W443: International Goat Genome Consortium Population Structure and Breed Relations of South African Indigenous Goat Ecotypes Using Genome-Wide SNP Data

Khanyisile Mdladla1, Edgar F Dzomba2, Heather J Huson3 and Farai C Muchadeyi1, (1)Agricultural Research Council, Pretoria, South Africa, (2)University of KwaZulu-Natal, Pietermartzburg, South Africa, (3)Cornell University, Ithaca, NY W444: International Goat Genome Consortium Toward Genomic Selection in French Dairy Goats

Céline Carillier1, Hélène Larroque2 and Christèle Robert-Granié2, (1)INRA UMR 1388 GenPhySE Toulouse, Castanet Tolosan, France, (2)INRA UM 1388, Castanet Tolosan cedex, France

W445: International Goat Genome Consortium FR-AgENCODE: A Pilot Project to Improve the Functional Annotation of Livestock Genomes

Sylvain Foissac, INRA - GenPhySE, Castanet Tolosan, France and Elisabetta Giuffra, INRA, UMR de Génétique Animale et Biologie Intégrative, Jouy-en-Josas, France W446: International Goat Genome Consortium Conclusion / Discussion

Gwenola Tosser-Klopp, INRA, Castanet-Tolosan, France W447: International Rice Informatics Consortium Update on IRIC Portal and Consortium

Nickolai Alexandrov, International Rice Research Institute, Los Baños, Laguna, Philippines W448: International Rice Informatics Consortium Enabling Knowledge Management in the Agronomic Domain

Pierre Larmande, IRD, UMR DIADE, Institut de Biologie Computationnelle, Montpellier, France, Aravind Venkatesan, Institut de Biologie Computationnelle, Montpellier, France, Manuel Ruiz, CIRAD, UMR AGAP, Institut de Biologie Computationnelle, Montpellier Cedex 5, France, Guilhem Sempéré, CIRAD, UMR Intertryp, Montpellier, France and Patrick Valduriez, INRIA - LIRMM - Institut de Biologie Computationnelle, Montpellier, France

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W449: International Rice Informatics Consortium TBA

Rod A Wing, University of Arizona, Arizona Genomics Institute, Tucson, AZ W450: International Rice Informatics Consortium TBA

Ruaraidh Hamilton, International Rice Research Institute, Metro Manila, Philippines W451: International Sheep Genome Consortium LD Chip: Design for Parentage, Imputation and Functional SNPs

Rudiger Brauning, AgResearch Ltd, Mosgiel, Otago, New Zealand W452: International Sheep Genome Consortium LD Chip: Design for Parentage, Imputation and Functional SNPs

Carole R Moreno, INRA, Toulouse, France

W453: International Sheep Genome Consortium Improvement to OARv31 Using Long Read Technology

Kim C Worley1, Adam C English1, Xiang Qin1, Shwetha C Murali1, Daniel S T Hughes1, Stephen Richards1, Jeffrey Rogers1, Yi Han1, Vanessa Vee1, Min Wang1, Michael P Heaton2, Brian Dalrymple3, James W Kijas4, Noelle Cockett5, Eric Boerwinkle1, Donna M Muzny1 and Richard A Gibbs1, (1)Baylor College of Medicine, Houston, TX, (2)USDA, ARS, US Meat Animal Research Center (USMARC), Clay Center, NE, (3)CSIRO Agriculture Flagship, St Lucia, Australia, (4)CSIRO Animal, Health and Food Science, St Lucia, Australia, (5)Utah State University, Logan, UT W454: International Sheep Genome Consortium Functional Annotation of Farm Animal Genomes (FAANG)

Alan L Archibald, The Roslin Institute and R(D)SVS, University of Edinburgh, Midlothian, United Kingdom W455: International Sheep Genome Consortium SheepGenomesDB: Now and In the Future

James Kijas, CSIRO Agriculture Flagship, St Lucia, Australia W456: International Sheep Genome Consortium Genome Sequencing from Historical Parchment

Daniel G Bradley, Trinity College Dublin, Dublin, Ireland

W457: International Sheep Genome Consortium Genome Sequencing from Historical Parchment

Matthew D Teasdale, Trinity College Dublin, Dublin, Ireland W458: International Sheep Genome Consortium Genotype By Sequencing (GBS)

Shannon Clarke, AgResearch Ltd Invermay Agricultural Centre, Dunedin, New Zealand W459: International Sheep Genome Consortium Genotype By Sequencing (GBS)

Rudiger Brauning, AgResearch Ltd, Mosgiel, Otago, New Zealand

W460: International Wheat Genome Sequencing Consortium (IWGSC) BAC-Based Sequencing of the Aegilops tauschii Genome

Jan Dvorak1, Olin Anderson2, Jeffrey L Bennetzen3, Xiongtao Dai4, Karin R Deal1, Katrien M Devos3, Jaroslav Dolezel5, Yong Q Gu2, Naxin Huo6, Philippe Leroy7, Yong Liang8, Zhiyong Liu8, Ming-Cheng Luo9, Eric Lyons10, Zhengqiang Ma11, Long Mao12, Klaus FX Mayer13, W Richard McCombie14, Pat McGuire1, Hans-Georg Mueller4, Shuhong Ouyang8, Geo Pertea15, Daniela Puiu15, Steven L Salzberg15, Carol Soderlund16, Qixin Sun17, Hao Wang18, Yi Wang1, Zhenzhong Wang8, Thomas Wicker19, Lichan Xiao8, Frank M You20 and Tingting Zhu1, (1)Department of Plant Sciences, University of California, Davis, CA, (2)USDA ARS, Western Regional Research Center, Albany, CA, (3)University of Georgia, Athens, GA, (4)Dept of Statistics, Davis, CA, (5)Institute of Experimental Botany, Olomouc, Czech Republic, (6)Dept of Plant Sciences, Davis, CA, (7)INRA - UMR 1095 GDEC, Clermont-Ferrand, France, (8)China Agricultural University, Beijing, China, (9)University of California, Davis, CA, (10)School of Plant Sciences, iPlant Collaborative, Tucson, AZ, (11)Nanjing Agricultural University, Nanjing, China, (12)Chinese Academy of Agricultural Sciences, Beijing, China, (13)Plant Genome and Systems Biology, Helmholtz Center Munich, Neuherberg, Germany, (14)Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, (15)Johns Hopkins University, School of Medicine, Baltimore, MD, (16)University of Arizona/Bio5 Institute, Tucson, AZ, (17)Northwest A&F University, Yangling, China, (18)Department of Genetics, University of Georgia, Athens, GA, (19)University of Zurich, Zurich, Switzerland, (20)Cereal Research Centre, Morden, MB, Canada

174

W461: International Wheat Genome Sequencing Consortium (IWGSC) A High Density GBS Map of Bread Wheat and Its Application for Genetic Improvement of the Crop

Sukhwinder Singh1, Huihui Li1, Prashant Vikram1, Ravi P Singh2, Andrzej Killian3 and Peter Wenzl4, (1)CIMMYT, Texcoco, Mexico, (2)CIMMYT, Mexico City, Mexico, (3)DArT, Camberra, Australia, (4)CIMMYT, TEXCOCO, Mexico W462: International Wheat Genome Sequencing Consortium (IWGSC) Exome Sequencing of Wheat Mutant Populations Opens a New Era for Wheat Functional Genetics

Jorge Dubcovsky, University of California Davis, Davis, CA W463: International Wheat Genome Sequencing Consortium (IWGSC) Use of the Wheat Genome to Expedite the Identification of Disease Resistance Genes

Fiona Doohan1, Alexandre Perochon1, Ewen Mullins2, A Kahla3, L Gunupuru3 and C Brennan3, (1)University College Dublin, Dublin, Ireland, (2)Teagasc, Carlow, Ireland, (3)UCD School of Biology and Environmental Science, Dublin, Ireland W464: International Wheat Genome Sequencing Consortium (IWGSC) Susceptibility to Fusarium Head Blight By Wheat Is Regulated By Silencing RNAs of Pathogen Origin

Yang Yen, South Dakota State University, Brookings, SD

W465: International Wheat Genome Sequencing Consortium (IWGSC) RNA-Seq Bulked Segregant Analysis Enables the Identification of High-Resolution Genetic Markers for Breeding in Hexaploid Wheat

Ricardo H Ramirez-Gonzalez1, Vanesa Segovia2, Nicholas Bird3, Paul Fenwick4, Sarah Holdgate5, Simon Berry4, Peter Jack6, Mario Caccamo1 and Cristobal Uauy2, (1)The Genome Analysis Centre, Norwich, United Kingdom, (2)John Innes Centre, Norwich, England, (3)John Innes Centre, Norwuch, United Kingdom, (4)Limagrain UK Ltd, Market Rasen, United Kingdom, (5)NIAB, Cambridge, United Kingdom, (6)RAGT Seeds, Saffron Walden, United Kingdom W466: Int'l Phytomedomics and Nutriomics Consortium (ICPN) Genetics Meets Nutriomics: Genomic-Assisted Marker Development for Nutritional Quantitative Traits

Yong Pyo Lim, Chungnam National University, Daejeon, South Korea W467: Int'l Phytomedomics and Nutriomics Consortium (ICPN) Transcriptomics Approach to Understand Differences in Phytonutrient Composition in Plants Grown Under Different Production Systems

Amit Dhingra, Department of Horticulture, Washington State University, Pullman, WA W468: Int'l Phytomedomics and Nutriomics Consortium (ICPN) Genetic Variation for High Beta-Carotene Accumulation in Crops

Li Li, USDA-ARS/Cornell University, Ithaca, NY

W469: Int'l Phytomedomics and Nutriomics Consortium (ICPN) Development and Use of Novel Subtracted Diversity Array for Fingerprinting Medicinal Plants

Nitin Mantri, RMIT University, Melbourne, Victoria, Australia and Edwin Pang, RMIT University, Bundoora, Australia W470: Int'l Phytomedomics and Nutriomics Consortium (ICPN) Breeding Lettuce to Maximize Nutrional Content Across Diverse Environments

David W Still, Cal Poly Pomona, Pomona, CA W471: IWGSC - Standards and Protocols Improving the Physical Map and Sequence of the 7DS with a BioNano Map

Hana Simkova1, Alex Hastie2, Helena Stankova1, Jan Vrana1, Marie Kubaláková1, Paul Visendi3, Satomi Hayashi4, Ming-Cheng Luo5, Jacqueline Batley6, David Edwards4 and Jaroslav Dolezel1, (1)Institute of Experimental Botany, Olomouc, Czech Republic, (2)BioNano Genomics, San Diego, CA, (3)Australian Centre for Plant Functional Genomics, Brisbane, Australia, (4)University of Queensland, Brisbane, Australia, (5)University of California, Davis, CA, (6)The University of Western Australia, Perth, WA, Australia W472: IWGSC - Standards and Protocols Reference Assembly of Chromosome 7A as a Platform to Study Regions of Agronomic Importance

Gabriel Keeble-Gagnere, Murdoch University, Perth, Australia

W473: IWGSC - Standards and Protocols Chromosome 1B: A Step Further in the Sequencing of the Hexaploid Wheat Genome

Adriana Alberti1, Valerie Barbe1, Arnaud Couloux1, Frederic Choulet2, Sophie Mangenot1, Karine Labadie1, Jean Marc Aury1, Romain Philippe2, Céline Durand1, Caroline Belser1, Arnaud Bellec3, Hélène Bergès3, Zeev M Frenkel4, Tzion Fahima4, Abraham B Korol5, International Wheat Genome Sequencing Consortium6, Catherine Feuillet7, Etienne Paux2 and Patrick Wincker1, (1)CEA - Genoscope, Evry, France, (2)INRA GDEC, Clermont-Ferrand, France, (3)INRA - CNRGV, Castanet Tolosan, France, (4)University of Haifa, Haifa, Israel, (5)Institute of Evolution, University of Haifa, Haifa, Israel, (6)IWGSC, Bethesda, MD, (7)Bayer CropScience, Morrisville, NC W474: IWGSC - Standards and Protocols BioNano Genome Map to Facilitate the Assembly of the Aegilops tauschii Genome

Ming-Cheng Luo1, Tingting Zhu1, Karin R Deal1, Armond Murray1, Sonny Van1, Thanh C Ngo1, Shuyang Liu1, Juan C Rodriguez1, Hai Long1, Lichan Xiao1, Naxin Huo1, Luis Curiel1, Luxia Yuan1, Yi Wang1, Yong Q Gu2, Olin Anderson2, Daniela Puiu3, Geo Pertea3, Steven L Salzberg3, Shuhong Ouyang4, Zhenzhong Wang4, Yong Liang4, Qixin Sun4, Zhiyong Liu4, Long Mao5, Zhengqiang Ma6 and Jan Dvorak1, (1)Department of Plant Sciences, University of California, Davis, CA, (2)USDA ARS, Western Regional Research Center, Albany, CA, (3)Johns Hopkins University, School of Medicine, Baltimore, MD, (4)China Agricultural University, Beijing, China, (5)Chinese Academy of Agricultural Sciences, Beijing, China, (6)Nanjing Agricultural University, Nanjing, China

175

W475: IWGSC - Standards and Protocols Using LTC Software for Physical Mapping and Assisting in Sequence Assembly

Zeev M Frenkel1, Vladimir A Glikson2 and Abraham B Korol1, (1)Institute of Evolution, University of Haifa, Haifa, Israel, (2)MultiQTL Ltd, Haifa, Israel W476: IWGSC - Standards and Protocols Progress in Sequencing and Scaffolding Chromosome 1A

Andrew G Sharpe, National Research Council Canada, Saskatoon, SK, Canada W477: IWGSC - Standards and Protocols Application of RH Mapping in Wheat Genome Analysis

Vijay K Tiwari, Kansas State University, Manhattan, KS W478: IWGSC - Standards and Protocols IWGSC Sequence Repository: How to Facilitate Pseudomolecule Assembly?

Michael Alaux1, Frederic Choulet2, Loic Couderc1, Françoise Alfama1, Véronique Jamilloux1, Thomas Letellier1, Raphael Flores1, Claire Guerche1, Mikael Loaec1, Etienne Paux2, Delphine Steinbach1 and Hadi Quesneville1, (1)INRA - URGI, Versailles, France, (2)INRA GDEC, Clermont-Ferrand, France

W479: “It’s not just the data, it’s the analysis” - Why a Biology Cyberinfrastructure is the Best Way to Meet the Challenges of Large Datasets Overview of the iPlant Collaborative

Matthew Vaughn, Texas Advanced Computing Center, University of Texas, Austin, TX W480: “It’s not just the data, it’s the analysis” - Why a Biology Cyberinfrastructure is the Best Way to Meet the Challenges of Large Datasets Functional Analysis of Your RNAseq Data

Fiona McCarthy, University of Arizona, Tucson, AZ W481: “It’s not just the data, it’s the analysis” - Why a Biology Cyberinfrastructure is the Best Way to Meet the Challenges of Large Datasets Flash Demo: Annotating genomes with MAKER-P and the iPlant Discovery Environment

Sabarinath Subramaniam, University of Arizona, Tucson, AZ W482: “It’s not just the data, it’s the analysis” - Why a Biology Cyberinfrastructure is the Best Way to Meet the Challenges of Large Datasets A Hybrid Approach to Assemble and Annotate the Brassica rapa Transcriptome in the Cloud through the iPlant Collaborative and XSEDE

Upendra Kumar Devisetty, University of California, Davis, CA

W483: “It’s not just the data, it’s the analysis” - Why a Biology Cyberinfrastructure is the Best Way to Meet the Challenges of Large Datasets Flash Demo: Atmosphere Cloud Computing - Applied to Visualizing RNA-Seq Data

Kapeel Chougule, Cold Spring Harbor Laboratory, Cold Spring Harbor Laboratory, NY W484: “It’s not just the data, it’s the analysis” - Why a Biology Cyberinfrastructure is the Best Way to Meet the Challenges of Large Datasets Using iPlant Tools and Plastome Sequencing As a Springboard into Comparative Genomics: Plastome Organization and Sequence for the Mimosoid Legume Leucaena trichandra

Donovan Bailey, New Mexico State University, Las Cruces, NM W485: “It’s not just the data, it’s the analysis” - Why a Biology Cyberinfrastructure is the Best Way to Meet the Challenges of Large Datasets Flash Demo: Secure, Collaborative, Management of Your Life Sciences Data with the Data Store

Jeremy DeBarry, University of Arizona, Tucson, AZ W486: “It’s not just the data, it’s the analysis” - Why a Biology Cyberinfrastructure is the Best Way to Meet the Challenges of Large Datasets Utilizing iPlant to Unearth Long Non-Coding RNAs and Characterize Their Evolution in the Plant Family Brassicaceae

Andrew D Nelson1, Evan S Forsythe1, Eric Lyons2 and Mark A Beilstein1, (1)School of Plant Sciences, University of Arizona, Tucson, AZ, (2)School of Plant Sciences, iPlant Collaborative, Tucson, AZ

W487: “It’s not just the data, it’s the analysis” - Why a Biology Cyberinfrastructure is the Best Way to Meet the Challenges of Large Datasets Flash Talk: An Ontology Approach to Comparative Phenomics in Plants

Eva Huala1, Anika Oellrich2, Ramona Walls3, Ethalinda Cannon4, Steven B Cannon5, Laurel Cooper6, Jack Gardiner7, Georgios Gkoutos8, Lisa Harper9, Mingze He4, Robert Hoehndorf10, Pankaj Jaiswal6, Scott R Kalberer5, Johnny Lloyd11, David Meinke12, Naama Menda13, Laura Moore14, Rex T Nelson5, Anuradha Pujar15 and Carolyn J Lawrence4, (1)Phoenix Bioinformatics, Redwood City, CA, (2)Wellcome Trust Sanger Institute, Hinxton, United Kingdom, (3)The iPlant Collaborative, Tucson, AZ, (4)Iowa State University, Ames, IA, (5)USDA-ARS-CICGRU, Ames, IA, (6)Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR, (7)Iowa State University, Tucson, AZ, (8)Computer Science Department, Aberystwyth University, Aberystwyth, United Kingdom, (9)USDA ARS, Albany, CA, (10)King Abdullah University of Science & Technology, Thuwal, Saudi Arabia, (11)Michigan State University, East Lansing, MI, (12)Oklahoma State University, Stillwater, OK, (13)Boyce Thompson Institute for Plant Research, Ithaca, NY, (14)Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, (15)Cornell University, Ithaca, NY W488: “It’s not just the data, it’s the analysis” - Why a Biology Cyberinfrastructure is the Best Way to Meet the Challenges of Large Datasets Life Sciences Cyberinfrastructure at Your Fingertips: Using Internet2 to Power Scientific Collaboration

Daniel B Taylor, Internet2, Washington, DC

176

W489: Legumes Introgression of a Rare Haplotype from Southeastern Africa to Breed Cowpeas with Larger Seeds

Mitchell R Lucas, Bao Lam Huynh, Philip A Roberts and Timothy J Close, University of California, Riverside, CA W490: Legumes The MSH1 System for Inducing Epigenetic Variation in Legume Systems

Sally Mackenzie, Center for Plant Science Innovation, University of Nebraska,, Lincoln, NE W491: Legumes The Narrow-Leafed Lupin Genome Assembly, Transcriptome Sequencing of Different Tissue Types and Generation of Gene-Based Molecular Markers

Lars Kamphuis1, James Hane2, Matthew N Nelson3, Yao Ming4, Jianbo Jian4, Gagan Garg2, Lingling Gao2, Craig Atkins3 and Karam Singh1, (1)University of Western Australia, Institute of Agriculture & CSIRO Agriculture Flagship, Crawley, Australia, (2)CSIRO Agriculture Flagship, Wembley, Australia, (3)University of Western Australia, School of Plant Biology, Crawley, Australia, (4)Beijing Genome Institute, Shenzhen, China W492: Legumes Role of Membrane Rafts during Legume Nodulation

Marc Libault, University of Oklahoma, Norman, OK

W493: Legumes Genome-Wide Identification of the Phaseolus vulgaris sRNAome using Small RNA and Degradome Sequencing

Damien Formey1, Luis P Iñiguez1, Georgina Navarrete-Estrada2, Pablo Pelàez2, Ramanjulu Sunkar3, Federico Sanchez2, Jose L Reyes2 and Georgina Hernandez1, (1)Centro de Ciencias Genomicas, Universidad Nacional Autonoma de Mexico, Cuernavaca, Morelos, Mexico, (2)IBT-UNAM, Cuernavaca, Mexico, (3)Oklahoma State University, Stillwater, OK W494: Legumes Integrated Epigenomic and Transcriptomic Profiling of the Resistance Response of Common Bean (Phaseolus vulgaris) to Bean Rust (Uromyces appendiculatus)

Venu (Kal) Kalavacharla, Delaware State University, Dover, DE W495: Maize Introductory Remarks

Patrick S Schnable, Department of Agronomy, Iowa State University, Ames, IA W496: Maize Maize is not Arabidopsis

Nathan M Springer, University of Minnesota, St Paul, MN

W497: Maize The Real Genes of Maize: Marrowing the Target Space for Genetic and Genomic Studies

James C Schnable, University of Nebraska-Lincoln, Lincoln, NE W498: Maize Regulatory Networks Controlling Inflorescence Architecture Traits in Maize

Andrea L Eveland, Donald Danforth Plant Science Center, St Louis, MO W499: Maize The Maize Ligule: How to Draw a Line on a Leaf

Michael Scanlon, Cornell University, Ithaca, NY W500: Managing Crop Phenotype Data Breeding4Rice: Breeding Information Management System in a Process Organization

Marko Karkkainen and Eero Nissila, International Rice Research Institute, Metro Manila, Philippines W501: Managing Crop Phenotype Data Application Programming Interface (API) for Plant Breeding Data and Software Tools

Clay Birkett1, David Matthews1, Jean-Luc Jannink2 and Victoria Carollo Blake3, (1)USDA-ARS, Ithaca, NY, (2)Cornell University, Ithaca, NY, (3)USDA ARS WRRC, Albany, CA

W502: Managing Crop Phenotype Data The KDDArT Knowledge Discovery System

Grzegorz Uszynski and Andrzej Kilian, Diversity Arrays Technology Pty Ltd (DArT PL), Canberra, Australia W503: Managing Crop Phenotype Data Managing Phenotypic Data through the IBP's Breeding Management System

Graham McLaren1, Jan Erik Backlund2, Mark Sawkins1, Rebecca Berrigan3 and Brent Whitney4, (1)Generation Challenge Programme, Texcoco, Mexico, (2)CGIAR, Indianapolis, IN, (3)Leafnode Llc, Mill Valley, CA, (4)Leafnode Llc, San Francisco, CA W504: Managing Crop Phenotype Data Phenotypic Data Exchange and Processing Using ISA-Tab Standard: transPLANT Project Use Case with GnpISEphesis and Bii

Cyril Pommier1, Pawel Krajewski2, Thomas Letellier1, Hanna Cwiek3, Célia Michotey4, P Roumet5, Raphael Flores1, Guillaume Merceron6, Erik Kimmel1, Michael Alaux1, Delphine Steinbach1, Hadi Quesneville1 and Augustyn Markiewicz7, (1)INRA - URGI, Versailles, France, (2)Institute of Plant Genetics PAS, Poznan, Poland, (3)Institute of Plant Genetics, Polish Academy of Science, Poznan, Poland, (4)INRA URGI, Versailles, France, (5)AGAP - INRA, Montpellier, France, (6)INRA – URGI, Versailles, France, (7)Poznan University of Life Sciences, Poznan, Poland W505: Managing Crop Phenotype Data Crop Data in Unity

Yaniv Semel, Phenome Networks, Rehovot, Israel

177

W506: Mutation Screening The Legume Non-Transgenic LORE1 Mutant Collection

Anna Malolepszy, Dorian F Urbanski, Niels Sandal, Terry Mun, Jens Stougaard and Stig U Andersen, Aarhus University, Aarhus, Denmark W507: Mutation Screening Single Molecule Sequencing of Somatic Structural Variations

Anand Patel, Bioinformatics and Systems Biology Program, Moores Cancer Center, Dept Computer Science, UCSD, La Jolla, CA W508: Mutation Screening A Barley Root Mutants Collection for Fast Forward Genetics

Sara G Milner1, Riccardo Bovina1, Carlos Busanello2, Valentina Talame1, Roberto Tuberosa1, Nils Stein3 and Silvio Salvi1, (1)DipSA - University of Bologna, Bologna, Italy, (2)Department of Plant Science, University Federal of Pelotas, Capão do Leão-RS, Brazil, (3)Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Stadt Seeland, Germany W509: Mutation Screening A Soybean Cyst Nematode Resistance Gene Points to a New Mechanism of Plant Resistance to Pathogens

Khalid Meksem, Department of Plant Soil and Agricultural Systems, SIUC, Carbondale, IL

W510: Mutation Screening Viral-Mediated Genome Editing and Regulation in Plants Using CRISPR/Cas System

Magdy Mahfouz, Biological and Environmental Sciences and Engineering Division, Thuwal, Saudi Arabia W511: Mutation Screening High Throughput Sequence-Based Screening with Keypoint Mutation Breeding

Michiel van Eijk, KeyGene, Wageningen, Netherlands W512: NCBI Genome Resources Improving the Flow of Data to National Center of Biotechnology Information Sequence Repositories, SRA and Genbank

Ilene Mizrachi, National Center for Biotechnology Information (NCBI/NLM/NIH), Bethesda, MD W513: NCBI Genome Resources Variation at NCBI: Resources, Tools and Submissions

Jennifer Lee, National Center for Biotechnology Information (NCBI/NLM/NIH), Bethesda, MD W514: NCBI Genome Resources Update on the Eukaryotic Genome Annotation Pipeline

Francoise Thibaud-Nissen, NCBI/NLM/NIH, Bethesda, MD

W515: NCBI Genome Resources From Genes to Genomes – New Features and Data Access

Kim D Pruitt1, Terence D Murphy1 and Paul Kitts2, (1)National Center for Biotechnology Information (NCBI/NLM/NIH), Bethesda, MD, (2)NIH/NLM/NCBI, Bethesda, MD W516: NCBI Genome Resources Annual Report

Tatiana Tatusova, National Center for Biotechnology Information (NCBI/NLM/NIH), Bethesda, MD W517: New Approaches for Developing Disease Resistance in Cereals Editing the Wheat Genome for Disease Resistance

Jin-Long Qiu, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China W518: New Approaches for Developing Disease Resistance in Cereals Rust Proteomics: Tools to Understand Effector Molecules

Diana Garnica, College of Agricultural & Marine Sciences, Muscat, Oman and John P Rathjen, The Australian National University, Canberra, Australia W519: New Approaches for Developing Disease Resistance in Cereals Developing new tools for interrogating cereal invaders

Diane Saunders, The Genome Analysis Centre, Norwich, United Kingdom

W520: New Approaches for Developing Disease Resistance in Cereals Moving Forward: Metabolic Engineering for Disease Resistance

Anne Osbourn, John Innes Institute, Norfolk, United Kingdom W521: New Approaches for Developing Disease Resistance in Cereals Allele Mining and Enhanced Genetic Recombination for Stress Resistant Crops

Hei Leung, International Rice Research Institute, Los Banos, Philippines W522: Next Generation Genome Annotation and Analysis Nuances in Plant Genome Annotation: Those Duplicated and Dead Genes

Shin-Han Shiu, Michigan Stat University, Lansing, MI W523: Next Generation Genome Annotation and Analysis Transposon Density Affects Homeolog Specific Gene Expression in Allopolyploid Monkeyflower (Mimulus)

Joshua Puzey, College of William and Mary, Williamsburg, VA

178

W524: Next Generation Genome Annotation and Analysis Transposable Element Islands Facilitate Adaptation to Novel Environments in an Invasive Species

Lukas Schrader1, Jay W Kim2, Daniel D Ence3, Aleksey Zimin4, Antonia Klein1, Katharina Wyschetzki1, Tobias Weichselgartner1, Carsten Kemena5, Johannes Stökl1, Eva Schultner6, Yannick Wurm7, Christopher D Smith8, Mark Yandell3, Jürgen Heinze1, Jürgen Gadau9 and Jan Oettler1, (1)Institut für Zoologie, Universität Regensburg, Regensburg, Germany, (2)Department of Biomolecular Engineering, University of California at Santa Cruz, Santa Cruz, Santa Cruz, CA, (3)Eccles Institute of Human Genetics, University of Utah, Salt Lake City, UT, (4)Institute for Physical Science and Technology, University of Maryland, College Park, MD, (5)Institute for Evolution and Biodiversity, Westfällische Wilhelms-Universität, Munster, Germany, (6)Department of Biosciences, University of Helsinki, Helsinki, Finland, (7)School of Biological and Chemical Sciences, Queen Mary University of London, London, United Kingdom, (8)Department of Biology, San Francisco State University, San Francisco, CA, (9)Arizona State University, Tempe, AZ W525: Next Generation Genome Annotation and Analysis The Spotted Gar Provides Connectivity Among Vertebrate Genomes and Insights into Evolution By Genome Duplication in Fish

Ingo Braasch, Peter Batzel, Spotted Gar Genome Consortium and John H Postlethwait, University of Oregon, Eugene, OR

W526: Non-Seed Plants Klebsormidium flaccidum Genome Reveals Genome Evolution for Plant Terrestrial Adaptation

Koichi Hori1, Satoshi Kondo1, Kinuka Ohtaka1, Noriaki Tounosu1, Tei Watanabe1, Ken Kurokawa2 and Ohta Hiroyuki1, (1)Department of Biological Sciences, Tokyo Institute of Technology, Yokohama, Japan, (2)Earth-Life Science Institute, Tokyo Institute of Technology, Tokyo, Japan W527: Non-Seed Plants The Chara braunii Genome

Tomoaki Nishiyama, Kanazawa University, Kanazawa, Japan, Atsushi Toyoda, Comparative Genomics laboratory, NIG, ROIS, Shizuoka, Japan, Yutaka Suzuki, University of Tokyo, Kashiwa, Japan, Asao Fujiyama, Comparative Genomics Laboratory, National Institute of Genetics, Mishiyama, Japan, Stefan A Rensing, Faculty of Biology, University of Marburg, Marburg, Germany and Hidetoshi Sakayama, Kobe University, Kobe, Japan W528: Non-Seed Plants The Marchantia Genome Project

Jim Haseloff, University of Cambridge, Cambridge, United Kingdom W529: Non-Seed Plants The Sphagnum Genome Project

Dave Weston1, Jonathan Shaw2, Jeremy Schmutz3, Shengqiang Shu4, Jerry Jenkins5 and Jane Grimwood3, (1)Oak Ridge National Laboratory, Oak Ridge, TN, (2)Duke University, Durham, NC, (3)HudsonAlpha Institute for Biotechnology, Huntsville, AL, (4)DOE Joint Genome Institute, Walnut Creek, CA, (5)DOE Joint Genome Institute, Huntsville, AL

W530: Non-Seed Plants The Ceratodon Genome Project

Stuart McDaniel, University of Florida, Gainesville, FL W531: Non-Seed Plants The Physcomitrella patens Flagship Genome Revisited Based on Pseudochromosomes

Daniel Lang, University of Freiburg, Plant Biotechnology, Freiburg, Germany and Nico van Gessel, Plant Biotechnology, University of Freiburg, Freiburg, Germany W532: NRSP-8 Animal Genome Improving the Reference - Better Genomes for the Sheep and the Cow

Kim Worley, Baylor College of Medicine, Houston, TX W533: NRSP-8 Animal Genome Genomic Selection 20

John Hickey1, John A Woolliams1, Matthew Cleveland2, Andreas Kranis3, Janez Jenko1, Miguel Perez Enciso4 and Gregor Gorjanc1, (1)The Roslin Institute, University of Edinburgh, Midlothian, United Kingdom, (2)Genus plc, Hendersonville, TN, (3)Aviagen Ltd, Midlothian, United Kingdom, (4)Centre for Research in Agrigenomics (CRAG) and ICREA, Barcelona, Spain

W534: NRSP-8 Animal Genome Integrative Genomics to Provide Basic and Applied Knowledge to Control Marek's Disease in Chicken

Hans Cheng, USDA, ARS, ADOL, East Lansing, MI W535: NRSP-8 Animal Genome The Functional Annotation of Animal Genomes (FAANG) Initiative

Elisabetta Giuffra1, Sylvain Foissac2, Ole Madsen3, Martien AM Groenen3, Richard Crooijmans3, Pablo J Ross4, Ian Korf5 and Huaijun Zhou6, (1)INRA, UMR de Génétique Animale et Biologie Intégrative, Jouy-en-Josas, France, (2)INRA - GenPhySE, Castanet Tolosan, France, (3)Wageningen University, Wageningen, Netherlands, (4)Animal Science, University of California, Davis, CA, (5)The Genome Center, University of California, Davis, Davis, CA, (6)University of California, Davis, CA W536: Oats Oat Global: Uniting the Oat World at OatGlobalorg

Gabriele Gusmini, PepsiCo, St Paul, MN, Catherine Howarth, IBERS, Aberystwyth University, Aberystwyth, United Kingdom, Nicholas A Tinker, Agriculture and Agri-Food Canada, Ottawa, ON, Canada, Jack K Okamuro, USDA ARS, Beltsville, MD, Ben Boroughs, NAMA, TBA, DC, Luiz Federizzi, UFRGS, TBA, Brazil, A Bruce Roskens, Grain Millers, Inc, Naperville, IL, Pamela Zwer, SARDI, TBA, Australia and Jim Dyck, Oat Advantage, TBA, SK, Canada

179

W537: Oats Oat Global and T3-Oat: Relational Data for Oat Genotypes and Phenotypes

Clare Saied1, Yung-Fen Huang2, Victoria Carollo Blake3, David Matthews4, Clay Birkett4, Nicholas A Tinker2 and Jean-Luc Jannink4, (1)Cornell University, Dept of Plant Breeding and Genetics, Ithaca, NY, (2)Agriculture and Agri-Food Canada, Ottawa, ON, Canada, (3)USDA ARS WRRC, Albany, CA, (4)USDA-ARS, Ithaca, NY W538: Oats Ode to an Oat: Theme and Variations on a Map

Shawn Chaffin1, Yung-Fen Huang2,3, Scott Smith4, Robert Reid1, Ebrahiem Babiker5, Gnanesh Nanjappa6, Bradley Foresman7, Steven Blanchard1, Jeremy Jay8, Charlene P Wight3, Shiaoman Chao9, Rebekah Oliver10, Emir Islamovic11, Kathy L Klos5, Fred L Kolb7, Curt A McCartney6, J Michael Bonman5, Cory Brouwer12, Rick Jellen13, Jesse Poland14, Tzung-Fu Hsieh4, Ryan Brown15, Joseph Lutz16, Eric Jackson15, Nicholas A Tinker3 and Jessica Schlueter1, (1)University of North Carolina at Charlotte, Charlotte, NC, (2)Department of Agronomy, National Taiwan University, Taipei, Taiwan, (3)Agriculture and Agri-Food Canada, Ottawa, ON, Canada, (4)North Carolina State University, Kannapolis, NC, (5)USDA-ARS, Aberdeen, ID, (6)Agriculture and Agri-Food Canada, Winnipeg, MB, Canada, (7)University of Illinois, Urbana, IL, (8)Univeristy of North Carolina, Charlotte, Kannapolis, NC, (9)USDA-ARS, Fargo, ND, (10)North Dakota State University, Fargo, ND, (11)BASF, Research Triangle Park, NC, (12)University of North Carolina at Charlotte, Kannapolis, NC, (13)Brigham Young University, Provo, UT, (14)Kansas State University, Manhattan, KS, (15)General Mills, Kannapolis, NC, (16)General Mills, LeSueur, MN

W539: Oats Characterization of Hemicellulose and Starch Biosynthesis Genes in Avena

Melissa C Fogarty1, Cassandra Anne Dohse1, Evan Braithwaite1, Jeff Maughan1, Eric Jackson2 and Eric N Jellen1, (1)Brigham Young University, Provo, UT, (2)General Mills, Kannapolis, NC W540: Oats Progress in Oat FISHIS and Chromosome Specific Sequencing

Debora Giorgi1, Anna Farina1, Tim Langdon2, Matthew Hegarty2, Maciej Bisaga2 and Sergio Lucretti1, (1)ENEA - Italian Agency for New Technologies, Rome, Italy, (2)IBERS, Aberystwyth University, Aberystwyth, United Kingdom W541: Oats Local GBS Haplotypes in Hexaploid Oat: How and Why?

Wubishet Abebe Bekele, Agriculture and Agri-Food Canada, ECORC, Ottawa, ON, Canada and Nicholas A Tinker, Agriculture and Agri-Food Canada, Ottawa, ON, Canada W542: Organellar Genetics Predicting and Verifying Binding Sites for Pentatricopeptide Repeat (PPR) Proteins

Ian Small, The University of Western Australia, Crawley, WA, Australia

W543: Organellar Genetics The Mitochondrial Genome Evolution of the Geranium Family: Elevated Substitution Rates Decrease Genomic Complexity

Felix Grewe1, Emily A Gubbels2 and Jeffrey P Mower2, (1)The Field Museum of Natural History, Chicago, IL, (2)University of Nebraska-Lincoln, Lincoln, NE W544: Organellar Genetics Understanding the Role of Cytoplasmic Genomes in Stress Tolerance in Wheat

Marisa Elena Miller, University of Minnesota/USDA-ARS, St Paul, MN, Katie L Liberatore, USDA-ARS Cereal Disease Laboratory, St Paul, MN and Shahryar F Kianian, USDA ARS, Saint Paul, MN W545: Organellar Genetics The Mosaic Mutants of Cucumber: A Method to Produce Mitochondrial Knock-Downs

Angel Del Valle Echevarria, University of Wisconsin-Madison, Madison, WI, Grzegorz Bartoszewski, Warsaw University of Life Sciences, Warsaw, Poland and Michael J Havey, USDA-ARS and University of Wisconsin, Madison, WI W546: Ornamentals EST-SSR Development and Validation in Azalea Breeding Populations from Whole Transcriptome Sequencing

Alexander Quentin Susko, University of Minnesota, St Paul, MN

W547: Ornamentals Wide Cross-Transferability of SSR Loci from Three Viburnum Species

Deborah Dean1, Timothy A Rinehart2, William Klingeman3, Bonnie Ownley4, Denita Hadziabdic4, Phillip Wadl5, Dennis Gray6 and Robert N Trigiano7, (1)Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, (2)USDA-ARS Southern Horticultural Laboratory, Poplarville, MS, (3)University or Tennessee, Knoxville, TN, (4)University of Tennessee, Knoxville, TN, (5)Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, (6)University of Florida, Apopka, FL, (7)University of Tennessee Dept of Entomology and Plant Pathology, Knoxville, TN W548: Ornamentals Ambient Temperature Enhanced Freezing Tolerance of Chrysanthemum dichrum CdICE1 Overexpressing Arabidopsis via miR398

Sumei Chen and Fadi Chen, Nanjing Agricultural University, Nanjing, China W549: Ornamentals Genetic Introgression from Horticultural Varieties to Wild Species in Japanese Evergreen Azalea

Takashi Handa, School of Agriculture, Meiji University, Kawasaki, Japan W550: Ornamentals Genome Size and Chromosome Number Variation Among Caladium Species and Somaclonal Variants

Zhe Cao1, Shunzhao Sui2 and Zhanao Deng1, (1)University of Florida, Wimauma, FL, (2)Southwest University, Chongqing, China

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W551: Ornamentals Multi-Pathotype Resistance to Black Spot in Roses Conferred By the Rdr1 R-Gene-Family

Thomas Debener, Leibniz University of Hannover, Hannover, Germany W552: Palm Genomics & Genetics A Story of Flasks and Flowers: New Perspectives in the Search for Markers of the Mantled Somaclonal Variation of Oil Palm

Estelle Jaligot1, Wei Yeng Hooi2, Frédérique Richaud1, Mawussé DT Agbessi3, Yen Yen Kwan4, Thierry Beulé3, Myriam Collin3, Emilie Debladis5, François Sabot3, Olivier Garsmeur6, Angélique D’Hont7, Sharifah Shahrul Rabiah Syed Alwee8 and Alain Rival1, (1)CIRAD, UMR DIADE, MONTPELLIER, France, (2)FELDA - CIRAD, MONTPELLIER, France, (3)UMR DIADE, Montpellier, France, (4)Felda Global Ventures Research and Development Sdn Bhd, Bandar Enstek, Malaysia, (5)IRD, UMR DIADE, MONTPELLIER, France, (6)CIRAD, UMR AGAP, Montpellier, France, (7)UMR AGAP, Montpellier, France, (8)FELDA Biotechnology Centre, Bandar Enstek, Malaysia W553: Palm Genomics & Genetics Genomic Characterization of E oleifera Polymorphic Sites Based on Physical Mapping to the E guineensis Genome

Jaire A F Filho1, Eduardo Fernandes Formighieri2, Manoel Teixeira Souza Junior2 and Alexandre Alonso Alves2, (1)Embrapa Agroenergy, Brasilia, Brazil, (2)Embrapa Agroenergy, Brasília, Brazil

W554: Palm Genomics & Genetics Genomic Selection for Heterosis without Dominance in Multiplicative Traits: Case Study of Bunch Production in Oil Palm

David Cros1, Marie Denis1, Jean-Marc Bouvet1 and Leopoldo Sanchez2, (1)CIRAD, MONTPELLIER, France, (2)INRA, ORLEANS, France W555: Palm Genomics & Genetics Genome-Wide Association Study of Oil Palm Mesocarp Oil Yield Content and Its Application for Marker Selection

Chee-Keng Teh, Sime Darby Technology Centre Sdn Bhd, Serdang, Malaysia W556: Palm Genomics & Genetics The Identification of the Fruit Colour Gene of Oil Palm and Its Implications in Improving Palm Oil Yield

Rajinder Singh1, Eng-Ti L Low1, Leslie Cheng-Li Ooi1, Meilina Ong Abdullah1, Rajanaidu Nookiah1, Ngoot-Chin Ting1, Mohamad Arif Abdul Manaf1, Jayanthi Nagappan1, Muhammad Arief Budiman2, Nathan Lakey2, Blaire Bacher2, Andrew Van Brunt2, Steven W Smith2, Jared Ordway2, Rob Martienssen3 and Ravigadevi Sambanthamurthi1, (1)Malaysian Palm Oil Board, Selangor, Malaysia, (2)Orion Genomics LLC, St Louis, MO, (3)HHMI-GBMF Cold Spring Harbor Laboratory, Cold Spring Harbor, NY

W557: Palm Genomics & Genetics Identification and Development of New Polymorphic Microsatellite Markers for Main Causal Agent of Oil Palm Basal Stem Rot Disease using Ganoderma boninense Genome Assembly

Maxime Mercière1, Anthony Laybats2, Cathy Carasco-Lacombe2, Joon Sheong Tan3, Christophe Klopp4, Tristan Durand-Gasselin5, Sharifah Shahrul Rabiah Syed Alwee6, Létizia Camus-Kulandaivelu2 and Fréderic Breton2, (1)Cirad, Montpellier, France, (2)CIRAD, Montpellier, France, (3)Felda Global Ventures Research and Development Sdn Bhd, Negeri Sembilan, Malaysia, (4)INRA - SIGENAE, Castanet Tolosan, France, (5)PalmElit SA, Montferrier/Lez, France, (6)FELDA Biotechnology Centre, Bandar Enstek, Malaysia W558: Palm Genomics & Genetics Phylogeny and Historical Biogeography of the Cocosoid Palms (Arecaceae, Arecoideae, Cocoseae) Inferred from Sequences of Six WRKY Gene Family Loci

Alan W Meerow1, Larry Noblick2, Dayana E Salas-Leiva3, Vanessa Sanchez4, Javier Francisco-Ortega5, Brett Jestrow5 and Kyoko Nakamura4, (1)USDA, ARS, SHRS, Miami, FL, (2)Montgomery Botanical Center, Miami, FL, (3)Dept Biological Sciences Florida International University, Miami, FL, (4)USDA-ARS-SHRS, Miami, FL, (5)Kushlan Tropical Science Institute, Fairchild Tropical Botanic Garden, Coral Gables, FL

W559: Palm Genomics & Genetics Ancient Population Structure in Phoenix dactylifera Revealed By Genome-Wide Genotyping of Geographically Diverse Date Palm Cultivars

Lisa Sara Mathew1, Michael Seidel2, Manuel Spannagl3, Maria Fernanda Torres1, Robert R Krueger4, Georg Haberer5, Klaus FX Mayer6, Karsten Suhre1, Yasmin A Mohamoud1 and Joel A Malek7, (1)WCMC-Qatar, Doha, Qatar, (2)Helmholtz Zentrum München, Institute of Bioinformatics and Systems Biology / MIPS, Neuherberg, Germany, (3)Institute of Bioinformatics & Systems Biology, MIPS, Neuherberg, Germany, (4)USDA-ARS National Clonal Germplasm Repository for Citrus & Dates, RIVERSIDE, CA, (5)Helmholtz Zentrum München, Munich, Germany, (6)Plant Genome and Systems Biology, Helmholtz Center Munich, Neuherberg, Germany, (7)Weill Cornell Medical College in Qatar, Qatar, Qatar W560: Palm Genomics & Genetics National Date Palm Germplasm Repository

Robert R Krueger, USDA-ARS National Clonal Germplasm Repository for Citrus & Dates, RIVERSIDE, CA W561: Palm Genomics & Genetics Sustainable and Genomics Approaches for Date Palm Improvement to Biotic and Abiotic Stresses

Osman Radwan, University of Illinois at Urbana-Champaign, Urbana, IL and Fatima Al-Naemi, College of Arts and Sciences, Qatar University, Doha, Qatar

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W562: Perennial Grasses Genetic Engineering of Perennial Grasses: Trait Modification, Transgene Containment and Gene Discovery in Turf Species

Hong Luo, Clemson University, Clemson, SC W563: Perennial Grasses Genomics and Breeding of Miscanthus

Erik J Sacks1, Lindsay V Clark2, Joe E Brummer3, Katarzyna Glowaca4, Megan Hall5, Kweon Heo6, Siyao Liu7, Junhua Peng8, Shailendra Sharma7, Shiveta Sharma1, Toshihiko Yamada9, Ji Hye Yoo6, Chang Yeon Yu6, Hua Zhao10 and Stephen Long2, (1)Energy Biosciences Institute, University of Illinois, Urbana, IL, (2)University of Illinois, Urbana-Champaign, Urbana, IL, (3)Colorado State University, Fort Collins, CO, (4)University of Illinois Urbana-Champaign, Urbana, IL, (5)Bio Architecture Lab, Berkeley, CA, (6)Kangwon National University, Chuncheon, South Korea, (7)University of Illinois, Urbana, IL, (8)Huazhong Agricultural University, Wuhan, Hubei, China, (9)Hokkaido University, Sapporo, Hokkaido, Japan, (10)Huazhong Agricultural University, Wuhan, China W564: Perennial Grasses An Association Mapping Approach on Cell Wall Digestibility and Plant Architecture Gives Insight in Yield, Persistency and Forage Quality in Perennial Ryegrasses

Hilde Muylle1, Tom Ruttink1, Frederik van Parijs1, Sabine Van Glabeke1, Elisabeth Veeckman2, Annelies Haegeman1, Stephen Byrne3, Torben Asp4 and Isabel Roldan-Ruiz1, (1)ILVO-Plant Sciences Unit-Growth and Development, Melle, Belgium, (2)ILVO-Plant Sciences Unit-Growth and Development, Melle, Belgium, (3)Aarhus University, Slagelse, Denmark, (4)Molecular Biology and Genetics, Aarhus University, Slagelse, Denmark

W565: Perennial Grasses Genome-Wide Association Study Based on Multiple Imputation with Low-Depth Sequencing Data: Application to Biofuel Traits in Reed Canarygrass

Guillaume P Ramstein, University of Wisconsin-Madison, Madison, WI W566: Perennial Grasses Expanding the Breeder's Toolbox: Use of the Model Perennial Grass Brachypodium sylvaticum to Study Abiotic Stress and to Develop Biotechnological Tools for Switchgrass Improvement

Ray Collier1, Maureen Daley2, Sean Gordon3, Richard Bryan Hernandez2, María Reguera2, Nir Sade2, Matthew Wright2, Sangwoong Yoon1, Eduardo Blumwald2, Christian Tobias1, John Vogel3 and Roger Thilmony1, (1)USDA-ARS, Albany, CA, (2)Dept of Plant Sciences, University of California, Davis, CA, (3)DOE Joint Genome Institute, Walnut Creek, CA W567: Perennial Grasses Detecting Genetic Associations with Phenology in Switchgrass Using Exome-Capture

Paul Grabowski1, Joseph Evans2, Chris Daum3, Govindarajan Kunde-Ramamoorthy3, Shweta Deshpande3, Kerrie W Barry3, Guillaume P Ramstein4, Emily Crisovan2, Brieanne Vaillancourt2, Jerome Cherney5, Denise Costich6, Edward S Buckler7, Shawn Kaeppler4, C Robin Buell2, Yiwei Jiang8 and Michael Casler1, (1)USDA-ARS, Madison, WI, (2)Michigan State University, East Lansing, MI, (3)DOE Joint Genome Institute, Walnut Creek, CA, (4)University of Wisconsin-Madison, Madison, WI, (5)Cornell University, Ithaca, NY, (6)Centro Internacional de Mejoramiento de Maíz y Trigo (CIMMYT), Mexico City, Mexico, (7)Institute for Genomic Diversity, Cornell University, Ithaca, NY, (8)Purdue University, West Lafayette, IN

W568: Pine Genome Reference Sequence A Reference Genome Sequence for Sugar Pine

Kristian Stevens1, Jill Wegrzyn2, Marc Crepeau3, Daniela Puiu4, Aleksey Zimin5, Charis Cardeno1, Ann Holtz-Morris6, Maxim Koriabine6, Pedro J Martínez-García7, Pieter J deJong6, James A Yorke8, Steven L Salzberg4, Charles H Langley3 and David Neale9, (1)University of California, Davis, Davis, CA, (2)University of Connecticut, Storrs, CT, (3)Department of Evolution and Ecology, University of California, Davis, Davis, CA, (4)Johns Hopkins University, School of Medicine, Baltimore, MD, (5)Institute for Physical Science and Technology, University of Maryland, College Park, MD, (6)Children's Hospital Oakland Research Institute, Oakland, CA, (7)Department of Plant Sciences University of California, Davis, CA, (8)University of Maryland, College Park, MD, (9)Dept Plant Sciences University of California, Davis, CA

W569: Pine Genome Reference Sequence Sugar Pine Annotation

Jill Wegrzyn1, Kristian Stevens2, Robin Paul3, Daniel Gonzalez-Ibeas3, Pedro J Martínez-García4, John Liechty5, Hans Vasquez-Gross6, Sowmya Kuruganti3, Emily Grau7, Carol Loopstra8, Aleksey Zimin9, James A Yorke10, Marc Crepeau11, Daniela Puiu12, Carson Holt13, Mark Yandell14, Steven L Salzberg12, Pieter J deJong15, Keithanne Mockaitis16, Dorrie Main17, Charles H Langley11 and David Neale18, (1)Department of Ecology and Evolutionary Biology - University of Connecticut, Storrs, CT, (2)University of California, Davis, Davis, CA, (3)Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, (4)Department of Plant Sciences University of California, Davis, CA, (5)Department of Plant Sciences, University of California, Davis, Davis, CA, (6)University of California Davis, Davis, CA, (7)UC Davis, Davis, CA, (8)Texas A&M University, College Station, TX, (9)Institute for Physical Science and Technology, University of Maryland, College Park, MD, (10)Institute for Physical Science and Technology and Departments of Mathematics and Physics, University of Maryland, College Park, MD, (11)Department of Evolution and Ecology, University of California, Davis, Davis, CA, (12)Johns Hopkins University, School of Medicine, Baltimore, MD, (13)University of Utah, Salt Lake City, UT, (14)USTAR Center for Genetic Discovery, University of Utah, Salt Lake City, UT, (15)Children's Hospital Oakland Research Institute, Oakland, CA, (16)Department of Biology, Indiana University, Bloomington, IN, (17)Washington State University, Pullman, WA, (18)Dept Plant Sciences University of California, Davis, CA W570: Pine Genome Reference Sequence Loblolly Pine Genome v20

Aleksey Zimin, Institute for Physical Science and Technology, University of Maryland, College Park, MD

182

W571: Pine Genome Reference Sequence GenSAS

Dorrie Main1, Stephen P Ficklin1, Taein Lee2, Jodi L Humann1, Chun-Huai Cheng1, Jill Wegrzyn3 and David Neale4, (1)Washington State University, Pullman, WA, (2)WSU, Pullman, WA, (3)University of Connecticut, Storrs, CT, (4)Dept Plant Sciences University of California, Davis, CA W572: Pine Genome Reference Sequence Genomics and Reciprocal Illumination: The Study of Local Adaptation Across an Understudied Clade of Pines

Andrew J Eckert, Virginia Commonwealth University, Richmond, VA W573: Pine Genome Reference Sequence The Alluring Simplicity and Complex Reality of Adaptation to Climate in Lodgepole Pine

Sally N Aitken1, Sam Yeaman1, Kathryn A Hodgins2, Katie Lotterhos3, Haktan Suren4, Kristin Nurkowski5, Jason Holliday4, Loren H Rieseberg1, Andreas Hamann6 and Michael C Whitlock1, (1)University of British Columbia, Vancouver, BC, Canada, (2)Monash University, Clayton, Australia, (3)Wake Forest University, Winston-Salem, NC, (4)Virginia Tech University, Blacksburg, VA, (5)Monash University, Melbourne, Australia, (6)University of Alberta, Edmonton, AB, Canada W574: Plant and Animal Paleogenomics Key Aspects of the Plant Genomes

Gerald A Tuskan, Oak Ridge National Laboratory, Oak Ridge, TN

W575: Plant and Animal Paleogenomics Copy Number Variation in Livestock and Companion Animals: A Window to Domestication and Other Evolutionary Processes

Marcel Amills, Center for Research in Agricultural Genomics, BARCELONA, Spain W576: Plant and Animal Paleogenomics Dosage Sensitive Genes in Evolution and Disease

Aoife McLysaght, Smurfit Institute of Genetics, Dublin, Ireland W577: Plant and Animal Paleogenomics Genic GC3 Content and DNA Methylation Patterns in Plant and Animal Genomes’

Matteo Pellegrini, University of California, Los Angeles, Los Angeles, CA W578: Plant and Animal Paleogenomics Conserved and Divergent Features of Land Plant miRNAs and Endogenous siRNAs

Michael Axtell, Penn State University, University Park, PA W579: Plant and Animal Paleogenomics Major Trends in Genome Evolution of Crucifers

Martin A Lysak, CEITEC, Masaryk University, Brno, Czech Republic

W580: Plant Chromosome Biology Construction and Applications of Engineered Minichromosomes in Plants

James A Birchler, University of Missouri, Columbia, MO W581: Plant Chromosome Biology Maize siRNAs are Associated with Euchromatin-like Environments that have High Accessibility and Relatively Low H3K9me2

Jonathan I Gent1, Thelma F Madzima2, Rechian Bader3, Matthew R Kent1, Xiaoyu Zhang1, Maike Stam3, Karen M McGinnis2 and R Kelly Dawe1, (1)University of Georgia, Athens, GA, (2)Florida State University, Tallahassee, FL, (3)Universiteit van Amsterdam, Amsterdam, Netherlands W582: Plant Chromosome Biology Impacts of Maize Domestication and Breeding on Neocentromere Formation

Gernot Presting, Kevin Schneider and Zidian Xie, University of Hawaii, Honolulu, HI W583: Plant Chromosome Biology Telomere-Centric Genome Repatterning Determines Recurring Chromosome Number Reductions during the Evolution of Eukaryotes

Xiyin Wang1, Dianchuan Jin2, Zhenyi Wang2, Hui Guo3, Lan Zhang2, Li Wang2, Jingping Li4 and Andrew H Paterson1, (1)Plant Genome Mapping Laboratory, University of Georgia, Athens, GA, (2)Hebei United University, Tangshan, China, (3)University of Georgia, Athens, GA, (4)Plant Genome Mapping Lab - University of Georgia, Athens, GA

W584: Plant Chromosome Biology Regulation of Meiotic Chromosome Condensation Progression by the Arabidopsis MMD1 Protein and Its Interacting Protein

Jun Wang, Baixiao Niu, Jiyue Huang, Juanying Ye, Yingxiang Wang and Hong Ma, State Key Lab of Genet Eng, Sch of Life Sci, Fudan Univ, Shanghai, China W585: Plant Chromosome Biology Sequential De Novo Centromere Formation and Inactivation on a Chromosomal Fragment in Maize

Yalin Liu, Institute of Genetics and Developmental Biology, Beijing, China, Handong Su, Institute of Genetics and Developmental Biology, Beijing, China, Junling Pang, institute of genetics and developmental biology, beijing, China, Zhi Gao, University of Missouri-Columbia, Columbia, MO, Xiu-Jie Wang, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, beijing, China, James A Birchler, University of Missouri, Columbia, MO and Fangpu Han, Chinese Academy of Sciences, Beijing, China W586: Plant Cytogenetics How Can We Use Plant Cytogenetics to Solve Problems in Practical Plant Breeding?

Steve Barnes, SESVANDERHAVE NV, Tienen, Belgium W587: Plant Cytogenetics Function of DNA Synthesis Factors in Meiotic Recombination

Jiyue Huang, Zhihao Cheng, Cong Wang, Yue Hong, Rongyan Xu, Hang Su, Yingxiang Wang and Hong Ma, State Key Lab of Genet Eng, Sch of Life Sci, Fudan Univ, Shanghai, China

183

W588: Plant Cytogenetics Effect of the Boy-Named Sue Locus on Polyploid Meiosis in Arabidopsis

Isabelle M Henry1, Brian P Dilkes2, Jian Gao1 and Luca Comai1, (1)Plant Biology and Genome Center, UC Davis, Davis, CA, (2)Purdue University, West Lafayette, IN W589: Plant Cytogenetics Challenging Our View on Meiosis - Luzula elegans, a Plant with a Holocentric Chromosome Structure, Shows Alternative Meiotic Chromatid Segregation

Stefan Heckmann1, Maja Jankowska2, Veit Schubert2, Katrin Kumke2, Wei Ma2 and Andreas Houben2, (1)University of Birmingham - School of Biosciences, Birmingham, United Kingdom, (2)Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany W590: Plant Cytogenetics FIDGETIN-LIKE 1 Limits Non-Interfering Meiotic Crossovers, Independently of FANCM, by Regulating the Invasion Step of Homologous Recombination

Chloe Girard, INRA Centre de Versailles-Grignon, Paris, France W591: Plant Cytogenetics Repetitive DNA in Plant Genomes

Trude Schwarzacher, University of Leicester, Leicester, United Kingdom

W592: Plant Dormancy Workshop Deciphering the Integrated Regulation of Dormancy, Cold Hardiness, and Growth in Apple

Michael Wisniewski1, Timothy Artlip2 and John L Norelli1, (1)USDA-ARS, Kearneysville, WV, (2)USDA-ARS-AFRS, Kearneysville, WV W593: Plant Dormancy Workshop A RNAseq Approach to Decipher the Molecular Mechanisms Involved in Dormancy Regulation in the Fagaceae Family

Gregoire Le Provost, INRA, BIOGECO, UMR 1202, CESTAS, France, Isabelle Lesur, INRA, BIOGECO, UMR 1202, Cestas, France, Céline Noirot, Plateforme bioinformatique Genotoul, UR875UR875, Castanet-Tolosan, France, Christophe Klopp, Plateforme bioinformatique Genotoul, UR875, Castanet-Tolosan, France, Céline Lalanne, INRA, , BIOGECO, UMR 1202, Cestas, France and Christophe Plomion, INRA,BIOGECO, UMR 1202, Bordeaux, France W594: Plant Dormancy Workshop Discovery of Dormancy-Associated Genes in Populus through Activation Tagging

Victor Busov, Michigan Tech University, Houghton, MI, Yordan Yordanov, Michigan Technological University, Houghton, MI and Steven Strauss, Oregon State University, Corvallis, OR

W595: Plant Dormancy Workshop Identities and Regulatory Mechanisms of Seed Dormancy Genes Map-Based Cloned from Rice

Xingyou Gu, Jiuhuan Feng and Heng Ye, South Dakota State University, Brookings, SD W596: Plant Dormancy Workshop A Comparative Transcriptome Analysis on Growth Regulation Between Seeds and Buds of Arabidopsis

Eiji Nambara, Dept of Cell & Systems Biology, University of Toronto, Toronto, ON, Canada W597: Plant Genome Engineering Strategies for the Targeted Modification of Plant Genomes

Dan Voytas, University of Minnesota, St Paul, MN and Robert M Stupar, Department of Agronomy and Plant Genetics, University of Minnesota, St Paul, MN W598: Plant Genome Engineering Developing Genome Editing Technologies for Crop Improvement

Caixia Gao, Institute of Genetics and Developmental Biology, CAS, Beijing, China

W599: Plant Genome Engineering The CRISPR/Cas System can be used as Nuclease for in planta Gene Targeting and as Paired Nickases for Directed Mutagenesis in Arabidopsis Resulting in Heritable Progeny

Holger Puchta, Karlsruhe Institute of Technology, Karlsruhe, Germany W600: Plant Genome Engineering Highly Efficient Genome Editing in Crops

Feng Zhang1, William J Haun1, Benjamin Clasen1, Thomas Stoddard1, Zachary Demorest1, Jin Li1, Song Luo1, Dan Voytas2 and Luc Mathis1, (1)Cellectis plant sciences, New Brighton, MN, (2)University of Minnesota, St Paul, MN W601: Plant Genome Engineering A Modular Gene Targeting System for Sequential Transgene Stacking in Plants

Sandeep Kumar, Dow AgroSciences, Indianapolis, IN W602: Plant Interactions with Pests and Pathogens Designing Disease Resistant Plants

Benjamin F Matthews, USDA-ARS Soybean Genomics Lab, Beltsville, MD

184

W603: Plant Interactions with Pests and Pathogens Yr36 Confers Partial Resistance to Wheat Stripe Rust By a Novel Mechanism

Jorge Dubcovsky1, Jin-Ying Gou2, Kati Wu3, Xiaodong Wang1, Dario Cantu1, Cristobal Uauy4, Albor Dobon-Alonso5, Kentaro Inoue1, Takafumi Midorikawa1, Juan Sanchez3, Daolin Fu6, Kun Li3, Ann Blechl7, Emma Wallington8, Tzion Fahima9, Lynn Epstein3 and Madhu Meeta10, (1)University of California Davis, Davis, CA, (2)Fudan University, Shanghai, China, Shanghai, China, (3)University of California, Davis, CA, (4)John Innes Centre, Norwich, England, (5)John Innes Centre, Norfolk, England, (6)Shandong Agricultural University, Tai’an, China, (7)USDA-ARS, Albany, CA, (8)National Institute of Agricultural Botany, Cambridge, United Kingdom, (9)University of Haifa, Haifa, Israel, (10)Punjab Agricultural University, Ludhiana, Punjab, India W604: Plant Interactions with Pests and Pathogens Blackleg Resistance Gene Identification in Brassica napus: A Pan Genome Approach

Reece Tollenaere1, Salman Alamery2, Satomi Hayashi3, Philipp Emanuel Bayer3, Agnieszka Golicz4, Harsh Raman5, Boulos Chalhoub6, David Edwards7 and Jacqueline Batley8, (1)University of Queensland, St Lucia, Australia, (2)University of Queensland, St Lucia, Australia, (3)University of Queensland, Brisbane, Australia, (4)Australian Centre for Plant Functional Genomics, Brisbane, Australia, (5)Wagga Wagga Agricultural Institute, PMB, Wagga Wagga, NSW, Australia, (6)URGV-INRA, Evry, France, (7)University of Western Australia, Perth, Australia, (8)University of Western Australia, Crawley, Australia

W605: Plant Interactions with Pests and Pathogens Folic Acid Plays a Critical Role in Nonhost Resistance

Madan K Bhattacharyya, Iowa State University, Ames, IA W606: Plant Interactions with Pests and Pathogens APIP10 Is a Novel E3 Ligase That Functionally Connects the Fungal Effector AvrPiz-t to Its NLR Receptor Piz-t in Rice

Chan Ho Park1, Gautam Shirsekar1, Maria Bellizzi1, Songbiao Chen2, Pattavipha Songkumarn1, Yuese Ning3, Bo Zhou4 and Guo-Liang Wang1, (1)The Ohio State University, Columbus, OH, (2)Fujian Academy of Agricultural Sciences, Fujian, China, (3)Chinese Academy of Agricultural Sciences, Beijing, China, (4)International Rice Research Institute, Metro Manila, Philippines W607: Plant Interactions with Pests and Pathogens Broadly Conserved Fungal Effector BEC1019 Suppresses Host Cell Death and Enhances Virulence of Powdery Mildew in Barley (Hordeum vulgare L)

Roger Wise1, Priyanka Surana2, Ehren Whigham3, Shan Qi4, Antony V E Chapman2, Divya Mistry2, Ruo Xu5, Greg Fuerst1, Clara Pliego6, Laurence Bindschedler7, Pietro Spanu8, Julie Dickerson2, Roger W Innes9, Dan Nettleton2 and Adam Bogdanove4, (1)USDA-ARS, Iowa State University, Ames, IA, (2)Iowa State University, Ames, IA, (3)Roosevelt High School, Des Moines, IA, (4)Cornell University, Ithaca, NY, (5)Google, Inc, Mountain View, CA, (6)Instituto Andaluz de Investigación y Formación Agraria y Pesquera, Málaga, Spain, (7)Royal Holloway University of London (RHUL), London, United Kingdom, (8)Imperial College, London, United Kingdom, (9)Indiana University, Bloomington, IN

W608: Plant Phenotypes Precision Phenotyping in Plant Breeding

Tobias Wuerschum, State Plant Breeding Institute, University of Hohenheim, Stuttgart, Germany W609: Plant Phenotypes HIGH-THROUGHPUT PHENOTYPING – Easing the Genomics-to-Cultivar Bottleneck

Edwin Reidel, LemnaTec, Portland, OR W610: Plant Phenotypes Phenotypes as an Organizing Principle at SoyBase and LegumeInfo Databases

Rex Nelson, USDA-ARS-CICGRU, Ames, IA W611: Plant Phenotypes QTL Data Standards at PeanutBase and LegumeInfo

Ethalinda Cannon, Iowa State University, Ames, IA W612: Plant Phenotypes Curating Maize Diversity: Plant Trait Ontology Annotations for GWAS and QTL Data

Laurel Cooper, Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR

W613: Plant Phenotypes An Ontology Approach to Comparative Phenomics in Plants

Lisa Harper1, Anika Oellrich2, Ramona Walls3, Ethalinda Cannon4, Steven B Cannon5, Laurel Cooper6, Jack Gardiner4, Georgios Gkoutos7, Mingze He4, Robert Hoehndorf8, Pankaj Jaiswal6, Johnny Lloyd9, Scott R Kalberer5, David Meinke10, Naama Menda11, Laura Moore12, Rex Nelson5, Anuradha Pujar13, Carolyn J Lawrence4 and Eva Huala14, (1)USDA ARS, Albany, CA, (2)Wellcome Trust Sanger Institute, Hinxton, United Kingdom, (3)The iPlant Collaborative, Tucson, AZ, (4)Iowa State University, Ames, IA, (5)USDA-ARS-CICGRU, Ames, IA, (6)Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR, (7)Computer Science Department, Aberystwyth University, Aberystwyth, United Kingdom, (8)King Abdullah University of Science & Technology, Thuwal, Saudi Arabia, (9)Michigan State University, East Lansing, MI, (10)Oklahoma State University, Stillwater, OK, (11)Boyce Thompson Institute for Plant Research, Ithaca, NY, (12)Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, (13)Cornell University, Ithaca, NY, (14)Phoenix Bioinformatics, Redwood City, CA W614: Plant Reproductive Genomics Welcome

Jim Leebens-Mack, University of Georgia, Athens, GA W615: Plant Reproductive Genomics Meristem Maturation and Flower Production in the Solanaceae

Soon Ju Park1, Ke Jiang1, Zachary Lemmon1, Sarika Gupta2, Joyce Van Eck2, Michael Schatz1 and Zach Lippman1, (1)Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, (2)The Boyce Thompson Institute, Ithaca, NY

185

W616: Plant Reproductive Genomics Sequencing Output at Work - Resolving Carpel Gene Origins

Kai C Pfannebecker, Matthias Lange and Annette Becker, Justus-Liebig-University, Gießen, Germany W617: Plant Reproductive Genomics Developmental Genetics of Pollinator-Associated Floral Traits

Yaowu Yuan, The University of Connecticut, Storrs, CT W618: Plant Reproductive Genomics Evolution of Phase-Biased Gene Expression in Land Plants

Péter Szövényi1, Joshua P Der2, Mariana Ricca1, Claude dePamphilis2, Kentaro K Shimizu3, Andreas Wagner1 and Dietmar Quandt4, (1)University of Zurich, Zurich, Switzerland, (2)Penn State University, University Park, PA, (3)IEU, University Zurich, Zurich, Switzerland, (4)Nees Institute for Biodiversity of Plants, University Bonn, Bonn, Germany W619: Plant Reproductive Genomics Genetic Conflict and the Evolution of Sporophyte-Specific Gene Expression in Ceratodon purpureus

Stuart McDaniel, University of Florida, Gainesville, FL W620: Plant Reproductive Genomics The Origin and Evolution of Dioecy and Sex Chromosomes in Asparagus

Alex Harkess, Department of Plant Biology, University of Georgia, Athens GA, GA and Jim Leebens-Mack, University of Georgia, Athens, GA

W621: Plant Transgene Genetics Comparison of Genomic Structural Variation Associated with Cultivars, Mutagenized, and Transgenic Soybean Plants

Robert M Stupar1, Justin E Anderson2, Jean-Michel Michno2 and Adrian O Stec3, (1)Department of Agronomy and Plant Genetics, University of Minnesota, St Paul, MN, (2)University of Minnesota, St Paul, MN, (3)University of Minnesota, Saint Paul, MN W622: Plant Transgene Genetics Transient and Stable Heterologous Transgene Expression to Investigate the Mechanism of Sex Determination in Persimmon

Isabelle M Henry1, Takashi Akagi2, Ryutaro Tao2 and Luca Comai1, (1)Plant Biology and Genome Center, UC Davis, Davis, CA, (2)Kyoto University, Kyoto, Japan W623: Plant Transgene Genetics Towards the Production of a Margarine Type Vegetable Oil in Soybean

Tom Clemente, Ed Cahoon, Hanh Nguyen and Hyunwoo Park, University of Nebraska, Lincoln, NE W624: Plant Transgene Genetics In-Depth Characterization of Transgenic Events Carrying Targeted Insertions at the Maize ZmIPK1 Locus

Tristan Coram, Dow AgroSciences, Indianapolis, IN

W625: Plant Transgene Genetics Transformation Efficiency, Transgene Integration Complexity and Expression Stability Following Biolistic or Agrobacterium-mediated Transformation of Sugarcane

Hao Wu1, Aloisio Vilarinho1, Faisal Saeed Awan1, Qianchun Zeng1, Baskaran Kannan1, Tenisha Phipps1, Jamie McCuiston2, Wenling Wang2, Kerry Caffall2 and Fredy Altpeter1, (1)University of Florida - IFAS, Gainesville, FL, (2)Syngenta Biotechnology Inc, Durham, NC W626: Plant Transgene Genetics MicroRNA Regulation of Auxin-Cytokinin Balance during Soybean Nodule Development

Senthil Subramanian, Narasimha R Nizampatnam, Spencer Schreier and Suresh Damodaran, South Dakota State University, Brookings, SD W627: Polyploidy Interplay of Polyploid- and Tandem-Derived Gene Duplicates in Chemical Defense and Pathogen Recognition

M Eric Schranz, Wageningen University and Research, Wageningen, Netherlands and Johannes A Hofberger, Wageningen University, WAGENINGEN, Netherlands W628: Polyploidy Epigenetic Regulation of Duplicated Genes Involving Spreading of DNA Methylation in Legumes

Kyung Do Kim, Moaine El Baidouri and Scott A Jackson, University of Georgia, Athens, GA

W629: Polyploidy The Role That Transposable Elements May Play in Differential Expression Levels of Maize Paralogs

Damon Lisch, Purdue University, West Lafayette, IN, Margaret R Woodhouse, University of California, Berkeley, Berkeley, CA, CA, Jie Xu, Sichuan Agricultural University & UC Berkeley, Berkeley, CA and Michael R Freeling, University of California, Berkeley, CA W630: Polyploidy Subfunctionalization and Nonfunctionalization, Revisited

Michael R Freeling, University of California, Berkeley, CA W631: Polyploidy Evolution of Duplicated Pathways in Networks in Allopolyploid Cotton

Corrinne E Grover, Joseph P Gallagher and Jonathan F Wendel, Iowa State University, Ames, IA W632: Polyploidy The Role of Gene and Genome Duplications in Network Evolution

Patrick Edger1, Michael R Freeling1, Diane Burgess1, Gavin Conant2 and J Chris Pires3, (1)University of California, Berkeley, CA, (2)Division of Animal Sciences, University of Missouri, Columbia, MO, (3)University of Missouri, Columbia, MO

186

W633: Population and Conservation Genomics Sexual Selection and Rates of Molecular Evolution in Flowering Plants

Loren H Rieseberg1, Kate Ostevik1, Xing Fan2 and Daniel Ortiz-Barrientos3, (1)University of British Columbia, Vancouver, BC, Canada, (2)Sichuan Agricultural University, Chengdu, China, (3)University of Queensland, Brisbane, Australia W634: Population and Conservation Genomics Genomics of Population Divergence and Species Cohesion in an Ecologically Important Species Complex

Kai N Stölting1, Margot Paris1, Cecile Meier1, Berthold Heinze2, Stefano Castiglione3, Denes Bartha4, David Macaya Sanz5, Santiago Gonzalez-Martinez5 and Christian Lexer1, (1)University of Fribourg, Fribourg, Switzerland, (2)Austrian Federal Research Centre for Forests (BFW), Vienna, Austria, (3)University of Salerno, Salerno, Italy, (4)West-Hungarian University, Sopron, Hungary, (5)Center of Forest Research, CIFOR-INIA, Madrid, Spain W635: Population and Conservation Genomics The Koala Genome Consortium - the Utilization of de novo Genome and Transcriptome Sequencing for Applied Conservation Genomics of an Iconic Australian Marsupial

Rebecca N Johnson1, Matthew Hobbs1, Zhiliang Chen2, Don J Colgan1, Mark DB Eldridge1, Andrew G King1, Adam Polkinghorne3, Marc R Wilkins2 and Peter Timms3, (1)Australian Museum Research Institute, Sydney, Australia, (2)Systems Biology Initiative, School of Biotechnology and Biomolecular Sciences,, Sydney, Australia, (3)Faculty of Science, Health, Education and Engineering,, Queensland, Australia

W636: Population and Conservation Genomics Population Bottlenecks Led to the Accumulation of Deleterious Variants in Domestic and Wild Canids

Clare Marsden, University of California, Los Angeles, Los Angeles, CA, Robert D Schnabel, Division of Animal Sciences, University of Missouri, Columbia, MO, Gary S Johnson, Department of Vet Pathobiology, University of Missouri, Columbia, MO, Robert Wayne, University of California - Los Angeles, Los Angeles, CA and Kirk E Lohmueller, University of California Los Angeles, Los Angeles, CA W637: Population and Conservation Genomics Genome-Wide Analysis of Long-Term Evolutionary Domestication in Drosophila melanogaster

Mark A Phillips1, Anthony D Long1, Lee F Greer1, Molly K Burke2, Laurence D Mueller1 and Michael R Rose1, (1)University of Calirfornia, Irvine, Irvine, CA, (2)University of Calirfornia, San Diego, La Jolla, CA W638: Population and Conservation Genomics Environmental Adaptation in Chinook Salmon (Oncorhynchus tshawytscha) throughout their Native Geographic Range

Benjamin Hecht, Andrew P Matala, Jon Hess and Shawn Narum, Columbia River Inter-Tribal Fish Commission, Hagerman, ID

W639: Population and Conservation Genomics Genetic Differentiation, Transcriptome Variation, and Local Adaptation of Dominant Prairie Grass Androspogon gerardii along the Climate Gradient of the US Midwest: Implications for Climate Change and Restoration

Loretta C Johnson1, Miranda M Gray2, Paul St Amand3, Matthew Galliart4, Susan Brown5, Jesse Poland4, Karen Garrett6, Eduard Akhunov4, Nora Bello7, Theodore Morgan8, Sara G Baer9 and Brian Maricle10, (1)Kansas state university, Manhattan, KS, (2)Cornell University, Ithaca, NY, (3)USDA-ARS-Small Grain Genotyping Lab, Manhattan, KS, (4)Kansas State University, Manhattan, KS, (5)Kansas State University, KSU Bioinformatics Center, Manhattan, KS, (6)Kansas State University, Department of Plant Pathology, Manhattan, KS, (7)Kansas State University, Department of Statistics, Manhattan, KS, (8)Kansas State University, Department of Biology, Manhattan, KS, (9)Southern Illinois University, Carbondale, IL, (10)Biology Department,, Hays, KS W640: Population and Conservation Genomics Exploring Origins, Invasion History and Genetic Diversity of Imperata cylindrica (L) P Beauv (Cogongrass) using Genotyping by Sequencing

Millie Burrell1, Alan E Pepper1, George Hodnett1, John Goolsby2, William A Overholt3, Alexis Racelis4, Rodrigo Diaz3 and Patricia E Klein5, (1)Texas A&M University, College Station, TX, (2)ARS-USDA, Edinburg, TX, (3)University of Florida, Fort Pierce, FL, (4)University of Texas Pan American, Edinburg, TX, (5)Department of Horticulture,Texas A&M University, College Station, TX

W641: Population and Conservation Genomics Higher Non-Synonymous Substitution Rates in Disease Resistance, Wood Synthesis and Stress-Responsive Genes in Clonal Varieties of Woody Biomass Species

Berthold Heinze, Renate Slunsky and Daniela Jahn, Austrian Federal Research Centre for Forests (BFW), Vienna, Austria W642: Poultry 1 Opening Remarks and Introductions

Douglas D Rhoads, University of Arkansas, Fayetteville, AR W643: Poultry 1 Vaccine Induced Differential Expressions of Mirnas at Cytolytic Stage in Chickens Resistant or Susceptible to Marek's Disease

Huanmin Zhang1, Qingmei Xie2, Shuang Chang3, Yanghua He4, Cathy Ernst5 and Jiuzhou Song4, (1)USDA ARS Avian Disease & Oncology Laboratory, East Lansing, MI, (2)South China Agricultural University, Guangzhou, China, (3)Shandong Agricultural University, Tai'an, China, (4)University of Maryland, College Park, MD, (5)Department of Animal Science, Michigan State University, East Lansing, MI W644: Poultry 1 Association of Specific Microbes with Marek’s Disease Progression

Sudeep Perumbakkam, Michigan State University, East Lansing, MI and Hans Cheng, USDA, ARS, ADOL, East Lansing, MI

187

W645: Poultry 1 MDV Vaccine Serotype and Chicken Host Genome Interactions

Mary Delany, University of California, Davis, CA W646: Poultry 1 Towards Understanding Gene Expression in Red Jungle Fowl

Fionna McCarthy1, Amanda M Cooksey1, Ken Pendarvis1, Cathy Gresham2 and Shane Burgess1, (1)University of Arizona, Tucson, AZ, (2)Mississippi State University, Starkville, MS W647: Poultry 1 Genomics of Response to Heat Stress in Chickens

Susan J Lamont, Iowa State University, Ames, IA W648: Poultry 1 AM Break

Douglas D Rhoads, University of Arkansas, Fayetteville, AR W649: Poultry 1 Genetic Architecture of Heat Stress and Disease Resistance to Newcastle Disease Virus in Chickens

Huaijun Zhou, University of California, Davis, CA

W650: Poultry 1 Influence of Selection on Genomic Accuracies of Males and Females Using Male, Female or Joint Genotypes

Ignacy Misztal, University of Georgia, Athens, GA W651: Poultry 1 Association of the Transsulfuration Pathway in Feather Follicle and Subcutaneous Tissue Development in Broiler Chickens

Jose H Vilar da Silva, Fernando Gonzalez-Ceron, Elizabeth W Howerth and Samuel E Aggrey, University of Georgia, Athens, GA W652: Poultry 1 RNA-Seq Analysis of Wooden Breast Disease: Characterizing a Novel Myopathy in Commercial Chickens through Differential Gene Expression

Marie Mutryn1, Erin Brannick1, Weixuan Fu1, William Lee2 and Behnam Abasht1, (1)Department of Animal Science, University of Delaware, Newark, DE, (2)Maple Leaf Farms, Leesburg, IN W653: Poultry 1 Adventures in Improving the Chicken Reference Genome and Transcriptome

C Titus Brown, Michigan State University, East Lansing, MI W654: Poultry 1 Lunch Break

Douglas D Rhoads, University of Arkansas, Fayetteville, AR

W655: Poultry 1 Transcriptome Profiling of the Chicken Yolk Sac during Late Embryogenesis

Eric A Wong, Virginia Tech, Blacksburg, VA, Liran Yadgary, University of North Carolina-Chapel Hill, Chapel Hill, NC and Zehava Uni, The Hebrew University, Rehovot, Israel W656: Poultry 1 Differential Transcriptome Response to Aflatoxin in the Turkey

Kent M Reed, University of Minnesota, St Paul, MN W657: Poultry 1 Sex Chromosomes Demonstrate Complex Evolutionary Trajectories Across Bird Taxa

Doris Bachtrog, University of California Berkeley, Berkeley, CA W658: Poultry 1 PM Break

Douglas D Rhoads, University of Arkansas, Fayetteville, AR W659: Poultry 1 Identification of Quantitative Trait Loci Associated with Low Sperm Mobility in the Chicken

David P Froman, Oregon State University, Corvallis, OR

W660: Poultry 1 TBD

Carl J Schmidt, University of Delaware, Newark, DE W661: Poultry 1 Viral/Host Gene Expression Profiles in Lymphoid and Feather Follicle Epithelial (FFE) Cells Infected with Marek’s Disease Virus (MDV)”

Deepali Vasoya, Roslin Institute, University of Edinburgh, Edinburgh, United Kingdom W662: Poultry 1 Specialized Antigen Presentation By Yf MHC Class I-like Molecules in Poultry Health

Marcia M Miller, Beckman Research Institute, City of Hope, Duarte, CA W663: Poultry 1 Update on NRSP8 Bioinformatics Activities

James M Reecy, Department of Animal Science, Iowa State University, Ames, IA W664: Poultry 1 Grad Student 3 Minute Talks


188

W665: Poultry 2 Non-Coding RNA Identification of Marek’s Disease in CD4+ T Cells

Jiuzhou Song, University of Maryland, College Park, MD W666: Poultry 2 Neal Jorgenson Genomics Award: RNA-Seq Based Genome-Wide Analysis of Genomic Imprinting in Chicken Lungs

Tae Hyun Kim, University of California, Davis, CA W667: Poultry 2 Update on the Chicken Genome

Wesley Warren, The Genome Institute, St Louis, MO W668: Poultry 2 Genome-Wide Pattern and Magnitude of Genetic Diversity in a Wide Range of Diverse Chicken Breeds

Steffen Weigend, Institute of Farm Animal Genetics, Friedrich Loeffler Institut, Neustadt, Germany W669: Poultry 2 Use of Allele Specific Expression to Fine Map QTL and Enhance Genomic Selection

William Muir, Purdue University, West Lafayette, IN and Hans Cheng, USDA, ARS, ADOL, East Lansing, MI

W670: Poultry 2 AM Break

Douglas D Rhoads, University of Arkansas, Fayetteville, AR W671: Poultry 2 Bioinformatic Interpretation through Upstream and Functional Analysis of Global Gene Expression Associated with Feed Efficiency in Broiler

Byung-Whi Kong, Sami Dridi and Walter Bottje, University of Arkansas, Fayetteville, AR W672: Poultry 2 Genome Analysis of a Bacterium that Causes Lameness

M Brian Couger1, Adnan Al-Rubaye2, Sohita Ojha3, Robert F Wideman3 and Douglas D Rhoads3, (1)Oklahoma State University, Stillwater, OK, (2)University of Arkansas/Fayetteville, Fayetteville, AR, (3)University of Arkansas, Fayetteville, AR W673: Poultry 2 NC1170 Business Meeting


W674: Proteomics Protein Microarray Platform for Pathogen Effectors Studies and Beyond

Shisong Ma, Dept of Plant Biology and The Genome Center, University of California Davis, Davis, CA, John McDowell, PPWS Department, Virginia Tech, Blacksburg, VA, Brett Tyler, Oregon State University, Corvallis, OR and SP Dinesh-Kumar, Department of Plant Biology and The Genome Center, University of California Davis,, Davis, CA W675: Proteomics Proteomic Analysis of Abiotic Stress in Grapevines

Paul A Haynes1, Ryan M Ghan2, Daniel W Hopper3, Grant R Cramer2, Anne Fennell4, Iniga S George5 and David CL Handler5, (1)Macquarie University, North Ryde, NSW, Australia, (2)University of Nevada, Reno, Reno, NV, (3)University of Nevada, Reno, NV, (4)South Dakota State University, Brookings, SD, (5)Macquarie University, North Ryde, Australia W676: Proteomics Phosphor-Regulation Induced Pre-mRNA Splicing via a Splicing Activator, SR45, during Flower Development

Xiao-Ning Zhang, St Bonaventure University, St Bonaventure, NY W677: Proteomics Using Proteomics in Transgenic Wheat to Assess the Effects of an RNA Interference Construct that Targets a Family of Seed Storage Proteins

Ann E Blechl1, William Vensel1, Brian S Beecher2, Charlene Tanaka1 and Susan B Altenbach1, (1)USDA-ARS, Albany, CA, (2)USDA-GIPSA, Kansas City, MO

W678: Proteomics GNPS - a Preview of the Future of Community Wide Collaboration and the Power of Social Networking in Mass Spectrometry

Mingxun Wang1, Jeremy Carver1, Vanessa Phelan1, Laura Sanchez2, Tal Luzzatto1, Neha Garg1, Pieter Dorrestein1 and Nuno F Bandeira3, (1)University of California - San Diego, San Diego, CA, (2)University of California - San Diego, La Jolla, CA, (3)University of California, San Diego, La Jolla, CA W679: Proteomics Drought Stress Research in Crops Using -Omics Approaches: mRNA Seq and Proteomics in the Spot Light

Ewaut Kissel1, Jassmine Zorilla1, Mathieu Rouard2, Rony Swennen1 and Sebastien C Carpentier1, (1)KULeuven, Leuven, Belgium, (2)Bioversity International, Montpellier, France W680: QTL Cloning The Role of Gene Duplication and Allelic Diversity in Adaptation for High Soil Boron

Peter Langridge, Australian Centre for Plant Functional Genomics, Urrbrae, Australia

189

W681: QTL Cloning Cloning a Major QTL for Dormancy in Wheat

Jose Barrero1, Colin Cavanagh2, Penghao Wang2, Stuart Stephen2, Arunas Verbyla3, Klara Verbyla3, Emma Huang3, Josquin Tibbits4, Matthew Hayden4 and Frank Gubler2, (1)CSIRO, Agriculture Flagship, Canberra, Australia, (2)CSIRO, Agriculture Flagship, Canberra, Australia, (3)CSIRO, Digital Productivity & Services Flagship, Canberra, Australia, (4)Department of Environment and Primary Industries, Bundoora, Australia W682: QTL Cloning Identifying the Function of Sorghum's Drought Tolerance Stay-Green QTL

Andrew K Borrell1, John Mullet2, Barbara George-Jaeggli3, Erik van Oosterom4, Emma Mace3, Graeme L Hammer4, Patricia E Klein5, Brock D Weers2, Yang Shanshan2 and David R Jordan1, (1)University of Queensland, Warwick, Australia, (2)Texas A&M University, College Station, TX, (3)Queensland Government, Warwick, Australia, (4)University of Queensland, Brisbane, Australia, (5)Department of Horticulture,Texas A&M University, College Station, TX W683: QTL Cloning qPC1 Functions as an Important Regulator of Protein Content and Starch in Rice Grain

Yuqing He, National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, China

W684: QTL Cloning Defining QTL Boundaries from GWAS Results

Fabien Cormier, BIOGEMMA, Chappes, France W685: QTL Cloning Molecular Mechanisms of Quantitative Genetics Revealed By Cloning and Systems Analysis of 474 Genes Controlling Fiber Length in Cotton and 1,501 Genes Controlling Grain Yield in Maize

Meiping Zhang1, Yun-Hua Liu1, Yang Zhang1, Wenwei Xu1, Seth Murray1, Wayne Smith1, Steve Hague1, Sing-Hoi Sze1, James Frelichowski2 and Hong-Bin Zhang1, (1)Texas A&M University, College Station, TX, (2)USDA-ARS, College Station, TX W686: Recombination - mechanisms The Function of the Plant Double Strand Break Initiating Proteins SPO11-1 and SPO11-2 Is Sequence and to a Certain Extent Species Specific

Thorben Sprink and Frank Hartung, Julius Kühn Institut, Quedlinburg, Germany W687: Recombination - mechanisms Histone H11, Meiotic Chromosome Axis and Recombination

Eugenio Sanchez-Moran, School of Biosciences University of Birmingham, Birmingham, United Kingdom

W688: Recombination - mechanisms Functional Interaction of DMC1 and RAD51 during Meiotic Recombination in Arabidopsis

Zhihao Cheng, Hang Su, Jiyue Huang, Yingxiang Wang and Hong Ma, State Key Lab of Genet Eng, Sch of Life Sci, Fudan Univ, Shanghai, China W689: Recombination - mechanisms Combined Fluorescent and Electron Microscopic Imaging Unveils the Specific Properties of Two Classes of Meiotic Crossovers

Lorinda Anderson1, Leslie Lohmiller1, Xiaomin Tang1, Boyd Hammond1, Lauren Bombardier1, Lindsay Shearer1, Sayantani Basu-Roy2, Olivier C Martin2 and Matthieu Falque2, (1)Colorado State University, Fort Collins, CO, (2)INRA/CNRS/Univ Paris-Sud/AgroParisTech, Gif-sur-Yvette, France W690: Recombination - mechanisms Genetic and Epigenetic Control of Arabidopsis Meiotic Recombination Hotspots

Ian R Henderson, University of Cambridge, Cambridge, England W691: Recombination - mechanisms Exploitation of the First Sequenced Wheat Chromosome (3B) to Study the Variation of the Recombination Pattern

Benoît Darrier1, Frederic Choulet1, Natasha Glover1, Catherine Feuillet1 and Pierre Sourdille2, (1)INRA GDEC, Clermont-Ferrand, France, (2)INRA UMR Genetics, Diversity & Ecophysiology of Cereals, Clermont-Ferrand, France

W692: Resources and Programs for Undergraduate Education in Genomics GameteMaker: A Genetic Mapping Simulation Program That Helps Students to Connect Mutant Phenotypes with Underlying, DNA Sequence-Based Genotypes

Scott T Woody, U Wisconsin-Madison, Madison, WI W693: Resources and Programs for Undergraduate Education in Genomics Using Students' Own DNA Sequences to Explore Human Evolution

Dave Micklos, DNA Learning Center, Cold Spring Harbor, NY W694: Resources and Programs for Undergraduate Education in Genomics Training Students in Analyzing "Big Data" : Response of Maize Seedlings to Cold

Irina Makarevitch, Hamline University, Saint Paul, MN W695: Resources and Programs for Undergraduate Education in Genomics Introducing Undergraduate Students to Gene and Genome Structure through Gene Annotation

Brent Buckner, Truman State University, Kirksville, MO W696: Resources and Programs for Undergraduate Education in Genomics Neil A Campbell Science Learning Laboratory and the Dynamic Genome Course: Models for Authentic Research Experiences in the Teaching Laboratory

James Burnette, University of California, Riverside, Riverside, CA

190

W697: Resources and Programs for Undergraduate Education in Genomics Undergraduate Genomics Research through GCAT-SEEK: The Genome Consortium for Active Teaching Using Next-Generation Sequencing

Vincent Buonaccorsi, Juniata College, Huntingdon, PA W698: Rice Functional Genomics Evolution of the Collective Oryza Genome: Development and Analysis of a Genus-Wide Genome Biology Platform to Help Solve the 9-Billion People Question

Rod A Wing, Arizona Genomics Institute, University of Arizona, Tucson, AZ W699: Rice Functional Genomics SNP-Seek: 3000 Rice Genomes for Allele Discovery

Kenneth L McNally, The International Rice Research Institute, Metro Manila, Philippines W700: Rice Functional Genomics The Roles of Strigoalctones in the Control of Rice Tillering

Dajun Sang1, Liang Jiang1, Dongqin Chen1, Xue Liu1, Ning Zhang1, Linzhou Huang1, Qian Qian2, Jiayang Li1 and Yonghong Wang1, (1)Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China, (2)China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, China

W701: Rice Functional Genomics A Closed Panicle Regulated by OsLG1 was a Selected Trait during Rice Domestication

Takashige Ishii, Kobe University, Kobe, Japan W702: Rice Functional Genomics Direct Regulation of a Mitogen-Activated Protein Kinase By a Plasma Membrane-Associated Calcium-Dependent Protein Kinase in Rice

Yinong Yang, Pennsylvania State University, University Park, PA W703: Rice Functional Genomics Insights into the Role of Differential Gene Expression on Species Origin: A Case Study on Wild Rice

Jie Guo, Lei Huang, Rong Liu, Xiao-ming Zheng, Ping-Li Liu, Yu-su Du, Zhe Cai, Fu-min Zhang and Song Ge, Institute of Botany, CAS, Beijing, China W704: Root Genomics Transcriptional Networks Reveal Different Mechanisms to Achieve Tissue-Specific Expression Patterns in the Arabidopsis Root

Erin Sparks, Duke University, Durham, NC

W705: Root Genomics Describing and Mapping ROOT Mutants in Barley

Riccardo Bovina1, Sara G Milner1, Carlos Busanello2, Valentina Talame1, Roberto Tuberosa1, Nils Stein3 and Silvio Salvi1, (1)DipSA - University of Bologna, Bologna, Italy, (2)Department of Plant Science, University Federal of Pelotas, Capão do Leão-RS, Brazil, (3)Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Stadt Seeland, Germany W706: Root Genomics Genetic Architecture of Cyst Nematode Resistance Revealed By Genome-Wide Association Study in Soybean

Tri D Vuong1, Humira Sonah2, Clinton Meinhardt2, Rupesh Deshmukh2, Suhas Kadam2, Randy Nelson3, Grover Shannon4 and Henry T Nguyen2, (1)University of Missouri & National Center for Soybean Biotechnology, Columbia, MO, (2)University of Missouri, Columbia, MO, (3)USDA ARS, Urbana, IL, (4)University of Missouri, Portageville, MO W707: Root Genomics Transcriptomic Analyses of Roots of Cereals Associated to the Nitrogen-Fixing Bacteria Azospirillum brasilense and Herbaspirillum seropedicae

Emanuel Souza, UFPR, Curitiba, Brazil W708: Root Genomics Cytokinin-Dependent Secondary Growth Determines Root Biomass in Radish (Raphanus sativus L)

Geupil Jang1, Jung-Hun Lee1, Suhyoung Park2 and Ji-Young Lee1, (1)School of Biological Sciences, Seoul National University, Seoul, South Korea, (2)National Institute of Horticultural & Herbal Science, Suwon, South Korea

W709: Root Genomics Phenotyping Wheat Root Architecture in 2D and 3D

Jonathan Atkinson1, Luzie U Wingen2, Marcus Griffiths1, Michael P Pound1, Shaunagh Keating1, Reshmi Gaju1, Larry M York1, Jacques Le Gouis3, Simon Griffiths2, John Foulkes1, Darren M Wells1, Malcolm J Bennett1, Julie King1 and Ian P King1, (1)The University of Nottingham, Leicestershire, United Kingdom, (2)John Innes Centre, Norwich, United Kingdom, (3)INRA GDEC, clermont ferrand, France W710: Sequencing Complex Genomes The International Coffea Genome13 Project: A Way to Understand the Evolutionary History of Coffea Genomes and Unlock the Potential Use of Wild Species in Breeding?

Perla Hamon, IRD UMR DIADE, Montpellier cedex 5, France W711: Sequencing Complex Genomes Evolutionary Origins and Dynamics of Octoploid Strawberry Subgenomes Revealed By Dense Targeted Capture Linkage Maps

Jacob Tennessen1, Rajanikanth Govindarajulu2, Tia-Lynn Ashman2 and Aaron Liston1, (1)Oregon State University, Corvallis, OR, (2)University of Pittsburgh, Pittsburgh, PA W712: Sequencing Complex Genomes De Novo Assembly of Plant Genomes: Hybrid Approaches for Heterogeneous NGS Data

Thiru Ramaraj, National Center for Genome Resources, Santa Fe, NM

191

W713: Sequencing Complex Genomes In Favor of a Whole-Genome Shotgun: Assembling and Anchoring the Hexaploid Bread Wheat Genome

Jarrod Chapman1, Martin Mascher2, Aydın Buluç3, Kerrie W Barry1, Evangelos Georganas4, Adam Session5, Veronika Strnadova6, Jerry Jenkins7, Sunish K Sehgal8, Leonid Oliker4, Jeremy Schmutz9, Katherine Yelick4, International Wheat Genome Sequencing Consortium Iwgsc10, Uwe Scholz11, Robbie Waugh12, Jesse Poland8, Gary J Muehlbauer13, Nils Stein14 and Daniel S Rokhsar1, (1)DOE Joint Genome Institute, Walnut Creek, CA, (2)Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany, (3)Department of Energy Joint Genome Institute, Walnut Creek, CA, (4)Lawrence Berkeley National Laboratory, Berkeley, CA, (5)University of California, Berkeley, CA, (6)Department of Computer Science, University of California, Santa Barbara, CA, (7)DOE Joint Genome Institute, Huntsville, AL, (8)Kansas State University, Manhattan, KS, (9)HudsonAlpha Institute for Biotechnology, Huntsville, AL, (10)IWGSC, Bethesda, MD, (11)Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany, (12)The James Hutton Institute, Dundee, United Kingdom, (13)Department of Plant Biology, University of Minnesota, St Paul, MN, (14)Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Stadt Seeland, Germany W714: Sequencing Complex Genomes Toward a Reference Sequence of the Gene-Rich Part of the Highly Polyploid Sugarcane Genome

Olivier Garsmeur1, Bernard Potier2, Karen S Aitken3, Paul J Berkman3, Gaëtan Droc1, Carine Charron1, Guillaume Martin1, Bandie Harrison4, Edwin van der Vossen5, Robert Henry6 and Angélique D'Hont1, (1)CIRAD, UMR AGAP, Montpellier, France, (2)South African Sugarcane Research Institute, Mount Edgecombe, South Africa, (3)CSIRO Plant Industry, St Lucia, Australia, (4)Amplicon Express, Washington, WA, (5)KeyGene, Wageningen, Netherlands, (6)University of Queensland QAAFI, Brisbane, Australia

W715: Sequencing Complex Genomes Elucidating Intra-Species Genome Complexity By Using a Novel De Novo Assembly Tool to Assemble Two Maize Inbred Lines

Nissim Yonash, NRGENE, Ness-Ziona, Israel and Guy Kol, NRGENE Ltd, Ness-Ziona, Israel W716: Sex Chromosomes and sex determination Genomic and Evolutionary Features of the Brown Alga Ectocarpus UV Sex Chromosomes

Susana M Coelho, CNRS-UPMC, Roscoff cedex, France W717: Sex Chromosomes and sex determination Ogi, a Y-Encoded Small-RNA, Acts for Sex Determination in Diospyros Plant Species

Takashi Akagi1, Isabelle Henry2, Ryutaro Tao1 and Luca Comai2, (1)Graduate School of Agriculture, Kyoto University, Kyoto, Japan, (2)Plant Biology and Genome Center, UC Davis, Davis, CA W718: Sex Chromosomes and sex determination Understanding Floral Development and Sex Expression in Dioecious Coccinia grandis

Anjan K Banerjee1, Amita G Ghadge1, Kanika Karmakar2, Ravi S Devani1 and Sangram Sinha2, (1)Indian Institute of Science Education and Research Pune (IISER Pune), Pune, India, (2)Tripura University, Suryamaninagar, India

W719: Sex Chromosomes and sex determination Population Genetics of X and Y Chromosomes in the Dioecious Plant Rumex hastatulus

Josh Hough, University of Toronto, Toronto, ON, Canada W720: Sex Chromosomes and sex determination Contrasting Mechanisms of Sex Determination in the Salicaceae

Stephen DiFazio1, Ran Zhou1, Luke Evans1, Eli Rodgers-Melnick2, Fred E Gouker3, Craig H Carlson3, Lawrence Smart3, Haibao Tang4, Vivek Krishnakumar4, Christopher D Town4 and Gerald A Tuskan5, (1)West Virginia University, Morgantown, WV, (2)Cornell University, Ithaca, NY, (3)Cornell University, Geneva, NY, (4)J Craig Venter Institute, Rockville, MD, (5)Oak Ridge National Laboratory, Oak Ridge, TN W721: Sex Chromosomes and sex determination The XY Sex Chromosome in Date Palm (Phoenix dactylifera): From Discovery and Mapping to Sequencing

Maria Fernanda Torres1, Lisa Sara Mathew1, Candice Purchase1, Yasmin A Mohamoud1 and Joel A Malek2, (1)WCMC-Qatar, Doha, Qatar, (2)Weill Cornell Medical College in Qatar, Qatar, Qatar W722: SGN Workshop: Solanaceae Genomes and Breeder Tools Introduction

Lukas Mueller, Boyce Thompson Institute for Plant Research, Ithaca, NY

W723: SGN Workshop: Solanaceae Genomes and Breeder Tools Breeder Tools

Lukas Mueller, Boyce Thompson Institute for Plant Research, Ithaca, NY W724: SGN Workshop: Solanaceae Genomes and Breeder Tools solGS: A Web-Based Tool for Genomic Selection

Isaak Y Tecle, Naama Menda and Lukas Mueller, Boyce Thompson Institute for Plant Research, Ithaca, NY W725: SGN Workshop: Solanaceae Genomes and Breeder Tools Accessing SGN Genomes through Tools

Susan R Strickler, Boyce Thompson Institute for Plant Research, Ithaca, NY W726: SGN Workshop: Solanaceae Genomes and Breeder Tools Tomato Genome Assembly: SL250 and Beyond

Surya Saha, Boyce Thompson Institute, Cornell University, Ithaca, NY W727: Small RNA Genome-Wide Analysis of microRNAs Associated with Flower Development in Rice

Dong-Hoon Jeong, Hallym University, Chuncheon, South Korea

192

W728: Small RNA Distinct Recruitment Mechanisms for Aub and Ago3 to Nuage Lead to Functional Compartmentalization of the pIRNA Pathway in Drosophila

Alexandre Webster and Alexei Aravin, California Institute of Technology, Pasadena, CA W729: Small RNA Inactivating microRNAs By Short Tandem Target Mimics and Silencing Coding Genes By Artificial microRNAs and Their Applications

Guiliang Tang and Sachin Teotia, Michigan Technological University, Houghton, MI W730: Small RNA MicroRNA Control of Immunity and Cancer

Changchun Xiao, The Scripps Research Institution, La Jolla, CA W731: Small RNA Targeting microRNAs for Destruction in Crop Plants By Short Tandem Target Mimic (STTM)

Sachin Teotia, Michigan Technological University, Houghton, MI W732: Small RNA Small RNA-Based Antiviral Defense in the Phytopathogenic Fungus Colletotrichum higginsianum

Kerri Gilbert, Sonia Campo Sánchez and James Carrington, Donald Danforth Plant Science Center, St Louis, MO

W733: Small RNA Virus-Activated siRNAs (vasiRNAs) - A Novel Class of Arabidopsis Endogenous siRNAs Induced by Virus Infection

Shou-Wei Ding, University of California, Riverside, Riverside, CA W734: Solanaceae Identification of Sterol Side Chain Reductase 2 (SSR2), a Key Enzyme in the Biosynthesis of Cholesterol As the Common Precursor of Toxic Steroidal Glycoalkaloids in Potato

Kazuki Saito1, Satoru Sawai1, Kiyoshi Ohyama2, Shuhei Yasumoto3, Hikaru Seki3, Tetsushi Sakuma4, Takashi Yamamoto4, Yumiko Takebayashi1, Mikiko Kojima1, Hitoshi Sakakibara1, Toshio Aoki5, Toshiya Muranaka3 and Naoyuki Umemoto6, (1)RIKEN Center for Sustainable Resource Science, Yokohama, Japan, (2)Tokyo Institute of Technology, Tokyo, Japan, (3)Osaka University, Suita, Japan, (4)Hiroshima University, Hiroshima, Japan, (5)Nihon University, Kanagawa, Japan, (6)Kirin Co, Ltd, Yokohama, Japan W735: Solanaceae Broadening the Genomic Scope for the Solanaceae: New Genome Approaches

Bjorn Usadel, Forschungzentrum Juelich & RWTH Aachen, Aachen, Germany W736: Solanaceae Potato StCDF1: A Master Regulator for Potato Tuber Development

Christian Bachem, José Abelenda, Sara Bergonzi and Richard Visser, Plant Breeding Wageningen University & Research centre, Wageningen, Netherlands, Wageningen, Netherlands

W737: Solanaceae A Collaborative Platform for Sharing and Analyzing Phenotypic Data

Yaniv Semel, Phenome Networks, Rehovot, Israel W738: Solanaceae Reinventing Potato at the Diploid Level

Shelley Jansky, USDA-ARS, Madison, WI, David Douches, Michigan State University, East Lansing, MI and Jeffrey Endelman, University of Wisconsin Department of Horticulture, Madison, WI W739: Solanaceae Transcriptional Control of Tomato Fruit Ripening Is Mediated By Diverse Positive and Negative Regulators

James Giovannoni, USDA-ARS and Boyce Thompson Institute for Plant Research, Ithaca, NY W740: Somatic Genome Cell-Type-Specific Responses to DNA Damage

Anne B Britt and Phillip Adam Conklin, University of California, Davis, CA W741: Somatic Genome A Spatiotemporal Analysis of Plant DNA Replication in Developing Root Tips

Linda Hanley-Bowdoin1, Tae-Jin Lee1, Gregg G Hoffman2, Emily E Wear1, George C Allen1, William F Thompson1 and Hank Bass2, (1)NC State University, Raleigh, NC, (2)Florida State University, Tallahassee, FL

W742: Somatic Genome Strategies for Mutation Discovery and Characterization for Plant Functional Genomics

Isabelle M Henry1, Andrew T Groover2, Matthew S Zinkgraf2, Thomas H Tai3 and Luca Comai1, (1)Plant Biology and Genome Center, UC Davis, Davis, CA, (2)US Forest Service, Davis, CA, (3)USDA-ARS, Davis, CA W743: Somatic Genome Molecular Correlates of Programmed DNA Elimination

Stephanie A Bryant, Joseph R Herdy, Vladimir Timoshevskiy and Jeramiah J Smith, University of Kentucky, Lexington, KY W744: Somatic Genome Evolution of RNA Polyadenylation Sites

Xiu-Qing Li, Agriculture and Agri-Food Canada, Fredericton, NB, Canada W745: Sorghum/Millet Introduction

Yinghua Huang, USDA ARS, Stillwater, OK

193

W746: Sorghum/Millet Genetic Analysis of Seed Nutritional Content in Tef Millet

Jeffrey L Bennetzen1, Xuewen Wang2, Greg Ziegler3, Taoran Dong1, Srini Chaluvadi1, Mark E Sorrells4, Ivan Baxter3 and Katrien M Devos1, (1)University of Georgia, Athens, GA, (2)Kunming Institute of Botany, Kunming, China, (3)USDA-ARS Plant Genetics Research Unit, St Louis, MO, (4)Cornell University, Ithaca, NY W747: Sorghum/Millet Genomic Selection of 1,000 Biomass Sorghum Accessions and Empirical Validation

Xiaoqing Yu1, Xianran Li1, Yuye Wu2, Sharon E Mitchell3, Kraig L Roozeboom2, Donghai Wang2, Rex Bernardo4, Mingli Wang5, Gary A Pederson5, Tesfaye T Tesso2 and Jianming Yu1, (1)Iowa State University, Ames, IA, (2)Kansas State University, Manhattan, KS, (3)Cornell University, Ithaca, NY, (4)University of Minnesota, St Paul, MN, (5)USDA-ARS, PGRCU, Griffin, GA W748: Sorghum/Millet Comparative Genetics of Inflorescence and Plant Height Components in Divergentcereal Lineages Represented By Sorghum (Panicoidae) and Rice (Oryzoidae)

Dong Zhang1, Andrew H Paterson2 and Wenqian Kong1, (1)University of Georgia, Athens, GA, (2)Plant Genome Mapping Laboratory, University of Georgia, Athens, GA

W749: Sorghum/Millet Dissecting Complex Traits in Sorghum with a Nested Association Mapping Population

Geoffrey Morris, Kansas State University, Manhattan, KS W750: Sorghum/Millet Potential of Multiseeded Mutant (msd) to Boost Sorghum Grain Yield

Zhanguo Xin1, Yinping Jiao2, Gloria Burow3, Doreen Ware4, John Burke3 and Chad Hayes3, (1)USDA ARS, Lubbock, TX, (2)Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, (3)USDA-ARS, Lubbock, TX, (4)Cold Spring Harbor Laboratory/USDA-ARS, Cold Spring Harbor, NY W751: Soybean Genomics Highly Variable Regions in the Soybean Genome

Matthew E Hudson, University of Illinois, Urbana, IL W752: Soybean Genomics Exploring and Exploiting Soybean Seed Transcriptome Diversity

Yong-Qiang (Charles) An, USDA-ARS, Plant Genetics Research at Donald Danforth Plant Science Center, Saint Louis, MO, Wolfgang Goettel, USDA-ARS Plant Genetics Research at Danforth Plant Science Center, Saint Louis, MO, Earl Taliercio, USDA-ARS, Soybean and Nitrogen Fixation Research, Raleigh, NC, Mingli Wang, USDA-ARS, PGRCU, Griffin, GA and Zongrang Liu, USDA-ARS, AFRS, Kearneysville, WV

W753: Soybean Genomics Comprehensive Genomic Survey of Genes Related to Domestication and Improvement in Soybeans

Zhixi Tian, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China W754: Soybean Genomics Genetic Analysis of Genomic Locations Underlying Domestication Transitions in Soybean

Soon-Chun Jeong, Korea Research Institute of Bioscience and Biotechnology, Chungbuk, South Korea W755: Soybean Genomics Evolutionary Novelty of Duplicates: Insights from a Case Study of Soybean Stem Growth Habit

Jieqing Ping1, Lianjun Sun1, Yunfeng Liu1, Meixia Zhao1, Zhixi Tian2, Hanh Nguyen3, Yinghui Li4, Lijuan Qiu4, Randy Nelson5, Thomas E Clemente3, James E Specht3 and Jianxin Ma1, (1)Purdue University, West Lafayette, IN, (2)Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China, (3)University of Nebraska, Lincoln, NE, (4)Chinese Acdemy of Agricultural Sciences, Beijing, China, (5)USDA ARS, Urbana, IL W756: Soybean Genomics Molecular Characterization of Transgenic Soybean Overexpressing the GM-RLK3

Osman Radwan, University of Illinois at Urbana-Champaign, Urbana, IL, Schuyle Korban, Uinversity of Illinois at Urbana-Champaign, Urbana, IL and Glen L Hartman, USDA-ARS, Urbana, IL

W757: Genomics of Tissue Regeneration in Plants and Animals Plant Regeneration Requires Cellular Communication

Moshe Reuveni, ARO, Volcani Center, Bet Dagan, Israel W758: Genomics of Tissue Regeneration in Plants and Animals Botryllus schlosseri, a Model Organism for the Study of Tissue Regeneration and the Evolution of Immunity

Ayelet Voskoboynik, Institute of Stem Cell Biology and Regenerative Medicine Stanford University, Pacificgrove, CA W759: Genomics of Tissue Regeneration in Plants and Animals The Trajectory of Transdifferentiating Cells in Root Regeneration

Kenneth D Birnbaum, New York University, New York, NY W760: Genomics of Tissue Regeneration in Plants and Animals Transcriptomics of Neural Regeneration in Echinoderms: A Roadmap for Future Research

Vladimir Mashanov, University of Puerto Rico, Department of Biology, Puerto Rico, PR

194

W761: Integrated Breeding Platform: Tools, Databases and Applications for Plant Breeding Overview and Progress on Developing the Integrated Breeding Platform

Graham McLaren1, Fred Okono1, Chunlin He2, Arllet Portugal3, Mark Sawkins1, Ndeye Ndack Diop1, Jean-Marcel Ribaut4, Jan Erik Backlund5, Jean Phillips6 and Rebecca Berrigan7, (1)Generation Challenge Programme, Texcoco, Mexico, (2)Generation Challenge Programme, c/o CIMMYT, Texcoco, Mexico, (3)Generation Challenge Program, Texcoco, Mexico, (4)Generation Challenge Programme, Mexico, Mexico, (5)CGIAR, Indianapolis, IN, (6)Leafnode Llc, San Francisco, CA, (7)Leafnode Llc, Mill Valley, CA W762: Integrated Breeding Platform: Tools, Databases and Applications for Plant Breeding Breeding View - Statistical Workflows for Plant Breeding

Mark Sawkins, Generation Challenge Programme, Texcoco, Mexico W763: Integrated Breeding Platform: Tools, Databases and Applications for Plant Breeding ISMU 20: A Multi-Algorithm Pipeline for Genomic Selection

Abhishek Rathore1, Roma R Das1, Manish Roorkiwal1, Dadakhalandar Doddamani1, Mohan Telluri1, David Edwards2, Mark E Sorrells3, Janez Jenko4, John Hickey4, Jean-Luc Jannink3 and Rajeev K Varshney1, (1)ICRISAT, Hyderabad, India, (2)University of Western Australia, Perth, Australia, (3)Cornell University, Ithaca, NY, (4)The University of Edinburgh, Scotland, UK, Midlothian, Scotland

W764: Integrated Breeding Platform: Tools, Databases and Applications for Plant Breeding CG Back Office : Working with IBP to Deliver High Density Genomics Tools

Susan McCouch, Cornell University, Ithaca, NY W765: Integrated Breeding Platform: Tools, Databases and Applications for Plant Breeding A Public API for Crop Breeding Data

David E Matthews, USDA ARS, Ithaca, NY W766: Integrated Breeding Platform: Tools, Databases and Applications for Plant Breeding Application of Information Systems in Collaborative Cowpea Breeding for Sub-Saharan Africa

Bao Lam Huynh1, Ndiaga Cissé2, Issa Drabo3, Ousmane Boukar4, Batieno T Benoît Joseph5,6, Rogerio Chiulele7, Ibrahim Atokple8, Francis Kusi8, Steve Wanamaker1, Timothy J Close1 and Philip A Roberts1, (1)University of California - Riverside, Riverside, CA, (2)Institut Sénégalais de Recherches Agricoles, Bambey, Senegal, (3)Institut de l'Environnement et de Recherches Agricoles, Saria, Burkina Faso, (4)International Institute of Tropical Agriculture, Ibadan, Nigeria, (5)West African centre for Crop Improvement, Legon, Ghana, (6)Institut de l'Environnement et de Recherches Agricoles, Kamboinse, Burkina Faso, (7)Eduardo Mondlane University, Maputo, Mozambique, (8)Savanna Agricultural Research Institute, Nyankpala, Ghana

W767: Leveraging Genomics Tools to Accelerate Breeding for Climate Resilience Cowpea: Putting Genomics into Practice for Food Security

Timothy J Close1, Philip A Roberts1, Stefano Lonardi1, Issa Drabo2, Batieno T Benoît Joseph3, Tignegre Jean-Baptiste De La Salle2, Ibrahim Atokple4, Francis Kusi4, Christian Fatokun5, Ousmane Boukar5, Ndiaga Cissé6, Sassoum Lo1, Mitchell R Lucas1, Hamid Mirebrahim1, Maria Muñoz-Amatriain1, Steve Wanamaker1, Savanah M St Clair1, Yi-Ning Guo1, Bao Lam Huynh1, Arsenio Daniel Ndeve1 and Jansen Rodrigo Pereira Santos1, (1)University of California, Riverside, CA, (2)Institut de l'Environnement et de Recherches Agricoles, Saria, Burkina Faso, (3)West African centre for Crop Improvement, Legon, Ghana, (4)CSIR-Savanna Agricultural Research Institute (CSIR-SARI), Tamale, Ghana, (5)International Institute of Tropical Agriculture, Ibadan, Nigeria, (6)Institut Sénégalais de Recherches Agricoles, Bambey, Senegal W768: Leveraging Genomics Tools to Accelerate Breeding for Climate Resilience Genomics-Assisted Breeding for Climate Resilience in Tropical Maize

Raman Babu, Centro International de Mejoramiento de Maiz y Trigo (CIMMYT), Greater Hyderabad, India W769: Leveraging Genomics Tools to Accelerate Breeding for Climate Resilience Engineering Drought Tolerance in Grain Crops

Eduardo Blumwald, University of California-Davis, Davis, CA

W770: Leveraging Genomics Tools to Accelerate Breeding for Climate Resilience Improving Food Security in Africa By Enhancing Resistance to Newcastle Disease and Heat Stress in Chickens: Genomics to Improve Poultry

Huaijun Zhou1, David A Bunn2, Rodrigo Gallardo3, Susan J Lamont4, Jack CM Dekkers5, Amandus Muhairwa6, Peter Msoffe6, Boniface Kayang7, Augustine Naazie7, George Aning7 and Carl J Schmidt8, (1)University of California, Davis, CA, (2)Feed the Future Innovation Lab for Genomics to Improve Poultry, Davis, CA, (3)University of California, Davis, Davis, CA, (4)Iowa State University, Ames, IA, (5)Department of Animal Science, Iowa State University, Ames, IA, (6)Sokoine University of Agriculture, Chuo Kikuu, Tanzania, (7)University of Ghana, Legon, Ghana, (8)University of Delaware, Newark, DE W771: Leveraging Genomics Tools to Accelerate Breeding for Climate Resilience Genomics Data Management: A Global Perspective

Kevin R Hayes, Pioneer Hi-Bred International, Johnston, IA W772: Plant Molecular Breeding Welcome and Opening Remarks

Yunbi Xu, CIMMYT/CAAS, Beijing, China W773: Plant Molecular Breeding The Post-Genomics Era Rice Breeding: Perspectives and Practices

Zhi-Kang Li, Institute of Crop Sciences, CAAS, Beijing, Beijing, China

195

W774: Plant Molecular Breeding Progress and Perspectives in CIMMYT Wheat Molecular Breeding

Susanne Dreisigacker1, Jose Crossa1, David Bonnett1, Deepmala Sehgal2, Karim Ammar1, Matthew Reynolds1 and Hans-Joachim Braun1, (1)CIMMYT, Mexico DF, Mexico, (2)CIMMYT, Mexico, Mexico W775: Plant Molecular Breeding Genome Wide Association Study in Maize

Jianbing Yan, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China W776: Plant Molecular Breeding Identifying FATB1a Deletion That Causes Reduced Palmitic Acid Content in Soybean N87-2122-4 to Develop a Diagnostic Marker for a High Throughput Marker-Assisted Selection

Nicole Bachleda, Anh Pham, Roger Boerma and Zenglu Li, Institute of Plant Breeding, Genetics, and Genomics, University of Georgia, Athens, GA W777: Plant Molecular Breeding Green Super Rice Breeding Technology

Jauhar Ali, PBGB, International Rice Research Institute, Metro Manila, Philippines

W778: Plant Molecular Breeding Can Genomic Selection Help Chickpea Breeding to Develop Superior Lines with Higher Yield Under Drought Stress?

Manish Roorkiwal1, Abhishek Rathore1, Roma R Das1, Muneendra Singh1, Srinivasan Samineni1, Pooran M Gaur1, Bharadwaj Chellapilla2, Shailesh Tripathi2, John Hickey3, Aaron Lorenz4, Jean-Luc Jannink5 and Rajeev K Varshney1, (1)ICRISAT, Hyderabad, India, (2)IARI, Delhi, India, (3)The University of Edinburgh, Scotland, UK, Midlothian, Scotland, (4)University of Nebraska–Lincoln, Lincoln, NE, (5)Cornell University, Ithaca, NY W779: Plant Molecular Breeding Closing Remarks

Zhi-Kang Li, Institute of Crop Sciences, CAAS, Beijing, Beijing, China W780: Plant Science at the JGI and KBase Joint Genome Institue Plant Science Program

Jeremy Schmutz1, Kerrie W Barry1, David M Goodstein1, Jane Grimwood2, Uffe Hellsten1, Jerry Jenkins2, Gerald A Tuskan3, John Vogel1, Jim Bristow1 and Daniel S Rokhsar1, (1)DOE Joint Genome Institute, Walnut Creek, CA, (2)HudsonAlpha Institute for Biotechnology, Huntsville, AL, (3)Oak Ridge National Laboratory, Oak Ridge, TN W781: Plant Science at the JGI and KBase Plant Science in KBase

Dave Weston, Oak Ridge National Laboratory, Oak Ridge, TN

W782: Plant Science at the JGI and KBase Panicum hallii: Genomics Enabled Perennial Grass Model

Thomas Juenger, University of Texas at Austin, Austin, TX W783: Plant Science at the JGI and KBase Highly Efficient Discovery of Novel Genes in the Complex Perennial Populus Using GWAS and Coexpression Analyses in KBase

Wellington Muchero, Oak Ridge National Laboratory, Oak Ridge, TN W784: Plant Science at the JGI and KBase KBase Metabolic Modeling with Sphagnum

Samuel M D Seaver1, Shengqiang Shu2, Jonathan Shaw3, Kerrie W Barry2, Jeremy Schmutz4, Jane Grimwood4 and Jerry Jenkins5, (1)Argonne National Laboratory, Argonnne, IL, (2)DOE Joint Genome Institute, Walnut Creek, CA, (3)Duke University, Durham, NC, (4)HudsonAlpha Institute for Biotechnology, Huntsville, AL, (5)DOE Joint Genome Institute, Huntsville, AL W785: Plant Science at the JGI and KBase How to Work with the JGI and KBase

John Vogel, DOE Joint Genome Institute, Walnut Creek, CA and Doreen Ware, Cold Spring Harbor Laboratory/USDA-ARS, Cold Spring Harbor, NY W786: The Analysis and Role of the Microbiome How Well Can We Reconstruct Metagenome Content? Thoughts and Data on Metagenome Assembly

C Titus Brown, Michigan State University, East Lansing, MI

W787: The Analysis and Role of the Microbiome Accurate, Multi-Kb Illumina Truseq Synthetic Reads Resolve Complex Microbial Populations and Detect Rare Microorganisms

Itai Sharon, University of California, Berkeley, Berkeley, CA W788: The Analysis and Role of the Microbiome The Microbial Proteome Associated with High Methane Emissions in Cattle Determined By Shotgun Metagenomic Sequencing

Mick Watson, The Roslin Institute and R(D)SVS, University of Edinburgh, Edinburgh, United Kingdom W789: The Analysis and Role of the Microbiome Characterization of the Bovine Nasopharyngeal Microbiome in the Context of Respiratory Disease and Treatment

Timothy PL Smith, USDA-ARS, US Meat Animal Research Center, Clay Center, NE W790: Post-transcriptional Gene Regulation Global analysis of RNA-protein interactions and RNA secondary structure in eukaryotes

Brian D Gregory, University of Pennsylvania, Philadelphia, PA W791: Post-transcriptional Gene Regulation To be Added

Klemens Hertel, University of California, Irvine, Irvine, CA

196

W792: Post-transcriptional Gene Regulation A Transformative Platform Deciphers the RNA Structural Code in Living Cells

Yiliang Ding, John Innes Centre, Norwich, United Kingdom W793: Post-transcriptional Gene Regulation To be Added

Yoseph Barash, Perleman School of Medicine, University Pennsylvania, Philadelphia, PA W794: Post-transcriptional Gene Regulation Functional Alternative Isoform Expression Analysis Using Long Read Technologies

Ana Conesa, Centro de Investigación Príncipe Felipe, Valencia, Spain W795: Speciation Genomics Sequencing of the Pedunculate Oak Genome and Contribution of Gene Expression and Single Nucleotide Polymorphisms to Speciation in the European White Oak Species Complex

Christophe Plomion1, Thibault Leroy1, Jean-Marc Aury2, Joelle Amselem3, Gregoire Le Provost1, Catherine Bodénès1, Laure Villate1, Isabelle Lesur1, Delphine Steinbach3, Hélène Bergès4, François Ehrenmann1, Karine Labadie2, Florent Murat5, Patricia Faivre Rampant6, Valerie Barbe2, Patrick Wincker2, Hadi Quesneville3, Jerome Salse5 and Antoine Kremer1, (1)INRA, Cestas, France, (2)CEA - Genoscope, Evry, France, (3)INRA - URGI, Versailles, France, (4)INRA - CNRGV, Castanet Tolosan, France, (5)INRA Clermont-Ferrand, Clermont-Ferrand, France, (6)INRA Evry, Evry, France

W796: Speciation Genomics The Fate of Chromosomes and Alleles in Brassica Allohexaploids

Annaliese S Mason1, Matthew N Nelson2, Junko Takahira2, Chhaya Atri3, Wallace A Cowling2, Gustavo Moreira Alves1, Arkaprava Chaudhuri1, Alice C Hayward1, Mohana Ragu1, Ning Chen1, Jessica Dalton-Morgan1, Frederique Eber4, Virginie Huteau4, Olivier Coriton4, Anne-Marie Chevre4 and Jacqueline Batley2, (1)University of Queensland, Brisbane, Australia, (2)The University of Western Australia, Perth, Australia, (3)Plant Breeding & Genetics Department, Punjab Agricultural University, Punjab, India, (4)Unité Mixte de Recherche Institut de Génétique, Environnement et Protection des Plantes, Institut National de la Recherche Agronomique, Le Rheu, France W797: Speciation Genomics Speciation Genomics in Plants: Divergence Continuum and Beyond

Christian Lexer1, Eligio Bossolini2, Celine Caseys3, Myriam Heuertz4, Michael Kessler5, Dorothea Lindtke6, Margot Paris1, Peter P Pearman7, Nicolas Salamin8, Kai N Stölting1, Rafael O Wüest9 and Niklaus E Zimmermann10, (1)University of Fribourg, Fribourg, Switzerland, (2)Bayer CropScience, Gent, Belgium, (3)University of British Columbia, Vancouver, BC, Canada, (4)INIA Forest Research Centre, Madrid, Spain, (5)University of Zurich, Zurich, Switzerland, (6)University of Sheffield, Sheffield, United Kingdom, (7)University of the Basque Country, Leioa, Spain, (8)University of Lausanne, Lausanne, Switzerland, (9)Univ Grenoble Alpes LECA, Grenoble, France, (10)Swiss Federal Research Institute WSL, Birmensdorf, Switzerland W798: Speciation Genomics TBA

Jenny Boughman, Michigan State University, East Lansing, MI

W799: Statistical Genomics An Empirical Bayes Method for Genome-Wide Association Studies

Qishan Wang, University of California, Riverside, Riverside, CA W800: Statistical Genomics Using Path Analysis to Reveal Novel Components of the Sex Determination Hierarchy in Drosophila melanogaster

Lauren M McIntyre, University of Florida, Gainesville, FL W801: Statistical Genomics Getting Power Back from Population Structure and Kinship in Genome-Wide Association Studies

Zhiwu Zhang, Washington State University, Pullman, WA W802: Statistical Genomics Locally Epistatic Genomic Relationship Matrices for Genomic Association and Prediction

Deniz Akdemir, Cornell University, Ithaca, NY W803: Statistical Genomics A Tutorial of Partial Least Squares Analysis

Shizhong Xu, University of California, Riverside, CA

W804: Sugar Beet Association Between SNP183 and Bolting Tendency in Sugar Beet

Chiara Broccanello1, Piergiorgio Stevanato1, Andreas Müller2, Dario Cantu3 and Massimo Saccomani1, (1)DAFNAE, Università degli Studi di Padova, Legnaro (Padova), Italy, (2)Strube Research GmbH & Co KG, Söllingen, Germany, (3)University of California Davis, Davis, CA W805: Sugar Beet Molecular Dissection and Marker Assisted Selection to Cercospora Leaf Spot in Sugar Beet

Kazunori Taguchi, Kazuyuki Okazaki, Yosuke Kuroda and Hiroyuki Takahashi, Hokkaido Agricultural Research Center, Hokkaido, Japan W806: Sugar Beet A Comparative Genomic Study of the C3 Sugar Beet and the C4 Edible Grain Amaranth

Meeta Sunil, Nivedita Hariharan, Thejas Makam Shivakumar Gupta, Arjun Sreedhar, Keerthivasan Chandradoss Raanin, Savita Karthikeyan, Bibha Choudhary and Subhashini Srinivasan, Institute of Bioinformatics and Applied Biotechnology, Bangalore, Karnataka, India W807: Sugar Beet Gene Expression Profiling of Resistance and Susceptibility to Beet Curly Top Virus in Sugarbeet

Imad Eujayl, USDA-ARS, Northwest Irrigation and Soils Res Lab, Kimberly, ID and Carl Strausbaugh, USDA-ARS-NWISRL, Kimberly, ID

197

W808: Sugar Beet Storage Root Developmental Milestones Resolved Using Complementary -Omics Approaches

Belinda Townsend1, Stephen Powers2, David Hughes3, Delia Corol4, Aiming Qi5, Rachel O'Neill6, Paul Knox7, J Mitchell McGrath8, Jane Ward4 and Keywan Hassani-Pak1, (1)Rothamsted Research, Harpenden, United Kingdom, (2)Department of Computational and Systems Biology, Rothamsted Research, Hatfield, Hertfordshire, United Kingdom, (3)Department of Computational and Systems Biology, Hatfield, Hertfordshire, United Kingdom, (4)Department of Plant Biology and Crop Science,, Harpenden, Hertfordshire, United Kingdom, (5)School of Life and Medical Sciences, Hatfield, Hertfordshire, United Kingdom, (6)Centre for Plant Sciences, Faculty of Biological Sciences, Leeds, West Yorkshire, United Kingdom, (7)Centre for Plant Sciences, Leeds, West Yorkshire, United Kingdom, (8)Sugar beet and Beans Research Unit, East Lansing, MI W809: Sugar Beet Towards a Sugar Beet Reference Genome Using Optical Mapping

Glenda Willems1, Sigrid Vanstraelen2, Alexandra Burkholz3, Aude Darracq2, Andrew G Sharpe4, Chushin Koh5 and Steve Barnes2, (1)SESVanderHave Belgium, Tienen, Belgium, (2)SESVANDERHAVE NV, Tienen, Belgium, (3)SESVanderHave, Tienen, Belgium, (4)National Research Council Canada, Saskatoon, SK, Canada, (5)National Research Council of Canada, Saskatoon, SK, Canada

W810: Sugar Cane (ICSB) Comparative Analysis of Miscanthus and Saccharum Reveals a Shared Whole-Genome Duplication but Different Evolutionary Fates

Changsoo Kim1, Xiyin Wang1, Tae-Ho Lee1, Katrin Jakob2, Geung-Joo Lee3 and Andrew H Paterson1, (1)University of Georgia, Athens, GA, (2)Mendel Biotechnology, Hayward, CA, (3)Chungnam National University, Daejeon, South Korea W811: Sugar Cane (ICSB) Diversity and Exome Variation in Saccharum Spp

Jianping Wang1, Jian Song1, Xiping Yang1, Spurthi N Nayak1, James Todd2, Hardev S Sandhu2 and Jack Comstock3, (1)Agronomy Department, University of Florida, Gainesville, FL, (2)Everglade Research and Education Center, Belle Glade, FL, (3)USDA-ARS, Canal Point, FL W812: Sugar Cane (ICSB) Using Next Generation Sequencing for Tagging Stress Resistance Genes from S spontaneum

Jong-Won Park, Texas AgriLife Research, Weslaco, TX, Qingyi Yu, Texas A&M AgriLife Research, Dallas, TX, Thiago Benatti, CTC - Centro de Tecnologia Canavieira, Piracicaba, Brazil and Jorge A Da Silva, Texas A&M University, Weslaco, TX W813: Sugar Cane (ICSB) TALEN-Mediated Precision Mutagenesis and Intragenic RNAi for Lignin Reduction in Sugarcane

Je Hyeong Jung, Hugo Dermawan and Fredy Altpeter, University of Florida - IFAS, Gainesville, FL

W814: Sugar Cane (ICSB) Metabolic Engineering of Sugarcane for Production of Oil and Increased Biomass Yield

Je Hyeong Jung1, Janice Zale1, Jae Yoon Kim1, Bhuvan Pathak1, Aloisio Vilarinho1, Aleel Grennan2, Hui Liu3, Ratna Karan1, Baskaran Kannan1, Xiaoguo Zhang1, Xiuhua Chen1, Jason Candreva3, Rebecca A Slattery2, Zhiyang Zhai3, Stephen Long2, Don Ort2, John Shanklin3 and Fredy Altpeter1, (1)University of Florida - IFAS, Gainesville, FL, (2)University of Illinois, Urbana-Champaign, Urbana, IL, (3)Brookhaven National Lab, Upton, NY W815: Sugar Cane (ICSB) Genome Organization and Molecular Characterization of P1 Suppressor from Indian Sugarcane Streak Mosaic Virus isolates

B Parameswari1, K Bagyalakshmi2, R Viswanathan2 and C Chinnaraja2, (1)Sugarcane Breeding Institute Regional Centre, Karnal, Haryana, India, (2)Sugarcane Breedng Institute, Coimbatore, Tamil Nadu, India W816: Sugar Cane (ICSB) Metabolic Changes Associated with the Development of Yellow Canopy Syndrome in Sugarcane

Frederik C Botha, Sugar Research Australia Limited, Indooroopilly, Australia W817: Sugar Cane Sequencing Initiative The Genome Sequence of a Sugarcane Hybrid: Exploring Gene Alleles, Transcripts and Regulatory Elements

Glaucia M Souza, Institute of Chemistry - University of São Paulo, São Paulo, Brazil

W818: Sugar Cane Sequencing Initiative Insights from a Long-Read Assembly of the Complex Sugarcane Genome

David Heckerman1, Carolina G Lembke2, Ravi Pandya3, Hayan Lee3, Bob Davidson3, Marie-Anne Van Sluys4, Glaucia M Souza2 and Gabriel Rodrigues Alves Margarido5, (1)Microsoft, Santa Monica, CA, (2)Institute of Chemistry - University of São Paulo, São Paulo, Brazil, (3)Microsoft Research, Redmond, WA, (4)Universidade de São Paulo, Sao Paulo, Brazil, (5)USP / ESALQ, Piracicaba, SP, Brazil W819: Sugar Cane Sequencing Initiative Sugarcane Genome De Novo Assembly Challenges

Hayan Lee1, Ravi Pandya2, Gabriel Rodrigues Alves Margarido3, Bob Davidson2, Jonas W Gaiarsa4, Carolina G Lembke5, Michael Schatz6, Marie-Anne Van Sluys7, Glaucia M Souza5 and David Heckerman8, (1)Stony Brook University, Stony Brook, NY, (2)Microsoft Research, Redmond, WA, (3)USP / ESALQ, Piracicaba, SP, Brazil, (4)GaTE Lab - University of São Paulo, Sao Paolo, Brazil, (5)Institute of Chemistry - University of São Paulo, São Paulo, Brazil, (6)Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, (7)Universidade de São Paulo, Sao Paulo, Brazil, (8)Microsoft, Los Angeles, CA W820: Sugar Cane Sequencing Initiative Sugarcane BAC Sequence Genomic Platform

Marie-Anne Van Sluys, Universidade de São Paulo, Sao Paulo, Brazil

198

W821: Sugar Cane Sequencing Initiative Transcriptional Dynamics of Source-Sink Balance in Sugarcane, and the R570 Transcriptome to Support Sugarcane Genome Sequencing Initiative

Renato Vicentini1, Guilherme Targino Valente2, Lucas Eduardo Costa Canesin1, Claudio B C Silva1, Melina C Mancini1, Estela A Costa1, Danilo A Sforça1, Michel Vincentz1 and Anete P Souza1, (1)University of Campinas - UNICAMP, Campinas, Brazil, (2)Universidade Estadual Paulista - UNESP, Botucatu, Brazil W822: Sugar Cane Sequencing Initiative Transcriptomic Analysis of Extreme Segregants in an Interspecific Saccharum F2 Population

Ching Man Wai1, Jisen Zhang2, Chifumi Nagai3 and Ray Ming1, (1)University of Illinois at Urbana-Champaign, Urbana, IL, (2)Fujian Agriculture and Forestry University, Fujian, China, (3)Hawaii Agriculture Research Center, Kunia, HI W823: Swine Genomics Meets Metabolomics: Developing a Systems Biology Approach to Understand the Genetic Mechanisms Affecting Complex Traits in Pigs

Luca Fontanesi1, Samuele Bovo2, Gianluca Mazzoni1, Giuseppina Schiavo1, Antonia Bianca Samorè1, Flaminia Fanelli3, Francesca Bertolini1, Emilio Scotti1, Giuliano Galimberti4, Daniela Giovanna Calò4, Marco Mezzullo3, Pier Luigi Martelli5, Rita Casadio5, Stefania Dall'Olio1 and Uberto Pagotto3, (1)Department of Agricultural and Food Sciences, University of Bologna, Bologna, Italy, (2)Department of Agricultural Sciences, University of Bologna, Bologna, Italy, (3)Department of Medical and Surgical Sciences, Endocrynology Unit, University of Bologna, Bologna, Italy, (4)Department of Statistical Sciences, University of Bologna, Bologna, Italy, (5)Biocomputing Group, University of Bologna, Bologna, Italy

W824: Swine Identification of damaging mutations in porcine taste receptor and appetite-reward genes by genome capture coupled with high throughput sequencing

Alex Clop1, Abdoallah Sharaf2, Anna Castelló1, Susanna Cirera3, Abe Huisman4, Merete Fredholm3, Pieter van As5 and Armand Sánchez6, (1)Centre for Research in Agricultural Genomics (CRAG), Cerdanyola del Valles, Spain, (2)Ain Shams University, Cairo, Egypt, (3)University of Copenhagen, Frederiksberg C, Denmark, (4)Hendrix-Genetics, Boxmeer, Netherlands, (5)Hendrix Genetics, Boxmeer, Netherlands, (6)Centre de Recerca en Agrigenòmica (CRAG), Bellaterra, Spain W825: Swine Comparative Analysis of the Gene Sets of Mammalian Sex Chromosomes

Toby Hunt, Matt Hardy, Jane Loveland, Chris Tyler-Smith and Jennifer Harrow, Wellcome Trust Sanger Institute, Cambridge, United Kingdom W826: Swine Whole Transcriptome Target Sequencing: A Tail Counting Method

Jennifer Michal1, Xiang Zhou1, Rui Li1, Richard M Harland2 and Zhihua Jiang1, (1)Washington State University, Pullman, WA, (2)University of California Berkeley, Berkeley, CA W827: Swine Research on Gilt First Estrus and Pubertal Development at USMARC

Dan Nonneman, Clay A Lents, Jim F Schneider, Jeffrey L Vallet and Gary A Rohrer, USDA, ARS, USMARC, Clay Center, NE

W828: Swine Translational Genomics of Porcine Reproductive and Respiratory Syndrome (PRRS)

Joan K Lunney1, Igseo Choi1, Hua Bao2, Arun Kommadath2, Le Luo Guan2, Graham S Plastow3, Raymond R R Rowland4, Sam M Abrams5, Jack CM Dekkers6 and Paul Stothard7, (1)APDL, BARC, ARS, USDA, Beltsville, MD, (2)Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB, Canada, (3)University of Alberta, Edmonton, AB, Canada, (4)Department of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS, (5)USDA ARS BARC, Beltsville, MD, (6)Department of Animal Science, Iowa State University, Ames, IA, (7)Department of Agricultural, Food and Nutritional Science, Edmonton, AB, Canada W829: Swine Analysis of the Host Genetics Influence on PCV2 Susceptibility

Daniel Ciobanu, University of Nebraska, Lincoln, NE W830: Swine CRISPR/Cas9-Mediated Genetic Engineering: Is CD163 an Entry Mediator for PRRSv Infection?

Randall S Prather, Kristin M Whitworth, Jonathan A Green and Kevin Wells, University of Missouri, Columbia, MO

W831: Swine Evidence of RNA Editing in Pig Longissimus Dorsi Muscle

Catherine W Ernst1, Scott A Funkhouser2, Juan P Steibel1, Ronald O Bates1 and Nancy E Raney1, (1)Department of Animal Science, Michigan State University, East Lansing, MI, (2)Genetics Program, Michigan State University, East Lansing, MI W832: Swine Characterizing the Iowa State University Severe Combined Immune Deficient (SCID) Pig

Christopher K Tuggle1, Ellis J Powell1, Daniela Rajao2, Crystal Loving2, Kristina Feye1, Joan Cunnick1, Phillip C Gauger1, Amy Vincent2, Emily H Waide1 and Jack CM Dekkers1, (1)Iowa State University, Ames, IA, (2)USDA-ARS-NADC, Ames, IA W833: Synthetic Biology Precision Genome and Metabolic Engineering for Genetic Improvement of the Biofuel Feedstock Sugarcane

Je Hyeong Jung1, Janice Zale1, Jae Yoon Kim1, Bhuvan Pathak1, Hui Liu2, Baskaran Kannan1, Ratna Karan1, Jason Candreva2, Zhiyang Zhai2, John Shanklin2 and Fredy Altpeter1, (1)University of Florida - IFAS, Gainesville, FL, (2)Brookhaven National Lab, Upton, NY W834: Synthetic Biology Take Control of Your Gene Construction Projects with the BioXP™ 3200 System

Julie Robinson, Synthetic Genomics, San Diego, CA

199

W835: Synthetic Biology Comprehensive Suite of Vectors Suitable for Wheat Transformation

Alison K Huttly, Rothamsted Research, Harpenden, United Kingdom W836: Synthetic Biology The Plantseed Resource for Functional Annotation and Cross-Kingdom Comparative Genomics of Plant Genomes

Samuel M D Seaver, Argonne National Laboratory, Argonne, IL W837: Synthetic Biology Metabolic Fingerprinting of Contaminant Microorganisms Present in the Fermentative Process of Ethanol

Mariana de Souza e Silva, Ilara G Bundzinsk, Thais Regiani, Fabrício E Moraes and Carlos A Labate, ESALQ/USP, Piracicaba, Brazil W838: Synthetic Biology VitisCyc: A Metabolic Pathway Knowledgebase for Grape (Vitis vinifera)

Sushma Naithani, Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR W839: Synthetic Biology Comparison of Sequence Changes in Rice Regenerants and Transformants

Yue-ie C Hsing, Institute Plant and Microbial Biology, Academia Sinica,, Taipei, Taiwan

W840: Systems Biology and Ontologies Transcription Start Site Sequencing Strongly Informs Gene Regulatory Network Inference

Molly Megraw, Oregon State University, Corvallis, OR W841: Systems Biology and Ontologies Facilitating Efficient Knowledge Management and Discovery in the Agronomic Sciences

Aravind Venkatesan, Institut de biologie Computationnelle, Montpellier, France W842: Systems Biology and Ontologies New Phytologist and the Plant Ontology: Working Together to Enhance Journal Content

Sarah Lennon1, Laurel Cooper2, Pankaj Jaiswal2, Helen Ougham3 and Dennis Wm Stevenson4, (1)New Phytologist, Lancaster, United Kingdom, (2)Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR, (3)Institute of Biological, Environmental & Rural Sciences (IBERS), Aberystwyth, Wales, (4)New York Botanical Garden, Bronx, NY W843: Systems Biology and Ontologies Inferring Gene Ontologies from Molecular Networks

Michael Kramer, Department of Medicine, University of California, San Diego, La Jolla, CA

W844: Systems Biology and Ontologies Metabolomics and Analysis of Quantitative Traits: State of the Art, Challenges and Future Perspectives

Aaron Fait, Ben-Gurion University, Midreshet Ben Gurion, Israel W845: Systems Biology and Ontologies The Interplay of DNA Methylation, Histone Modification and Gene Activity in Soybean Seed Development

Jer-Young Lin1, Min Chen1, Julie Pelletier2, Russell Baden2, John Harada2 and Robert B Goldberg1, (1)University of California, Los Angeles, CA, (2)University of California, Davis, CA W846: Systems Genomics Soybean Root Hair, a Single Cell Model to Study Plant-Microbe Interactions, Abiotic Stress and Epigenetic Regulation

Md Shakhawat Hossain, University of Missouri, Columbia, MO W847: Systems Genomics Systems Biology Analysis of Mechanism of Host Response to Avian Influenza Virus Infection in Two Genetically Distinct Chicken Inbred Lines

Huaijun Zhou, University of California, Davis, CA, Ying Wang, University of California Davis, Davis, CA, Neil D Huefner, University of California - Davis, Davis, CA, Blanca Lupiani, Texas A&M University, college station, TX, Sanjay Reddy, Texas A&M University, College Station, TX and Susan J Lamont, Iowa State University, Ames, IA

W848: Systems Genomics The Molecular Mechanisms of Crop Quality: Cloning and Systems Analysis of 474 Genes Controlling Fiber Length in Cotton, Gossypium hirsutum L and G barbadense L

Yun-Hua Liu1, Meiping Zhang1, Yang Zhang1, Wayne Smith1, Steve Hague1, Sing-Hoi Sze1, Jun Zhu2, James Frelichowski3 and Hong-Bin Zhang1, (1)Texas A&M University, College Station, TX, (2)Zhejiang University, Hangzhou, China, (3)USDA-ARS, College Station, TX W849: Systems Genomics Bridging Physiological and Evolutionary Time Scales in a Gene Regulatory Network

Gwenaelle Marchand1, Vân Anh Huynh-Thu2, Nolan Kane3, Sandrine Arribat4, Didier Varès1, David Rengel1, Sandrine Balzergue5, Loren H Rieseberg6, Patrick Vincourt1, Pierre Geurts2, Matthieu Vignes7 and Nicolas Langlade1, (1)INRA LIPM, Castanet-Tolosan, France, (2)University of Liège, Liège, Belgium, (3)University of Colorado, Boulder, CO, (4)INRA - URGV, Evry, France, (5)INRA URGV, Evry, France, (6)University of British Columbia, Vancouver, BC, Canada, (7)INRA MIAT, Castanet-Tolosan, France W850: Systems Genomics Complementary Regulatory Networks Enabled By Parallel Transcriptome and Proteome Dynamics

Steven Briggs, University of California, San Diego, La Jolla, CA

200

W851: Systems Genomics Draft Genome of Horseweed Illuminates Expansion of Gene Families That Might Endow Herbicide Resistance

C Neal Stewart Jr1, Yanhui Peng1, Zhou Lai2, Thomas Lane3, Madhugiri Nageswara-Rao3, Miki Okada4, Marie Jasieniuk4, Henriette O'Geen5, R Douglas Sammons6 and Loren H Rieseberg7, (1)Department of Plant Sciences, University of Tennessee, Knoxville, TN, (2)UTHSC-San Anotino, San Antonio, TX, (3)University of Tennessee, Knoxville, TN, (4)University of California - Davis, Davis, CA, (5)UC Davis Genome Center, Davis, CA, (6)Monsanto Company, St Louis, MO, (7)University of British Columbia, Vancouver, BC, Canada W852: The National Plant Genome Initiative -- Research Challenges and Resouirce Needs in Phenotyping, Cyberinfrastructure & Bioinformatics, and the Microbiome? TBD

Gary Atlin, Bill & Melinda Gates Foundation, Seattle, WA W853: The National Plant Genome Initiative -- Research Challenges and Resouirce Needs in Phenotyping, Cyberinfrastructure & Bioinformatics, and the Microbiome? TBD

Edgar Spalding, University of Wisconsin Madison, Madison, WI

W854: The National Plant Genome Initiative -- Research Challenges and Resouirce Needs in Phenotyping, Cyberinfrastructure & Bioinformatics, and the Microbiome? TBD

Leon Kochian, Robert W Holley Center, USDA-ARS & Cornell University, Ithaca, NY W855: The National Plant Genome Initiative -- Research Challenges and Resouirce Needs in Phenotyping, Cyberinfrastructure & Bioinformatics, and the Microbiome? TBD

Jan E Leach, Colorado State University, Fort Collins, CO W856: The National Plant Genome Initiative -- Research Challenges and Resouirce Needs in Phenotyping, Cyberinfrastructure & Bioinformatics, and the Microbiome? TBD

Venkatesan Sundaresan, University of California-Davis, Davis, CA W857: The National Plant Genome Initiative -- Research Challenges and Resouirce Needs in Phenotyping, Cyberinfrastructure & Bioinformatics, and the Microbiome? TBD

Dave Weston, Oak Ridge National Laboratory, Oak Ridge, TN

W858: The National Plant Genome Initiative -- Research Challenges and Resouirce Needs in Phenotyping, Cyberinfrastructure & Bioinformatics, and the Microbiome? TBD

Doreen Ware, Cold Spring Harbor Laboratory/USDA-ARS, Cold Spring Harbor, NY W859: The Resurgence of Reference Quality Genome Sequence The Resurgence of Reference Quality Genome Sequence

Michael Schatz, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY W860: The Resurgence of Reference Quality Genome Sequence Old School/New School Genome Sequencing: One Step Backward - a Quantum Leap Forward

Rod A Wing1, Jianwei Zhang1, Dave Kudrna1, Dario Copetti2, Yeisoo Yu1, Seunghee Lee1, Jayson Talag1 and Ann Danowitz2, (1)Arizona Genomics Institute, University of Arizona, Tucson, AZ, (2)Arizona Genomics Institute, Tuscon, AZ W861: The Resurgence of Reference Quality Genome Sequence Reference Genome Assembly in 2015 - Methods for the 21st Century

Kim C Worley, Yue Liu, Shwetha C Murali, Daniel S T Hughes, Adam C English, Xiang Qin, Stephen Richards, Jeffrey Rogers, Yi Han, Vanessa Vee, Min Wang, Eric Boerwinkle, Donna M Muzny and Richard A Gibbs, Baylor College of Medicine, Houston, TX

W862: The Resurgence of Reference Quality Genome Sequence Current Options for Creating Genome Assemblies, and their Uses

Timothy PL Smith, USDA-ARS, US Meat Animal Research Center, Clay Center, NE W863: The Resurgence of Reference Quality Genome Sequence An in vitro Long-Range Mate-Pair Protocol for Genome Scaffolding

Richard Green, University of California, Santa Cruz, Santa Cruz, CA W864: The Resurgence of Reference Quality Genome Sequence Reference Quality Genome Assembly

Daniel S Rokhsar, DOE Joint Genome Institute, Walnut Creek, CA W865: Transposable Elements Recent Expansion of a Novel LTR Retrotransposon in Sorghum bicolor

Hui Guo, Yuannian Jiao, Xu Tan, Xiyin Wang, Huizhe Jin and Andrew H Paterson, Plant Genome Mapping Laboratory, University of Georgia, Athens, GA

201

W866: Transposable Elements Transposable Elements in the A and B Genomes of Peanut

David Bertioli1, Dongying Gao1, Bruna S Vidigal2, Lutz Froenicke3, Steven B Cannon4, Brian Abernathy1, Longhui Ren5, Ana Claudia Guerra Araujo6, Patricia Messenberg Guimarães7, Soraya Bertioli8, Richard Michelmore3 and Scott A Jackson1, (1)University of Georgia, Athens, GA, (2)Universidade de Brasília, Brasilia, Brazil, (3)Genome Center, University of California, Davis, CA, (4)USDA-ARS-CICGRU, Ames, IA, (5)Iowa State University, Ames, IA, (6)EMBRAPA, Brasilia, Brazil, (7)Cenargen-EMBRAPA, Brasilia, Brazil, (8)University of Georgia, Winterville, GA W867: Transposable Elements Plant Genome Reshuffling via Rolling Circle Helitrons

Chunguang Du, Montclair State University, Montclair, NJ W868: Transposable Elements Genome-Wide Analysis of Transposon Insertion and Excision Patterns in the Two Rice Species O sativa and O glaberrima

Thomas Wicker and Stefan Roffler, University of Zurich, Zurich, Switzerland W869: Transposable Elements Auto-Regulation of a Rice Mariner-like Element By a Subterminal Transposase Binding Site

Guojun Yang, University of Toronto, Mississauga, ON, Canada

W870: Transposable Elements Transposition of a Rice Mutator-like Element in Yeast

Dongyan Zhao, Armenia A Ferguson and Ning Jiang, Michigan State University, East Lansing, MI W871: Transposable Elements BARE, a Multiply Mobile Retrotransposon

Alan H Schulman1, Marko Jääskeläinen2, Wei Chang2, Carlos M Vicient3, Eva Gómez-Orte4 and Jaakko Tanskanen1, (1)LUKE & University of Helsinki, Helsinki, Finland, (2)Institute of Biotechnology, University of Helsinki, Helsinki, Finland, (3)Center for Research in Agrigenomics CRAG (CSIC-IRTA-UAB-UB), Barcelona, Spain, (4)CIBIR (Centre for Biomedical Research of La Rioja), Logroño, Spain W872: Tripal Database Network and Initiatives Tripal Overview & Future Developments

Stephen P Ficklin, Washington State University, Pullman, WA W873: Tripal Database Network and Initiatives Extending Tripal for Specialized Display and Management of Diversity and Breeding Data

Lacey-Anne Sanderson1, Stephen P Ficklin2, Dorrie Main2 and Kirstin Bett1, (1)University of Saskatchewan, Saskatoon, SK, Canada, (2)Washington State University, Pullman, WA

W874: Tripal Database Network and Initiatives GDR/CottonGen: Converting Legacy Sites to Tripal

Sook Jung, Jing Yu, Taein Lee, Chun-Huai Cheng, Stephen P Ficklin and Dorrie Main, Washington State University, Pullman, WA W875: Tripal Database Network and Initiatives The i5k Workspace@Nal - a Tripal Based Arthropod Genome Portal

Christopher Childers, USDA/Agricultural Resarch Service/National Agricultural Library, Beltsville, MD W876: Tripal Database Network and Initiatives Tripal within the Arabidopsis Information Portal (AIP)

Maria Kim, Vivek Krishnakumar, Benjamin D Rosen, Chia-Yi Cheng, Erik Ferlanti, Jason R Miller and Christopher D Town, J Craig Venter Institute, Rockville, MD W877: Tripal Database Network and Initiatives Tripal within the Legumes Genomics Community

Ethalinda Cannon, Iowa State University, Ames, IA

W878: Tripal Database Network and Initiatives The Hardwood Genomics Database: Current Status and Future Directions after Four Years of Development

Margaret Staton1, Nate Henry1, Mark Cook1, Thomas Lane1, Thomas Lane1, Jack Davitt1, Mark Coggeshall2, Oliver Gailing3, Haiying Liang4, Jeanne Romero-Severson5, Scott Schlarbaum6, Ketia Shumaker7, Nicholas Wheeler8 and John E Carlson9, (1)University of Tennessee Institute of Agriculture, Knoxville, TN, (2)University of Missouri, Columbia, MO, (3)Michigan Technological University, Houghton, MI, (4)Clemson University, Clemson, SC, (5)University of Notre Dame, Notre Dame, IN, (6)University of Tennessee, Knoxville, TN, (7)The University of West Alabama, Livingston, AL, (8)Pennsylvania State University, Centralia, WA, (9)Pennsylvania State University, University Park, PA W879: Triticeae 1 Positional Cloning of the Wheat Vernalization Gene VRN-D4 Reveals the Origin of Spring Growth Habit in Ancient Hexaploid Wheats from India

Nestor Kippes1, Bala Ani Akpinar2, Hans Vasquez-Gross1, Shiaoman Chao3, Eduard Akhunov4, Hikmet Budak2, Kenji Kato5 and Jorge Dubcovsky1, (1)University of California Davis, Davis, CA, (2)Sabanci University, Istanbul, Turkey, (3)USDA-ARS, Fargo, ND, (4)Kansas State University, Manhattan, KS, (5)Okayama University, Okayama, Japan

202

W880: Triticeae 1 Identification of Cer-Zv, a Gene Responsible for Cutin Formation in the Barley Leaf Cuticle

Chao Li1, Guoxiong Chen2, Kohei Mishina1, Mohammad Pourkheirandish1, Cheng Liu1, Nadia Anwar1, Pengshan Zhao2, Udda Lundqvist3, Christiane Nawrath4, Takashi R Endo5 and Takao Komatsuda1, (1)National Institute of Agrobiological Sciences, Tsukuba, Japan, (2)Key Laboratory of Stress Physiology and Ecology in Cold and Arid Regions, Gansu Province, Cold and Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Sciences, Lanzhou, China, (3)Nordic Genetic Resource Center, Alnarp, Sweden, (4)Department of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland, (5)Centre of Plant Structural and Functional Genomics, Institute of Experimental Botany, Holice, Czech Republic W881: Triticeae 1 Genetic Analysis of Pre-Anthesis Phase Duration in Spring Barley (Hordeum vulgare L)

Ahmad Mohammad I Alqudah1, Rajiv Sharma2, Raj K Pasam3, Andreas Graner1, Benjamin Kilian4 and Thorsten Schnurbusch1, (1)Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany, (2)College of Life Science, University of Dundee at The James Hutton Institute, Dundee, United Kingdom, (3)Biosciences Research Division, Agriculture Productivity, Department of Environment and Primary Industries, Victoria, Australia, (4)Bayer CropScience NV, Innovation Center, Zwijnaarde, Belgium

W882: Triticeae 1 Molecular Characterization of the Cytoplasmic Male Sterility System Underlying the Breeding and Production of HyvidoTM Hybrids in Barley

Carine Rizzolatti1, Nathalie Rodde2, Hélène Bergès2, Pierre Pin1, Edouard Tatara3, Françoise Budar4, Hakim Mireau4, Paul Bury5 and Jan Gielen1, (1)Syngenta, Saint-Sauveur, France, (2)INRA - CNRGV, Castanet Tolosan, France, (3)Syngenta, Orgerus, France, (4)INRA, Versailles, France, (5)Syngenta, Market Stainton, England W883: Triticeae 1 Mapping Stem Rust Resistance on Chromosome 3BL in Thatcher That Interacts with Lr34

Colin Hiebert, Agriculture and Agri-Food Canada, Morden, MB, Canada W884: Triticeae 1 Genetic Dissection of Mechanisms Underlying Drought Tolerance in Wheat

Delphine Fleury, ACPFG, University of Adelaide, Adelaide, Australia W885: Triticeae 2 Genomic Diversity, Adaptation and Selection in Barley

Robbie Waugh, The James Hutton Institute, Dundee, United Kingdom

W886: Triticeae 2 A 43 Gb Genome Map of the Barley Genome As a Tool for Assembly

Alan H Schulman1, Alex Hastie2, Martin Mascher3, Hana Simkova4, Jan Vrana4, Jaakko Tanskanen1, Jaroslav Dolezel4 and Nils Stein3, (1)LUKE & University of Helsinki, Helsinki, Finland, (2)BioNano Genomics, San Diego, CA, (3)Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany, (4)Institute of Experimental Botany, Olomouc, Czech Republic W887: Triticeae 2 Call of the Wild: Exploiting Hordeum vulgare spp spontaneum for Barley Improvement

Brian J Steffenson, University of Minnesota, St Paul, MN W888: Triticeae 2 The Photoperiod Response Gene Ppd-H1 Affects Leaf Size and Phyllochron in Barley

Laura Rossini1, Benedikt Digel2, Gabriele Verderio1, Elahe Tavakol3, Alessandro Tondelli4, Xu Xin5, Luigi Cattivelli4 and Maria von Korff2, (1)Universty of Milan - DiSAA, Milano, Italy, (2)Department of Developmental Biology, Max Planck Institute for Plant Breeding Research, Cologne, Germany, (3)University of Milan - DiSAA, Milano, Italy, (4)CRA-GPG, Genomics Research Centre, Fiorenzuola d'Arda, Italy, (5)College of Life Science, South-Central University for Nationalities, Wuhan, China

W889: Triticeae 2 Analysis of Highly Repetitive BAC Clones Reveals Rapid Evolution of highly variable Gene Clusters in Triticeae

Thomas Wicker1, Martin Mascher2, Sebastian Beier3, Axel Himmelbach4, Uwe Scholz3 and Nils Stein5, (1)University of Zurich, Zurich, Switzerland, (2)Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany, (3)Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany, (4)Institute of Plant Genetics & Crop Plant Research, Gatersleben, Germany, (5)Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Stadt Seeland, Germany W890: Triticeae 2 Broad Leaves, Narrow Leaves, or No Leaves at All - Genetic Dissection of Barley Leaf Growth

Moritz Joest, Institute of Biochemistry and Biology, University of Potsdam, Potsdam-Golm, Germany W891: UCSC Genome Browser - a home for all organisms UCSC Genome Browser - a Home for All Organisms

Robert Kuhn, UCalifornia Santa Cruz, Santa Cruz, CA W892: UCSC Genome Browser - a home for all organisms UCSC Genome Browser - a Home for All Organisms

Pauline Fujita, University of California Santa Cruz, Santa Cruz, CA

203

W893: Weedy and Invasive Plant Genomics The Genetics of Adaptation in an Invasive Plant (Ambrosia artemisiifolia)

Kathryn A Hodgins, Monash University, Clayton, Australia and Loren H Rieseberg, University of British Columbia, Vancouver, BC, Canada W894: Weedy and Invasive Plant Genomics Polyploid Origins and the Genomics of Adaptation in the Worldwide Weed Capsella bursa-pastoris

Gavin Douglas1, Adriana Salcedo1, Gesseca Gos1, Kim Steige2, Karl Holm2, J Arvid Ågren1, Khaled Michel Hazzouri3, Wei Wang1, Adrian Platts4, Emily Josephs1, Robert J Williamson1, Barbara Neuffer5, Tanja Slotte6, John Stinchcombe7, Martin Lascoux2 and Stephen I Wright1, (1)University of Toronto, Toronto, ON, Canada, (2)Uppsala University, Uppsala, Sweden, (3)New York University Abu Dhabi, Abu Dhabi, United Arab Emirates, (4)McGill University, Montreal, QC, Canada, (5)University of Osnabrück, Osnabrück, Germany, (6)University of Stockholm, Stockholm, Sweden, (7)U of Toronto, Toronto, ON, Canada W895: Weedy and Invasive Plant Genomics Uncovering Differential Molecular Basis of Adaptive Diversity in Echinochloa Transcriptomes

Gyoungju Nah, Ji-Hoon Im, Jin-Won Kim and Do-Soon Kim, Seoul National University, Seoul, South Korea W896: Weedy and Invasive Plant Genomics Genetics of Weediness in Sorghum halepense

Wenqian Kong, University of Georgia, Athens, GA

W897: Weedy and Invasive Plant Genomics Divergence Population Genetics of De-Domestication in California Weedy Rice (Oryza sp)

Amy Lawton-Rauh, Clemson University, Clemson, SC W898: Weedy and Invasive Plant Genomics Looking at the Bright Side of an Invasive Species: Spartina alterniflora from an Abiotic Stress Tolerance Perspective

Venkata R Mangu1, Renesh Bedre1, Hana Zandkarimi2 and Niranjan Baisakh1, (1)Louisiana State University Agricultural Center, Baton Rouge, LA, (2)Louisiana State university Agricultural Center, Baton Rouge, LA W899: What are the bottlenecks in high-throughput phenotype research? Maize Seed Phenotyping By Machine Vision

A Mark Settles, University of Florida, Gainesville, FL, Gainesville, FL W900: What are the bottlenecks in high-throughput phenotype research? Predictive Phenomics at Iowa State

Patrick S Schnable, Department of Agronomy, Iowa State University, Ames, IA W901: What are the bottlenecks in high-throughput phenotype research? Industrial Technology for Phenotyping Plants in the Field

Matthew Thompson, Blue River Technology, Sunnyvale, CA

204

P0001: Bioenergy - Odd Improving Poplar for Biofuel Applications: Elucidating the Genetic Basis of Important Traits in Populus nigra through an Association Genetics Approach in a Natural, Wide Mapping Population

Mike Allwright1, Hazel Katherine Smith1, Giovanni Emiliani2, Adrienne Payne1, Maud Viger1, Giorgio Alberti3, Alessandro Zaldei4, Davide Scaglione5, Simone Scalabrin6, Billy Valdes-Fragoso1, Franchesca Rouse1, Joao Paulo7, Fred E van Eeuwijk7, Patricia Faivre Rampant8, Michele Morgante9 and Gail Taylor1, (1)University of Southampton, Southampton, United Kingdom, (2)CNR-IVALSA, Trees and Timber Institute, Florence, Florence, Italy, (3)Università Di Udine, Udine, Italy, (4)CNR - Institute for Biometeorology, Florence, Italy, (5)Parco Tecnologico Padano, Milan, Italy, (6)IGA Technology Services, Udine, Italy, (7)Biometris, Wageningen UR Plant Science Group, Wageningen, Netherlands, (8)INRA Evry, Evry, France, (9)Università di Udine, Udine, Italy P0002: Bioenergy - Even Regulatory Networks Associated with Plant Cell Wall Deconstruction by Neurospora crassa

N Louise Glass, University of California, Berkeley, CA

P0003: Bioenergy - Odd Assembly and Functional Annotation of the Salix purpurea L Chloroplast Genome

Craig H Carlson1, Haibao Tang2, Vivek Krishnakumar3, Agnes P Chan2, Christopher D Town2, Gerald A Tuskan4, Jeremy Schmutz5, Kerrie W Barry6, Erika A Lindquist6, Stephen DiFazio7 and Lawrence Smart1, (1)Cornell University, Geneva, NY, (2)J Craig Venter Institute, Rockville, MD, (3)J Craig Venter Inst, Rockville, MD, (4)Oak Ridge National Laboratory, Oak Ridge, TN, (5)HudsonAlpha Institute for Biotechnology, Huntsville, AL, (6)DOE Joint Genome Institute, Walnut Creek, CA, (7)West Virginia University, Morgantown, WV P0004: Bioenergy - Even Genome-Wide Analysis of Oleosin Gene Family in Tree Species

Heping Cao, USDA-ARS-Southern Regional Research Center, New Orleans, LA P0005: Bioenergy - Odd Effect of Ganoderma Infection on the Composition of Acyl Lipids in Oil Palm Leaves

Abrizah Othman1, Arif Mohamad2, Salvatore Syahanim2, B Bahariah2, AS Idris3 and AS Mohd Din2, (1)Malaysian Palm Oil Board, Kajang, Selangor, Malaysia, (2)Advanced Biotechnology & Breeding Centre, Selangor, Malaysia, (3)Biological Research Division, Malaysian Palm Oil Board, Selangor, Malaysia

P0006: Bioenergy - Even Genome-Wide Association Study of Oil Palm Mesocarp Oil Yield Content and Its Application for Marker Selection

Chee-Keng Teh, Sime Darby Technology Centre Sdn Bhd, Serdang, Malaysia P0007: Bioenergy - Odd Discovery and Characterization of Polymorphic Sites in the Jatropha curcas Genome

Jaire A F Filho1, Eduardo Fernandes Formighieri2, Tatiana Barbosa Rosado3, Bruno Galvêas Laviola2 and Alexandre Alonso Alves2, (1)Embrapa Agroenergy, Brasilia, Brazil, (2)Embrapa Agroenergy, Brasília, Brazil, (3)Universidade de Brasília, Brasília, Brazil P0008: Bioenergy - Even Genome Assembly of an Amazonian Elaeis oleifera Genotype and Comparative Analysis with Other Oil Palm Genomes

Jaire A F Filho1, Francisco P Lobo2, Manoel Teixeira Souza Junior3, Alexandre Alonso Alves3 and Eduardo Fernandes Formighieri3, (1)Embrapa Agroenergy, Brasilia, Brazil, (2)Embrapa Informática Agropecuária, Campinas, SP, Brazil, (3)Embrapa Agroenergy, Brasília, Brazil P0009: Bioenergy - Odd Development of New Energy Cane Cultivars in Florida

Vanessa S Gordon, USDA-ARS Sugarcane Field Station, Canal Point, FL, Jack Comstock, USDA-ARS, Canal Point, FL, Hardev S Sandhu, UF-EREC, Belle Glade, FL, Robert Gilbert, University of Florida, Gainesville, FL, Nael El-Hout, BP Biofuels, Tampa, FL and Rebecca Arundale, BP Biofuels, Houston, TX

P0010: Bioenergy - Even Improving Canopy Level Photosynthesis in Sugarcane

Baskaran Kannan1, Aloisio Vilarinho1, Aleel Grennan2, Xiaoguo Zhang1, Ratna Karan1, Xiuhua Chen1, Rebecca A Slattery2, Stephen Long2, Don Ort2 and Fredy Altpeter1, (1)University of Florida - IFAS, Gainesville, FL, (2)University of Illinois, Urbana-Champaign, Urbana, IL P0011: Bioenergy - Odd Growth and Maturation of Sugarcane SP80-3280 in Two Different Seasons

Carolina G Lembke1, Savio S Ferreira1, Isabella B Valadão2, Hermann Hoffmann2, Monalisa S Carneiro2 and Glaucia M Souza1, (1)Institute of Chemistry - University of São Paulo, São Paulo, Brazil, (2)Centro de Ciências Agrárias, Federal University of São Carlos, Araras, Brazil P0012: Bioenergy - Even Large Scale Analysis of Gene Expression Under Circadian Rhythms from Distinct Photoperiods Conditions in Sugarcane (Saccharum sp)

Leonardo Cardoso Alves, Michael T Lovci, Katlin B Massirer and Renato Vicentini, University of Campinas - UNICAMP, Campinas, Brazil P0013: Bioenergy - Odd Diversity and Preliminary Association Analyses of 20 Camelina Spp European Accessions Using SNP Genotyping

Sanghyeob Lee, Sejong University, Seoul, South Korea

205

P0014: Bioenergy - Even Improving Arundo donax Biomass through RNAi Induced Flowering Delay

Gaia Pigna1, Elia Moglia2, Sonia Giacometti2, Piero Morandini2, Scott C Lenaghan3 and C Neal Stewart Jr4, (1)University of Tennessee, Knoxville, TN, (2)University of Milan, Milano, Italy, (3)Center for Renewable Carbon, University of Tennessee, Knoxville, TN, (4)Department of Plant Sciences, University of Tennessee, Knoxville, TN P0015: Bioenergy - Odd Functional Informatics of Cellulose Synthase Genes in Wheat

Simerjeet Kaur, McGill University, Ste Anne de Bellevue, QC, Canada, Kanwarpal Dhugga, Pioneer Hi-Bred International, Johnston, IA, Kulvinder Gill, Washington State University, Pullman, WA and Jaswinder Singh, McGill University, Ste Anne de Bellevue, QC, Canada P0016: Bioenergy - Even Yield and Forage Value of a Dual-Purpose bmr-12 Sorghum Hybrid

Melinda Yerka1, Andrea Watson2, Galen Erickson2, John Toy1, Jeffrey Pedersen1 and Rob Mitchell1, (1)USDA-ARS, Lincoln, NE, (2)University of Nebraska-Lincoln, Lincoln, NE P0017: Bioenergy - Odd Characterization of Biomass Traits in Grain Amaranth (Amaranthus spp)

Xinwang Wang, Texas A&M AgriLife Research Center, Texas A&M University, Dallas, TX and Wendy W Wang, Jasper High School, Plano, TX

P0018: Bioenergy - Even Phenotypic and Genotypic Variation for Biomass Yield Components in Half-Sib Families of Prairie Cordgrass

Jia Guo1, DK Lee1 and Patrick J Brown2, (1)University of Illinois Urbana-Champaign, Urbana, IL, (2)University of Illinois at Urbana-Champaign, Urbana, IL P0019: Bioenergy - Odd Characterization of Candidate Overwintering Genes in Forage: Biofuel Napiergrass (Pennisetum purpureum Schumach)

Charlie Dowling, Texas A&M University, College Station, TX P0020: Bioenergy - Even Rapid Low-Cost Method for Protoplast Isolation from Suspension Cultures of Switchgrass

A Grace Collins1, Scott C Lenaghan2 and C Neal Stewart Jr1, (1)Department of Plant Sciences, University of Tennessee, Knoxville, TN, (2)Center for Renewable Carbon, University of Tennessee, Knoxville, TN P0021: Bioenergy - Odd Panicum hallii: Tissue Culture & Transformation

Joshua N Grant1, Elizabeth M Dlugosz1, Jason N Burris1, Scott C Lenaghan2 and C Neal Stewart Jr1, (1)Department of Plant Sciences, University of Tennessee, Knoxville, TN, (2)Center for Renewable Carbon, University of Tennessee, Knoxville, TN

P0022: Bioenergy - Even Identification, Characterization, and Gene Expression Analysis of NB-LRR Encoding Resistance Genes in the Bioenergy Plant Switchgrass (Panicum virgatum L)

Taylor P Frazier1, Fuliang Xie2, Baohong Zhang3 and Bingyu Zhao1, (1)Virginia Tech, Blacksburg, VA, (2)East Carolina University, Greenville, NC, (3)East Carolina University, GReenville, NC P0023: Bioenergy - Odd Population Genomic Variation Reveals Roles of History, Adaptation, and Ploidy in Switchgrass

Paul Grabowski1, Geoffrey Morris2, Michael Casler1 and Justin O Borevitz3, (1)USDA-ARS, Madison, WI, (2)Kansas State University, Manhattan, KS, (3)Australian National University, Canberra, Australia P0024: Bioenergy - Even Development of Reference Epigenomes and Transcriptomes in Switchgrass

Vasudevan Ayyappan1, Malay C Saha2, Jyothi Thimmapuram3, Ketaki Bhide4 and Venu (Kal) Kalavacharla1, (1)Delaware State University, Dover, DE, (2)Samuel Robert Noble Foundation, Ardmore, OK, (3)Purdue University, West Lafayette, IL, (4)Purdue University, West Lafayette, IN P0025: Bioenergy - Odd Ablation of Transgenic Pollen in the Model Perennial Grass Brachypodium sylvaticum

Ray Collier1, Richard Bryan Hernandez2 and Roger Thilmony1, (1)USDA-ARS, Albany, CA, (2)Dept of Plant Sciences, University of California, Davis, CA

P0026: Bioenergy - Even Genome-Wide Association Analysis of Flowering Time in Miscanthus sinensis

Lindsay V Clark1, Joe E Brummer2, Katarzyna Glowaca3, Megan Hall4, Kweon Heo5, Junhua Peng6, Gerald van Koeverden7, Toshihiko Yamada8, Ji Hye Yoo5, Chang Yeon Yu5, Hua Zhao9, Stephen Long1 and Erik J Sacks10, (1)University of Illinois, Urbana-Champaign, Urbana, IL, (2)Colorado State University, Fort Collins, CO, (3)University of Illinois Urbana-Champaign, Urbana, IL, (4)UC Berkeley, Berkeley, CA, (5)Kangwon National University, Chuncheon, South Korea, (6)Huazhong Agricultural University, Wuhan, Hubei, China, (7)New Energy Farms, Leamington, ON, Canada, (8)Hokkaido University, Sapporo, Hokkaido, Japan, (9)Huazhong Agricultural University, Wuhan, China, (10)Energy Biosciences Institute, University of Illinois, Urbana, IL P0027: Bioenergy - Odd Biotic and Abiotic Stress Tolerance of Phenylalanine Ammonia Lyase-Suppressed Brachypodium

Cynthia L Cass1, Antoine Peraldi2, Patrick F Dowd3, Yaseen Mottiar4, Nicholas Santoro5, Steven D Karlen6, Yury V Bukhman6, Cliff E Foster5, Nick Thrower5, Laura C Bruno2, Oleg V Moskvin6, Eric T Johnson3, Megan E Willhoit1, Megha Phutane1, John Ralph7, Shawn D Mansfield4, Paul Nicholson2 and John C Sedbrook1, (1)Illinois State University and GLBRC, Normal, IL, (2)John Innes Centre, Norwich, United Kingdom, (3)USDA-ARS, Peoria, IL, (4)University of British Columbia and GLBRC, Vancouver, BC, Canada, (5)DOE GLBRC,Michigan State University, East Lansing, MI, (6)GLBRC and University of Wisconsin, Madison, WI, (7)GLBRC, University of Wisconsin, Wisconsin Energy Institute, Madison, WI

206

P0028: Bioenergy - Even Dissecting the Genomic Architectures of Phenotypic Traits in the Energy Grass Miscanthus

Gancho T Slavov1, Michael Squance2, Chris Davey2, Paul R H Robson1, Elaine Jensen1, Kerrie Farrar1, Xue-Feng Ma3, Lin Huang4, Timothy Swaller3, John C Clifton-Brown1 and Iain Donnison1, (1)Aberystwyth University, Aberystwyth, United Kingdom, (2)IBERS, Aberystwyth, United Kingdom, (3)Ceres Inc, Thousand Oaks, CA, (4)IBERS, Aberystwyth University, Aberystwyth, United Kingdom P0029: Genome Technology: Sequencing - Odd Flexible Method for Targeted Transcript Depletion from RNA-Seq Libraries: Mouse, Rat, Drosophila and Arabidopsis

Steven R Kain, NuGEN Technologies, San Carlos, CA P0030: Genome Technology: Sequencing - Even Impact of DNA Quality on PacBio RSII Read Lengths

Robert Bogden1, Steve Kujawa2, Amy Mraz1, Travis Ruff1, Joan Wilson2 and Jon Wittendorp1, (1)Amplicon Express, Inc, Pullman, WA, (2)Pacific Biosciences, Menlo Park, CA

P0031: Genome Technology: Sequencing - Odd Advanced Technologies in Next-Generation Sequencing Platforms and Sample Preparation for Whole Genome, Transcriptome and Metagenomic Sequencing

Chris Wright1, Alvaro Hernandez1, Mark Band2 and Mark A Mikel3, (1)Roy J Carver Biotechnology Center, Urbana, IL, (2)Roy J Carver Biotechnology Center, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA, Urbana, IL, (3)University of Illinois at Urbana-Champaign, Urbana, IL P0032: Genome Technology: Sequencing - Even High Quality Short Read Assembly of B10 Cucumber Line Genome

Pawe! Osipowski1, Michal Krzysztof Wojcieszek2, Magdalena Pawelkowicz2, Kouhei Yagi1, Wojciech Plader2 and Zbigniew Przybecki2, (1)Warsaw University of Life Sciences - SGGW, Warsaw, Poland, (2)Department of Plant Genetics, Breeding and Biotechnology, Warsaw University of Life Sciences - SGGW, Warsaw, Poland P0033: Genome Technology: Sequencing - Odd BAC Sudoku Sequencing and Closing Repeat Rich BAC Clone

Curtis Knox, David Mead, Svetlana Jasinovica, Erin Ferguson, Megan Niebauer, Amanda Krerowicz, Scott Monsma and Michael J Lodes, Lucigen Corporation, Middleton, WI

P0034: Genome Technology: Sequencing - Even Making Sense of Transcriptome Assemblies

Marta Matvienko1, Joseph G Dubrovsky2, Gustavo Rodriguez-Alonso2 and Svetlana Shishkova3, (1)CLC bio, a QIAGEN Company, Davis, CA, (2)Instituto de Biotecnología, UNAM, Cuernavaca, Mexico, (3)Instituto de Biotecnología, UNAM, Cuernavaca, Morelos, Mexico P0035: Genome Technology: Sequencing - Odd Closing and Finishing Genomes with Long Span NGS Reads

David Mead, Michael J Lodes, Svetlana Jasinovica, Erin Ferguson, Amanda Krerowicz, Brendan Keough, Megan Niebauer and Scott Monsma, Lucigen Corporation, Middleton, WI P0036: Genome Technology: High-throughput Methods - Even Never considered: affordable solutions for ultra-high-throughput phenotyping

Bas van Eerdt, WPS, De Lier, Netherlands P0037: Genome Technology: High-throughput Methods - Odd Plant Metabolic Engineering: Opportunities for Plant Phenotyping

Stevens M Brumbley, University of North Texas, Denton, TX P0038: Genome Technology: High-throughput Methods - Even Agriculture in the digital era

Xavier Sirault, CSIRO Plant Industry - High Resolution Plant Phenomics Centre, Canberra, Australia

P0039: Genome Technology: High-throughput Methods - Odd What is required to close the gap between greenhouse and field phenotyping?

Grégoire Hummel, Phenospex, Heerlen, Netherlands P0040: Genome Technology: High-throughput Methods - Even Amplicon Based 16S Ribosomal RNA Sequencing and Genus Identification - Mixed Species Metagenomics

Masoud Toloue1, Jan Risinger1, Lindsey Renken1, Josh Hill2, Noushin Ghaffari3, Richard P Metz3 and Charles D Johnson4, (1)Bioo Scientific, Austin, TX, (2)AgriLife Genomics and Bioinformatics Service, Texas A&M University, College Station, TX, (3)AgriLife Genomics and Bioinformatics Services, College Station, TX, (4)Texas A&M AgriLife, College Station, TX P0041: Genome Technology: High-throughput Methods - Odd Biology, Bioinformatics, Genetics and Genomic Breeding

Nikkie van Bers, Genetwister Technologies, Wageningen, Netherlands P0042: Genome Technology: High-throughput Methods - Even Detection, Characterization, and Biological Analysis of Long Tandem Repeats Using Nanochannel Technology

Saki Chan1, Weiping Wang1, Sander A Peters2, Alex Hastie1 and Han Cao1, (1)BioNano Genomics, San Diego, CA, (2)Plant Research International, Wageningen, Netherlands

207

P0043: Genome Technology: High-throughput Methods - Odd Genome and Metagenome Sequencing: Using the Human Methyl Binding Domain to Partition Genomic DNA Derived from Plant Tissues (Angiospermae)

Erbay Yigit1, David Hernandez2, Joshua Trujillo2, Eileen T Dimalanta1 and Donovan Bailey2, (1)New England Biolabs, Ipswich, MA, (2)New Mexico State University, Las Cruces, NM P0044: Genome Technology: High-throughput Methods - Even Chromosome-Scale Scaffolding of de novo Genome Assemblies Using Hi-C

Joshua N Burton, University of Washington - Department of Genome Sciences, Seattle, WA P0045: Genome Technology: High-throughput Methods - Odd High PCR Efficiency Using FASTMAG DNA Extraction Kit

Pradheep Chhalliyil, Genetic-ID, Genetic-ID Inc, Iowa and Bernd Schoel, Genetic ID NA, Inc, Fairfield, IA P0046: Genome Technology: High-throughput Methods - Even Multi-Targeted Community Profiling: Leveraging the Fluidigm Access Array and Illumina MiSeq for Metagenomic Sequencing - Microorganisms

Chris Wright1, Tatsiana Akraiko2, Alvaro Hernandez1 and Mark Band2, (1)Roy J Carver Biotechnology Center, Urbana, IL, (2)Roy J Carver Biotechnology Center, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA, Urbana, IL

P0047: Genome Technology: High-throughput Methods - Odd SNP Arrays in Crop Plants - Genotyping Services and Optimized Arrays at TraitGenetics

Jana Lemm, Joerg Plieske, Andreas Polley and Martin W Ganal, TraitGenetics GmbH, Stadt Seeland OT Gatersleben, Germany P0048: Genome Technology: High-throughput Methods - Even Efficiency Genome Assembly with the Hi-Q Enzyme on an Ion Torrent PGM Sequencing Platform

Artur Luiz Costa Silva, Universidade Federal do Pará, Belém, Brazil P0049: Genome Technology: High-throughput Methods - Odd Single Molecule, Real-Time Sequencing of Full-Length cDNA Transcripts Uncovers Novel Alternatively Spliced Isoforms

Tyson A Clark, Ting Hon and Elizabeth Tseng, Pacific Biosciences, Menlo Park, CA P0050: Genome Technology: High-throughput Methods - Even Increasing Sensitivity of Next Generation Sequencing-Based Transcriptome Profiling By Selectively Depleting Abundant RNAs in Animal and Plant Samples

Daniela B Munafo, Bradley W Langhorst, Mehul Ganatra, Christopher H Taron, Fiona J Stewart, Eileen T Dimalanta and Theodore B Davis, New England Biolabs, Ipswich, MA

P0051: Genome Technology: High-throughput Methods - Odd New Developments in the NCBI Eukaryotic Genome Annotation Pipeline

Francoise Thibaud-Nissen, National Center for Biotechnology Information (NCBI/NLM/NIH), Bethesda, MD P0052: Genome Technology: High-throughput Methods - Even DArT™ and DArTseq™ Genome Profiling for Breeding, Pre-Breeding and Population Genetics Applications

Jason Carling, Katarzyna Heller-Uszynska, Damian Jaccoud, Adriane Machado, Colleen Hopper, Ling Xia, Cina Vippin, Vanessa Caig, Grzegorz Uszynski and Andrzej Kilian, Diversity Arrays Technology, Bruce, Australia P0053: Genome Technology: High-throughput Methods - Odd KeyPoint® Mutation Breeding: A Shortcut to Improved Crops

Anker Sørensen, KeyGene, Wageningen, Netherlands P0054: Genome Technology: High-throughput Methods - Even Automated Analysis of Disease Symptoms Using LemnaTec ScanalyzerHTS

Marcus Jansen and Tino Dornbusch, LemnaTec GmbH, Aachen, Germany P0055: Genome Technology: High-throughput Methods - Odd Sequencing Plant Genomes by Combining Illumina and PacBio Technologies

Chengzhi Liang, Institute of Genetics and Developmental Biology, CAS, Beijing, China

P0056: Genome Technology: High-throughput Methods - Even iYacho: Development of Digital Field Note Application for Rapid and Accurate Plant Phenotyping

Takanari Tanabata, RIKEN Center for Sustainable Resource Science, Tsukuba, Ibaraki, Japan, Tomomori Kataoka, NARO Kyushu Okinawa Agricultural Research Center, Fukuoka, Japan, Asako Kobayashi, Fukui Agricultural Experiment Station, Fukui, Japan, Kiyosumi Hori, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan and Sachiko Isobe, Kazusa DNA Research Institute, Kisarazu, Japan P0057: Genome Technology: High-throughput Methods - Odd Phenotyping Wheat Root Architecture in 2D and 3D

Jonathan Atkinson1, Luzie U Wingen2, Marcus Griffiths1, Michael P Pound1, Shaunagh Keating1, Reshmi Gaju1, Larry M York1, Jacques Le Gouis3, Simon Griffiths2, John Foulkes1, Darren M Wells1, Malcolm J Bennett1, Julie King1 and Ian P King1, (1)The University of Nottingham, Leicestershire, United Kingdom, (2)John Innes Centre, Norwich, United Kingdom, (3)INRA GDEC, clermont ferrand, France P0058: Genome Technology: High-throughput Methods - Even Brachypodium distachyon Bd21-3 Tilling By Sequencing

YIng Rong1, Indrajit Kumar2, Kazuhiro Kikuchi1 and Thomas P Brutnell3, (1)Donald Danforth Plant Science Center, St Louis, MO, (2)Donald Danforth Plant Science Center, Saint Louis, MO, (3)Donald Danforth Plant Science Center, St Louis, MO

208

P0059: Genome Technology: High-throughput Methods - Odd Rapid Method for Soy DNA Extraction and Genotyping

Chad Collier, Bioline USA, Taunton, MA P0060: Genome Technology: High-throughput Methods - Even A Bayesian Model for Detection of High-Order Interactions Among Genetic Variants in Genome-Wide Association Studies and Its Application on Soybean Oil/Protein Traits

Juexin Wang1, Jason Vander Heiden2, Namita Gupta2, Mate Nagy2, Trupti Joshi3, Babu Valliyodan4, Haiying Shi5, Yanchun Liang1, Henry T Nguyen3, Jing Zhang6 and Dong Xu3, (1)Jilin University, Changchun, China, (2)Yale University, New Haven, CT, (3)University of Missouri, Columbia, MO, (4)University of Missouri & National Center for Soybean Biotechnology, Columbia, MO, (5)UniversityofMissouri, Columbia, MO, (6)Georgia State University, Atlanta, GA P0061: Genome Technology: High-throughput Methods - Odd Quantitative Digital and Real Time PCR for GM Alfalfa

Bernd Schoel, Genetic ID NA, Inc, Fairfield, IA and Pradheep Chhalliyil, Genetic-ID, Genetic-ID Inc, Iowa

P0062: Genome Technology: High-throughput Methods - Even Differential Methylation of Genomic Regions in Juvenile and Adult Leaves Assessed By the Application of the MethylMnM Algorithm in the Non-Model Species Eucalyptus globulus Labill

Rodrigo Jorge Hasbún1, Carolina Iturra2, Maria F Beltran G3, Macarena Arellano2, Paulina Rivas2, Marcela Stuardo2, Soraya Bravo4, Alexis Salas2, Boris Rebolledo5 and Luis Valledor6, (1)University of Concepción, Chile, Concepcion, Chile, (2)Universidad de Concepcion, Concepcion, Chile, (3)Faculty of Biological Sciences, University of Concepción, Concepcion, Chile, (4)Universidad Andrés Bello, Talcahuano, Chile, (5)The Pennsylvania State University, State College, PA, (6)Universidad de Oviedo, Oviedo, Spain P0063: Genome Technology: High-throughput Methods - Odd Viral Metagenomic Analysis of Sweet Potato Using High-Throughput Deep Sequencing

Thulile F Nhlapo, Agricultural Research Council/University of the Witwatersrand, Pretoria, South Africa P0064: Genome Technology: High-throughput Methods - Even Rape and Vegetable Seed Extractions using sbeadex on the oKtopure

Dietrich Koester and Heiko Hauser, LGC, Hoddesdon, United Kingdom

P0065: Genome Technology: High-throughput Methods - Odd The Combination of Target Enrichment and Genome Skimming (Hyb-Seq) for Phylogenetic Reconstruction of South African Oxalis (Oxalidaceae)

Roswitha Schmickl1, Aaron Liston2, Kenneth Oberlander1, Kevin Weitemier2, Vojt!ch Zeisek1, Shannon Straub3, Richard Cronn4, Léanne L Dreyer5 and Jan Suda1, (1)Czech Academy of Sciences, Pruhonice, Czech Republic, (2)Oregon State University, Corvallis, OR, (3)Hobart and William Smith Colleges, Geneva, NY, (4)USDA Forest Service Pacific Northwest Research Station, Corvallis, OR, (5)Stellenbosch University, Matieland, South Africa P0066: Genome Technology: High-throughput Methods - Even Automated RNA Purification from Salmonid Organs Using a Novel Paramagnetic Particle Technology

Kevin Kershner1, Doug Wieczorek1, Laurence Delauriere2, Eric B Vincent1 and Trista Schagat1, (1)Promega Corp, Madison, WI, (2)Promega Corporation, Charbonnieres, France P0067: Genome Technology: High-throughput Methods - Odd High-Throughput Direct DNA Analysis from Intact Fish Eggs By Real-Time PCR

Yan Wang, Bio-Rad Laboratories, Hercules, CA

P0068: Genome Technology: Large Insert Libraries - Even Best Practices for Whole Genome de novo Sequencing with Long-Read SMRT Sequencing

Kristi Spittle Kim1, Paul Peluso2, Heather Locovare2, Nick Sisneros2, David Rank2, Marty Ray Badgett2 and Jenny Gu2, (1)Pacific Biosciences, Menlo park, CA, (2)Pacific Biosciences, Menlo Park, CA P0069: Genome Technology: Large Insert Libraries - Odd Unbiased BAC Libraries Enable Genome Gap Closing and Functional Studying in the Plants and Other Species

Rosa Ye1, Md Nurul Islam2, Matt Lamprecht2, Carolyn Smith2, Cynthia Chen2 and Cheng-Cang Charles Wu2, (1)Intact Genomics, Inc, St Louis, MO, (2)Intact Genomics, Inc, St Louis, MO P0070: Genome Technology: Large Insert Libraries - Even Low Coverage BAC Libraries and BAC NGS Sequencing: A Powerful Tool for Comparative Genomics of Complex Plant Genomes

Genséric Beydon1, Nathalie Rodde1, Audrey Courtial1, Elisa Prat1, Joelle Fourment1, Nadine Gautier1, Nadege Arnal1, Justine Mas1, William Marande1, Stephane Cauet1, Arnaud Bellec1, Sonia Vautrin1, Clémentine Vitte2, Johann Joets2 and Hélène Bergès1, (1)INRA - CNRGV, Castanet Tolosan, France, (2)INRA/CNRS/Univ Paris-Sud/AgroParisTech, Gif-sur-Yvette, France

209

P0071: Genome Technology: Large Insert Libraries - Odd Closing and Finishing the Mitochondrial and Chloroplast Genomes of Sorghum Male-Sterile a1 Cytoplasm Using Long Span NGS Read Technology

Robert Richard Klein1, Scott Monsma2, Brendan Keough2, David Mead2, Ian Small3, Emma Mace4 and David R Jordan5, (1)USDA-ARS, College Station, TX, (2)Lucigen Corporation, Middleton, WI, (3)The University of Western Australia, Crawley, WA, Australia, (4)Queensland Government, Warwick, Australia, (5)University of Queensland, Warwick, Australia P0072: Genome Technology: Large Insert Libraries - Even Analysis of Illumina's Nextera Long Mate Pair Data, and Its Effects on Sequence Assembly

Bernardo Clavijo, Gonzalo Garcia and Sarah Ayling, The Genome Analysis Centre, Norwich, United Kingdom P0073: Genome Technology: Large Insert Libraries - Odd European Cuttlefish Whole Transcriptome Sequencing: A Single-Molecule Full Length Transcript Survey with Iso-Seq Method

Kim C Worley1, Jeffrey Rogers1, Yi Han1, Min Wang1, Nathan Tublitz2, Graziano Fiorito3, Cheryl Heiner4, Tyson A Clark4, Elizabeth Tseng4, Muthuswamy Raveendran1, Vanessa Vee1, Donna M Muzny1 and Richard A Gibbs1, (1)Baylor College of Medicine, Houston, TX, (2)University of Oregon, Eugene, OR, (3)Stazione Zoologica Anton Dohrn, Napoli, Italy, (4)Pacific Biosciences, Menlo Park, CA

P0074: Genome Technology: Large Insert Libraries - Even Begin at the Beginning: A BAC-End View of the Passion Fruit (Passiflora) Genome

Carla de Freitas Munhoz1, Anselmo Azevedo Santos1, Helen Alves Penha1, Arnaud Bellec2, Hélène Bergès2 and Maria Lucia Carneiro Vieira1, (1)University of São Paulo, Piracicaba, Brazil, (2)INRA - CNRGV, Castanet Tolosan, France P0075: Genome Technology: Other Genome Methodology - Odd National Resources for Computationally Intensive Genomics

Carrie L Ganote and Barbara L Hallock, Indiana University, Bloomington, IN P0076: Genome Technology: Other Genome Methodology- Even Sequencing the 5th Base of DNA, 5-Methylcytosine

Cassie A Schumacher, Swift Biosciences Inc, Ann Arbor, MI P0077: Genome Technology: Other Genome Methodology - Odd de novo Assembly of Complex Genomes Using Extremely Long Single-Molecule Imaging Technology

Weiping Wang1, Han Cao1, Ernest Lam1, Haifang Wu2, Jiang Xu3 and Jie Wu4, (1)BioNano Genomics, San Diego, CA, (2)Genergy Biotechnology (Shanghai) Co Ltd, Shanghai, China, (3)Institute of Medicinal Plant Development, CAMS & PUMC, Beijing, China, (4)Bee Research Institute of CAAS, Beijing, China

P0078: Genome Technology: Other Genome Methodology- Even Cell Sorting on a Microfluidic Chip

Roland Kilper, aura optik gmbh, Jena, Germany P0079: Genome Technology: Other Genome Methodology - Odd Veterinary Pathogen Detection and Meat Speciation using qKASP, a Novel Method for Real-Time DNA Detection

Rebecca Howard1, Alvin Lee1, Klaus Hentrich1, Wim van Haeringen2, Ynte H Schukken3 and John Holme1, (1)LGC Genomics, Hoddesdon, United Kingdom, (2)Dr Van Haeringen Laboratorium BV, Wageningen, Netherlands, (3)GD Animal Health, Deventer, Netherlands P0080: Genome Technology: Other Genome Methodology- Even Rapid and qPCR Ready DNA Isolation from Environmental and Human Bodily Fluid Samples using Magnetic Bead System

Won-Sik KIM, Norgen Biotek Corporation, Thorold, ON, Canada P0081: Genome Technology: Other Genome Methodology - Odd Genotyping-in-Thousands By Sequencing (GT-seq): A Cost Effective SNP Genotyping Method Based on Custom Amplicon Sequencing - Rainbow Trout

Nathan Campbell, Shawn Narum and Stephanie Harmon, Columbia River Inter-Tribal Fish Commission, Hagerman, ID

P0082: Genome Technology: Other Genome Methodology- Even Recombinase-Mediated Cassette Exchange (RMCE) for Gene-Stacking in Saccharomyces cerevisiae

Sara K Hotton1, Meridith Cook2 and James Thomson2, (1)University of California - Davis, Albany, CA, (2)USDA-WRRC, Albany, CA P0083: Genome Technology: Other Genome Methodology - Odd Development of the Maxwell® 16 Lev Plant DNA Kit, and Its Application to Plant Leaf Tissues

Chris Moreland, Promega, Madison, WI P0084: Genome Technology: Other Genome Methodology- Even PCR-Based SNP Genotyping Assay Development for Plant and Animal Genomic Research

Cassie Keppel and Luke Linz, Douglas Scientific, Alexandria, MN P0085: Genome Technology: Other Genome Methodology - Odd Comparison of GWS Methods for the Selection of Higher Individuals

Leonardo Lopes Bhering1, Leonardo de Azevedo Peixoto1, Vinicius Junqueira1, Cosme Damião Cruz1 and Bruno Galvêas Laviola2, (1)Universidade Federal de Viçosa, Viçosa, Brazil, (2)Embrapa Agroenergy, Brasília, Brazil P0086: Genome Technology: Other Genome Methodology- Even Representative DNA Amplification from Single Plant Chromosomes

Petr Capal, Nicolas Blavet, Jan Vrana, Marie Kubalakova and Jaroslav Dolezel, Institute of Experimental Botany, Olomouc, Czech Republic

210

P0087: Genome Technology: Other Genome Methodology - Odd Molecular Evolution for the Development of an Inhibitor-Resistant DNA Polymerase for Improved Target Amplification and Quantification of Crude Samples with Real-Time PCR

Charles Joseph, Kapa Biosystems, Wilmington, MA P0088: Genome Technology: Other Genome Methodology- Even Targeting of Meiotic Recombination

Giacomo Bastianelli, MEIOGENIX, Paris, France and Alain Nicolas, Institut Curie, Paris, France P0089: Genome Technology: Other Genome Methodology - Odd A DNA-Based Biosensor for Wine Authenticity

Luis Moreira1, Helena Gonçalves1, Maria Leonor Pereira2, Pedro Jorge3, José RA Fernandes3 and Paula Filomena Martins-Lopes2, (1)University of Trás-os-Montes and Alto Douro, Vila Real, Portugal, (2)IBB-CGB, University of Trás-os-Montes and Alto Douro, Vila Real, Portugal, (3)INESC-TEC, Porto, PA, Portugal P0090: Genome Technology: Other Genome Methodology- Even Male Apomixis: An Alternative Strategy to Synthetically Engineer Clonal Seed Formation in Plants

Nico De Storme, Ghent University, Gent, Belgium

P0091: Genome Technology: Other Genome Methodology - Odd A Small Serine Recombination System CinH for Precise Excision of Plastid DNA

MIN Shao, University of California, Davis, Albany, CA and James Thomson, USDA-WRRC, Albany, CA P0092: Genome Technology: Other Genome Methodology- Even Indirect Monitoring of Engineered Nuclease Activity for Target Gene Modification in Petunia

Geung-Joo Lee1, Sung Jin Chung1 and Sangsu Bae2, (1)Chungnam National University, Daejeon, South Korea, (2)Seoul National Univeristy, Seoul, South Korea P0093: Genome Technology: Other Genome Methodology - Odd Gene Targeting of 5-Enolpyruvylshikimate-3-phosphate Synthase and Acetolactate Synthase for Transgene-Free Herbicide Resistance in Cassava

Aaron Hummel1, Raj D Chauhan2, Anupama Vijayaraghavan2, Andrew Mutka2, Nigel J Taylor2, Rebecca Bart2 and Dan Voytas1, (1)University of Minnesota, St Paul, MN, (2)Donald Danforth Plant Science Center, St Louis, MO P0094: Genome Technology: Other Genome Methodology- Even TALENs and CRISPR/Cas9 System for Targeted Genome Modification in Maize

Chao Feng, Jing Yuan and Fangpu Han, Chinese Academy of Sciences, Beijing, China

P0095: Genome Technology: Other Genome Methodology - Odd Inclusion of Dominance and GxE Effects in Genomic Selection Model to Improves Predictive Ability

Joao F Rodrigues Guimaraes1, Janeo Almeida Filho1, Rodrigo Furtado dos Santos1, Marcio F Resende Jr1, Patricio R Munoz2 and Matias Kirst1, (1)University of Florida, Gainesville, FL, (2)University of Florida, Agronomy Department, Gainesville, FL P0096: Genome Technology: Other Genome Methodology- Even Purification of Amplifiable Nucleic Acid from Oil Palm and Rice Leaves and Seeds Using a Small Benchtop Automated Instrument

Trista Schagat, Promega Corp, Madison, WI P0097: Genome Technology: Other Genome Methodology - Odd Using Spinach to Compare Technologies for Whole Genome Assemblies

Allen Van Deynze1, Hamid Ashrafi1, Luke Hickey2, Paul Peluso2, David Rank2, Jason Chin2, Nicole Rapicavoli3, James Drake2, Tyler Garvin4 and Michael Schatz5, (1)Seed Biotechnology Center, University of California, Davis, CA, (2)Pacific Biosciences, Menlo Park, CA, (3)Pacific Biosciences, Menlo park, CA, (4)Cold Spring Harbor Laboratory, NY 11724, NY, (5)Cold Spring Harbor Laboratory, Cold Spring Harbor, NY

P0098: Marker Systems Diversity: SSR - Even Segregation Analysis of Microsatellite (SSR) Markers in Sugarcane Polyploids

Yong-Bao Pan1, Xin Lu2, Hui Zhou3, Charles Y Chen4, Jianrong Zhu2, Pinghua Chen5, Qing Cai2 and Ru-Kai Chen5, (1)USDA-ARS, MSA, SRU, Houma, LA 70360, USA, Houma, LA, (2)Yunnan Sugarcane Research Institute, Yunnan Academy of Agricultural Sciences, Kaiyuan, Yunnan, China, (3)Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China, (4)Department of Crop, Soil and Environmental Sciences, Auburn University, Auburn, AL, (5)Sugarcane Research Institute, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China P0099: Marker Systems Diversity: SSR - Odd Sequence Alignment Status and Amplicon Size Difference Affecting EST-SSR Primer Performance and Polymorphism

Chunxian Chen, USDA-ARS, SEFNRL, Byron, GA P0100: Marker Systems Diversity: SSR - Even Comparison of the Sequence Simple Repeats (SSR) Fragments Between the Genetic Maps and the Physical Map in Chickpea (Cicer arietinum)

Aladdin Hamwieh, ICARDA, Cairo, Egypt, Ayed Al Abdallat, International Center for Agricultural Research in the Dry Areas, Amman, Jordan and Al-Samman Al-Samman, AGERI, ARC Cairo, Cairo, Egypt

211

P0101: Marker Systems Diversity: SSR - Odd Development of a Database (BARCPvSSR_10) Containing Candidate Polymorphic Simple Sequence Repeat (SSR) Markers in Common Bean

Qijian Song, USDA-ARS- BARC-west, Beltsville, MD, Gaofeng Jia, USDA-ARS, BARC, Beltsville, MD, Josiane Isabela da Silva Rodrigues, Brazilian Agricultural Research Corporation, PB, Brazil and Perry Cregan, USDA-ARS, Soybean Genomics and Improvement Lab, Beltsville, MD P0102: Marker Systems Diversity: SSR - Even Both GBS- and SSR Marker-Based QTL Mapping of Downy Mildew Resistance in Cucumber

Sanghyeob Lee, Sejong University, Seoul, South Korea P0103: Marker Systems Diversity: SSR - Odd High-Throughput SSR Marker Development in Korean Pear Using Next-Generation Sequencing

Youngjae Oh1, Seolah Kim1, Hyunsuk Shin1, Jungyeon Won1, Sewon Oh1, Yoon-Kyeong Kim2 and Daeil Kim1, (1)Chungbuk National University, Cheongju, South Korea, (2)National Institute of Horticultural & Herbal Science, Naju, South Korea P0104: Marker Systems Diversity: SSR - Even Development and Characterization of Expressed SSRs in Olive (Olea europaea L)

Alenka Baruca Arbeiter1, Jernej Jakse2 and Dunja Bandelj1, (1)University of Primorska, Koper, Slovenia, (2)University of Ljubljana, Biotechnical Faculty, Agronomy Department, Ljubljana, Slovenia

P0105: Marker Systems Diversity: SNP - Odd Cost-Effective Implementation of Genomic Selection By Subsetting SNP Markers

Luiz A Peternelli, Federal University of Vicosa, Vicosa, MG, Brazil and Guilherme J M Rosa, University of Wisconsin, Madison, WI P0106: Marker Systems Diversity: SNP - Even Keygene® SNPSelect: Genotyping up to 8 Million SNP Datapoints per Sequencing Run

Michiel van Eijk, KeyGene, Wageningen, Netherlands P0107: Marker Systems Diversity: SNP - Odd Cost Effective Resequencing for Association Genetics in Ryegrass Utilising a Modified Illumina NGS Work-Flow

Hiroshi Shinozuka1, Luke Pembleton1, Maiko Shinozuka1, Bec Baillie1, Michelle Drayton1, Noel O I Cogan1, Colin A Denver2, Clint Trapp2, Chad Collier2 and Lopeti T Lavulo2, (1)Department of Environment and Primary Industries, Bundoora, Australia, (2)Bioline, Alexandria, Australia P0108: Marker Systems Diversity: SNP - Even Genetic Diversity, Population Structure and Linkage Disequilibrium in Brassica napus l Germplasm and Its Implication for Association Mapping

Mukhlesur Rahman, North Dakota State University, Fargo, ND

P0109: Marker Systems Diversity: SNP - Odd Application of NGS-Generated SNP Data to Complex Crops Studies: The Example of Musa spp

Yann Hueber1, Julie Sardos1, Eva H"ibová2, Ines Van den houwe3, Nicolas Roux1 and Mathieu Rouard1, (1)Bioversity International, Montpellier, France, (2)Institute of Experimental Botany, Prague, Czech Republic, (3)Bioversity International Transit Center, Heverlee, Belgium P0110: Marker Systems Diversity: SNP - Even Genotyping-By-Sequencing (GBS) Using a Semiconductor Sequencing Platform

Shan Wang, Department of Agronomy, Kansas State Unversity, Manhattan, KS, Cai Jin, Agronomy Department, Kansas State University, Manhattan, KS, Yue Lu, Kansas State University Agronomy Department, Manhattan, KS and Guihua Bai, USDA/ARS, Manhattan, KS P0111: Marker Systems Diversity: SNP - Odd A Comparative Evaluation of SNP Genotyping Assay Chemistries in Atlantic Salmon

Ciaran Meghen1, Marc Farrelly2, Janika Higgins2, David Vaske1 and Stacie H Eliades-Becker1, (1)IdentiGEN, Lawrence, KS, (2)IdentiGEN Ltd, Dublin, Ireland

P0112: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even Metabolic Fingerprinting of Microorganisms Presenting in Fermentative Process of Ethanol

Mariana Souza Silva, Ilara G Bundzinsk, Thais Regiani, Fabrício E Moraes and Carlos A Labate, ESALQ/USP, Piracicaba, Brazil P0113: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd The Effect of Gallic Acid on Gene Expression in Gastric Adenocarcinoma

Heather J Axen1, Stephanie Liptak1, Rhiannon Morrissey1, Kari Clifton1, Songhua Zhang2, Steven Moss3 and John David Swanson1, (1)Salve Regina University, Newport, RI, (2)Brown University, Providence, RI, (3)Rhode Island Hospital, Providence, RI P0114: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even Ex Vivo Expression of Genes Related to Innate and Adaptive Immunity in Cow, Sheep and Goat Neutrophils

Mulumebet Worku, North Carolina A&T State University, Greensboro, NC

212

P0115: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Expression Comparison of Phenylalanine Ammonia-lyase Gene in Scab Resistant and Susceptible Wheat Cultivars in response to Fusarium graminearum infection

Mona Sorahi Nobar1, Vahid Niknam1, Samira Imani2, Hassan Ebrahimzadeh1 and Hassan Soltanloo2, (1)University of Tehran, Tehran, Iran, (2)University of Agricultural Sciences and Natural Resources, Gorgan, Iran P0116: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even Connecting the Transcriptome, microRNAs, and the Proteome in Tail Regeneration of the Green Anole Lizard, Anolis carolinensis

Elizabeth D Hutchins1, Walter L Eckalbar1, Ken Pendarvis2, Fiona McCarthy2, Douglas F Lake1 and Kenro Kusumi1, (1)Arizona State University, Tempe, AZ, (2)University of Arizona, Tucson, AZ P0117: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Human-Specific Changes in the Biology of Siglecs and Their Relevance for Host–Microbe Interactions

Flavio Schwarz, University of California, San Diego, La Jolla, CA

P0118: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even Developing Germline Markers for a Species That Undergoes Programmed Genome Rearrangement

Sarah E Whelan and Jeramiah J Smith, University of Kentucky, Lexington, KY P0119: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd MicroRNA Expression Profiling in Tonsils of Calves Challenged with a Laboratory Strain or Field Isolates of Bovine Respiratory Syncytial Virus

Eduardo Casas, Guohong Cai, Jodi L McGill, Mitchell V Palmer, Robert E Briggs and Randy E Sacco, NADC-ARS-USDA, Ames, IA P0120: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even Small RNA Expression in Lamprey Embryogenesis During Programmed Genome Rearrangement

Lisa M Taylor1, Joseph R Herdy2 and Jeramiah J Smith1, (1)University of Kentucky, Lexington, KY, (2)Salk Institute for Biological Studies, La Jolla, CA

P0121: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Transcriptional Profiling of Post-Hatch Breast Muscle Development in Legacy and Modern Broiler Chickens (Gallus gallus)

Richard VN Davis1, Susan J Lamont2, Max F Rothschild2, Michael E Persia3, Chris M Ashwell4 and Carl J Schmidt1, (1)University of Delaware, Newark, DE, (2)Iowa State University, Ames, IA, (3)Virginia Tech, Blacksburg, VA, (4)North Carolina State University, Raleigh, NC P0122: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even Characterization of Somatically-Eliminated Genes in the Sea Lamprey

Stephanie A Bryant and Jeramiah J Smith, University of Kentucky, Lexington, KY P0123: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Distinct Recruitment Mechanisms for Aub and Ago3 to Nuage Lead to Functional Compartmentalization of the Pirna Pathway in Drosophila

Alexandre Webster and Alexei Aravin, California Institute of Technology, Pasadena, CA P0124: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even Evolution of Vertebrate Myelin-Associated Proteins: Insights from a Basal Vertebrate (Sea Lamprey - Petromyzon marinus)

Kalen Nicole Wright and Jeramiah J Smith, University of Kentucky, Lexington, KY

P0125: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Targeting microRNAs for Destruction in Crop Plants By Short Tandem Target Mimic (STTM)

Sachin Teotia, Ting Peng, Haiping Liu, Mengmeng Qiao, Lina Shi and Guiliang Tang, Michigan Technological University, Houghton, MI P0126: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even Evolution of C4 Photosynthesis: The Role of Low CO2 Environment

Xinguang Zhu, CAS-MPG Partner Institute for Computational Biology,Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China P0127: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Rice microRNAs Profiling in Response to Nitrogen-Resupplied Condition

Sang-yoon Shin, Dooyoung Lee and Chanseok Shin, Seoul National University, Seoul, South Korea P0128: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even Deep Sequencing of Cold-Acclimated Wheat Crown Transcriptome

Debbie Laudencia-Chingcuanco, USDA ARS WRRC, Albany, CA and D Brian Fowler, University of Saskatchewan, Saskatoon, SK, SK, Canada

213

P0129: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Exploring Metabolic Networks: Metacyc and SolCyc as Examples for High-Level Data Curation, Depository and Management Across and within Species

Hartmut Foerster1, Lukas Mueller1, Noe Fernandez-Pozo1, Aureliano Bombarely2, Ron Caspi3 and Peter D Karp3, (1)Boyce Thompson Institute for Plant Research, Ithaca, NY, (2)Virginia Polytechnic Institute and State University, Department of Horticulture, Blacksburg, VA, (3)SRI International, Menlo Park, CA P0130: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even Changes in the Wheat Primary Metabolism during Defense Against Fusarium graminearum

Wolfgang Schweiger1, Karl G Kugler2, Thomas Nussbaumer2, Sapna Sharma3, Benedikt Warth4, Alexandra Parich5, Marc Lemmens5, Gerhard Adam6, Rainer Schuhmacher5, Klaus F X Mayer7 and Hermann Bürstmayr8, (1)BOKU - University of Natural Resources and Life Sciences, Tulln, Austria, (2)MIPS/IBIS, Helmholtz Center Munich, Munich, Germany, (3)Institute of Bioinformatics & Systems Biology, MIPS, Neuherberg, Germany, (4)BOKU, Dept IFA-Tulln, Tulina, Austria, (5)BOKU, Dept IFA-Tulln, Tulin, Austria, (6)BOKU, Tulin, Austria, (7)Plant Genome and Systems Biology, Helmholtz Center Munich, Neuherberg, Germany, (8)BOKU, Dept IFA-Tulln, Tulin, Australia

P0131: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Transcriptome Analysis of a cbf3 Mutant By RNA-Seq in Brachypodium distachyon

Jingjie Hao1, Jiangli Dong2, Jinliang Yang3 and Shui-zhang Fei1, (1)Iowa State University, Ames, IA, (2)China Agricultural University, Beijing, China, (3)University of California-Davis, Davis, CA P0132: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even de novo Transcriptome Assembly and Differential Gene Expression Profiling of Anthocyanin Biosynthesis in Zoysiagrass (Zoysia japonica Steud)

Jong Hwa Ahn1, June-Sik Kim2, Seungill Kim2, Hye Yeon Soh1, Hosub Shin1, Ju Hyun Ryu1, Ki Sun Kim2, Doil Choi3 and Jin Hoe Huh2, (1)Department of plant science, SNU, Seoul, South Korea, (2)Seoul National University, Seoul, South Korea, (3)Department of plant science, PGBI of CALS, SNU, Seoul, South Korea P0133: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Comparative Analysis of Homoeoallele Expression in the Tocol Biosynthetic Pathway during Oat Seed Development

Juan J Gutierrez-Gonzalez, University of Minnesota, Saint Paul, MN and David F Garvin, USDA-ARS, PSRU, St Paul, MN

P0134: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even Divergent Epicuticular Wax and Transcriptomes of Edaphically Differentiated Andropogon Grasses in US Midwest Prairies

Loretta C Johnson1, Jennifer Shelton2, Nora Bello3, Matthew Galliart4, Seth Raithel5, Susan Brown6, Nicolae Herndon2, Ruth Welti7, Basil Nikolau8, Zhihong Song8, Thilani Samarkoon7 and Richard Jeanotte9, (1)Kansas state university, Manhattan, KS, (2)Kansas State University, Bioinformatics Center, Manhattan, KS, (3)Kansas State University, Department of Statistics, Manhattan, KS, (4)Kansas State University, Manhattan, KS, (5)Kansas State University, Statistics Department, Manhattan, KS, (6)Kansas State University, KSU Bioinformatics Center, Manhattan, KS, (7)Kansas State University, Biology DIvision, Manhattan, KS, (8)Biochemistry, Biophysics & Molecular Biology, Ames, IA, (9)School of Veterinary Medicine, Davis, CA P0135: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Expression of Proteins Involved in Host Plant Defense Against Greenbug Infestation

Yinghua Huang1, Kejing Xu2, Lei Chen2 and Chaoyin Yue2, (1)USDA ARS, Stillwater, OK, (2)China Three Gorges University, Yichang, China

P0136: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even The Analysis of the Relationship Between Gene Expression and Production of Resveratrol in Wild Species of Genus Arachis

Paula V Carvalho1, Ana C M Brasileiro2, Soraya C M Leal-Bertioli3, Joseane Padilha4, Agostini-Costa Tânia5 and Marcos A Gimenes5, (1)Universidade Estadual Paulista - UNESP, Brazil, Brasília, Brazil, (2)EMBRAPA Recursos Genéticos e Biotecnologia, Brasília, Brazil, (3)Embrapa Genetic Resources&Biotech, Brasilia, Brazil, (4)Embrapa, Brasília, Brazil, (5)Embrapa Genetic Resources and Biotechnology, Brasília, Brazil P0137: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Transcriptome Profiling of Rust Resistance in Switchgrass Using RNA-Seq Analysis

Desalegn Serba, Srinavasa R Uppalapati, Shreyartha Mukherjee, Nick Krom, Yuhong Tang, Kirankumar S Mysore and Malay C Saha, The Samuel Roberts Noble Foundation, Ardmore, OK P0138: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even Cell-Type Specific Metabolomic Analysis of White Clover Leaves

Samira Rahimi Ashtiani1, Sareena Sahab2, Stephen Panter3, Yongjin Shang2, Simone Rochfort3, John G Mason4 and German Spangenberg1, (1)Department of Environment and Primary Industries, La Trobe University, Melbourne, Australia, (2)Department of Environment and Primary Industries, Melbourne, Australia, (3)Department of Environment and Primary Industries, Bundoora, Australia, (4)Department of Environment and Primary Industries, Bundoora, Victoria, Australia

214

P0139: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Engineering Cassava for High Beta Carotene and Understanding the Impact of Other Metabolic Genes in Carotenoid Pathway

Jackson Gehan, Donald Danforth Plant Science Center, St Louis, MO P0140: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even Chemical Genomics of the Plant Immune System in Arabidopsis thaliana and Development of Novel Non-Biocidal Reduced Risk-Pesticides

Yasemin Bektas, Melinda Rodriguez-Salus, Mercedes Schroeder, Isgouhi Kaloshian and Thomas Eulgem, University of California - Riverside, Riverside, CA P0141: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Mow Me! Red Clover Transcriptomics to Understand Phenotypic Changes Under Different Land Use Scenarios

Denise Herbert1, Annette Becker2, Oliver Rupp1 and Alexander Goesmann1, (1)Justus-Liebig-University, Gießen, Germany, (2)Justus-Liebig-University Gießen, Gießen, Germany P0142: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even Direct Signaling Crosstalk Between Brassinosteroid and Abscisic Acid Regulates Root Growth Maintenance during Water Deficits in Soybean

Li Lin, University of Missouri, Columbia, MO

P0143: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Ribosomal Assembly Genes in Arabidopsis thaliana

Naghabushana K Nayidu, University of Saskatchewan, Saskatoon, SK, Canada and Peta Bonham-Smith, University of saskatchewan, saskatoon, SK, Canada P0144: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even A New RNA-Seq Method Reveals Plant Defence Responses at Higher Resolution

Walter Verweij and Matt Clark, The Genome Analysis Centre, Norwich, United Kingdom P0145: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Genome-Wide Variation in Polyadenylation Site Usage and Association Mapping in Arabidopsis MAGIC Founders

Li Lei1, Joshua G Steffen2, Robert Greenhalgh3, Edward J Osborne3, Philipp Drewe4, Andre Kahles4, Gunnar Rätsch4, Richard Mott5, Richard M Clark3 and Christopher Toomajian1, (1)Kansas State University, Manhattan, KS, (2)Colby-Sawyer College, New London, NH, (3)University of Utah, Salt Lake City, UT, (4)Memorial Sloan-Kettering Cancer Center, New York, NY, (5)The Wellcome Trust Centre for Human Genetics, Oxford, United Kingdom

P0146: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even Physiogenomics of European Pear Ripening (Pyrus communis L)

Christopher Hendrickson1, Mark Swanson1, Todd Einhorn2 and Amit Dhingra3, (1)Washington State University, Pullman, WA, (2)Horticulture, Oregon State University , Hood River, OR, (3)Department of Horticulture, Washington State University, Pullman, WA P0147: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd RAR1 is Involved in an Effector-Induced Protein Phosphorylation in Arabidopsis

Jun Liu, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China P0148: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even A Novel Framework for the Identification and Characterization of Putative Positive and Negative cis-Acting Regulatory Elements in Arabidopsis thaliana

Piotr Gawronski1, Piotr Bilski2, Jakub Weclawski2 and Stanislaw Karpinski1, (1)Warsaw University of Life Sciences, Warszawa, Poland, (2)Warsaw University of Technology, Warszawa, Poland

P0149: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd The Implication of Phenolic Acids in the Development of Prickles from the Glandular Trichomes of Raspberries, Roses, and Rose Hips

Meaghan Trzasko and John David Swanson, Salve Regina University, Newport, RI P0150: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even Analysis of cis-Regulatory Elements of Crassulacean Acid Metabolism (CAM) Genes in Kalanchoe laxiflora

Jungmin Ha1, Won Cheol Yim2, Sung DON LIM1, James Hartwell3, Xiaohan Yang4 and John C Cushman2, (1)University of Nevada, Reno, Reno, NV, (2)Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Reno, NV, (3)University of Liverpool, Liverpool, United Kingdom, (4)Oak Ridge National Laboratory, Oak Ridge, TN P0151: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Cold and Freezing Stress Responsive Gene Identification and Expression Profiling in Brassica oleracea

Nasar Uddin Ahmed1, Jong-In Park2, Hee-Jeong Jung1 and Illsup Nou1, (1)Sunchon National University, Suncheon, South Korea, (2)Depertment of Horticulture, Sunchon National University, Suncheon, South Korea

215

P0152: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even Transcriptomic Analysis of Cadmium Hyperaccumulation and Hypertolerance in Sedum plumbizincicola

Jia-Shi Peng, Yue-Jun Wang, Hai-Ling Ma, Yi-Jing Zhang and Ji-Ming Gong, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China P0153: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Volatile Methyl Jasmonate Is a Transmissible Form of Jasmonate and Its Biosynthesis Regulates Systemic Jasmonate Response in Wounding

Tae Young Um, Han Yong Lee and Yang Do Choi, Department of Agricultural Biotechnology Seoul National University, Seoul, South Korea P0154: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even de novo Transcriptome Analysis Reveals the Molecular Components of Floral Scent Production in Thermogenic Arum concinnatum

Yoshihiko Onda1, Keiichi Mochida1, Takuhiro Yoshida1, Tetsuya Sakurai1, Roger Seymour2, Yui Umekawa3, Stergios Arg Pirintsos4, Kazuo Shinozaki1 and Kikukatsu Ito3, (1)RIKEN CSRS, Yokohama, Japan, (2)University of Adelaide, Adelaide, Australia, (3)Iwate University, Morioka, Japan, (4)University of Crete, Crete, Greece

P0155: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Uncovering Transcriptional Gene Regulatory Networks Operating in the Facultative CAM Species, Mesembryanthemum crystallinum

Bernard W M Wone1, Won Cheol Yim1, Rebecca L Albion1, Karen A Schlauch2 and John C Cushman1, (1)Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Reno, NV, (2)Nevada Center for Bioinformatics, University of Nevada, Reno, Reno, NV P0156: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even Genome-Wide Sequence and Expression Analysis of Functional Genes in the Genome of Jilin Ginseng, Panax ginseng CA Mey

Kangyu Wang1, Yi Wang1, Shicui Jiang1, Yanfang Wang1, Rui Yin1, Chunyu Sun1, Hong-Bin Zhang2 and Meiping Zhang1, (1)Jilin Agricultural University, Changchun, China, (2)Texas A&M University, College Station, TX P0157: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Glyphosate-Induced Branching in Leafy Spurge Involves Complex Interactions Associated with Cellular Transport, Phytohormone Signaling, and Meristem Maintenance

Munevver Dogramaci, Michael E Foley, David P Horvath and James V Anderson, USDA-ARS, Fargo, ND

P0158: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even Isolation and Identification of a Peroxidase (TcPOD1) of Tamarix chinensis, a Gene in the Phenylalanine Metabolic Pathway, and Its Potential Role in Salt Tolerance

Nicole T Mihelich, University of Wisconsin-Madison, Madison, WI P0159: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Variations of Gene Expression in the Formation of Macroalgal Blooms in Ulva rigida and Ulva compressa in Narraganset Bay, RI

Morgan C Smith1, Noe B Mercado1, John David Swanson1 and Carol Thornber2, (1)Salve Regina University, Newport, RI, (2)University of Rhode Island, Kingston, RI P0160: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even UGT74S1 Is Unique in Controlling Secoisolariciresinol Diglucoside (SDG) Formation in Flax

Bourlaye Fofana1, Kaushik Ghose1, Frank M You2 and Sylvie Cloutier3, (1)Agriculture and Agri-Food Canada, Charlottetown, PE, Canada, (2)Agriculture and Agri-Food Canada, Morden, MB, Canada, (3)Agriculture and Agri-Food Canada, Ottawa, ON, Canada

P0161: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Changes in the Molecular Function Pathways of Ulva rigida throughout the Blooming Season

Megan Sylvia1, Morgan C Smith1, Carol Thornber2 and John David Swanson1, (1)Salve Regina University, Newport, RI, (2)University of Rhode Island, Kingston, RI P0162: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Genome Wide Gene Associated Differential Methylation Pattern in Humans

Meenu Joshi, University of Kwazulu-Natal, Durban, South Africa and Dyfed Evans, University of KwaZulu-Natal, Durban, South Africa P0163: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd The PlantSEED Resource for Functional Annotation and Metabolic Modeling of Plant Genomes and the Generation of Tissue-Specific Metabolic Models

Samuel M D Seaver, Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL

216

P0164: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even De novo Assembly of Perilla citriodora for Gene Discovery Using RNA-Seq

Sung-Hwan Jo1, Jeong-Hee Lee1, Junkyoung Choe1, Ji-Eun Kim1, Sangmi Kim1, Bo Mi Lee1, Myoung Hee Lee2 and Tae-Ho Kim3, (1)SEEDERS Inc, Daejeon, South Korea, (2)National Insistute of Crop Science, RDA, Miryang, South Korea, (3)National Academy of Agricutural Science(NAAS), suwon, South Korea P0165: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Investigating Maternal Residual Feed Intake and Diet Interactions on Myogenic Gene Expression in Newborn Calves

Christina T Straathof1, Gervais Muhire2, Francois Paradis2, Hushton Block3, Marcos G Colazo4, Barry Yaremcio5, Changxi Li2, Heather L Bruce2 and Carolyn Fitzsimmons2, (1)Univerisy of Alberta, Edmonton, AB, Canada, (2)University of Alberta, Edmonton, AB, Canada, (3)Agriculture and Agri-Food Canada, Lacombe, AB, Canada, (4)Agriculture and Agri-Food Canada, Edmonton, AB, Canada, (5)Agricultre and Agri-Food Canada, Stettler, AB, Canada P0166: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Non-Invasive Biomarkers of Embryo Development in Cattle

Jenna Kropp, University of Wisconsin, Madison, WI and Hasan Khatib, University of Wisconsin Madison, Madison, WI

P0167: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Sampling Site Effects on Bronchoalveolar Lavage Fluid Protein Expression in Bovine Respiratory Disease: A Proteomic Analysis

Aswathy N Rai1, Leslie A Shack1, Joseph S Reddy1, Wes Baumgartner1, William Epperson1, Ty B Schmidt2 and Bindu Nanduri1, (1)College of Veterinary Medicine, Mississippi State University, Mississippi State, MS, (2)University of Nebraska- Lincoln, Lincoln, NE P0168: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Integrated Muscle Analysis of Transcriptome and Proteome of Piglet Maturity

Valentin Voillet1, Magali San Cristobal1, Marie-Christine Père2, Laurianne Canario1, Yvon Billon3, Louis Lefaucheur2 and Laurence Liaubet1, (1)INRA UMR1388 Génétique, Physiologie et Systèmes d’Elevage, Castanet, France, (2)INRA UMR1348 Physiologie, Environnement et Génétique pour l'Animal et les Systèmes d'Élevage, Saint-Gilles, France, (3)INRA, UE1372 GenESI, Saint-Pierre-d'Amilly, France P0169: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Intrinsic Response to Hypoxic Stress Associated with Cellular Metabolism and Inflammation in Beef Cattle

Rebecca Cockrum1, Chelsee Holloway1, Xi Zeng2, Natalie F Berge2, Joe M Neary3, Tim Holt2, Harvey Blackburn4, Scott E Speidel2, Richard M Enns2 and Milton Thomas2, (1)Virginia Polytechnic Institute and State University, Blacksburg, VA, (2)Colorado State University, Fort Collins, CO, (3)Texas Tech University, Lubbock, TX, (4)National Center for Genetic Resources Preservation, USDA, Fort Collins, CO

P0170: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Differential Expression Analysis of Placentae from Overfed/Obese Ewes and Lean Ewes Fed Only to Requirements

Stephanie M Guida1, Joann Mudge1, Connor T Cameron1, Ingrid E Lindquist1, Craig W Beattie1, Wansheng Liu2 and Stephen P Ford3, (1)National Center for Genome Resources (NCGR), Santa Fe, NM, (2)Department of Animal Science, Penn State University, University Park, PA, (3)University of Wyoming, Laramie, WY P0171: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Functional Analysis of microRNAs:mRNA Interactions Between Pseudorabies Virus (PrV) and Its Natural Pig Host

Sophie Dhorne-Pollet1, Guillemette Marot2, Jérôme Lecardonnel1, Marco Moroldo1, Florence Jaffrezic1 and Elisabetta Giuffra1, (1)Institut National de la Recherche Agronomique, AgroParisTech, UMR1313 Génétique Animale et Biologie Intégrative, Jouy-en-Josas, France, (2)Université Lille 2, Inria Lille Nord Europe, Lille, France P0172: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even A Comprehensive Transcriptome Profiling Across Six Wool Follicle Developmental Stages of Chinese Merino Sheep

Wenrong Li, Sangang He, Lei Chen, Shudong Liu, Zhilong Liu and Mingjun Liu, Xinjiang Academy of Animal Science, Urumqi, China

P0173: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Proteomics Analysis of Breast Muscle Tissue Associated with the Phenotypic Expression of Feed Efficiency in a Single Male Broiler Line

Byung-Whi Kong1, Kentu Lassiter1, Devin Cook1, Alissa Piekarski1, Sami Dridi1, Nicholas James Hudson2 and Walter Bottje1, (1)University of Arkansas, Fayetteville, AR, (2)CSIRO Animal, Food and Health Sciences, Brisbane, Australia P0174: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even FHL3 Differentially Regulates Expression of Four MyHC Isoforms through Interaction with MyoD and CREB

Bo Zuo, College of Animal Science, Huazhong Agricultural University, Wuhan, China P0175: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Quantitative Proteomics Analysis of Duck Eggshell during Biomineralization

Feng Zhu, China Agricultural University, BeiJing, China and Zhuocheng Hou, China Agricultural University, Beijing, China

217

P0176: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Age Effects on Gene Expression Related to the Bacterial Chondronecrosis with Osteomyelitis in Broiler

Mauricio Egidio Cantao1, Ricardo Zanella2, Jane de Oliveira Peixoto1, Adriana Mercia Guaratini Ibelli1, Jose Rodrigo Pandolfi1, Matthew Settles3 and Monica Correa Ledur1, (1)Embrapa Swine and Poultry, Concordia, Brazil, (2)CNPq/BJT at Embrapa Swine and Poultry, Concordia, Brazil, (3)University of Idaho, Moscow, ID P0177: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Effects of Internal Space Increase on Catalase and Defensin Gene Expression and Honey Production in Africanized Apis mellifera Honeybees

Juliana M Costa1, Samir M Kadri1, Paulo E Martins Ribolla2, Diego P Alonso3 and Ricardo O Orsi1, (1)University of Veterinary Medicine and Animal Sciences - UNESP, Botucatu, Brazil, (2)IBB - UNESP - Department of Parasitology, Botucatu, Brazil, (3)Department of Parasitology - IBB/UNESP, Botucatu, Brazil P0178: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Role of Mir-145 and Mir-181 in Nile Tilapia (Oreochromis niloticus) Sex Differentiation

Juliana Giusti, Sao Paulo State University - UNESP, Cajamar, Brazil

P0179: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd The Complex Trait of C4 Photosynthesis Analyzed in Nine Independent Origins - Angiosperms

Andrea Braeutigam1, P a Christin2, Samantha Kurz3, Richard Leegood2, Colin P Osborne2, M Eric Schranz4, Stefanie Sultmanis5, Tammy L Sage6, Rowan F Sage5, Julian M Hibberd7, Udo Gowik8, Peter Westhoff8, Jean-Marie Droz9 and Andreas P M Weber1, (1)Plant Biochemistry (CEPLAS) Heinrich Heine University Düsseldorf, Duesseldorf, Germany, (2)Department of Animal and Plant Sciences Sheffield University, Sheffield, United Kingdom, (3)Heinrich Heine University Düsseldorf, Duesseldorf, Germany, (4)Wageningen University and Research, Wageningen, Netherlands, (5)Ecology & Evolutionary Biology, University of Toronto, Toronto, ON, Canada, (6)Department of Ecology and Evolutionary Biology University of Toronto, Toronto, ON, Canada, (7)University of Cambridge, Cambridge, United Kingdom, (8)Developmental and Molecular Biology of Plants HHU Duesseldorf, Duesseldorf, Germany, (9)Nebion AG, Zurich, Switzerland P0180: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Characterization of Transcription Factors Differentially Expressed Under Drought Conditions in Sugarcane (Saccharum spp)

Silvana Creste Souza1, Rafael Favero Peixoto Junior2, Paula M Nobile3, Larissa Mara Andrade4, Michael dos Santos Brito5 and Maria Helena de Souza Goldman4, (1)Centro de Cana - Instituto Agronômico, Ribeirao Preto, Brazil, (2)Faculdade de Medicina de Ribeirão Preto, FMRP/USP, Ribeirão Preto,, Brazil, (3)Centro de Cana, Instituto Agronômico, Campinas, Brazil, (4)Faculdade de Medicina de Ribeirão Preto, FMRP/USP, Ribeirão Preto, Brazil, (5)Plant Biology Dept - IB-UNICAMP , Ribeirao Preto, Brazil

P0181: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Identifying Venom Gland Components of the Ectoparasitoid Wasp, Anisopteromalus calandrae

Lindsey Perkin, Ken Friesen, Paul Flinn and Brenda Oppert, USDA ARS Center for Grain & Animal Health Research, Manhattan, KS P0182: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Genome-Wide Landscape of Alternative Polyadenylation: Impact on Developmental Gene Expression Regulation in Rice

Q Quinn Li1, Haihui Fu2, Wenyue Su2, Dewei Yang3, Xinfu Ye3, Xiaohui Wu2 and Guoli Ji2, (1)Miami University, Oxford, OH, (2)Xiamen University, Xiamen, China, (3)Fujian Agricultural Science Academy, Fuzhou, China P0183: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd The Brown midrib2 and Brown midrib4 mutants of Maize Link Lignin Biosynthesis to Methylation and Polyglutamylation

Sarah Ellen Hill-Skinner1, Li Li1, Ho Man Tang2, Sanzhen Liu1, Danielle Beuchle2, Wei Wu1, Cheng-Ting Yeh1, Dan Nettleton3 and Patrick S Schnable1, (1)Department of Agronomy, Iowa State University, Ames, IA, (2)Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, (3)Iowa State University, Ames, IA

P0184: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Differential Gene Expression Between Roots of Drought-Tolerant and -Sensitive Sugar Cane Cultivars

Juliana da Silva Vantini1, Gisele Cristina Dedemo2, Daniele Fernanda Revoredo Gimenez1, Renata Izabel Dozzi Tezza3, Miguel Angelo Mutton4, Jesus Aparecido Ferro5 and Maria Ines T Ferro5, (1)UNESP/FCAV - Depto deTecnologia, Jaboticabal, Brazil, (2)UNESP/FCAV - Depto deTecnologia,, Jaboticabal, Brazil, (3)FCAV/UNESP - CREBIO, Jaboticabal, Brazil, (4)UNESP/FCAV - Depto de Produção Vegetal/Fitotecnia, Jaboticabal, Brazil, (5)UNESP/FCAV - Depto de Tecnologia, Jaboticabal, Brazil P0185: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Identification and Characterization of Wheat Genes Contributing in Plant Resistance to Fusarium graminearum and the Mycotoxin Deoxynivalenol

Alexandre Perochon, University College Dublin, Dublin, Ireland P0186: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Suppression of Rye Omega Secalins and Related Wheat Proteins in a Wheat Variety Carrying a 1BL1RS Translocation

Ann E Blechl1, William Vensel1, Susan B Altenbach1, Charlene Tanaka1, Brian S Beecher2 and Lydia Li3, (1)USDA-ARS, Albany, CA, (2)USDA-GIPSA, Kansas City, MO, (3)Johns Hopkins University, Baltimore, MD

218

P0187: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Wheat COP9 Subunit 5 Gene Is Negatively Involved in Host Resistance to Leaf Rust

Hongtao Zhang, Montana State University, Bozeman, MT P0188: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Genome-Wide Identification, Characterization and Expression Profiles of Calcium-Dependent Protein Kinase Genes in Barley (Hordeum vulgare L)

Olga Fedorowicz-Stronska1, Grzegorz Koczyk1, Malgorzata Kaczmarek1, Pawel Krajewski1 and Jan Sadowski2, (1)Institute of Plant Genetics PAS, Poznan, Poland, (2)Adam Mickiewicz University, Poznan, Poland P0189: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Wheat Gene Expression Differences Induced By Six Puccinia triticina Races

Kerri Neugebauer1, Myron Bruce2, Harold N Trick1 and John Fellers3, (1)Kansas State University, Manhattan, KS, (2)USDA-ARS-HWWGRU, Manhattan, KS, (3)USDA ARS, Manhattan, KS P0190: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even A Whole-Genome Transcriptional Analysis of Barley in Response to Infection By Cochliobolus sativus

Matthew William Haas, University of Minnesota, Saint Paul, MN and Brian J Steffenson, University of Minnesota, St Paul, MN

P0191: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Proteomic Analysis of Barley Cell Nuclei at Different Phases of Cell Cycle

Beata Petrovska1, Hana Jerabkova1, Ivo Chamrad2, Jan Vrana1, Jan Safar1, Rene Lenobel2, Jana Urinovska2, Marek Sebela2 and Jaroslav Dolezel1, (1)Institute of Experimental Botany, Olomouc, Czech Republic, (2)Palacky University, Olomouc, Czech Republic P0192: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Expression of Distinct Blumeria graminis Effectors in Response to Isogenic Barley Mutant Genotypes

Antony V E Chapman1, Priyanka Surana1, Weihui Xu1, Yan Meng2, Greg Fuerst3, Dan Nettleton1 and Roger Wise3, (1)Iowa State University, Ames, IA, (2)Alcorn State University, Lorman, MS, (3)USDA-ARS, Iowa State University, Ames, IA P0193: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Transcriptome Response in Different Tissues of Lolium arundinaceum to the Fungal Endophyte Epichloe coenophiala

Randy Dinkins1, Padmaja Nagabhyru2, Michelle A Graham3, Deborah Boykin4 and Christopher Schardl2, (1)USDA-ARS, Forage-Animal Production Research Unit, Lexington, KY, (2)University of Kentucky, Lexington, KY, (3)USDA-ARS-CICGRU, Ames, IA, (4)USDA-ARS, Stoneville, MS

P0194: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Expression Profiling of miRNAs and Their Target Genes Under Salt Stress in the Halophyte Smooth Cordgrass (Spartina alterniflora Loisel)

Hana Zandkarimi1, Venkata R Mangu2, Renesh Bedre2 and Niranjan Baisakh2, (1)Louisiana State university Agricultural Center, Baton Rouge, LA, (2)Louisiana State University Agricultural Center, Baton Rouge, LA P0195: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Gene Expression Changes in Interspecific Festuca x Lolium Hybrids (xFestulolium)

Stepan Stoc es1, Tom Ruttink2, David Kopecky1, Michael Abrouk1, Jan Barto#1 and Jaroslav Dolezel1, (1)Institute of Experimental Botany, Olomouc, Czech Republic, (2)ILVO-Plant Sciences Unit-Growth and Development, Melle, Belgium P0196: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even AP Endonucleases Process 5-Methylcytosine Excision Intermediates During Active DNA Demethylation in Arabidopsis

Jiyoon Lee1, Hosung Jang2, Hosub Shin2, Woo Lee Choi2, Young Geun Mok2 and Jin Hoe Huh3, (1)Samsung Bioepis, Incheon, South Korea, (2)Department of plant science, SNU, Seoul, South Korea, (3)Seoul National University, Seoul, South Korea

P0197: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Genome Wide Alternative Polyadenylation and Gene Expression Studies in Forage Crops - Tall Fescue and Red Clover

Manohar Chakrabarti1, Randy Dinkins2 and Arthur Hunt1, (1)Department of Plant and Soil Sciences, University of Kentucky, Lexington, KY, (2)USDA-ARS, Forage-Animal Production Research Unit, Lexington, KY P0198: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Transcriptomic Changes Due to Water Deficit Define a General Soybean Response and Lineage-Specific Pathways of Drought Avoidance

Justin N Vaughn, University of Georgia, Athens, GA P0199: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Isolation and Identification of the Proteins Contributing to English Ivy Nanoparticle Formation

Jason N Burris1, Scott C Lenaghan2, Yanhui Peng1 and C Neal Stewart Jr1, (1)Department of Plant Sciences, University of Tennessee, Knoxville, TN, (2)Center for Renewable Carbon, University of Tennessee, Knoxville, TN P0200: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Different Molecular Mechanisms of Plant Thermotolerance at High and Extremely High Temperatures

Yuke He, Shanghai Institute of Plant Physiology & Ecology, Chinese Academy of Sciences, Shanghai, China

219

P0201: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Proteomic Analysis of Germinating Soybean Hypocotyl Using Quadrupole Orbitrap Mass Spectrometer

Yue-ie C Hsing, Institute Plant and Microbial Biology, Academia Sinica,, Taipei, Taiwan and Ming-der Shih, Institute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan P0202: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Comparative Transcriptome Analysis Between Cytoplasmic Male Sterile Line NJCMS1A and Its Maintainer NJCMS1B in Soybean (Glycine max (L) Merr)

Shouping Yang, Soybean Research Institute - Nanjing Agricultural University, Nanjing, China P0203: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Gene Expression and Functional Analysis of Soybean Genes with Diurnal Oscillation during Drought Stress

Juliana Marcolino Gomes1, Thiago J Nakayama2, Rafaela Ribeiro Reis1, Fabiana Aparecida Rodrigues3, Liliane M Mertz Henning3, Renata Fuganti-Pagliarini3, Hugo B Correa Molinari4, Frank Harmon5 and Alexandre Nepomuceno3, (1)State University of Londrina/ Embrapa Soybean, Londrina, Brazil, (2)Federal University of Viçosa/ Embrapa Soybean, Londrina, Brazil, (3)Embrapa Soybean, Londrina, Brazil, (4)Embrapa Agroenergy, Brasília, Brazil, (5)ARS/USDA Plant Gene Expression Center, Albany, CA

P0204: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Differential Expression of Candidate Genes Involved in Root-Knot Nematode Resistance in Cowpea [Vigna unguiculata (L) Walp]

Jansen Rodrigo Pereira Santos1, Arsenio Daniel Ndeve2, Bao Lam Huynh2, William Charles Matthews2, Steve Wanamaker3, Mitchell R Lucas3, Maria Muñoz-Amatriain3, Timothy J Close3 and Philip A Roberts3, (1)University of California-Riverside (UC Riverside), Riverside, CA, (2)University of California - Riverside, Riverside, CA, (3)University of California, Riverside, CA P0205: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd High-Throughput RNA-Seq Data for Amino Acid Pathways in Developing Soybean Seeds

Sarah I Jones and Lila Vodkin, University of Illinois, Urbana, IL P0206: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Comprehensive Heat Transcriptome Analyses Towards Identification of Heat Stress Responsive Genes in Chickpea (Cicer arietinum L)

Himabindu Kudapa, Gaurav Agarwal, Vinay Kumar, Anu Chitikineni, Pooran M Gaur, L Krishnamurthy and Rajeev K Varshney, ICRISAT, Hyderabad, India

P0207: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Transcription Factors and Glyoxylate Cycle Genes Prominent in the Transition of Soybean Cotyledons to the First Functional Leaves of the Seedling

Md Shamimuzzaman and Lila Vodkin, University of Illinois, Urbana, IL P0208: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Comprehensive Genomic and Molecular Breeding Efforts to Understand Genetic Control of Aflatoxin Contamination in Peanut

Spurthi N Nayak1, Gaurav Agarwal1, Harikishan Sudini1, Manish K Pandey1, Hari D Upadhyaya1, Ashwin S Jayale1, Vinay Kumar1, Falalou Hamidou2, Abhishek Rathore1, Pasupuleti Janila1, Haile Desmae3, Hongjie Li4, Xuanqiang Liang5, Boshou Liao6, Baozhu Guo7, Peggy Ozias-Akins8 and Rajeev K Varshney1, (1)ICRISAT, Hyderabad, India, (2)ICRISAT, Niamey, Niger, (3)ICRISAT, Bamako, Mali, (4)ShanDong Shofine Seed Technology Co Ltd, Jining, China, (5)Crop Research Institute, Guangzhou, China, (6)Oil Crops Research Institute, Wuhan, China, (7)USDA-ARS, Crop Protection and Management Research Unit, Tifton, GA, (8)University of Georgia, Tifton, GA P0209: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Protein-Protein Interactions of Transcription Factors from the Drought QTL-Hotspot Linked to Stress Tolerance in Chickpea

Himabindu Kudapa, Abirami Ramalingam, Spurthi Nayak, Lekha T Pazhamala, Deepa Jaganathan, Sandeep Kale, L Krishnamurthy, Pooran M Gaur and Rajeev K Varshney, ICRISAT, Hyderabad, India

P0210: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Functional Analysis of the Coffee (Coffea arabica) 14-3-3 Gene Promoter

Fabiola Ocampo, IB - UNESP - Department of Genetics, Botucatu, Brazil and Ivan G Maia, IB - UNESP - Department of Genetics, Botucatu, SP, Brazil P0211: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Genome-Wide Survey and Characterization of AP2/Erf and HSP90 Gene Family in Five Legume Species

Gaurav Agarwal, Himabindu Kudapa, Vanika Garg, Lekha T Pazhamala, Dadakhalandar Doddamani, Aamir W Khan and Rajeev K Varshney, ICRISAT, Hyderabad, India P0212: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Overexpression of Switchgrass Histone H3 tagged with YFP Fusion Genes Trigger Programmed Cell Death in Nicotiana benthamiana

Jiamin Miao1, Taylor P Frazier1, Bingyu Zhao1, Xinquan Zhang2 and Linkai Huang2, (1)Virginia Tech, Blacksburg, VA, (2)Sichuan Agricultural University, Ya'an, China

220

P0213: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Transcriptome Analysis in Leaves, Flowers and Initial Fruit Development of Coffea arabica L

Suzana Tiemi Ivamoto1, Osvaldo Reis Júnior2, Leonardo Murai Sakuray3, Priscila Mary Yuyama4, Marcelo Falsarella Carazzolle5, Gonçalo Amarante Guimarães Pereira5, Douglas S Domingues1 and Luiz F P Pereira6, (1)Instituto Agronômico do Paraná, Londrina, Brazil, (2)Universidade Estadual de Campinas, Campinas, Brazil, (3)UEL, Londrina, Brazil, (4)UFRGS, Porto Alegre, Brazil, (5)Genomics and Expression Laboratory - State University of Campinas - UNICAMP, Campinas, Brazil, (6)Embrapa Café, Londrina, Brazil P0214: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Coupling Gene to Function in Strawberry

Kevin M Folta, University of Florida, Gainesville, FL, Jeremy Pillet, UNIVERSITY OF FLORIDA, GAINESVILLE, FL and Alan Chambers, Florida University, Gainesville, FL P0215: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Inheritance, Gene Expression, and Valencene Quantification in a Mandarin Hybrid Deficient in Valencene Synthase CsTps1

Qibin Yu1, Ming Huang2, Yuan Yu3, Cuiming Tang4, Yanbo Wang1, Jinhe Bai5, Anne Plotto5, Elizabeth A Baldwin5 and Fred G Gmitter6, (1)University of Florida, Lake Alfred, FL, (2)Citrus Research & Education Center, University of Florida, Lake Alfred, FL, (3)Horticultural Sciences, University of Florida, Lake Alfred, FL, (4)Guangdong Academy of Agricultural Sciences, Guangzhou, China, (5)USDA-ARS, U S Horticultural Research Laboratory, Fort Pierce, FL, (6)University of Florida, IFAS-CREC, Lake Alfred, FL

P0216: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Regulatory Landscape of Small Intergenic Regions in a Compact Plant Genome

Sergio Alan Cervantes-Pérez, Laboratorio Nacional de Genómica para la Biodiversidad México, Irapuato, Guanajuato, Mexico, Araceli Oropeza-Aburto, Laboratorio Nacional de Genómica para la Biodiversidad, Irapuato, Guanajuato, Mexico, Enrique Ibarra-Laclette, Red de estudios moleculares avanzados, Instituto de Ecología AC-INECOL, Xalapa, Veracruz, Mexico and Luis Herrrera-Estrella, Laboratorio Nacional de Genomica para la Biodiversidad, Irapuato, Guanajuato, Mexico P0217: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd The Strigolactone Pathway Genes in Populus

Jay Chen, Xiaoping Wang, Olaf Czarnecki, Kai Feng, Wellington Muchero and Gerald A Tuskan, Oak Ridge National Laboratory, Oak Ridge, TN P0218: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Engineering CAM Photosynthetic Machinery into C3 Arabidopsis -Mesembryanthemum crystallinum

Sung Don Lim1, Won Cheol Yim2, Rebecca L Albion2 and John C Cushman2, (1)University of Nevada, Reno, Reno, NV, (2)Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Reno, NV

P0219: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Exploration of Drought Responding Genes in Camelina sativa

Geung-Joo Lee1, Sung Jin Chung1 and Bashistha Kanth2, (1)Chungnam National University, Daejeon, South Korea, (2)Chungnam National Univeristy, Daejeon, South Korea P0220: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even The Heat Shock Protein 70 Gene Family from Pyropia seriata and Increase of the Heat Tolerance By Overexpression of the PsHSP70d in Chlamydomonas

San Choi1, Sunhee Kim1, Won-Joong Jeong2, Mi Sook Hwang3 and Dong-Woog Choi1, (1)Chonnam National University, Gwangju, South Korea, (2)KRIBB, Daejeon, South Korea, (3)Aquatic Plant Variety Center, NFRDI, Mokpo, South Korea P0221: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd The Transcriptome Sequence Analysis of Artemisia frigida

Yue Liu1, Xiaoxiao Feng1, Yi Wang2, Naxin Huo3, Xu Ma1 and Chuanchuan Chen1, (1)Minzu University of China, Beijing, China, (2)USDA ARS, Western Regional Research Center, Albany, CA, (3)Department of Plant Sciences, University of California, Davis, CA

P0222: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Root Transcriptome of the Pachycereus pringlei, a Sonoran Desert Cactus with Determinate Growth of the Primary Root

Gustavo Rodriguez-Alonso1, Marta Matvienko2, Mayra Lopez-Valle1, Joseph G Dubrovsky1 and Svetlana Shishkova1, (1)Instituto de Biotecnología, UNAM, Cuernavaca, Mexico, (2)CLC bio, Davis, CA P0223: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd The Gene for Chloroplast Ribosomal Protein S16 is Located in Both Chloroplast and Nuclear Genomes: Expression of its Chloroplast Gene

Masahiro Sugiura, Nagoya University, Center for Gene Research, Nagoya, Japan P0224: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Microarrays - Even Functional Genomics Resources at EBI: ArrayExpress and Expression Atlas

Maria Keays, European Bioinformatics Institute (EMBL-EBI), Hinxton, United Kingdom

221

P0225: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Microarrays - Odd Whole Blood Microarray Analysis of Pigs Showing Extreme Phenotypes After a Porcine Reproductive and Respiratory Syndrome Virus (PRRSv) Infection

Martine Schroyen1, Juan P Steibel2, Igseo Choi3, James E Koltes1, Chris Eisley4, Eric Fritz-Waters1, James M Reecy1, Jack CM Dekkers5, Raymond R R Rowland6, Joan K Lunney3, Cathy Ernst2 and Christopher K Tuggle1, (1)Department of Animal Science, Iowa State University, Ames, IA, (2)Department of Animal Science, Michigan State University, East Lansing, MI, (3)APDL, BARC, ARS, USDA, Beltsville, MD, (4)Department of Statistics, Iowa State University, Ames, IA, (5)Iowa State University, Ames, IA, (6)Department of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS P0226: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Microarrays - Even A Microarray for Measuring Medicago Expression

Stan Trask, Affymetrix, Santa Clara, CA P0227: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Microarrays - Odd After Ripening and Abscisic Acid Mediated Changes in the Expression of Brassinosteroid and Ethylene Genes in Wheat Seeds

Vijaya R Chitnis1, Feng Gao1, Zhen Yao1, Mark Jordan2 and Belay T Ayele1, (1)Department of Plant Science, University of Manitoba, Winnipeg, MB, Canada, (2)Cereal Research Center, Agriculture and Agri-Food Canada, Morden, MB, Canada

P0228: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Microarrays - Even Large-Scale Housekeeping Genes Mining from Public Database: A Case in Gramineae Crop

Zhongxu Chen, Triticeae Research Institute,Sichuan Agriculture University, chengdu, China and Jirui Wang, Sichuan Agricultural University, CHENGDU, China P0229: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Microarrays - Odd QTL Mapping Combined with Microarray Profiling Data for the Identification of Pine Wood Nematode (PWN) Resistance Genes in Pinus thunbergii

Tomonori Hirao, Forestry and Forest Products Research Institute, Hitachi, Ibaraki, Japan, Koji Matsunaga, Kyushu Breeding Office for FTBC, Goshi, Japan, Kentaro Mishima, Forest Tree Breeding Center, Forestry and Forest Products Research Institute, Hitachi, Japan and Atsushi Watanabe, Faculty of Agriculture, Kyushu University, Fukuoka, Japan P0230: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Microarrays - Even Exploring Tomato Genes with a Microarray (Solanum lycopersicum)

Stan Trask, Affymetrix, Santa Clara, CA

P0231: Genome Mapping, Tagging & Characterization: Aquaculture - Odd de novo Genome Assembly of the South American Freshwater Fish Tambaqui (Colossoma macropomum)

Francisco P Lobo1, Leandro C Cintra1, Eduardo Sousa Varela2, Anderson Luis Alves2, Luciana Cristine Vasques Villela3, Naiara Milagres Augusto da Silva4, Samuel Rezende Paiva5 and Alexandre R Caetano4, (1)Embrapa Informática Agropecuária, Campinas, SP, Brazil, (2)Embrapa Pesca e Aquicultura, Palmas, TO, Brazil, (3)Programa de Pós-Graduação em Ciências Animais, Universidade de Brasília, Brasilia, DF, Brazil, (4)Embrapa Recursos Genéticos e Biotecnologia, Brasilia, DF, Brazil, (5)Embrapa Labex US – Secretariat of International Affairs, Fort Collins, CO P0232: Genome Mapping, Tagging & Characterization: Aquaculture - Even The de novo Draft Genome Assembly of Yellowtail, Seriola lalandi

Andrew J Severin1, John Hyde2, Catherine Purcell2 and Arun Seetharam1, (1)Iowa State University, Ames, IA, (2)Southwest Fisheries Science Center, National Marine Fisheries Service, La Jolla, CA P0233: Genome Mapping, Tagging & Characterization: Aquaculture - Odd Can Epigenetic Regulation of Sex-Ratios Explain Natural Variation in Self-Fertilization Rates? - Kryptolebias marmoratus

Amy Ellison1, Carlos M Rodriguez Lopez2, Paloma Moran3, Martin Swain4, Manuel Megias3, Matthew Hegarty5, James M Breen2, Michael J Wilkinson2 and Sofia Consuegra6, (1)Cornell University, Ithaca, NY, (2)University of Adelaide, Adelaide, Australia, (3)Universidad de Vigo, Vigo, Spain, (4)Aberystwyth University, Aberystwyth, United Kingdom, (5)IBERS, Aberystwyth University, Aberystwyth, United Kingdom, (6)Swansea University, Swansea, United Kingdom

P0234: Genome Mapping, Tagging & Characterization: Aquaculture - Even Distinct Tissue-Specific Gene Expression Reveals Different Creatine-Synthesizing Pathways Between Mammals and Fish

Andreas Borchel1, Marieke Verleih1, Alexander Rebl1, Bernd Köllner2, Carsten Kühn3 and Tom Goldammer1, (1)Leibniz Institute for Farm Animal Biology (FBN), Dummerstorf, Germany, (2)Friedrich Loeffler Institute (FLI), Greifswald-Insel Riems, Germany, (3)State Res Centre Agriculture & Fishery (LFA-MV), Rostock, Germany P0235: Genome Mapping, Tagging & Characterization: Aquaculture - Odd Characterization of Maskin Isoforms in Atlantic Salmon, a Candidate Gene Associated to Sexual Maturation

Alejandro P Gutierrez and William S Davidson, Simon Fraser University, Burnaby, BC, Canada P0236: Genome Mapping, Tagging & Characterization: Aquaculture - Even Stepping Toward Sustainable Aquaculture: Genomic Resource Development to Help Guide Broodstock Selection and Culture Practices for the California Yellowtail, Seriola lalandi

Catherine Purcell1, Andrew J Severin2, Vincent Buonaccorsi3 and John Hyde1, (1)Southwest Fisheries Science Center, National Marine Fisheries Service, La Jolla, CA, (2)Iowa State University, Ames, IA, (3)Juniata College, Huntingdon, PA

222

P0237: Genome Mapping, Tagging & Characterization: Aquaculture - Odd Tissue and Disease Specific Expression of miRNA Genes in Atlantic Salmon (Salmo salar)

Rune Andreassen, Oslo and Akershus University College of Applied Sciences, Oslo, Norway, Merete M Worren, Bioinformatics Core Facility, Institute for Medical Informatics, Oslo University Hospital,, Oslo, Norway and Bjørn Høyheim, Department of Basic Sciences and Aquatic Medicine, Faculty of Veterinary Medicine and Biosciences, Norwegian University of Life Sciences, Oslo, Norway P0238: Genome Mapping, Tagging & Characterization: Aquaculture - Even Yeast Two-Hybridization Analyses of Atlantic Salmon sdY Interactions

Agnieszka Stadnik, Simon Fraser University, Burnaby, BC, Canada P0239: Genome Mapping, Tagging & Characterization: Aquaculture - Odd A Genome Sequence Assembly for Channel Catfish, Ictalurus punctatus

Geoff Waldbieser, USDA - Agricultural Research Service, Stoneville, MS and John Liu, Auburn University, Auburn, AL P0240: Genome Mapping, Tagging & Characterization: Aquaculture - Even Allele-Specific Expression in Interspecific Catfish Hybrids

Ailu Chen, Ruijia Wang, Luyang Sun, Lisui Bao, Chao Li, Chen Jiang, Shikai Liu and John Liu, Auburn University, Auburn, AL

P0241: Genome Mapping, Tagging & Characterization: Aquaculture - Odd RNA-Seq Analysis Unraveled Genes and Pathways Involved in Testicular Differentiation in Channel Catfish

Qifan Zeng, Auburn University, Auburn, AL P0242: Genome Mapping, Tagging & Characterization: Aquaculture - Even Characterization of Complement Regulatory Genes in Channel Catfish and Their Involvement in Disease Defense Response

Chen Jiang, Jiaren Zhang, Jun Yao, Shikai Liu, Yun Li, Lin Song, Chao Li and John Liu, Auburn University, Auburn, AL P0243: Genome Mapping, Tagging & Characterization: Aquaculture - Odd GWAS Analyses in Catfish Reveal the Presence of Functional Hubs of Related Genes Within Major QTLs for Columnaris Disease Resistance

Xin Geng, Auburn University, Auburn, AL P0244: Genome Mapping, Tagging & Characterization: Aquaculture - Even The Development and Characterization of a 57K SNP Array for Rainbow Trout

Yniv Palti1, Guangtu Gao1, Thomas Moen2, Sixin Liu3, Sigbjørn Lien4, Matthew P Kent4, Caird E Rexroad, III1 and Michael Miller5, (1)USDA-ARS-NCCCWA, Kearneysville, WV, (2)Aquagen, Trondheim, Norway, (3)USDA-ARS-NCCCWA, Kearnysville, WV, (4)CIGENE, Norwegian University of Life Sciences, Aas, Norway, (5)UC Davis, Davis, CA

P0245: Genome Mapping, Tagging & Characterization: Aquaculture - Odd Transcriptomic Signatures in Common Carp Skin during Scale Regeneration

Jun Yao, Jiaren Zhang, Shikai Liu, Qifan Zeng, Luyang Sun, Baofeng Su, Chen Jiang, Yun Li, Rex Dunham and John Liu, Auburn University, Auburn, AL P0246: Genome Mapping, Tagging & Characterization: Aquaculture - Even Comprehensive Characterization of 9,674 Rainbow Trout (Oncorhynchus mykiss) Large Intergenic Noncoding RNAs Using Next Generation Sequencing

Jian Wang and Jianbo Yao, West Virginia University, Morgantown, WV P0247: Genome Mapping, Tagging & Characterization: Aquaculture - Odd Development of a Fluidigm SNP Panel for Genetic Analysis in Rainbow Trout

Sixin Liu, Caird E Rexroad, III, Guangtu Gao and Yniv Palti, USDA-ARS-NCCCWA, Kearneysville, WV P0248: Genome Mapping, Tagging & Characterization: Aquaculture - Even Genome-Wide Discovery of Long Non-Coding RNAs in Rainbow Trout and Their Potential Roles in Muscle Growth and Quality

Rafet Al-Tobasei1, Bam D Paneru1, Gary Thorgaard2, Jianbo Yao3, Timothy D Leeds4, Brett Kenney3 and Mohamed Salem1, (1)Middle Tennessee State University, Murfreesboro, TN, (2)Washington State University, Pullman, WA, (3)West Virginia University, Morgantown, WV, (4)USDA-ARS-NCCCWA, Kearneysville, WV

P0249: Genome Mapping, Tagging & Characterization: Aquaculture - Odd Microsatellite and Sequence Data Reveal Population Structure in California Redband Trout, Oncorhynchus mykiss subspp

Rachel E Simmons, National University, La Jolla, CA and Bernie P May, University of California, Davis, Davis, CA P0250: Genome Mapping, Tagging & Characterization: Aquaculture - Even Differential Expression of miRNAs in Skeletal Muscle of Rainbow Trout Under the Influence of Estrogen

Prasanthi P Koganti1, Jian Wang1, Hao Ma1, Beth Cleveland2, Gregory M Weber2 and Jianbo Yao1, (1)West Virginia University, Morgantown, WV, (2)USDA-ARS-NCCCWA, Kearneysville, WV P0251: Genome Mapping, Tagging & Characterization: Aquaculture - Odd Identification of Mitochondrial microRNAs Related to Egg Deterioration Caused By Post-Ovulatory Aging in Rainbow Trout

Hao Ma and Jianbo Yao, West Virginia University, Morgantown, WV P0252: Genome Mapping, Tagging & Characterization: Aquaculture - Even Accuracy of Genomic Prediction for BCWD Resistance in Rainbow Trout Using Different Genotyping Platforms and Genomic Selection Models

Roger L Vallejo, Timothy D Leeds, Sixin Liu, Guangtu Gao, Timothy J Welch, Gregory D Wiens and Yniv Palti, USDA-ARS-NCCCWA, Kearneysville, WV

223

P0253: Genome Mapping, Tagging & Characterization: Aquaculture - Odd RNA-Seq Identifies SNPs Associated with Muscle Yield and Other Qualities in Rainbow Trout

Bam D Paneru, Middle Tennessee State University, Murfreesboro, TN P0254: Genome Mapping, Tagging & Characterization: Aquaculture - Even Rainbow Trout (Oncorhynchus mykiss) Resistance to Columnaris Disease Is Heritable and Favorably Correlated with Bacterial Cold Water Disease Resistance

Jason P Evenhuis1, Timothy D Leeds1, David P Marancik1, Scott LaPatra2 and Gregory D Wiens1, (1)USDA-ARS-NCCCWA, Kearneysville, WV, (2)Clear Springs Foods, Buhl, ID P0255: Genome Mapping, Tagging & Characterization: Aquaculture - Odd Social Hierarchy and Differential Expression of drd2, mao and nnos in Juvenile Rainbow Trout (Oncorhynchus mykiss)

Soniya Balli, University of Massachusetts Dartmouth, Dartmouth, MA and Robert Drew, University of Massachusetts-Dartmouth, Dartmouth, MA P0256: Genome Mapping, Tagging & Characterization: Aquaculture - Even Population Genomics of West Coast and Alaskan Sablefish (Anoplopoma fimbria)

Andrew Jasonowicz1, Krista M Nichols2, Giles Goetz1 and Frederick Goetz3, (1)University of Washington, Seattle, WA, (2)NOAA Fisheries, Seattle, WA, (3)NOAA Fisheries, Port Orchard, WA

P0257: Genome Mapping, Tagging & Characterization: Aquaculture - Odd Sex Markers in Two Sebastes Rockfishes

Ben Fowler and Vincent Buonaccorsi, Juniata College, Huntingdon, PA P0258: Genome Mapping, Tagging & Characterization: Aquaculture - Even Evaluation of Seven Microsatellite DNA Markers for Their Genetic Variation and Application to Paternity Determination in Pacific White Shrimp, Penaeus vannamei

Yvonne Lee1, Dustin Moss2, Shaun Moss2 and Jinzeng Yang3, (1)University of Hawaii, Manoa, HI, (2)Oceanic Institute of Hawaii Pacific University, HI, (3)University of Hawaii at Manoa, Honolulu, HI P0259: Genome Mapping, Tagging & Characterization: Aquaculture - Odd Pedigree Traceability in Shrimp with Microsatellites Developed By NGS

Ricardo Perez-Enriquez, Centro de Investigaciones Biologicas del Noroeste, SC, La Paz, BCS, Mexico, Jesus A Medina-Espinoza, Centro de Investigaciones Biológicas del Noroeste, SC, La Paz, BCS, Mexico, Victor Suarez-Lopez, Universidad Autónoma de Baja California Sur, LA PAZ, Mexico, Adriana Max-Aguilar, CIBNOR, LA PAZ, Mexico, Pedro Cruz-Hernandez, Centro de Investigaciones Biologicas del Noroeste, LA PAZ, Mexico and Cesar J Saucedo-Barron, Instituto Sinaloense de Acuacultura y Pesca, Culiacan, Mexico

P0260: Genome Mapping, Tagging & Characterization: Aquaculture - Even Contrasting Patterns of Neutral and Adaptive Genetic Variation of Chilean Blue Mussel (Mytilus chilensis) Due to Local Adaptation and Aquaculture

Cristian Araneda, Universidad de Chile, Depto de Produccion Animal, Santiago, Chile, M Angelica Larrain, Universidad de Chile, Departamento de Ciencia de los Alimentos y Tecnología Química, Santiago, Chile, Benjamin Hecht, University of Idaho, Hagerman, ID and Shawn Narum, Columbia River Inter-Tribal Fish Commission, Hagerman, ID P0261: Genome Mapping, Tagging & Characterization: Aquaculture - Odd Identification of White Spot Syndrome Virus Homologues in the Genome of Kuruma Shrimp

Yuanyuan Wang, Tokyo University of Marine Science and Technology, Tokyo, Japan P0262: Genome Mapping, Tagging & Characterization: Aquaculture - Even New Insights into the Differences Between Triploid and Diploid Fujian Oyster By Integrated Gene Expression Profiling and Proteomic Analyses

Weiwei You, Xiamen University, Xiamen, China P0263: Genome Mapping, Tagging & Characterization: Cattle - Odd DNASTAR's Lasergene Genomics Suite for RNA-Seq Alignment and Analysis of Three Bos taurus Breeds

Matthew Keyser, DNASTAR, Inc, Madison, WI and Jackie Carville, DNAStar, Inc, Madison, WI

P0264: Genome Mapping, Tagging & Characterization: Cattle - Even Genome Wide Association Study of E coli O157:H7 Vaccine Response in Beef Cattle

Kara B Marley1, Larry A Kuehn2, John W Keele3, Ben Wileman4 and Michael G Gonda1, (1)South Dakota State University, Brookings, SD, (2)USDA-ARS, US Meat Animal Research Center, Clay Center, NE, (3)USDA, ARS, USMARC, Clay Center, NE, (4)Kansas State University, Manhattan, KS P0265: Genome Mapping, Tagging & Characterization: Cattle - Odd Detection of Genome-Wide Copy Number Variation in Bovine Using the Axiom® Genotyping Solution from Affymetrix

Ali Pirani, Ram Varma and Teresa A Webster, Affymetrix Inc, Santa Clara, CA P0266: Genome Mapping, Tagging & Characterization: Cattle - Even selectSNP: An R Package for Selecting SNPs Optimal for Genetic Evaluation

Xiao-Lin Wu1, Adam McQuistan1, Stewart Bauck1 and George R Wiggans2, (1)Neogen/GeneSeek, Lincoln, NE, (2)Animal Genomics and Improvement Laboratory, ARS-USDA, Beltsville, MD P0267: Genome Mapping, Tagging & Characterization: Cattle - Odd Discovering Novel Protein-Coding Genes and Long Non-Coding RNAs in Bos taurus

Darren E Hagen, Deepak R Unni, Colin M Diesh and Christine G Elsik, Division of Animal Sciences, University of Missouri, Columbia, MO

224

P0268: Genome Mapping, Tagging & Characterization: Cattle - Even New Data Mining Interfaces at the Bovine Genome Database

Colin M Diesh, Deepak R Unni, Darren E Hagen, Aditi Tayal and Christine G Elsik, Division of Animal Sciences, University of Missouri, Columbia, MO P0269: Genome Mapping, Tagging & Characterization: Cattle - Odd Beef Cattle Metagenomics: Predicting Growth from the Inside Out

Eric Fritz-Waters1, James M Reecy1, James E Koltes1, Alysta Markey2 and Mary Sue Mayes1, (1)Department of Animal Science, Iowa State University, Ames, IA, (2)The Maschhoffs, Carlyle, IL P0270: Genome Mapping, Tagging & Characterization: Cattle - Even Selection Signatures in the Cattle Genome: Lessons from Largescale Resequencing of Four International Breeds

Bertrand Servin, INRA, UMR1388 GenPhySe, Toulouse, France and Simon Boitard, INRA, Jouy en Josas, France P0271: Genome Mapping, Tagging & Characterization: Cattle - Odd Advances on Bos indicus (Nellore) Genomics: Integrating Genomic Selection and GWAS Information

Jose Fernando Garcia, Sao Paulo State University / UNESP, Sao Paulo, Brazil, Yuri Tani Utsunomiya, Sao Paulo State University / UNESP, Sao Paolo, Brazil, Paolo Ajmone-Marsan, UNICATT, Piacenza, Italy and Tad S Sonstegard, Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD

P0272: Genome Mapping, Tagging & Characterization: Cattle - Even Prediction of Causative Genomic Relationships Using Sequence Data of Five French and Danish Dairy Cattle Breeds

Irene van den Berg, AgroParisTech, Aarhus University and INRA, Tjele, Denmark, Didier A Boichard, INRA UMR1313 Animal Genetics and Integrative Biology, Jouy-en-Josas, France and Mogens S Lund, Aarhus University, Tjele, Denmark P0273: Genome Mapping, Tagging & Characterization: Cattle - Odd Cattle Sex-Specific Recombinations and Their Genetic Control from a Large Pedigree Analysis

Li Ma1, Jeffrey R O'Connell2, Paul M VanRaden3, Botong Shen1, Chuanyu Sun4, Derek Bickhart5, John B Cole3, Daniel J Null3, Yang Da6 and George R Wiggans3, (1)Department of Animal and Avian Sciences, University of Maryland, College Park, MD, (2)University of Maryland Medical School, Baltimore, MD, (3)Animal Genomics and Improvement Laboratory, ARS-USDA, Beltsville, MD, (4)National Association of Animal Breeders, Columbia, MO, (5)Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD, (6)Department of Animal Science, University of Minnesota, Saint Paul, MN

P0274: Genome Mapping, Tagging & Characterization: Cattle - Even Ruminant Genomics

Marta Farré Belmonte1, Zhiyong Huang2, Xiaoming Yao2, Xiaodong Fang2, Jitendra Narayan3, Gancho T Slavov3, Jaebum Kim4, Xiangfeng Li2, Wei Zhao2, Hyung-Soon Yim5, Jong Bhak6, Guojie Zhang2, Jun Wang2, Jian Ma7, Harris A Lewin8 and Denis M Larkin1, (1)Royal Veterinary College, University of London, London, United Kingdom, (2)BGI, Shenzhen, China, (3)Aberystwyth University, Aberystwyth, United Kingdom, (4)Konkuk University, Seoul, South Korea, (5)Korea Institute of Ocean Science and Technology, Gyeonggi-do, South Korea, (6)UNIST, Ulsan, South Korea, (7)University of Illinois at Urbana-Champaign, Urbana, IL, (8)UC Davis, Davis, CA P0275: Genome Mapping, Tagging & Characterization: Cattle - Odd Lethal Haplotype Detection and Characterization in Angus Population

Jesse Hoff1, Jeremy F Taylor1, Jared Decker2 and Robert D Schnabel1, (1)Division of Animal Sciences, University of Missouri, Columbia, MO, (2)Division of Animal Science, University of Missouri, Columbia, MO P0276: Genome Mapping, Tagging & Characterization: Cattle - Even The Holstein Y-Chromosome: Only Two Y-Lineages Survived in North America

Wansheng Liu, Department of Animal Science, Penn State University, University Park, PA, Chad Dechow, The Pennsylvania State University, State College, PA and Xiangpeng Yue, Dept of Animal Science, Penn State University, University Park, PA

P0277: Genome Mapping, Tagging & Characterization: Cattle - Odd Genomic Signatures Reveal New Evidences for Selection of Important Traits in Domestic Cattle

Lingyang Xu1, Derek Bickhart2, John B Cole3, Steven G Schroeder2, Jiuzhou Song1, Curtis P VanTassell2, Tad S Sonstegard2 and George Liu3, (1)University of Maryland, College Park, MD, (2)Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD, (3)Animal Genomics and Improvement Laboratory, ARS-USDA, Beltsville, MD P0278: Genome Mapping, Tagging & Characterization: Cattle - Even Identification of Copy Number Variants in the Nellore and Angus Founders of a Mapping Population

Yue Xing and Clare A Gill, Texas A&M University, College Station, TX P0279: Genome Mapping, Tagging & Characterization: Cattle - Odd A Genetic Investigation of Isle of Jersey Cattle, the Foundation of the Jersey Breed

Heather J Huson1, Tad S Sonstegard2, James Godfrey3, David Hambrook3, Cari Wolfe4, George R Wiggans5, Harvey Blackburn6 and Curtis P Van Tassell7, (1)Cornell University, Ithaca, NY, (2)Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD, (3)Royal Jersey Agricultural and Horticultural Society, Trinity, United Kingdom, (4)American Jersey Cattle Association, Reynoldsburg, OH, (5)Animal Genomics and Improvement Laboratory, ARS-USDA, Beltsville, MD, (6)National Center for Genetic Resources Preservation, USDA, Fort Collins, CO, (7)USDA-ARS-AGIL, Beltsville, MD

225

P0280: Genome Mapping, Tagging & Characterization: Cattle - Even A Survey of Epistasis within Angus Steers

Holly R Ramey1, Jared E Decker1, Robert D Schnabel2 and Jeremy F Taylor1, (1)University of Missouri, Columbia, MO, (2)Division of Animal Sciences, University of Missouri, Columbia, MO P0281: Genome Mapping, Tagging & Characterization: Cattle - Odd Across-Breed Imputation with Whole Genome Sequence Data in Dairy Cattle

Christine F Baes1, Beat Bapst2, Franz R Seefried2, Christine Flury3, Heidi Signer-Hasler3, Dorian J Garrick4, Christian Stricker5 and Birgit Gredler2, (1)Bern University of Applied Sciences, Zug, Switzerland, (2)Qualitas AG, Zug, Switzerland, (3)Bern University of Applied Sciences, Zollikofen, Switzerland, (4)Department of Animal Science, Iowa State University, Ames, IA, (5)agn-genetics, Davos, Switzerland P0282: Genome Mapping, Tagging & Characterization: Cattle - Even Effect of the Reference Population Composition on Genomic Predictions of Small Dairy Populations

Adriana García, CENID-Fisiología INIFAP, Ajuchitlán, Mexico, Felipe de Jesús Ruiz, Centro Nal de Inv en Fis y Mej Animal INIFAP, Mexico, Mexico and Román Ponce Sergio Ivan, CIR Pacífico Sur INIFAP, Oaxaca, Mexico

P0283: Genome Mapping, Tagging & Characterization: Cattle - Odd A Genome Wide Association Study of Milk Fat Globule Size and Casein Micelle Size in Canadian Holsteins

Allison Fleming1, Astrid Koeck1, Mehdi Sargolzaei2, Flavio Schenkel1, Milena Corredig3, R Ayesha Ali4 and Filippo Miglior5, (1)Centre for Genetic Improvement of Livestock, University of Guelph, Guelph, ON, Canada, (2)Alliance Boviteq, Saint-Hyacinthe, QC, Canada, (3)Department of Food Science, University of Guelph & Gay Lea Foods, Guelph, ON, Canada, (4)Dept of Mathematics and Statistics, University of Guelph, Guelph, ON, Canada, (5)Canadian Dairy Network & University of Guelph, Guelph, ON, Canada P0284: Genome Mapping, Tagging & Characterization: Cattle - Even Mapping of Female Fertility Traits in Nordic Red Dairy Cattle Using 50K and High Density Genotypes

Nina F Schulman, Terhi Iso-Touru, Miika Tapio and Johanna Vilkki, MTT Agrifood Research Finland, Jokioinen, Finland P0285: Genome Mapping, Tagging & Characterization: Cattle - Odd Copy Number Variation in Brown Swiss Dairy Cattle

Marlies A Dolezal1, Alessandro Bagnato2, Fausta Schiavini3, Enrico Santus4, Lars-Erik Holm5, Christian Bendixen5 and Frank Panitz5, (1)Vetmeduni Vienna, Vienna, Austria, (2)Dept VESPA, Università degli Studi di Milano, Milan, Italy, (3)Università degli Studi di Milano, Milano, Italy, (4)ANARB - Associazione Nazionale Allevatori di Razza Bruna, Bussolengo, Italy, (5)Aarhus University, Dept Molecular Biology and Genetics, Tjele, Denmark

P0286: Genome Mapping, Tagging & Characterization: Cattle - Even Industry Applications of Genomic Predictions for Dairy Cattle in The Netherlands

Marianne Stoop1, Gerben De Jong2, Erik Mullaart2 and Sophie Eaglen1, (1)CRV Holding, Arnhem, Netherlands, (2)CRV Holding bv, Arnhem, Netherlands P0287: Genome Mapping, Tagging & Characterization: Cattle - Odd Copy Number Variants (CNV) Mapping and Association Analysis in the Autochthonous Italian Valdostana Red Pied Cattle Population

Maria G Strillacci1, Raphaelle TMM Prinsen2, Erika Frigo2, Fausta Schiavini1, Maria C Cozzi2, Antonia B Samore2, Mario Vevey3, Luca Fontanesi4, Marlies A Dolezal5 and Alessandro Bagnato6, (1)Università degli Studi di Milano, Milano, Italy, (2)Università degli Studi di Milano - Dept VESPA, Milano, Italy, (3)Associazione Nazionale Allevatori Razza Valdostana, Gressan, Italy, (4)Department of Agricultural and Food Sciences, University of Bologna, Bologna, Italy, (5)Vetmeduni Vienna, Vienna, Austria, (6)Università degli Studi di Milano, Milano, Italy P0288: Genome Mapping, Tagging & Characterization: Cattle - Even Genome Wide Association Study Between CNVs and Production Traits in the Italian Brown Swiss Breed

Maria G Strillacci1, Erika Frigo2, Raphaelle TMM Prinsen2, Fausta Schiavini1, Maria C Cozzi2, Attilio Rossoni3 and Alessandro Bagnato4, (1)Università degli Studi di Milano, Milano, Italy, (2)Università degli Studi di Milano - Dept VESPA, Milano, Italy, (3)ANARB - Associazione Nazionale Allevatori di Razza Bruna, Bussolengo, Italy, (4)Università degli Studi di Milano, Milano, Italy

P0289: Genome Mapping, Tagging & Characterization: Cattle - Odd Genomic Variant Hotspots in Nelore Cattle Revealed By Missing Genotypes

Poliana F Giachetto1, Joaquim Manoel da Silva2, Luiz Otavio Campos da Silva3, Leandro C Cintra1, Samuel Rezende Paiva4, Alexandre R Caetano5 and Michel E Beleza Yamagishi6, (1)Embrapa Informática Agropecuária, Campinas, SP, Brazil, (2)Universidade do Estado de Mato Grosso, Nova Xavantina, Brazil, (3)Embrapa Gado de Corte, Campo Grande, MS, Brazil, (4)Embrapa Labex US – Secretariat of International Affairs, Fort Collins, CO, (5)Embrapa Recursos Genéticos e Biotecnologia, Brasilia, DF, Brazil, (6)Embrapa Informática Agropecuária, Campinas, SAO PAULO, Brazil P0290: Genome Mapping, Tagging & Characterization: Cattle - Even Transcriptional Networks Influencing Residual Feed Intake in Nelore Beef Cattle

Polyana C Tizioto1, Luiz Lehmann Coutinho2, Jared E Decker3, Robert D Schnabel4, Kamila O Rosa5, Priscila SN Oliveira1, Marcela M Souza6, Gerson B Mourão2, Rymer R Tullio1, Amalia S Chaves2, Dante PD Lanna2, Adhemar Zerlotini7, Mauricio A Mudadu1, Jeremy F Taylor4 and Luciana CA Regitano1, (1)Embrapa Southeast Livestock, São Carlos, Brazil, (2)ESALQ - USP, Piracicaba, SP, Brazil, (3)University of Missouri, Columbia, MO, (4)Division of Animal Sciences, University of Missouri, Columbia, MO, (5)UNESP, Jaboticabal, SP, Brazil, (6)UFSCAR, São Carlos, Brazil, (7)Embrapa Agricultural Informatics, Campinas, SP, Brazil P0291: Genome Mapping, Tagging & Characterization: Cattle - Odd Copy Number Variation of African Cattle Using Next Generation Sequencing at the Population Level

Donghyun Shin and Heebal Kim, Seoul National University, Seoul, South Korea

226

P0292: Genome Mapping, Tagging & Characterization: Cattle - Even Population Structure and Prevalence of Copy Number Variations within the Genome of South African Nguni Cattle

Magretha Diane Wang1, Kennedy Dzama2, Jasper Rees3 and Farai Catherine Muchadeyi1, (1)ARC Biotechnology Platform, Pretoria, South Africa, (2)University of Stellenbosch, Matieland, South Africa, (3)Agricultural Research Council, Gauteng, South Africa P0293: Genome Mapping, Tagging & Characterization: Cattle - Odd Exploring Genetic Architecture of Tick Resistance in South African Nguni Cattle

Ntanganedzeni Olivia Mapholi1, Azwihangwisi Maiwashe2, Oswald Matika3, Valentina Riggio3, Stephen C Bishop3, Michael D MacNeil4 and Kennedy Dzama5, (1)Agricultural Reasrch Council, Pretoria, South Africa, (2)Agricultural Research Council, Irene, South Africa, (3)The Roslin Institute and R(D)SVS, University of Edinburgh, Midlothian, United Kingdom, (4)Delta G, Miles City, MT, (5)University of Stellenbosch, Matieland, South Africa P0294: Genome Mapping, Tagging & Characterization: Cattle - Even Impact of Genomic Information on Variance Components Estimation in Small Populations with Incomplete Pedigree Information

Felipe de Jesús Ruiz, Centro Nal de Inv en Fis y Mej Animal INIFAP, Mexico, Mexico, Adriana García, CENID-Fisiología INIFAP, Ajuchitlán, Mexico and Román Ponce Sergio Ivan, CIR Pacífico Sur INIFAP, Oaxaca, Mexico

P0295: Genome Mapping, Tagging & Characterization: Cattle - Odd Genomic Scan to Detect Selection Footprints in African Cattle Populations Adapted to Different Agro-Ecologies

Zewdu Edea Bedada, Chungbuk National University, Cheongju, South Korea, Tadelle Dessie, International Livestock Research Institute, Addis Ababa, Ethiopia, Hailu Dadi Melka, Konkuk University, Seoul, South Korea and Kwan-Suk Kim, Chungbuk National University/Department of Animal Science, Chungcheongbuk, South Korea P0296: Genome Mapping, Tagging & Characterization: Cattle - Even Investigating Extreme Measures of Docility and Global DNA Methylation in the Bovine Brain

Bonnie Cantrell1, Hannah Lachance1, Rick Funston2, Robert Weaber3 and Stephanie McKay1, (1)University of Vermont, Burlington, VT, (2)University of Nebraska, North Platte, NE, (3)Kansas State University, Manhattan, KS P0297: Genome Mapping, Tagging & Characterization: Cattle - Odd Gene Networks Involved in Tenderness and Sensory Attributes of Steaks from Angus Beef Cattle

Justin W Buchanan1, James M Reecy2, Dorian J Garrick2 and Raluca Mateescu3, (1)Oklahoma State University, Stillwater, OK, (2)Department of Animal Science, Iowa State University, Ames, IA, (3)Dept of Animal Sciences, University of Florida, Gainesville, FL

P0298: Genome Mapping, Tagging & Characterization: Cattle - Even Genome Wide Association Study of Hoof Health Traits in Canadian Holsteins

Francesca Malchiodi1, Mehdi Sargolzaei2, Astrid Koeck1, Núria Chapinal3, David Kelton4, Flavio Schenkel1 and Filippo Miglior5, (1)Centre for Genetic Improvement of Livestock, University of Guelph, Guelph, ON, Canada, (2)Semex Alliance, Guelph, ON, Canada, (3)Animal Welfare Program, University of British Columbia, Vancouver, BC, Canada, (4)Department of Population Medicine, Ontario Veterinary College, University of Guelph, Guelph, ON, Canada, (5)Canadian Dairy Network & University of Guelph, Guelph, ON, Canada P0299: Genome Mapping, Tagging & Characterization: Cattle - Odd Comparison of Metabolic Network Between Muscle and Intramuscular Adipose Tissues in Hanwoo Beef Cattle Using a Systems Biology Approach

Woonsu Kim1, Hyesun Park1, Hyun-Jeong Lee2, Duhak Yoon3 and Seongwon Seo1, (1)Department of Animal Biosystem Sciences, Chungnam National University, Daejeon, South Korea, (2)National Institute of Animal science, Rural Development Administration, Suwon, South Korea, (3)Department of Animal Science, Kyungpook National University, Sangju, South Korea P0300: Genome Mapping, Tagging & Characterization: Cattle - Even Galanin Receptor 2 and Its Gene Interactions Affect Lean Yield and Marbling in Beef Steers

Jillian L Duncombe, Kayla M Madder and Fiona C Buchanan, University of Saskatchewan, Saskatoon, SK, Canada

P0301: Genome Mapping, Tagging & Characterization: Cattle - Odd Detecting Pleiotropic Loci for Weight, Conformation, Precocity and Muscling Traits in Nellore Cattle (Bos indicus) Via Multi-Trait Meta-Analysis

Yuri Tani Utsunomiya1, Anirene GT Pereira2, Tad S Sonstegard3, Carmen J Contreras- Castillo2 and Jose Fernando Garcia4, (1)Faculdade de Ciências Agrárias e Veterinárias, UNESP - Univ Estadual Paulista, Araçatuba, Brazil, (2)Universidade de São Paulo - USP, Piracicaba, Brazil, (3)Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD, (4)Sao Paulo State University / UNESP, Sao Paulo, Brazil P0302: Genome Mapping, Tagging & Characterization: Cattle - Even Multivariate Genome-Wide Association Study Across Six Breeds for Tenderness and Other Carcass Traits

Miranda L Wilson1, Robert D Schnabel2, Jeremy F Taylor2 and Jared E Decker3, (1)University of Missouri, COLUMBIA, MO, (2)Division of Animal Sciences, University of Missouri, Columbia, MO, (3)University of Missouri, Columbia, MO P0303: Genome Mapping, Tagging & Characterization: Cattle - Odd RNA-Seq Data Analysis of Bovine Liver and Pituitary Transcriptome

Chandra S Pareek1, Rafal Smoczynski1, Piotr Dziuba1, Marcin Sikora1, Marcin Golebiewski2, Feng Yaping3 and Dibyendu Kumar3, (1)Functional Genomics Lab WBiOS, Nicolaus Copernicus University in Torun, Torun, Poland, (2)Dept of plant physiology and biotechnology, WBiOS, Nicolaus Copernicus University in Torun, Torun, Poland, (3)Genomics Core Facility, Waksman Institute of Microbiology, New Jersey, NJ

227

P0304: Genome Mapping, Tagging & Characterization: Cattle - Even Whole-Genome Sequencing Identifies a Homozygous Deletion Encompassing Exons 17 to 22 of the Integrin Beta 4 Gene in a Charolais Calf with Junctional Epidermolysis Bullosa

Pauline Michot1, Oscar Fantini2, Régis Braques3, Aurélie Allais-Bonnet1, Romain Saintilan1, Cécile Grohs4, Johanna Barbieri5, Lucie Genestout6, Coralie Danchin7, Jean-Marie Gourreau8, Didier A Boichard4, Didier Pin2 and Aurélien Capitan1, (1)UNCEIA, Paris, France, (2)Université de Lyon, VetAgro Sup, UPSP 2011-03-101 Interactions Cellules Environnement, Marcy l'Etoile, France, (3)Cabinet des vignes de la fontaine, Saint-Pierre le Moutier, France, (4)INRA UMR1313 Animal Genetics and Integrative Biology, Jouy-en-Josas, France, (5)INRA, UMR444 LGC - GeT-PlaGe Genomics Facility, Castanet-Tolosan, France, (6)LABOGENA DNA, Jouy-en-Josas, France, (7)Institut de l’Elevage, Paris, France, (8)Unité de Pathologie du Bétail, Ecole Nationale Vétérinaire d'Alfort, Maison-Alfort, France P0305: Genome Mapping, Tagging & Characterization: Cattle - Odd Feedlot Performance and Immunology of Beef Steers Fed a Low Vitamin A Diet and Selected for ADH1C Genotype

Kayla M Madder1, Chris D Luby2, John J McKinnon1, G William Torres3 and Fiona C Buchanan1, (1)University of Saskatchewan, Saskatoon, SK, Canada, (2)Western College of Veterinary Medicine, Saskatoon, SK, Canada, (3)Cattleland Feedyards Ltd, Strathmore, AB, Canada

P0306: Genome Mapping, Tagging & Characterization: Cattle - Even Regulatory Networks for Feedlot Feed Efficiency in Angus Cattle Using Multiple Tissue Transcriptomics

Kristina Weber1, Laercio Portoneto2, Alison Van Eenennaam3, Antonio Reverter2 and Gonzalo Rincon1, (1)Zoetis, Kalamazoo, MI, (2)CSIRO Agriculture Flagship, Brisbane, Queensland, Australia, (3)University of California, Davis, Davis, CA P0307: Genome Mapping, Tagging & Characterization: Cattle - Odd Gené's Organ Transcriptome of the Southern Cattle Fever Tick, Rhipicephalus microplus

Jason P Tidwell1, Donald Thomas2, Christopher Vitek1, Robert Gilkerson1, Adalberto A Pérez de León3 and Matthew Terry1, (1)University of Texas-Pan American, Edinburg, TX, (2)USDA-ARS Cattle Fever Tick Research Laboratory, Edinburg, TX, (3)USDA-ARS Knipling-Bushland US Livestock Insects Research Laboratory and Veterinary Pest Genomics Center, Kerrville, TX P0308: Genome Mapping, Tagging & Characterization: Cattle - Even Genomic Organization and Expression of the Bovine NK-Lysin Gene Family

Junfeng Chen1, Polyana C Tizioto2, Jeremy F Taylor3, Maika Malig4, John Huddleston5 and James Womack1, (1)Texas A&M University, College Station, TX, (2)Embrapa Southeast Livestock, São Carlos, Brazil, (3)Division of Animal Sciences, University of Missouri, Columbia, MO, (4)University of Washington, Seattle, WA, (5)Department of Genome Sciences, Howard Hughes Medical Institute, University of Washington, Seattle, WA

P0309: Genome Mapping, Tagging & Characterization: Cattle - Odd Genome Wide Association Study Identifies Loci Associated with Mastitis Antibiotic Therapy Phenotypes Following Experimental Challenge with Streptococcus Uberis

Lydia J Siebert, The University of Tennessee, Knoxville, Knoxville, TN P0310: Genome Mapping, Tagging & Characterization: Cattle - Even Transcriptomics and Systems Biology of High Altitude Disease in Angus Cattle

Angela Cánovas1, Rebecca Cockrum2, Dale Brown3, Suzette Riddle3, Joe M Neary4, Tim Holt2, Greta Krafsur2, Frank Garry2, Juan F Medrano1, Alma Islas-Trejo1, Richard M Enns2, Scott E Speidel2, Kurt Stenmark3 and Milton Thomas2, (1)University of California-Davis, Davis, CA, (2)Colorado State University, Fort Collins, CO, (3)University of Colorado-Denver, Denver, CO, (4)Texas Tech University, Lubbock, TX P0311: Genome Mapping, Tagging & Characterization: Cattle - Odd An Across-Breed Genome Wide Association Analysis of Susceptibility to Paratuberculosis in Dairy Cattle

Ahmed M A Sallam, University of Wisconsin-Madison, Madison, WI

P0312: Genome Mapping, Tagging & Characterization: Cattle - Even Susceptibility and Molecular Mechanisms Underlying Bovine Respiratory Disease Complex

Polyana C Tizioto1, Jae Woo Kim1, Robert D Schnabel2, Laurel Gershwin3, Alison Van Eenennaam3, Rachel Toaff-Rosenstein3, Holly L Neibergs4, the Bovine Respiratory Disease Complex Coordinated Agricultural Project Research Team1 and Jeremy F Taylor2, (1)University of Missouri, Columbia, MO, (2)Division of Animal Sciences, University of Missouri, Columbia, MO, (3)University of California, Davis, Davis, CA, (4)Washington State University, Pullman, WA P0313: Genome Mapping, Tagging & Characterization: Cattle - Odd Changes in miRNA in Response to Infection with Bovine Viral Diarrhoea Virus in Cattle

John Williams1, Andrea Viglino2, Andrea Trovato2, Francesca Dilda2, Daniela Iamartino2 and Chiara Gorni2, (1)Fondazione Parco Tecnologico Padano, Lodi, Italy, (2)Parco Tecnologico Padano, Lodi, Italy P0314: Genome Mapping, Tagging & Characterization: Cattle - Even Characterization of Alleles Associated with White Spotting in North American Domestic Yaks (Bos grunniens)

Jenifer Cruickshank and Julia M Yurco, State University of New York at Oswego, Oswego, NY

228

P0315: Genome Mapping, Tagging & Characterization: Cattle - Odd Molecular Cytogenetics of the Minute chromosome Syndrome in Alpacas

Terje Raudsepp, Texas A&M University, College Station, TX, Felipe Avila, Department of Veterinary Population Medicine, University of Minnesota, St Paul, MN, Malorie P Baily, Texas A&M University, College Station, TX, College Station, TX, Andrew Merriwether, Binghamton University, Vestal, NY, Binghamton, NY and Michelle Kutzler, Department of Animal and Rangeland SciencesOregon State University, Corvallis, OR P0316: Genome Mapping, Tagging & Characterization: Cattle - Even New Insights into QTL Region on BTA14 Using Gayal (Bos frontalis) and Bangladeshi Indicine Cattle Breeds

Kwan Suk Kim, Chungbuk National University/Department of Animal Science, Cheongju, South Korea, Md Rasel Uzzaman, Chungbuk National University,, Cheongju, South Korea and Zewdu Edea Bedada, Chungbuk National University, Chungcheongbuk-do, South Korea P0317: Genome Mapping, Tagging & Characterization: Equine - Odd Discordant SNP Genotyping Between the Illumina Equine54K and 75KSNP Platforms Causing False Positive Associations

Sian Ann Durward-Akhurst, University of Minnesota, St Paul, MN, Stephanie J Valberg, University of Minnesota, St Paul, MN and Carrie J Finno, University of California-Davis, Davis, CA

P0318: Genome Mapping, Tagging & Characterization: Equine - Even Selection of Tagging SNPs and Imputation Efficiency of the 670K Commercial SNP Chip

Rob Schaefer, Computational Biology & Functional Genomics Laboratory, Minneapolis, MN, Ludovic Orlando, Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark, JR Mickelson, University of Minnesota, St Paul, MN and ME McCue, Dept of Veterinary Population Medicine, Univ of MN, St Paul, MN P0319: Genome Mapping, Tagging & Characterization: Equine - Odd Towards a High-Standard Reference Genome of Horses with Whole Genome Physical Mapping and the Integration of Genome Sequences

Bin LIU1, Alex Hastie2, Zhongwei Qiu1, Aladaer Qi1, Gemenggul Muhantay3, Saki Chan2, Jianchao Wang1, Xue Liang1, Mengjie Qiu1, Songnian Hu4, Xiaojun Wang5, Lingyan Li6, An Li7, Hong-Bin Zhang8, Donald Miller9, Douglas Antczak9, Ted Kalbfleisch10, Han Cao2 and Ernest Bailey11, (1)Center of Systematic Genomics, Xinjiang Institute of Ecology and Geography/Institute of Oceanology, Chinese Academy of Sciences, Urumqi, Xinjiang, China, (2)BioNano Genomics, San Diego, CA, (3)Tarim University, Alar, China, (4)Beijing Institute of Genomics, Chinese Academy of Science, Beiing, China, (5)Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China, (6)Beijing Vocational College of Agriculture, Beijing, China, (7)Xinjiang Vocational College of Agriculture, Changji, China, (8)Texas A&M University, College Station, TX, (9)Cornell University, Ithaca, NY, (10)Center for Environmental Genomics and Integrative Biology, University of Louisville, Louisville, KY, (11)University of Kentucky, Lexington, KY

P0320: Genome Mapping, Tagging & Characterization: Equine - Even Work Toward EquCab3: A New Reference Genome Sequence for the Domestic Horse

Theodore S Kalbfleisch, University of Louisville, Louisville, KY, Ludovic Orlando, Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark and James N MacLeod, Department of Veterinary Science, University of Kentucky, Lexington, KY P0321: Genome Mapping, Tagging & Characterization: Equine - Odd Genomic Signatures of Selection in the American Quarter Horse

Felipe Avila, Department of Veterinary Population Medicine, University of Minnesota, St Paul, MN, Jessica L Petersen, University of Nebraska - Lincoln, Lincoln, NE, JR Mickelson, University of Minnesota, St Paul, MN and ME McCue, Dept of Veterinary Population Medicine, Univ of MN, St Paul, MN P0322: Genome Mapping, Tagging & Characterization: Equine - Even Sequencing, de novo Assembly and Functional Analysis of the Male Specific Region of the Horse Y Chromosome

Terje Raudsepp1, Jan E Jane$ka2, Nandina Paria3, Pranab J Das4, Daniel Winston Bellott5, Jennifer F Hughes5, David C Page5 and Bhanu P Chowdhary6, (1)Texas A&M University, College Station, TX, (2)Duquesne University, Biological Sciences, Pittsburgh, PA, (3)Sarah M and Charles E Seay Center for Musculoskeletal Research, Texas Scottish Rite Hospital for Children, Dallas, TX, (4)National Research Centre on Yak (ICAR), Dirang, India, (5)Whitehead Institute, Howard Hughes Medical Institute, & Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, (6)Qatar University, Doha, Qatar

P0323: Genome Mapping, Tagging & Characterization: Equine - Odd Evolutionary Genomics of Equine Species: A History of Adaptation, Gene Flow, and Expansion out of the Americas

Hákon Jónsson1, Mikkel Schubert2, Andaine Seguin-Orlando3, Aurélien Ginolhac1, Lillian Petersen4, Matteo Fumagalli5, Anders Albrechtsen6, Bent Petersen7, Thorfinn S Korneliussen1, Julia Vilstrup8, Teri Lear9, Jennifer Myka9, Judith Lundquist9, Donald Miller10, Ahmed H Ahmed11, Saleh A Alquraishi11, Khaled AS AL-Rasheid12, Julia Stagegaard13, Günter Strauss14, Mads Frost Bertelsen15, Thomas Sicheritz-Ponten7, Douglas Antczak10, Ernest Bailey9, Rasmus Nielsen16, Eske Willerslev8 and Ludovic Orlando2, (1)Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen K, Denmark, (2)Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark, (3)Danish National High-throughput DNA Sequencing Centre, Copenhagen, Denmark, (4)National High-throughput DNA Sequencing Centre, Copenhagen, Denmark, (5)Departments of Integrative Biology and Statistics, Berkeley, CA, (6)Bioinformatics Centre, University of Copenhagen, Copenhagen, Denmark, (7)Center for Biological Sequence Analysis, Lyngby, Denmark, (8)Centre for GeoGenetics, Natural History Museum of Denmark, Copenhagen, Denmark, (9)Maxwell H Gluck Equine Research Center, Veterinary Science Department, University of Kentucky, Lexington, KY, (10)Cornell University, Ithaca, NY, (11)Zoology Department, College of Science, King Saud University, Riyadh, Saudi Arabia, (12)Zoology Department, College of Science, Riyadh, Saudi Arabia, (13)Ree Park-Ebeltoft Safari, Ebeltoft, Denmark, (14)Tierpark Berlin-Friedrichsfelde GmbH, Berlin, Germany, (15)Copenhagen Zoo, Frederiksberg, Denmark, (16)Department of Integrative Biology and Statistics, Berkeley, CA

229

P0324: Genome Mapping, Tagging & Characterization: Equine - Even Illuminating the Genetic Foundation and Cost of Horse Domestication with Ancient DNA

Mikkel Schubert1, Hákon Jonsson2, Dan Chang3, Clio Der Sarkissian2, Luca Ermini2, Aurélien Ginolhac2, Anders Albrechtsen4, Isabelle Dupanloup5, Adrian Foucal5, Bent Petersen6, Matteo Fumagalli7, Maanasa Raghavan8, Andaine Seguin-Orlando9, Thorfinn S Korneliussen2, Ahmed Missael Vargas Velazquez8, Jesper Stenderup8, Cindi A Hoover10, Carl-Johan Rubin11, Ahmed H Ahmed12, Saleh A Alquraishi12, Khaled AS AL-Rasheid13, David E MacHugh14, Theodore S Kalbfleisch15, James N MacLeod16, Edward M Rubin10, Thomas Sicheritz-Ponten6, Leif Andersson17, Michael Hofreiter18, Thomas Marques-Bonet19, M Thomas P Gilbert2, Rasmus Nielsen20, Laurent Excoffier5, Eske Willerslev8, Beth Shapiro21 and Ludovic Orlando1, (1)Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark, (2)Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen K, Denmark, (3)Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, Santa Cruz, CA, (4)Bioinformatics Centre, University of Copenhagen, Copenhagen, Denmark, (5)Swiss Institute of Bioinformatics, Lausanne, Switzerland, (6)Center for Biological Sequence Analysis, Lyngby, Denmark, (7)UCL Genetics Institute, Department of Genetics, Evolution and Environment, University College London, London, United Kingdom, (8)Centre for GeoGenetics, Natural History Museum of Denmark, Copenhagen, Denmark, (9)Danish National High-throughput DNA Sequencing Centre, Copenhagen, Denmark, (10)DOE Joint Genome Institute, Walnut Creek, CA, (11)Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden, (12)Zoology Department, College of Science, King Saud University, Riyadh, Saudi Arabia, (13)Zoology Department, College of Science, Riyadh, Saudi Arabia, (14)University College Dublin, Dublin, Ireland, (15)University of Louisville, Louisville, KY, (16)Department of Veterinary Science, University of Kentucky, Lexington, KY, (17)Uppsala University, Uppsala, Sweden, (18)Department of Biology, University of York, York, United Kingdom, (19)ICREA at the Institut de Biologia Evolutiva (Univ Pompeu Fabra/CSIC), Barcelona, Spain, (20)Department of Integrative Biology and Statistics, Berkeley, CA, (21)Department of Ecology and Evolutionary Biology, Santa Cruz, CA

P0325: Genome Mapping, Tagging & Characterization: Equine - Odd Large-Scale Mitochondrial Genome Analysis of the Modern Horses: Perspectives on Their Domestication History

SH Yoon, Department of Agricultural Biotechnology and Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, South Korea, Seoae Cho, C & K Genomics, Seoul, South Korea and Heebal Kim, Seoul National University, Seoul, South Korea P0326: Genome Mapping, Tagging & Characterization: Equine - Even Population History and Structure of Modern Horse Breeds

Lynsey K Whitacre, Division of Animal Sciences, University of Missouri, Columbia, MO and Jared E Decker, University of Missouri, Columbia, MO P0327: Genome Mapping, Tagging & Characterization: Equine - Odd SERPINB11 Associated with Novel Hoof Specific Phenotype in Connemara Ponies

Danika Bannasch1, Carrie J Finno2, Carlynn Stevens1, Amy Young3, Verena Affolter1, Nikhil Joshi1 and Sheila Ramsey4, (1)University of California Davis, Davis, CA, (2)University of California-Davis, Davis, CA, (3)University of California, Davis, Davis, CA, (4)Massey University, Palmerston North, New Zealand P0328: Genome Mapping, Tagging & Characterization: Equine - Even Genomic Polymorphism in Six Diverse Horse Breeds

Mohammed A Al Abri1, Sara E Kalla2, Douglas Antczak1, Nathan B Sutter3 and Samantha A Brooks4, (1)Cornell University, Ithaca, NY, (2)Clinical Sciences, Cornell University, Ithaca, NY, (3)La Sierra University, Department of Biology, Riverside, CA, (4)University of Florida, Gainesville, FL

P0329: Genome Mapping, Tagging & Characterization: Equine - Odd Genome Wide Association of Temperament Variation in the Tennessee Walking Horse

Elizabeth A Staiger, Cornell University, Ithaca, NY, Julie D Albright, University of Tennessee, Knoxville, TN and Samantha A Brooks, University of Florida, Gainesville, FL P0330: Genome Mapping, Tagging & Characterization: Equine - Even Genome-Wide Association Study of Shivers in Clydesdale Horses

Jessica L Petersen, University of Nebraska - Lincoln, Lincoln, NE, Carrie J Finno, University of California-Davis, Davis, CA and Stephanie J Valberg, University of Minnesota, St Paul, MN P0331: Genome Mapping, Tagging & Characterization: Equine - Odd Differential Gene Expression of Novel Lamellar Transcripts in Healthy and Laminitic Horses

Heather M Holl1, Hannah L Galantino-Homer2 and Samantha A Brooks1, (1)University of Florida, Gainesville, FL, (2)University of Pennsylvania, Philadelphia, PA P0332: Genome Mapping, Tagging & Characterization: Equine - Even Skeletal Muscle Gene Expression Profile in Type 1 Polysaccharide Storage Myopathy

Raffaella Teixeira1, JR Mickelson1, Stephanie J Valberg1 and ME McCue2, (1)University of Minnesota, St Paul, MN, (2)Dept of Veterinary Population Medicine, Univ of MN, St Paul, MN

P0333: Genome Mapping, Tagging & Characterization: Equine - Odd Involvement of CNVs in Equine Cryptorchidism

Sharmila Ghosh1, Pranab J Das2, Justin Jaxtheimer1, Stephanie Grissom1, Carolyn Arnold1, Dickson Varner1, Bhanu P Chowdhary3 and Terje Raudsepp1, (1)Texas A&M University, College Station, TX, (2)National Research Centre on Yak (ICAR), Dirang, India, (3)Qatar University, Doha, Qatar P0334: Genome Mapping, Tagging & Characterization: Equine - Even Unique Patterns of Gene Expression in Equine Articular Chondrocytes

Emma N Adam1, Yan Huang2, Stephen Coleman3, Joshua W Lambert4, Arnold J Stromberg4, Jinze Liu2 and James N MacLeod1, (1)Department of Veterinary Science, University of Kentucky, Lexington, KY, (2)Department of Computer Science, University of Kentucky, Lexington, KY, (3)Department of Microbiology, Immunology and Pathology, Colorado State University, Fort Collins, CO, (4)Department of Statistics, University of Kentucky, Lexington, KY P0335: Genome Mapping, Tagging & Characterization: Equine - Odd Gene Loci for Recurrent Exertional Rhabdomyolysis in Thoroughbreds and Standardbreds

Samantha K Beeson1, JR Mickelson1, Matthew M Binns2, Sarah Blott3, P Caputo4, CM Isgren5, A Moore6, RJ Piercy7, J Swinburne3, M Vaudin3 and ME McCue8, (1)University of Minnesota, St Paul, MN, (2)Equine Analysis Systems, LLC, Midway, KY, (3)Animal Health Trust, Kentford, United Kingdom, (4)Paul Caputo, DVM, Parkland, FL, (5)The Norwegian School of Veterinary Science, Olso, Norway, (6)Moore Equine Services, Ontario, ON, Canada, (7)The Royal Veterinary College, London, England, (8)Dept of Veterinary Population Medicine, Univ of MN, St Paul, MN

230

P0336: Genome Mapping, Tagging & Characterization: Equine - Even Heritability of Recurrent Exertional Rhabdomyolyis in Thoroughbred and Standardbred Racehorses

EM Norton1, JR Mickelson2, MM Binns3, S Blott4, P Caputo5, CM Isgren6, A Moore7, RJ Piercy8, J Swinburne4, M Vaudin4 and ME McCue9, (1)University of Minnesota College of Veterinary Medicine, White Bear Lake, MN, (2)University of Minnesota, St Paul, MN, (3)Equine Analysis Systems, LLC, Midway, KY, (4)Animal Health Trust, Kentford, United Kingdom, (5)Paul Caputo, DVM, Parkland, FL, (6)The Norwegian School of Veterinary Science, Olso, Norway, (7)Moore Equine Services, Ontario, ON, Canada, (8)The Royal Veterinary College, London, England, (9)Dept of Veterinary Population Medicine, Univ of MN, St Paul, MN P0337: Genome Mapping, Tagging & Characterization: Equine - Odd CYP7A1 Is Significantly Up-Regulated in Spinal Cord from Horses Affected with Equine Neuroaxonal Dystrophy (NAD)

Carrie J Finno1, Stephanie J Valberg2 and JR Mickelson2, (1)University of California-Davis, Davis, CA, (2)University of Minnesota, St Paul, MN P0338: Genome Mapping, Tagging & Characterization: Equine - Even A Non-Synonymous Change in Latrophilin-3 Associated with Equine Degenerative Myeloencephalopathy

Christian J Posbergh1, Thomas J Divers1, Geoff E Pollott2 and Samantha A Brooks3, (1)Cornell University, Ithaca, NY, (2)The Royal Veterinary College, London, United Kingdom, (3)University of Florida, Gainesville, FL

P0339: Genome Mapping, Tagging & Characterization: Equine - Odd Immune Response Phenotypes for Equine Viral Arteritis (EVA) Associated with Alleles of CXCL16

Ernest Bailey1, Yun Young Go2, John Edmund Eberth1, Kathy Shuck1, Frank Cook1, Bora Nam1, Theodore S Kalbfleisch3, Peter Timoney1 and Udeni B R Balasuriya1, (1)University of Kentucky, Lexington, KY, (2)Divisoni of Drug Discovery Research, Daejon, South Korea, (3)University of Louisville, Louisville, KY P0340: Genome Mapping, Tagging & Characterization: Equine - Even Targeted SNP Testing of Horses Bearing Sarcoid Tumors

Hannah J Lynaugh1, Ethan Hefner2, Donald Miller1, Maja Al-Jabri1, Jordan Gless1, Ram Singh1, Maria Bateson1, Elizabeth A Staiger1, Samantha A Brooks3, Elizabeth Buckles1 and Douglas Antczak1, (1)Cornell University, Ithaca, NY, (2)North Carolina State University, Raleigh, NC, (3)University of Florida, Gainesville, FL P0341: Genome Mapping, Tagging & Characterization: Equine - Odd Genetic Investigation of Limbal Squamous Cell Carcinoma in Haflinger Horses

Rebecca Bellone1, Suellen Sa2, Mindy Huynh2, Rhianna Seferian2, Jiayin Liu1 and Mary Lassaline1, (1)University of California-Davis, Davis, CA, (2)University of Tampa, Tampa, FL

P0342: Genome Mapping, Tagging & Characterization: Equine - Even Investigation and Validation of Variants Underlying Osteochondrosis Risk in the Horse

ME McCue1, AM McCoy1, Sigrid Lykkjen2, Sarah Ralston3 and JR Mickelson4, (1)Dept of Veterinary Population Medicine, Univ of MN, St Paul, MN, (2)Norwegian School of Veterinary Science, Oslo, Norway, (3)Rutgers University, New Brunswick,, NJ, (4)University of Minnesota, St Paul, MN P0343: Genome Mapping, Tagging & Characterization: Equine - Odd The Recurrent Airway Obstruction Restricted Lung Transcriptome Identifies Molecular Signatures of Airway Hyperresponsiveness and Neutrophilic Inflammation

Lauren Ashley Bright1, Mark Arick II2, Santosh Kumar TK1, Savannah Mack1, Andy Perkins3, Courtney Hunter1, Alison Eddy1, Andrew Claude1, Nisma Mujahid1, Michael Brashier1, Bindu Nanduri4, Shane C Burgess5 and Cyprianna Swiderski1, (1)Department of Clinical Sciences, Mississippi State, MS, (2)Institute for Genomics, Biocomputing and Biotechnology, Mississippi State, MS, (3)Department of Computer Science and Engineering, Mississippi State, MS, (4)Department of Basic Sciences, Mississippi State, MS, (5)College of Agriculture and Life Sciences, University of Arizona, AZ

P0344: Genome Mapping, Tagging & Characterization: Swine - Even Genomics Meets Metabolomics: Developing a Systems Biology Approach to Understand the Genetic Mechanisms Affecting Complex Traits in Pigs

Luca Fontanesi1, Samuele Bovo2, Gianluca Mazzoni1, Giuseppina Schiavo1, Antonia Bianca Samorè1, Flaminia Fanelli3, Francesca Bertolini1, Emilio Scotti1, Giuliano Galimberti4, Daniela Giovanna Calò4, Marco Mezzullo3, Pier Luigi Martelli5, Rita Casadio5, Stefania Dall'Olio1 and Uberto Pagotto3, (1)Department of Agricultural and Food Sciences, University of Bologna, Bologna, Italy, (2)Department of Agricultural Sciences, University of Bologna, Bologna, Italy, (3)Department of Medical and Surgical Sciences, Endocrynology Unit, University of Bologna, Bologna, Italy, (4)Department of Statistical Sciences, University of Bologna, Bologna, Italy, (5)Biocomputing Group, University of Bologna, Bologna, Italy P0345: Genome Mapping, Tagging & Characterization: Swine - Odd Variable Selection in Whole-Genome Association Studies Using Lasso-Based Techniques

Tianfu Yang, Graham S Plastow and Zhiquan Wang, University of Alberta, Edmonton, AB, Canada P0346: Genome Mapping, Tagging & Characterization: Swine - Even Genetic Variation in microRNAs’ Seed Regions Contribute to Different Clinical Syndromes to HP-PRRSV Infection Across Pig Breeds

Jia Li, China Agricultural University, Beijing, China

231

P0347: Genome Mapping, Tagging & Characterization: Swine - Odd Improving Porcine Transcriptome Annotation By Integrating EST, mRNAs and Whole Blood RNA-Seq Data

Haibo Liu, Bioinformatics and Computational Biology Program, Department of Animal Science, Iowa State University, Ames, IA and Christopher K Tuggle, Iowa State University, Ames, IA P0348: Genome Mapping, Tagging & Characterization: Swine - Even Genome-Wide Association Analyses of Biological Responses to Heat Stress in Pigs

Max F Rothschild1, Kwan Suk Kim2, Eui-Soo Kim1, Jacob T Seibert1, Aileen F Keating1, Sangwook Kim3, Jason W Ross1 and Lance H Baumgard1, (1)Iowa State University, Ames, IA, (2)Chungbuk National University/Department of Animal Science, Cheongju, South Korea, (3)Chungbuk National University, Cheongju, South Korea P0349: Genome Mapping, Tagging & Characterization: Swine - Odd Production of GGTA1 Targeted Pigs Using TALEN-Mediated Genome Editing Technology

Jungtaek Kang, GIBLUE biotechnology research institute, Seoul, South Korea and Kwang-Wook Park, Sunchon National University, Sunchon, South Korea

P0350: Genome Mapping, Tagging & Characterization: Swine - Even Genome Wide Analysis of Porcine miRNA Editing

Anoop Arya1, Richard PMA Crooijmans2, Elisabetta Giuffra3, Martien AM Groenen2 and Ole Madsen2, (1)INRA, AgroParisTech, UMR1313 Animal Genetics and Integrative Biology, Jouy-en-Josas, France; CEA, DSV, IRCM, SREIT, LREG,, Jouy-En-Josas, France, (2)Wageningen University, Wageningen, Netherlands, (3)INRA, UMR de Génétique Animale et Biologie Intégrative, Jouy-en-Josas, France P0351: Genome Mapping, Tagging & Characterization: Swine - Odd Multi-Population Genomic Selection in Pigs

Renata Veroneze1, John Bastiaansen2, Marcos Soares Lopes3, Barbara Harlizius3, Paulo S Lopes4, Egbert F Knol3, Simone EF Guimarães4 and Johan van Arendonk2, (1)Universidade Federal de Viçosa and Wageningen University, Viçosa, Brazil, (2)Wageningen University, Animal Breeding and Genomics Centre, Wageningen, Netherlands, (3)TOPIGS Norsvin Research Center, Beuningen, Netherlands, (4)Universidade Federal de Viçosa, Viçosa, Brazil P0352: Genome Mapping, Tagging & Characterization: Swine - Even Annotation-Based Whole Genomic Prediction and Selection: An Application to Feed Efficiency and Growth Traits in Pigs

Haja N Kadarmideen1, Duy N Do2, Luc LLG Janss3 and Just Jensen3, (1)University of Copenhagen, Frederiksberg C, Denmark, (2)University of Copenhagen, Frederiksberg, Denmark, (3)Aarhus University, Tjele, Denmark

P0353: Genome Mapping, Tagging & Characterization: Swine - Odd The SLA Haplotype Analysis in Yucatan Miniature Pigs in Korea

Dongwon Seo1, Nu Ri Choi1, Kimyung Choi2, Woo-Young Jung3 and Jun Heon Lee1, (1)Department of Animal Science and Biotechnology, College of Agriculture and Life Sciences, Chungnam National University, Daejeon, South Korea, (2)Optipharm Solution Inc, Chungbuk, South Korea, (3)National Agricultural Cooperative Federation, Seosan, South Korea P0354: Genome Mapping, Tagging & Characterization: Swine - Even Genome Wide Distributions and Functional Characterization of Copy Number Variations Between Chinese and Western Pigs

Hongyang Wang1, Chao Wang2, Kui Yang2, Jing Liu2, Yu Zhang2, Yanan Wang3, Xuewen Xu2, Zhihua Jiang4 and Bang Liu2, (1)Huazhong Agricutural University, Wuhan, China, (2)Huazhong Agricultural University, Wuhan, China, (3)Iowa State University, Ames, IA, (4)Washington State University, Pullman, WA P0355: Genome Mapping, Tagging & Characterization: Swine - Odd Twenty Years of Artificial Directional Selection Have Shaped the Genome of the Italian Large White Pig Breed

Luca Fontanesi1, Giuseppina Schiavo1, Giuliano Galimberti2, Daniela Giovanna Calò2, Emilio Scotti1, Antonia Bianca Samorè1, Vincenzo Russo1, Maurizio Gallo3 and Luca Buttazzoni4, (1)Department of Agricultural and Food Sciences, University of Bologna, Bologna, Italy, (2)Department of Statistical Sciences, University of Bologna, Bologna, Italy, (3)Associazione Nazionale Allevatori Suini (ANAS), Roma, Italy, (4)Consiglio per la Ricerca e la Sperimentazione in Agricoltura, Centro di Ricerca per la Produzione delle Carni e il Miglioramento Genetico, Roma, Italy

P0356: Genome Mapping, Tagging & Characterization: Swine - Even Analyzing the Muscle Transcriptome and the Splicing Variants of Pigs with Divergent Lipid Phenotypes Through RNA-Seq

Taina Cardoso1, Marcel Amills1, Oriol Canela2, Rayner Gonzalez1, Raquel Quintanilla2 and Angela Canovas1, (1)Center for Research in Agricultural Genomics - University Autonomus of Barcelona, Bellaterra, Spain, (2)Center for Research & Technology, Food & Agriculture, Caldes de Montbui, Spain P0357: Genome Mapping, Tagging & Characterization: Swine - Odd Whole Genome-Wide Detection of Selection Signatures in Korean Native Black Pig from Jeju Island

Jaemin Kim1, Heebal Kim1 and Seoae Cho2, (1)Seoul National University, Seoul, South Korea, (2)C & K Genomics, Seoul, South Korea P0358: Genome Mapping, Tagging & Characterization: Swine - Even Intestinal Microbiota Profile of Pigs With and Without In-Feed Antibiotics

Mauricio Egidio Cantao1, Caroline Pissetti2, Jalusa Deon Kich1, Sara Zarth3, Nelson Mores1 and Marisa Cardoso2, (1)Embrapa Swine and Poultry, Concordia, Brazil, (2)University of Rio Grande do Sul, Porto Alegre, Brazil, (3)Santa Catarina State University, Lages, Brazil P0359: Genome Mapping, Tagging & Characterization: Swine - Odd Origin and Phylogenetic Status of the Local Ashanti Dwarf Pig (ADP) of Ghana Based on Evidence from mtDNA Analysis, MC1R and Y-Chromosome Haplotypes

Richard Osei-Amponsah, University of Ghana, Legon, Accra, Ghana

232

P0360: Genome Mapping, Tagging & Characterization: Swine - Even Association Analyses Between Missense Variation at 70 Candidate Genes and Porcine Lipid Metabolism Traits

Rayner Gonzalez1, Angela Canovas2, Arianna Manunza3, Sergi Beltran Beltran4, Raul Tonda4, Raquel Quintanilla5 and Marcel Amills1, (1)Center for Research in Agricultural Genomics - University Autonomus of Barcelona, Bellaterra, Spain, (2)Center for Research in Agricultural Genomics - University Autonomus of Barcelona, Barcelona, Spain, (3)Center for Research in Agricultural Genomics, Bellaterra, Spain, (4)Centre Nacional d'Anàlisi Genòmica, Barcelona, Spain, (5)IRTA, Caldes de Montbui, Spain P0361: Genome Mapping, Tagging & Characterization: Swine - Odd Genetic Analysis of the Response to ACTH in Pigs, Relationships with Robustness Traits

Pierre Mormede1, Elena Terenina1, Laure Gress1, Yvon Billon2, Stephane Ferchaud3 and Catherine Larzul4, (1)INRA (Institut National de la Recherche Agronomique), Castanet-Tolosan, France, (2)INRA, UE1372 GenESI, Saint-Pierre-d'Amilly, France, (3)INRA (Institut National de la Recherche Agronomique), Saint-Pierre-d'Amilly, France, (4)INRA, UMR1388 GENPHYSE, Castanet-Tolosan, France P0362: Genome Mapping, Tagging & Characterization: Swine - Even DEG Analyses Identifie Differences in Testicular Tissues of Large White and Luchuan Pigs

Yao Liu, Jialian Li, Xiaolei Liu and Bin Fan, Huazhong Agricultural University, Wuhan, China

P0363: Genome Mapping, Tagging & Characterization: Swine - Odd Gut Microbiota in Swine: Composition, Genetic Parameters, and Links with Immunity and Production Traits

Jordi Estellé1, Núria Mach1, Catherine Larzul2, Mustapha Berri3, Yuliaxis Ramayo-Caldas1, Yvon Billon4, Joël Doré5, Patricia Lepage5 and Claire Rogel-Gaillard1, (1)INRA, UMR1313 Animal Genetics and Integrative Biology, Jouy-en-Josas, France, (2)INRA, UMR1388 GENPHYSE, Castanet-Tolosan, France, (3)INRA, UMR1282 ISP, Nouzilly, France, (4)INRA, UE1372 GenESI, Saint-Pierre-d'Amilly, France, (5)INRA, UMR MICALIS, Jouy-en-Josas, France P0364: Genome Mapping, Tagging & Characterization: Swine - Even Deep Sequencing of Transcriptome Profiling of GSTM2 Knock-Down Swine Testis Cell

Yuqi Lv, Yongqiang Zhou and Zhuqing Ren, Key Laboratory of Swine Genetics and Breeding of Ministry of Agriculture & Key Laboratory of Agriculture Animal Genetics, Breeding and Reproduction of Ministry of Education, College of Animal Science, Huazhong Agricultural University, Wuhan, China P0365: Genome Mapping, Tagging & Characterization: Swine - Odd Genome-Wide DNA Methylation Profiles of Fast-Growing and Slow-Growing Weaning Piglets

Woori Kwak1, Seoae Cho2 and Heebal Kim1, (1)Seoul National University, Seoul, South Korea, (2)C & K Genomics, Seoul, South Korea

P0366: Genome Mapping, Tagging & Characterization: Swine - Even Beyond GWAS: A Gene-Transcription Factor Network for Number of Teats in Pigs

Lucas L Verardo1, Simone EF Guimarães1, Fabyano F Silva1, Matthew Kelly2, Ole Madsen3, Marcos S Lopes3, Paulo S Lopes1 and Egbert Knol4, (1)Universidade Federal de Viçosa, Viçosa, Brazil, (2)Queensland Alliance for Agriculture & Food Innovation, St Lucia, Australia, (3)Wageningen University, Wageningen, Netherlands, (4)Topigs Norsvin, Beuningen, Netherlands P0367: Genome Mapping, Tagging & Characterization: Swine - Odd Genomic Analysis of the Interaction Between Energy Intake and SNP Genotypes on Age at Puberty

Melanie Trenhaile, Stephen D Kachman, Phillip S Miller, Rodger K Johnson and Daniel C Ciobanu, University of Nebraska, Lincoln, NE P0368: Genome Mapping, Tagging & Characterization: Swine - Even A Candidate Gene-Transcription Factor Network for Number of Stillborn Piglets

Simone Guimaraes1, Lucas L Verardo2, Fabyano F Silva2, Matthew Kelly3, Ole Madsen4, Marcos S Lopes4, Paulo S Lopes2 and Egbert Knol5, (1)Universidade Federal de VIçosa, Viçosa, Brazil, (2)Universidade Federal de Viçosa, Viçosa, Brazil, (3)Queensland Alliance for Agriculture & Food Innovation, St Lucia, Australia, (4)Wageningen University, Wageningen, Netherlands, (5)Topigs Norsvin, Beuningen, Netherlands

P0369: Genome Mapping, Tagging & Characterization: Swine - Odd MiR-195/497 Inhibited Myoblast Proliferation through Targeting Igf1r, Insr and Cyclin Related Genes and Were Negatively Transcriptional Regulated By NF-Kb

Xinyun Li, Huazhong Agricultural University, College of Animal Science, Wuhan, China P0370: Genome Mapping, Tagging & Characterization: Swine - Even A Study of Vertebra Number in Pigs Confirms the Effect of Vertnin and Reveals Additional QTL

Gary A Rohrer, Dan Nonneman and Jim F Schneider, USDA, ARS, USMARC, Clay Center, NE P0371: Genome Mapping, Tagging & Characterization: Swine - Odd Validation of Genetic Makers for Pig Resistance to PRRSV Infection

Pengxia Niu1, Nadeen Shabir2, Amina Khatun2, Suna Gu3, Kwan-Suk Kim4, Sang-Myoung Lee3 and Won-Il Kim2, (1)Chungbuk National University/Department of Animal Science, Cheongju, South Korea, (2)Chonbuk National University/College of Veterinary Medicine, Jeonju, South Korea, (3)Chonbuk National University/Division of Biotechnology, Jeonju, South Korea, (4)Chungbuk National University/Department of Animal Science, Chungcheongbuk, South Korea P0372: Genome Mapping, Tagging & Characterization: Swine - Even Identification of QTL Responsible for the Immune Response to Porcine Reproductive and Respiratory Syndrome (PRRS) Virus Infection

Igseo Choi and Joan K Lunney, APDL, BARC, ARS, USDA, Beltsville, MD

233

P0373: Genome Mapping, Tagging & Characterization: Swine - Odd The Recent Update of the Swine Leukocyte Antigen (SLA) Nomenclature System

Jun Heon Lee, Department of Animal Science and Biotechnology, College of Agriculture and Life Sciences, Chungnam National University, Daejeon, South Korea, Sabine Hammer, Institute of Immunology, Department of Pathobiology, University of Veterinary Medicine Vienna, Vienna, Austria, Asako Ando, Department of Molecular Life Science, Division of Basic Medical Science and Molecular Medicine, Tokai University School of Medicine, Isehara, Kanagawa, Japan, Claire Rogel-Gaillard, INRA, UMR1313 Animal Genetics and Integrative Biology, Jouy-en-Josas, France, Lawrence B Schook, University of Illinois, Urbana, IL, Douglas Smith, University of Michigan (retired), Ann Arbor, MI, Joan K Lunney, APDL, BARC, ARS, USDA, Beltsville, MD and Chak-Sum Ho, Histocompatibility Laboratory, Gift of Life Michigan, Ann Arbor, MI P0374: Genome Mapping, Tagging & Characterization: Swine - Even Swine Leukocyte Antigen Class-II Region Is Associated with Variation in Porcine Circovirus 2b Susceptibility

Emily Tosky1, Taylor Engle1, Emily Davis1, Shyamaly Premaraj1, Graham S Plastow2, Stephen D Kachman1 and Daniel C Ciobanu1, (1)University of Nebraska, Lincoln, NE, (2)University of Alberta, Edmonton, AB, Canada P0375: Genome Mapping, Tagging & Characterization: Swine - Odd The Function Analyses on pR236H and pD298N of MC4R Gene in the Pig

Lizhu Niu1, Xin Zhang1, Yaxiong Tao2, Xiaolei Liu1 and Bin Fan1, (1)Huazhong Agricultural University, Wuhan, China, (2)Auburn University, Auburn, AL

P0376: Genome Mapping, Tagging & Characterization: Swine - Even Identification of Functional Polymorphisms in the Coding Sequence of Swine Toll-like Receptors

Armand Sanchez, Center for Research in Agricultural Genomics, Universitat Autònoma de Barcelona, Bellaterra (Barcelona), Spain, Alex Clop, Centre for Research in Agricultural Genomics (CRAG), Cerdanyola del Valles, Spain, Abe Huisman, Hendrix-Genetics, Boxmeer, Netherlands and Pieter van As, Hendrix Genetics, Boxmeer, Netherlands P0377: Genome Mapping, Tagging & Characterization: Sheep - Odd Development of a SNP Parentage Assignment Panel for French Sheep Breeds

Flavie Tortereau, INRA, Castanet Tolosan Cedex, France, Carole R Moreno, INRA, Toulouse, France, Gwenola Tosser-Klopp, INRA, Castanet-Tolosan, France, Laetitia Barbotte, LABOGENA-DNA, Jouy en Josas Cedex, France, Lucie Genestout, LABOGENA DNA, Jouy-en-Josas, France and Jérôme Raoul, Institut de L'Elevage, Castanet Tolosan Cedex, France P0378: Genome Mapping, Tagging & Characterization: Sheep - Even Rumen Microbial Populations Associated with Feed Efficiency in Lambs Fed an Antibiotic Supplemented Forage Diet

Hannah C Cunningham1, Lyndi E Speiser1, Cara Clarkson1, Melinda J Ellison1, Kathleen J Austin1, Gavin Conant2, William R Lamberson2 and Kristi M Cammack1, (1)Department of Animal Science, University of Wyoming, Laramie, WY, (2)Division of Animal Sciences, University of Missouri, Columbia, MO

P0379: Genome Mapping, Tagging & Characterization: Sheep - Odd Detection of Lethal Mutations in Sheep: Research for Homozygous Chromosome Segments with High Density Molecular Information (54 000 SNPs)

Morgane L Petit1, Sébastien Fritz2, Jean-Michel Astruc3, Rachel Rupp4, Romain Saintilan5 and Carole R Moreno4, (1)INRA Toulouse, Toulouse, France, (2)UNCEIA Genetics Team, Paris, France, (3)Idele Toulouse, Toulouse, France, (4)INRA, Toulouse, France, (5)UNCEIA, Jouy-en-Josas, France P0380: Genome Mapping, Tagging & Characterization: Sheep - Even Rumen Microbiota Differences Associated with Diet and Feed Efficiency Status in Sheep

Melinda J Ellison1, Gavin Conant2, William R Lamberson2, Rebecca R Cockrum3, Kathleen J Austin1 and Kristi M Cammack1, (1)Department of Animal Science, University of Wyoming, Laramie, WY, (2)Division of Animal Sciences, University of Missouri, Columbia, MO, (3)Virginia Polytechnic Institute and State University, Blacksburg, VA P0381: Genome Mapping, Tagging & Characterization: Sheep - Odd Artiodactyl MYADM-like Repeat Region: BAC Sequence Identifies 7 Open Reading Frames with Differing Lengths Between Reference Genome and Alternate Allele

Michael V Gonzalez1, Michelle Mousel2, David R Herndon2, Brian Dalrymple3, James O Reynolds2, Christopher M Seabury4 and Stephen N White2, (1)Washington State University, Pullman, WA, (2)USDA ARS Animal Disease Research, Pullman, WA, (3)CSIRO Agriculture Flagship, St Lucia, Australia, (4)Texas A&M University, College Station, TX

P0382: Genome Mapping, Tagging & Characterization: Sheep - Even The Polycerate Trait in Jacob and Navajo-Churro Sheep may be Located on Ovine Chromosome 2

Tracy Hadfield1, Noelle Cockett1 and James Kijas2, (1)Utah State University, Logan, UT, (2)CSIRO Agriculture Flagship, St Lucia, Australia P0383: Genome Mapping, Tagging & Characterization: Sheep - Odd Comparison of Multi-Breed and Within-Breed Genomic Evaluation in French Dairy Goat

Céline Carillier1, Hélène Larroque2 and Christèle Robert-Granié2, (1)INRA UMR 1388 GenPhySE Toulouse, Castanet Tolosan, France, (2)INRA UM 1388, Castanet Tolosan cedex, France P0384: Genome Mapping, Tagging & Characterization: Sheep - Even Population Structure and Breed Relations of South African Indigenous Goat Ecotypes Using Genome-Wide SNP Data

Khanyisile Mdladla1, Edgar F Dzomba1, Heather J Huson2 and Farai C Muchadeyi3, (1)University of KwaZulu-Natal, Pietermartzburg, South Africa, (2)Cornell University, Ithaca, NY, (3)Agricultural Research Council, Pretoria, South Africa

234

P0385: Genome Mapping, Tagging & Characterization: Sheep - Odd Development and Implementation of a Simple KASP Genotyping Test for Identifying Tay-Sachs Disease Carriers in Jacobs Sheep

Christopher Lewis, Jacobs Sheep Society, Exeter, United Kingdom, J D Curry, LGC Ltd, Hoddesdon, United Kingdom, Timothy Cox, University of Cambridge, Department of Medicine, Cambridge, United Kingdom, Mark Wessels, Finn Pathologists, Norfolk, United Kingdom and Helen Carty, Ayr Disease Surveillance Centre, Ayr, United Kingdom P0386: Genome Mapping, Tagging & Characterization: Sheep - Even Deletion of the Entire CSN1S1 Gene Is Responsible for the Lack of Alpha S1-Casein in Goat (Capra hircus) Milk

Valentin Adrian Balteanu1, Alexandra Silvia Costin1 and Marcel Amills2, (1)University of Agricultural Sciences and Veterinary Medicine Cluj-Napoca, Romania, Cluj-Napoca, Romania, (2)Center for Research in Agricultural Genomics - University Autonomus of Barcelona, Bellaterra, Spain P0387: Genome Mapping, Tagging & Characterization: Canine and Feline - Odd Genetic Factors Associated with Lumbosacral Stenosis in Labrador Retrievers

Meenakshi Mukherjee, Jianbo Yao, Amy Welsh and Jeryl Jones, West Virginia University, Morgantown, WV

P0388: Genome Mapping, Tagging & Characterization: Canine and Feline - Even Using a Read-Based Approach to Estimate the Accumulation of Deleterious Variation in Domestic and Wild Canids from Low-Coverage Sequencing Data

Clare D Marsden1, Robert D Schnabel2, Gary S Johnson3, Robert K Wayne1 and Kirk E Lohmueller1, (1)University of California Los Angeles, Los Angeles, CA, (2)Division of Animal Sciences, University of Missouri, Columbia, MO, (3)Department of Vet Pathobiology, University of Missouri, Columbia, MO P0389: Genome Mapping, Tagging & Characterization: Canine and Feline - Odd 99 Lives Cat Whole Genome Sequencing Initiative Update

Leslie A Lyons, University of Missouri-Columbia, Columbia, MO P0390: Genome Mapping, Tagging & Characterization: Canine and Feline - Even The Genome of the Iberian Lynx

Tyler Alioto1, André Corvelo1, Fernando Cruz1, Leonor Frias1, Paolo Ribeca1, José Godoy2, Marta Gut1 and Ivo Gut1, (1)Centro Nacional de Análisis Genómico, Barcelona, Spain, (2)Estación Biológica de Doñana, CSIC, Sevilla, Spain

P0391: Genome Mapping, Tagging & Characterization: Canine and Feline - Odd Industrial-Scale Variant Analysis Enabling the 99 Lives Cat Genome Project

Holly C Beale, Dan Kearns, Todd M Lowe and Patricia P Chan, Maverix Biomics, San Mateo, CA P0392: Genome Mapping, Tagging & Characterization: Poultry - Even de novo Assembly of the Chinese Bamboo-Partridge Genome and Comparison with Chicken

Gabriel Rognon1, Diane Esquerré2, Sylvain Foissac1, Alain Vignal3, Jean Luc Coville4, Bertrand Bed'hom5, Michèle Tixier-Boichard6 and Thomas Faraut7, (1)INRA - GenPhySE, Castanet Tolosan, France, (2)INRA GeT-PlaGe Genomics Facility - GenPhySe, Castanet Tolosan cedex, France, (3)INRA Toulouse, Laboratoire de Génétique Cellulaire, Toulouse, France, (4)INRA, UMR de Génétique Animale et Biologie Intégrative, Jouy-en-Josas, France, (5)INRA, UMR GABI, Jouy-en-Josas CEDEX, France, (6)INRA, UMR GABI, Jouy-en-Josas, France, (7)INRA - GenPhySE, Castanet-Tolosan, France P0393: Genome Mapping, Tagging & Characterization: Poultry - Odd Building a de novo Chicken Genome Annotation with PacBio Transcriptome Sequencing

Richard Kuo, Roslin Institute, University of Edinburgh, Edinburgh, United Kingdom, Elizabeth Tseng, Pacific Biosciences, Menlo Park, CA, Alan L Archibald, The Roslin Institute and R(D)SVS, University of Edinburgh, Midlothian, United Kingdom and David W Burt, Roslin Institute Univ of Edinburgh, Edinburgh, United Kingdom

P0394: Genome Mapping, Tagging & Characterization: Poultry - Even Characterization of Transcriptome-associated SNPs in the Chicken

Modupeore Adetunji1, Susan J Lamont2, Chris Ashwell3, Max F Rothschild2, Michael Persia4 and Carl J Schmidt1, (1)University of Delaware, Newark, DE, (2)Iowa State University, Ames, IA, (3)North Carolina State University, Raleigh, NC, (4)Virginia Polytechnic and State University, Blacksburg, VA P0395: Genome Mapping, Tagging & Characterization: Poultry - Odd Whole Genome Shotgun Sequencing Metagenomics Analysis for the "Common" Scientist

John CF Hsieh, Muhammed Walugembe, Nick J Koszewski, Susan J Lamont, Michael E Persia and Max F Rothschild, Iowa State University, Ames, IA P0396: Genome Mapping, Tagging & Characterization: Poultry - Even A New Look at the LTR Retrotransposon Content of the Chicken Genome

Andrew S Mason, The Roslin Institute, Easter Bush, United Kingdom, Paul M Hocking, The Roslin Institute, The University of Edinburgh, Midlothian, United Kingdom and David W Burt, Roslin Institute Univ of Edinburgh, Edinburgh, United Kingdom P0397: Genome Mapping, Tagging & Characterization: Poultry - Odd Tissue-Specific Transcriptome Regulation through Histone Modifications in Chickens

Perot Saelao, UC Davis, DAVIS, CA and Huaijun Zhou, University of California, Davis, CA

235

P0398: Genome Mapping, Tagging & Characterization: Poultry - Even Genome Wide Genetic Variation Analysis of a Brown Leghorn Layer Chicken Line

Choon Kiat Khoo, The Roslin Institute & R(D)SVS, University of Edinburgh, Easter Bush, United Kingdom, Almas Gheyas, The Roslin Institute & R(D)SVS, University of Edinburgh, Edinburgh, United Kingdom, Richard Kuo, Roslin Institute, University of Edinburgh, Edinburgh, United Kingdom, Paul M Hocking, The Roslin Institute, The University of Edinburgh, Midlothian, United Kingdom and David W Burt, Roslin Institute Univ of Edinburgh, Edinburgh, United Kingdom P0399: Genome Mapping, Tagging & Characterization: Poultry - Odd Metagenomics Analysis of Broiler and Layer Chicks Cecal Content from High Fiber Diets

Muhammed Walugembe1, John CF Hsieh1, Nick J Koszewski1, Susan J Lamont1, Michael E Persia2 and Max F Rothschild1, (1)Iowa State University, Ames, IA, (2)Virginia Tech, Blacksburg, VA P0400: Genome Mapping, Tagging & Characterization: Poultry - Even Comparing the Liver from Modern Broilers and Ugandan Chicken

Sara F Jastrebski1, Carl J Schmidt1, Michael Persia2, Chris Ashwell3, Max F Rothschild4 and Susan J Lamont4, (1)University of Delaware, Newark, DE, (2)Virginia Polytechnic and State University, Blacksburg, VA, (3)North Carolina State University, Raleigh, NC, (4)Iowa State University, Ames, IA

P0401: Genome Mapping, Tagging & Characterization: Poultry - Odd Transcriptomic Analysis of Hypothalamic Responses in Modern and Legacy Chicken Lines

Lakshmi Praveena Kamineni1, Liang Sun1, Allen Hubbard1, Janet deMena1, Carl J Schmidt1, Susan J Lamont2, Max F Rothschild2, Michael E Persia3 and Chris Ashwell4, (1)University of Delaware, Newark, DE, (2)Iowa State University, Ames, IA, (3)Virginia Tech, Blacksburg, VA, (4)North Carolina State University, Raleigh, NC P0402: Genome Mapping, Tagging & Characterization: Poultry - Even Avian Dopamine Receptors DRD1a and DRD1b Arise from an Ancient Vertebrate Whole Genome Duplication

Asher K Haug-Baltzell1, Eric Lyons2, Fiona McCarthy1 and Erich Jarvis3, (1)University of Arizona, Tucson, AZ, (2)University of Arizona | iPlant Collaborative, Tuscon, AZ, (3)Duke University Medical Center, Durham, NC P0403: Genome Mapping, Tagging & Characterization: Poultry - Odd Novel SNPs in the OCX-32 Gene and Their Associations with Egg Production Traits in Korean Native Chickens

Sung-Jin Lee, Kangwon National University, Chuncheon, South Korea, So-Young Choi, Kangwon National Uinv Korea, Chuncheon, South Korea and Ji Yeon Lee, Kangwon National Uinv, Korea, Chuncheon, South Korea P0404: Genome Mapping, Tagging & Characterization: Poultry - Even Genome Wide Association Study for Sperm Mobility Phrnotype in Broiler Chickens

Sohita Ojha1, Douglas D Rhoads1 and David P Froman2, (1)University of Arkansas, Fayetteville, AR, (2)Oregon State University, Corvallis, OR

P0405: Genome Mapping, Tagging & Characterization: Poultry - Odd Sex-Specific Differential Gene Expression during Muscle Development in the Turkey

Helen A Sobczynski1, Kristelle M Mendoza1, Melissa S Monson1, Sungwon Kim2, Rami A Dalloul2 and Kent M Reed1, (1)University of Minnesota, St Paul, MN, (2)Virginia Tech University, Blacksburg, VA P0406: Genome Mapping, Tagging & Characterization: Poultry - Even A Complex Genomic Structural Variation on Gallus gallus Chromosome 27 Lead to Ectopic Gene Expression Which Caused Beard in Chicken

Xiaorong Gu1, Ying Guo1, Zheya Sheng1, Yanqiang Wang1, Chenglong Luo2, Hao Qu2, Dingming Shu2, Yiqiang Zhao1, Li Ning1 and Xiaoxiang Hu1, (1)China Agricultural University, Beijing, China, (2)Institute of Animal Science, Guangdong Academy of Agricultural Sciences, Guangzhou, China P0407: Genome Mapping, Tagging & Characterization: Poultry - Odd Expression Analysis of Chicken Pimordial Germ Cell Specific Genes in Male and Female Cultures

Nhung T Nguyen and Douglas D Rhoads, University of Arkansas, Fayetteville, AR P0408: Genome Mapping, Tagging & Characterization: Poultry - Even Comparison of Broiler Chicken Retina and Pineal Gland Transcriptome

Allison Rogers, Allen Hubbard, Liang Sun and Carl J Schmidt, University of Delaware, Newark, DE

P0409: Genome Mapping, Tagging & Characterization: Poultry - Odd Differential Gene Expression in the Hen Liver in Response to Different Feeding Conditions

Claire S Stephens and Patricia A Johnson, Cornell University, Ithaca, NY P0410: Genome Mapping, Tagging & Characterization: Poultry - Even Interrogation of Differentially Expressed Genes Governing Residual Feed Intake in Chickens Using RNA-Seq

Guoqiang Yi, Jingwei Yuan, Wei Yan and Ning Yang, China Agricultural University, Beijing, China P0411: Genome Mapping, Tagging & Characterization: Poultry - Odd RNA-Seq Based Genome-Wide Analysis of Genomic Imprinting in Chicken Lungs

Tae Hyun Kim1, Ying Wang1, Zhenhua Zhao1, Susan J Lamont2 and Huaijun Zhou1, (1)University of California, Davis, CA, (2)Iowa State University, Ames, IA P0412: Genome Mapping, Tagging & Characterization: Poultry - Even Promoter SNPs in the Serotonin Receptor Gene 5HT2B and Their Association with Ascites in Chicken

Khaloud Alzahrani, Douglas D Rhoads, Robert F Wideman and Nicholas B Anthony, University of Arkansas, Fayetteville, AR

236

P0413: Genome Mapping, Tagging & Characterization: Poultry - Odd Specialized Antigen Presentation by YF MHC Class I-Like Molecules in Poultry Health

Marcia M Miller, Ronald M Goto, Melissa Kaye Delgado and Michael Soekamto, Beckman Research Institute, City of Hope, Duarte, CA P0414: Genome Mapping, Tagging & Characterization: Poultry - Even Investigation of Single Nucleotide Polymorphisms for UTS2D and AGTR1 for Their Association with Ascites in Chickens

Shatovisha Dey, Robert F Wideman, Nicholas B Anthony and Douglas D Rhoads, University of Arkansas, Fayetteville, AR P0415: Genome Mapping, Tagging & Characterization: Poultry - Odd Marker Assisted Selection for Ascites Resistance in Broilers Using a Chromosome Z Locus

Katy Estill, Sriram Krishnamoorthy, Nicholas B Anthony and Douglas D Rhoads, University of Arkansas, Fayetteville, AR P0416: Genome Mapping, Tagging & Characterization: Poultry - Even Differential Transcriptome Analysis of CD4+ T Cells of Chickens Induced By Marek's Disease Virus Challenge

Yanghua He1, Huanmin Zhang2 and Jiuzhou Song1, (1)University of Maryland, College Park, MD, (2)USDA ARS Avian Disease & Oncology Laboratory, East Lansing, MI

P0417: Genome Mapping, Tagging & Characterization: Poultry - Odd Genome-Wide Assessment of Copy Number Variation in Two Chicken Lines with Different Susceptibility to Marek's Disease Using Next Generation Sequencing

Yiyuan Yan1, Ning Yang1, Hans Cheng2, Jiuzhou Song3 and Lujiang Qu1, (1)China Agricultural University, Beijing, China, (2)USDA, ARS, ADOL, East Lansing, MI, (3)University of Maryland, College Park, MD P0418: Genome Mapping, Tagging & Characterization: Poultry - Even RNA-Seq to Identify Genes Involved with Femoral Head Necrosis in Broilers

Ricardo Zanella1, Jane de Oliveira Peixoto2, Adriana Mércia Guaratini Ibelli2, Mauricio Cantao3, Matthew Settles4, Luiz Lehmann Coutinho5 and Monica Correa Ledur2, (1)CNPq/BJT at Embrapa Swine and Poultry, Concórdia, Brazil, (2)Embrapa Swine and Poultry, Concórdia, Santa Catarina, Brazil, (3)Embrapa Swine and Poultry, Concordia, Brazil, (4)University of Idaho, Moscow, ID, (5)ESALQ - USP, Piracicaba, SP, Brazil P0419: Genome Mapping, Tagging & Characterization: Poultry - Odd Viral/Host Gene Expression Profiles in Lymphoid and Feather Follicle Epithelial (FFE) Cells Infected with Marek’s Disease Virus (MDV) in Chicken

Deepali Vasoya, Roslin Institute, University of Edinburgh, Edinburgh, United Kingdom

P0420: Genome Mapping, Tagging & Characterization: Poultry - Even Chicken Nano-Defensin-9 Displays Potent Antimicrobial Activities Against Multidrug Resistant Bacteria and Fungi

Haitham Yacoub, King Abdulaziz University, jeddah, Saudi Arabia P0421: Genome Mapping, Tagging & Characterization: Poultry - Odd Genome-Wide Scan of Resistance to Necrotic Enteritis in Chickens

Yeong Ho Hong1, Eui-Soo Kim2, Boyeong Park1, Jihye Ban1 and Hyun S Lillehoj3, (1)Chung-Ang University, Anseong, South Korea, (2)Iowa State University, Ames, IA, (3)USDA-ARS, Beltsville, MD P0422: Genome Mapping, Tagging & Characterization: Poultry - Even Genetic and Genome Analyses of Bacteria Cultured from Lame Broilers with Osteomyelitis

Adnan Al-Rubaye, University of Arkansas, Fayetteville, AR P0423: Genome Mapping, Tagging & Characterization: Poultry - Odd Genome-Wide Association Study for Response to Eimeria maxima Challenge in Broilers

Edin Hamzic1, Bertrand Bed'hom2, Frédéric Hérault3, Hervé Juin4, Rachel J Hawken5, Mitchell S Abrahamsen5, Jean-Michel Elsen6, Bertrand Servin7 and Marie-Hélène Pinard-van der Laan8, (1)AgroParisTech / INRA, UMR1313 GABI, Jouy-en-Josas CEDEX, France, (2)INRA, UMR GABI, Jouy-en-Josas CEDEX, France, (3)INRA, UMR1348 PEGASE, Saint-Gilles, France, (4)INRA, UE1206 EASM, Surgères, France, (5)Cobb-Vantress, Siloam Springs, AR, (6)UMR 1388 GenPhySE, Castanet-Tolosan, France, (7)INRA, UMR1388 GenPhySe, Castanet-Tolosan, France, (8)INRA, UMR1313 GABI, Jouy-en-Josas CEDEX, France

P0424: Genome Mapping, Tagging & Characterization: Poultry - Even RNA-Seq Analysis of Wooden Breast Disease: Characterizing a Novel Myopathy in Commercial Chickens through Differential Gene Expression

Marie Mutryn1, Erin Brannick1, Weixuan Fu1, William Lee2 and Behnam Abasht1, (1)Department of Animal Science, University of Delaware, Newark, DE, (2)Maple Leaf Farms, Leesburg, IN P0425: Genome Mapping, Tagging & Characterization: Poultry - Odd Transcriptional Analysis of Resistance to Newcastle Disease Virus Infection in Two Genetically Distinct Inbred Chicken Line

Perot Saelao, UC Davis, DAVIS, CA, Ying Wang, University of California Davis, Davis, CA and Huaijun Zhou, University of California, Davis, CA P0426: Genome Mapping, Tagging & Characterization: Poultry - Even Morphometric and Transcriptome Analysis of Probiotic Treated Heat Stress Birds

Blair Kathleen Schneider1, Matheus Reis1, AP Garcia1, Chris Ashwell2, Michael Persia3, Max F Rothschild4, Susan J Lamont4 and Carl J Schmidt1, (1)University of Delaware, Newark, DE, (2)North Carolina State University, Raleigh, NC, (3)Virginia Polytechnic and State University, Blacksburg, VA, (4)Iowa State University, Ames, IA P0427: Genome Mapping, Tagging & Characterization: Poultry - Odd Transcriptome Analysis of Genetic Resistance to Heat Stress in Two Genetically Distinct Chicken Inbred Lines

Ying Wang, University of California Davis, Davis, CA

237

P0428: Genome Mapping, Tagging & Characterization: Poultry - Even Synbiotics-Regulated Gene Expression Signatures Determined in Vitro reflect the Molecular Background of the Treated Host Animal

Anna Slawinska1, Maria Siwek1, Arkadiusz Plowiec1, Aleksandra Dunislawska1, Marek Bednarczyk1 and Hans Bluyssen2, (1)University of Technology and Life Sciences, Bydgoszcz, Poland, (2)Adam Mickiewicz University, Poznan, Poland P0429: Genome Mapping, Tagging & Characterization: Poultry - Odd Text-Mining and Visualization Approach Help Interpret Experimental Data and Make Hypothesis

Pan Teng1, Liang Sun1, Allison Rogers1, Catalina Oana Tudor Tudor2, Cecilia Arighi3, Vijay Shanker1 and Carl J Schmidt1, (1)University of Delaware, Newark, DE, (2)Center Bioinformatics & Comp Bio – University of Delaware, Newark, DE, (3)CBCB – University of Delaware, Newark, DE P0430: Genome Mapping, Tagging & Characterization: Poultry - Even Using Random Forests to Identify Candidate Genes for Binary Trait in Poultry GWAS Datasets: The IMPACT of Correcting for Family Structures

Yutao Li1, Sigrid A Lehnert1, Andrew George2, Rachel J Hawken3 and Antonio Reverter1, (1)CSIRO Agriculture Flagship, Brisbane, Australia, (2)CSIRO Digital Productivity and Services Flagship, Brisbane, Australia, (3)Cobb-Vantress, Siloam Springs, AR

P0431: Genome Mapping, Tagging & Characterization: Insects - Odd de novo Transcriptome Assembly of the Parasitoid Wasp Fopius arisanus Using RNA-Seq

Bernarda Calla, ARS-USDA, Hilo, HI, Brian Hall, University of Hawaii -Manoa, Honolulu, HI, Sheina Sim, University of Hawaii-Manoa, Honolulu, HI, Eva Brill, University of Hawaii, Hilo, HI and Scott Geib, USDA-ARS, Hilo, HI P0432: Genome Mapping, Tagging & Characterization: Insects - Even Apollo + i5K: Collaborative Curation and Interactive Analysis of Genomes

Monica C Munoz-Torres1, Nathan A Dunn1, Monica Poelchau2, Colin Diesh3, Deepak Unni3, Ian Holmes4, Christine G Elsik5 and Suzanna Lewis1, (1)Lawrence Berkeley National Laboratory, Walnut Creek, CA, (2)USDA/Agricultural Resarch Service/National Agricultural Library, Beltsville, MD, (3)Division of Animal Sciences, University of Missouri, Columbia, MO, (4)Department of Bioengineering, Berkeley, CA, (5)University of Missouri, Columbia, MO P0433: Genome Mapping, Tagging & Characterization: Insects - Odd The Genome of Plutella xylostella (Diamondback Moth) Three Ways

Alistair C Darby1, Neil Hall1, Christiane Hertz-Fowler2, Rachel Brenchley1, Arjen Van 't Hof3, Thea Marubbi4, Luke Alphey4 and Neil Morrison4, (1)University of Liverpool, Liverpool, United Kingdom, (2)University of Liverpool, Liverpool, AB, United Kingdom, (3)Institute of Integrative Biology, Liverpool, United Kingdom, (4)Oxitec Ltd, United Kingdom

P0434: Genome Mapping, Tagging & Characterization: Insects - Even Use of Crowdsourcing Challenge to Develop RNAi Based Biological Control of the Citrus Greening Vector, Diaphornia citri

John Ramos1, Robert G Shatters Jr2, Charles A Powell3, Dov Borovsky2, Siddarame T Gowda4, William Dawson4 and Ritesh Jain3, (1)USDA/ARS, Fort Pierce, FL, (2)US Department of Agriculture, Fort Pierce, FL, (3)University of Florida, IFAS, Fort Pierce, FL, (4)University of Florida, CREC, Lake Alfred, FL P0435: Genome Mapping, Tagging & Characterization: Insects - Odd Gene Expression Changes in Response to Aging Compared to Stress Conditions in Drosophila melanogaster

Jie Shen, Hangzhou Dianzi University, Hangzhou City, China P0436: Genome Mapping, Tagging & Characterization: Insects - Even Reducing Biases in Small RNA-Sequencing

Dawn Obermoeller, Masoud Toloue and Adam Morris, Bioo Scientific, Austin, TX P0437: Genome Mapping, Tagging & Characterization: Insects - Odd Genome-Wide Long Intergenic Noncoding RNAs (lincRNAs) Profiling Reveals a Sub Set of lincRNAs Exhibiting Similar Response to Diverse Viral Diseases in Honey Bees

Murukarthick Jayakodi, Je Won Jung, Tae-Jin Yang and Hyung Wook Kwon, Seoul National University, Seoul, South Korea

P0438: Genome Mapping, Tagging & Characterization: Insects - Even Pattern of Sex Chromosome Dosage Compensation in Lepidoptera: Insights from a Fused Moth Z Chromosome

Liuqi Gu, Cornell University, GENEVA, NY P0439: Genome Mapping, Tagging & Characterization: Insects - Odd Double Digested RAD Sequencing Technique for SNP Identification on Africanized Apis mellifera Honeybee Populations

Samir M Kadri1, Diego P Alonso2, Paulo E Martins Ribolla3, Rodrigo Zaluski4, Amro Zayed5 and Ricardo O Orsi1, (1)University of Veterinary Medicine and Animal Sciences - UNESP, Botucatu, Brazil, (2)Department of Parasitology - IBB/UNESP, Botucatu, Brazil, (3)IBB - UNESP - Department of Parasitology, Botucatu, Brazil, (4)FMVZ-UNESP-Botucatu, Botucatu, Brazil, (5)York University, Toronto, ON, Canada P0440: Genome Mapping, Tagging & Characterization: Insects - Even Draft Genome of the Globally Widespread Whitefly Bemisia tabaci

Wenbo Chen, Boyce thompson institute for plant research, Ithaca, NY, Daniel K Hasegawa, Cornell University, Charleston, SC, Alvin M Simmons, USDA-ARS, Charleston, SC, Kathiravetpilla Arumuganathan, Benaroya Research Institute at Virginia Mason, Seattle, WA, William M Wintermantel, USDA-ARS, Salinas, CA, Kai-Shu Ling, USDA-ARS, Charleston,, SC and Zhangjun Fei, Cornell University, Ithaca, NY

238

P0441: Genome Mapping, Tagging & Characterization: Insects - Odd Genomic Insights on the Recent Evolution of Novel Host Use in the Melissa Blue Butterfly (Lycaeides melissa)

Samridhi Chaturvedi, Department of Biology, Utah State University, Logan, UT P0442: Genome Mapping, Tagging & Characterization: Other Animal Species - Even Comparative Study Between Three Egyptian and Two Spanish Local Rabbit Breeds By Using Mitochondrial DNA

Ahmed Mostafa Emam, Animal Production Research Institute, Dokkii, Egypt P0443: Genome Mapping, Tagging & Characterization: Other Animal Species - Odd RGB-Net, a Collaborative European Network on Rabbit Genome Biology: Taking out the Rabbit from a Dark Burrow

Luca Fontanesi, Department of Agricultural and Food Sciences, University of Bologna, Bologna, Italy, Hervé Garreau, INRA, Castanet Tolosan Cedex, France, Zsuzsanna Bosze, Agricultural Biotechnology Institute, Gödöllõ, Hungary, Ino Curik, Department of Animal Science, University of Zagreb, Zagreb, Croatia, Miriam Piles, IRTA, Caldes de Montbuí, Spain, Claire Rogel-Gaillard, INRA - UMR1313, Jouy en Josas, France and Carl-Gustaf Thulin, Department of Wildlife, Fish, and Environmental Studies, Swedish University of Agricultural Scienses, Umeå, Sweden

P0444: Genome Mapping, Tagging & Characterization: Other Animal Species - Even Determining cDNA Sequences for Targeted Axolotl Salamander Genes Using Assembled RNA-Seq Reads

Parvathy Thampi1, Jinpeng Liu2, Zheng Zeng3 and James N MacLeod1, (1)Department of Veterinary Science, University of Kentucky, Lexington, KY, (2)Markey Cancer Center, University of Kentucky, Lexington, KY, (3)Memorial Sloan Kettering Cancer Center, New York, NY P0445: Genome Mapping, Tagging & Characterization: Other Animal Species - Odd Diversity and Evolution of Transposable Elements Across Four Anolis Lizard Genomes

Marc Tollis1, Catherine May1, Elizabeth D Hutchins1, Walter L Eckalbar2 and Kenro Kusumi1, (1)Arizona State University, Tempe, AZ, (2)University of California San Fransisco, San Fransisco, CA P0446: Genome Mapping, Tagging & Characterization: Other Animal Species - Even Characterization of a Large Vertebrate Genome Using Shotgun and Laser Capture Chromosome Sequencing - Salamander

Melissa Keinath1, Panagiotis A Tsonis2, Vladimir Timoshevskiy1, S Randal Voss1 and Jeramiah J Smith1, (1)University of Kentucky, Lexington, KY, (2)University of Dayton, Dayton, OH

P0447: Genome Mapping, Tagging & Characterization: Other Animal Species - Odd Ecological Transcriptomics in Salamandra salamandra and S infraimmaculata, a Test Case for Applying Non-Lethal Sampling Techniques

Till Czypionka1, Antonina Polevikov2, Janine Altmueller3, Ori Segev2, Sebastian Steinfartz4, Alan Tempelton2, Leon Blaustein2, Tamar Krugman2 and Arne Nolte1, (1)Department of Evolutionary Genetics, Plön, Germany, (2)Institute of Evolution and Department of Evolutionary and Environmental Biology, Haifa, Israel, (3)Cologne Centre for Genomics, Köln, Germany, (4)Department of Evolutionary Biology, Unit Molecular Ecology, Braunschweig, Germany P0448: Genome Mapping, Tagging & Characterization: Other Animal Species - Even Genome Annotation of the Genetic Model, Xenopus laevis, Enriched for the Developing Central Nervous System

John A Cornelius1, Kendall Van Keuren-Jensen2, Lin-Chien Huang3, Amanda Courtright2, Ivana Malenica2, Hollis Cline3 and Kenro Kusumi1, (1)Arizona State University, Tempe, AZ, (2)Translational Genomics Research Institiute, Phoenix, AZ, (3)The Scripps Research Institute, La Jolla, CA P0449: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Odd Comparative Genome Analysis of Clavibacter michiganensis Subsp michiganensis strains Provides Insights into Genetic Diversity and Virulence

Shree P Thapa, UC Davis, Davis, CA

P0450: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Even Complete Genome Sequence and Comparative Genomic Analyses of Staphylococcus aureus FORC_001, a Food-Borne Pathogens

Sooyeon Lim1, Heebal Kim1, Sang-Ho Choi2, Sangryeol Ryu1 and Ju-Hoon Lee3, (1)Seoul National University, Seoul, South Korea, (2)Seoul National University, seoul, South Korea, (3)Kyung Hee University, Yongin, South Korea P0451: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Odd Molecular Identification of Virulence Markers of E coli

Onizan Godian Zogibi, King Abdulaziz University, Jeddah, Saudi Arabia P0452: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Even Molecular Characterization of Salmonella Enterica Recovered from Major Food of Animal Origin Collected from Saudi Arabia

Abdullah Abdelaziz Alarfaj, King Saud University, College of Science, Riyadh, Saudi Arabia P0453: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Odd Molecular and Serotyping Characterization of Shiga Toxogenic Escherichia coli Associated with Food Collected from Saudi Arabia

Ihab Mohamed Moussa, King Saud University, Riyadh, Saudi Arabia

239

P0454: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Even The Genome and Transcriptome of the Zoonotic Hookworm Ancylostoma ceylanicum Reveal Infection-Specific Gene Families

Erich M Schwarz1, Yan Hu2, Igor Antoshechkin3, Melanie M Miller4, Paul W Sternberg3 and Raffi V Aroian2, (1)Cornell University, Ithaca, NY, (2)University of Massachusetts Medical School, Worcester, MA, (3)California Institute of Technology, Pasadena, CA, (4)University of California San Diego, La Jolla, CA P0455: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Odd Genetic Diversity and Mating-Type Locus Characterization in Pyrenophora semeniperda

Julie L Henry1, Craig E Coleman1 and Susan E Meyer2, (1)Brigham Young University, Provo, UT, (2)USDA Shrub Sciences Laboratory, Provo, UT P0456: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Even Molecular Mechanisms of Cercospora Pathogenicity Revealed through Comparative Genomics

Alex Z Zaccaron1, John B Ridenour1, Jonathon E Smith1, Nicholas L Lawson1, Sandeep Sharma Khatiwada1, Marcio L Zaccaron1, Ahmad M Fakhoury2 and Burt H Bluhm1, (1)University of Arkansas, Fayetteville, AR, (2)Southern Illinois University, Carbondale, IL

P0457: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Odd Fungal Phytotoxins and Ascochyta Blights of Cool Season Legumes

Wonyong Kim1, Tobin Peever1, George J Vandemark2 and Weidong Chen2, (1)Washington State University, Pullman, WA, (2)USDA-ARS Washington State University, Pullman, WA P0458: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Even Population Characterization of Brazilian Isolates of Ceratocystis spp Using Microsatellites

Edson Furtado1, Ana Firmino1, Michael Mbenoun2, Denise Nosaki1, Ariska Van der Nest3, Jolanda Roux3, Irene Bernes3 and Mike Wingfield3, (1)University of São Paulo State, Botucatu, Brazil, (2)uuniversity of Pretoria, Pretoria, South Africa, (3)university of Pretoria, Pretoria, South Africa P0459: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Odd Influence of Different Next-Generation Plataforms on GC-Bias - Corynebacterium pseudotuberculosis

Kenny C Pinheiro1, Adonney A Oliveira Veras1, Pablo H C Gomes de Sá1, Maria P C Schneider1, Vasco Azevedo2, Artur Luiz Costa Silva1 and Rommel T J Ramos1, (1)Universidade Federal do Pará, Belém, Brazil, (2)Universidade Federal de Minas Gerais, Belo Horizonte, Brazil

P0460: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Even Genome Sequence and Architecture of the Tobacco Downy Mildew Pathogen, Peronospora tabacina

Lida Derevnina1, Sebastian Reyes Chin-Wo2, Frank Martin3, Kelsey Wood2, Lutz Froenicke2, Otmar Spring4 and Richard Michelmore2, (1)UC Davis Genome Center, Davis, CA, (2)Genome Center, University of California, Davis, CA, (3)USDA ARS, Salinas, CA, (4)University of Hohenheim, Stuttgart, Germany P0461: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Odd Bacterial Community Profiling in Rhizoctonia Soils

Patricia Okubara1, Timothy Paulitz2, Chuntao Yin3, Aaron Mahoney3, Nicholas Arthur Mueth3 and Scot Hulbert3, (1)USDA ARS, Pullman, WA, (2)USDA ARS, Pullan, WA, (3)Washington State University, Pullman, WA P0462: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Even Molecular Insights into the Rotylenchulus reniformis Transcriptome

Kurt Showmaker1, William S Sanders1, Mark A Arick II2, Zenaida V Magbanua2, Daniel G Peterson2 and Martin Wubben3, (1)Mississippi State University, MS State, MS, (2)Mississippi State University, Mississippi State, MS, (3)USDA, ARS, Mississippi State, MS

P0463: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Odd Identification and Diferentiation of Verticillium Species with PCR Markers and Sequencing of ITS Region

Taja Jesenicnik1, Natasa Stajner1, Jernej Jakse1, Sebastjan Radisek2 and Branka Javornik1, (1)University of Ljubljana, Biotechnical Faculty, Agronomy Department, Ljubljana, Slovenia, (2)Slovenian Institute for Hop Research and Brewing, Plant Protection Department, %alec, Slovenia P0464: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Even Putative Genes Identified on Two Growth Conditions of Ganoderma boninense

Jayanthi Nagappan, Malaysian Palm Oil Board, Kajang, Selangor, Malaysia P0465: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Odd Draft Genome Assembly and Comparative Genomic Analysis of the Plant-Parasitic Nematode Rotylenchulus reniformis

William S Sanders1, Kurt Showmaker1, Satish Ganji1, Mark A Arick II2, Zenaida Magbanua3, Martin Wubben4, Daniel G Peterson5 and Jennifer P Arnold2, (1)Mississippi State University, MS State, MS, (2)Institute for Genomics, Biocomputing, and Biotechnology - Mississippi State University, MS State, MS, (3)Department of Plant and Soil Sciences - Mississippi State University, MS State, MS, (4)USDA, ARS, Mississippi State, MS, (5)Mississippi State University, Mississippi State, MS

240

P0466: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Even PacBio Sequencing and Genome Annotation of Sporisorium scitamineum

Lucas M Taniguti1, Patricia DC Shaker1, Juliana Benevenuto1, Leila P Peters1, Giselle de Carvalho1, Alessandra Palhares1, João Paulo Kitajima2 and Claudia B Monteiro-Vitorello1, (1)University of São Paulo, Piracicaba, Brazil, (2)Mendelics Análise Genômica, São Paulo, Brazil P0467: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Odd Characterization of Stripe Rust Isolates from Western Canada Using NGS

André Laroche, Michele Frick, Byron Puchalski, Eric Amundsen, Brent Puchalski, Harpinder Randhawa, Robert Graf and Denis Gaudet, Agriculture and Agri-Food Canada, Lethbridge, AB, Canada P0468: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Even Mitochondrial Genome Evolution in Species Causing Ascochyta Blight in Pulses - Ascochyta and Peyronellaea Species

Wing Yee Liu, Chala J Turo, Angela H Williams and Judith Lichtenzveig, Curtin University, WA, Australia

P0469: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Odd Using Bioinformatics Tools to Study the Genomic Diversity of the Plant Pathogen Leptosphaeria maculans in Australia

Dhwani Apurva Patel1, Manuel Matias Zander1, Agnieszka Golicz2, Paula Martinez3, Angela Van de Wouw4, Sarah Lorberg1, Satomi Hayashi1, David Edwards1 and Jacqueline Batley1, (1)University of Queensland, Brisbane, Australia, (2)Australian Centre for Plant Functional Genomics, Brisbane, Australia, (3)Australian Centre for Plant Functional Genomics, University of Queensland, Brisbane, Australia, (4)School of Botany, Melbourne, Australia P0470: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Even Using Genotyping-By-Sequencing to Study the Population Genomics of the Plant Pathogen Fusarium graminearum

Christopher Toomajian, Wei Yue and John F Leslie, Kansas State University, Manhattan, KS P0471: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Odd Phylogenetic Relationships of Escherichia coli Isolates Associated with Bovine Fecal and Milk Samples

Mohamed Ismail AlHazmi, King Saud University, Department of food Science, College of Food Science, Riyadh, Saudi Arabia, Hassan A Hemeg Hemeg, Department of Medical Technology/Microbiology, College of Applied Sciences,, Madinah, Saudi Arabia, Saudi Arabia and Ihab Mohamed Moussa, King Saud University, Riyadh, Saudi Arabia

P0472: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Even Mining of a Plant Pathogen Genome to Identify Candidate WY-Domain Containing Pathogenicity Proteins

Kelsey Wood, Juliana Gil, Lida Derevnina, Joan Wong and Richard Michelmore, Genome Center, University of California, Davis, CA P0473: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Odd Genomic Characterization of Plant-Selected Microsymbionts in the Fabeae Legume Tribe: The Pangenome of Rhizobium leguminosarum bv viciae

Beatriz Jorrín, Universidad Politecnica de Madrid, Pozuelo de Alarcon, Spain and Juan Imperial, Universidad Politecnica de Madrid and CSIC, Pozuelo de Alarcon, Spain P0474: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Even Mapping and Characterization of Pyrenophora teres f maculata Virulence Provides Needed Information for Breeding Durable Spot Form Net Blotch Resistance

Steven A Carlsen1, Jonathan Richards1, Anjan Neupane1, Robert S Brueggeman1 and Timothy L Friesen2, (1)Department of Plant Pathology, North Dakota State University, Fargo, ND, (2)USDA-ARS, Fargo, ND

P0475: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Odd Ancient DNA Analysis of 5,000 Year Old Wheat and Barley Seeds from Armenia Reveal Insights into Fungal Pathogens and Wine-Making Culture in the Late Chalcolithic

James M Breen1, Mark T Rabanus-Wallace1, Boris Gasparyan2, Ron Pinhasi3, Michael J Wilkinson1 and Alan Cooper1, (1)University of Adelaide, Adelaide, Australia, (2)National Academy of Sciences of Armenia, Yerevan, Armenia, (3)University College Dublin, Dublin, Ireland P0476: Other Category - Even Comparative Analysis of Transcriptomes Connected with Sex Expression in Cucumber

Magdalena Pawelkowicz, Michal Krzysztof Wojcieszek, Pawe& Osipowski, Wojciech Plader and Zbigniew Przybecki, Department of Plant Genetics, Breeding and Biotechnology, Warsaw University of Life Sciences - SGGW, Warsaw, Poland P0477: Other Category - Odd Competence Center for Doubled Haploid Research

Thomas Lubberstedt, Iowa State University, Ames, IA and Martin Bohn, University of Illinois, Urbana, IL, Urbana, IL P0478: Other Category - Even Life Sciences Cyberinfrastructure at Your Fingertips: Using Internet2 to Power Scientific Collaboration

Daniel B Taylor, Internet2, Washington, DC

241

P0479: Other Category - Odd A Genome Wide Epigenetic Study of Hexaploid Wheat

Laura Gardiner, Mark Quinton-Tulloch, Lisa Olohan, Jonathan Price, Neil Hall and Anthony Hall, University of Liverpool, Liverpool, United Kingdom P0480: Other Category - Even Training Students in Analyzing Big Data : A Case of Plant Stress Response

Irina Makarevitch, Natalia Wiatros and Cameo Frechette, Hamline University, Saint Paul, MN P0481: Other Category - Odd Bringing Authentic Genomics Research into the Classroom: Analysis of Maize Stress Response

Irina Makarevitch, Hamline University, Saint Paul, MN P0482: Other Category - Even Plant Breeding Graduate Education in Africa Via an Innovative e-Learning Partnership

Anthony Assibi Mahama, Iowa State University, Ames, IA P0483: Other Category - Odd A Modular Framework for Teaching Sequencing Based Functional Genomics to High School Students

Rabi Murad, UC Irvine, Irvine, CA

P0484: Genome Mapping, Tagging & Characterization: Rice - Even Resequencing of Rice Coreset Deciphers the Milestones for Breeding and Population Structures of Korean Rice

Tae-Sung Kim1, Qiang He1, ByoungKook Yun2, Min-Young Yoon1, Xiao-Qiang Wang1, Feng-Peng Li1, Aye Aye Khaing1, Rayhanul Kabir Khandakar MD1, Won-Hee Ra1, Win Htet Oo1, Cheol Soon Park1, Sun-Kyung Min1, Wei Tong1, Jie Yu1, Bu-Woong Choi1, Eun-Beom Heo1, Yoo-Hyun Cho3, Young-Sang Lee4, Kyu-Won Kim1, Chang-Yong Lee2 and Yong-Jin Park1, (1)Kongju National University, Chungnam, South Korea, (2)Kongju National University, Gongju-si, South Korea, (3)Seedpia, Suwon, South Korea, (4)Soonchunhyang University, Chungnam, South Korea P0485: Genome Mapping, Tagging & Characterization: Rice - Odd The Rice Genome at Ten: Helping to Solve the 9-Billion People Question

Baltazar Antonio, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan, Takashi Matsumoto, National Institute of Agrobiological Sciences, Tsukuba, Japan and Takuji Sasaki, Tokyo University of Agriculture, Tokyo, Japan P0486: Genome Mapping, Tagging & Characterization: Rice - Even Draft Genome Sequences of Newly Distinguished Wild Rice Populations from Australia

Marta Brozynska1, Agnelo Furtado1 and Robert Henry2, (1)Queensland Alliance for Agriculture and Food Innovation, Brisbane, Australia, (2)University of Queensland QAAFI, Brisbane, Australia

P0487: Genome Mapping, Tagging & Characterization: Rice - Odd Rapid Full-Length IsoSeq cDNA Sequencing of Rice mRNA to Facilitate Annotation and Identify Splice-Site Variation

Rod A Wing, University of Arizona, Arizona Genomics Institute, Tucson, AZ P0488: Genome Mapping, Tagging & Characterization: Rice - Even A Chromosome Segment Substitution Library of US Weedy Rice for Genetic Dissection of Complex Agronomic and Domestication Traits

Prasanta K Subudhi1, Teresa DeLeon1, Pradeep Singh2, Arnold Parco1 and Marc A Cohn1, (1)Louisiana State University Agricultural Center, Baton Rouge, LA, (2)Indian Agricultural Research Institute, New Delhi, India P0489: Genome Mapping, Tagging & Characterization: Rice - Odd High-Throughput SNP Genotyping for Crop Improvement

Michael J Thomson1, Maria Ymber V Reveche1, Christine Jade Dilla-Ermita1, Nadia Vieira Castañeda1, Geraldine Ann V Malitic-Layaoen1, Geisha Shaina Lyn B Sanchez1, Maria S Dwiyanti1, Venice Margarette Juanillas1, Ramil P Mauleon1, Joong Hyoun Chin1, Bertrand Collard1, Susan McCouch2 and Eero Nissila1, (1)International Rice Research Institute, Metro Manila, Philippines, (2)Cornell University, Ithaca, NY

P0490: Genome Mapping, Tagging & Characterization: Rice - Even Construction of Six Oryza sativa x O rufipogon Chromosome Segment Substitution Line (CSSL) Libraries

Ehsan Shakiba1, Georgia C Eizenga2, Namrata Singh3, M Liakat Ali4, HyunJung Kim3, Genevieve DeClerck3, Mark Wright3, Sang-Nag Ahn5 and Susan McCouch3, (1)University of Arkansas, Rice Research and Extension Center, Stuttgart, AR, (2)USDA-ARS Dale Bumpers National Rice Research Center, Stuttgart, AR, (3)Cornell University, Ithaca, NY, (4)University of Nebraska, Dep of Agronomy and Horticulture, Lincoln, NE, (5)Dept of Agronomy, Chungnam National University, Daejeon, South Korea P0491: Genome Mapping, Tagging & Characterization: Rice - Odd Oryzabase: Enhancing the Search Functionality with Genes and Image Gallery

Kyohei Matsuno, Mika Nagahora, Gaku Kimura, Rie Tsuchiya and Yukiko Yamazaki, National Institute of Genetics, Mishima, Japan P0492: Genome Mapping, Tagging & Characterization: Rice - Even Consideration of O Rufipogon Diversity with a SNP Database

Hajime Ohyanagi1, Toshinobu Ebata2, Xuehui Huang3, Hong Gong3, Masahiro Fujita1, Atsushi Toyoda4, Asao Fujiyama4, Zi-Xuan Wang3, Bin Han3, Yukiko Yamazaki5 and Nori Kurata1, (1)Plant Genetics Laboratory, National Institute of Genetics, Mishima, Japan, (2)DYNACOM Co,Ltd, Chiba, Japan, (3)National Center for Gene Research,SIBS,CAS, Shanghai, China, (4)Comparative Genomics laboratory, NIG, ROIS, Shizuoka, Japan, (5)National Institute of Genetics, Mishima, Japan

242

P0493: Genome Mapping, Tagging & Characterization: Rice - Odd KitBase: A Fully Indexed Rice Genomic Resource Using 4,000 Kitaake Based Mutant Population

Rashmi Jain, UC-Davis, Davis, CA P0494: Genome Mapping, Tagging & Characterization: Rice - Even Development of Diagnostic DNA Markers for Prediction of Cooked Rice Taste in Indica Rice

Yunjoo Lee1, Puji Lestari2 and Hee-Jong Koh1, (1)Seoul National University, Seoul, South Korea, (2)Indonesian Center for Agricultural Biotechnology and Genetic Resources Research and Development, Bogor, Indonesia P0495: Genome Mapping, Tagging & Characterization: Rice - Odd Optimization of Seed Germinability for Direct Seeding By Stacking QTLs in Rice

Takuya Yamaguchi1, Yukihide Iyama1, Kazuhiko Sugimoto2, Motoyasu Omoteno3, Kenji Fujita1, Kazumasa Murata1 and Takeshi Ebitani1, (1)Toyama Prefectural Agricultural, Forestry & Fisheries Research Center, Toyama, Japan, (2)National Institute of Agrobiological Sciences, Tsukuba, Japan, (3)Ministry of Agriculture, Forestry and Fisheries, Chiyoda-ku, Japan

P0496: Genome Mapping, Tagging & Characterization: Rice - Even Genome-Wide Indel Markers in Diverse Asian Rice Cultivars: Comparison Among Japanese Rice Cultivars, and Potential Application of the Promising Indel Markers

Sun Hee Choi1, Hiroaki Sakai1, Jianzhong Wu1, Tsuyu Ando1, Ayahiko Shomura1, Masahiro Yano2, Shuichi Fukuoka1 and Jun-ichi Yonemaru1, (1)National Institute of Agrobiological Sciences, Tsukuba, Japan, (2)NARO Institute of Crop Science (NICS), Tsukuba, Japan P0497: Genome Mapping, Tagging & Characterization: Rice - Odd Research to Dramatically Improve Rice Leaf Photosynthesis with Marker Assisted Selection

Shunsuke Adachi1, Takayuki Ochiai2, Risako Ao2, Toshiyuki Takai3, Motohiko Kondo3, Toshio Yamamoto4 and Tadashi Hirasawa5, (1)NARO Institute of Crop Science, JST PRESTO, Tsukuba, Japan, (2)Graduate School of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Japan, (3)NARO Institute of Crop Science, Tsukuba, Japan, (4)National Institute of Agrobiological Science, Tsukuba, Japan, (5)Tokyo University of Agriculture and Technology, Fuchu, Japan P0498: Genome Mapping, Tagging & Characterization: Rice - Even Genome-Wide Analysis of microRNAs Associated with Flower Development in Rice

Dong-Hoon Jeong, Hallym University, Chuncheon, South Korea

P0499: Genome Mapping, Tagging & Characterization: Rice - Odd Some Genes in a NAC Transcription Factor Family Play Cooperated Roles in the Developmental Process of Rice Plant

Shoshi Kikuchi, National Inst Agrobiological Sciences, Tsukuba, Japan P0500: Genome Mapping, Tagging & Characterization: Rice - Even The Role of OsELF3-1 in Flowering-Time Control Has Differentiated During Evolution of Rice

Hironori Itoh, Yuri Tanaka and Takeshi Izawa, National Institute of Agrobiological Sciences, Tsukuba, Japan P0501: Genome Mapping, Tagging & Characterization: Rice - Odd Time-Series Analysis of RNA Profiles During Rice Endosperm Development

Teh-yang Hwa1, Li-yu Daisy Liu1, Meng-ying Lin1, Yong-pei Wu2 and Yann-rong Lin1, (1)Department of Agronomy, National Taiwan University, Taipei, Taiwan, (2)Chiayi Agricultural Experiment Station, Taiwan Agricultural Research Institute, Chiayi, Taiwan P0502: Genome Mapping, Tagging & Characterization: Rice - Even Mapping of Main and Epistatic QTLs and QTL by Environment Interaction for Rice Grain Yield and Yield Components Under Well Watered and Drought Stress Conditions

Hamid Dehgani, Tarbiat Modares University, Tehran, Iran, Mehdi Rahimi, Institute of Science and High Technology and Environmental Sciences, Kerman, Iran, Babak Rabiei, University of Guilan, Rasht, Iran and Ali R Tarang, Agricultural Biotechnology Research Institute of North of Iran, Rasht, Iran

P0503: Genome Mapping, Tagging & Characterization: Rice - Odd Natural Variations in Sdr1 Improve Resistance to Preharvest Sprouting Through Involvement of Mitogen-Activated Protein Kinase Kinase Kinase in Rice

Yoshinobu Takeuchi1, Kazuhiko Sugimoto2, Utako Yamanouchi2 and Masahiro Yano1, (1)NARO Institute of Crop Science, Tsukuba, Japan, (2)National Institute of Agrobiological Sciences, Tsukuba, Japan P0504: Genome Mapping, Tagging & Characterization: Rice - Even Deformation of Root Cortex Cells during Rice Lateral Root Emergence: Examination of Cell Wall Remodeling during Development

Laura Bartley, University of Oklahoma, Norman, OK and Timothy Pegg, Univestiy of Oklahoma, Norman, OK P0505: Genome Mapping, Tagging & Characterization: Rice - Odd Expression Analysis of High Zinc Rice Breeding Lines Using Known Homeostasis Genes Involved in Iron and Zinc Acquisition and Translocation

Prabhjit Chadha-Mohanty1, Jessica D Rey1, Perigio B Francisco1, Parminder S Virk2, Md Alamgir Hossain1 and Mallikarjuna Swamy1, (1)International Rice Research Institute, Makati City, Philippines, (2)International Center for Tropical Agriculture, Hyderabad, India P0506: Genome Mapping, Tagging & Characterization: Rice - Even Inheritance of the Photoperiod Thermo-Sensitive Genetic Male Sterility in Rice and Evaluation of SNP-Based Markers in Two-Gene Recessive Model

Christian De Guzman, Louisiana State University Agricultural Center, Baton Rouge, LA

243

P0507: Genome Mapping, Tagging & Characterization: Rice - Odd QTL for Rice Heat Tolerance in Different Genetic Backgrounds

Edilberto D Redoña, Mississippi State University, Stoneville, MS and Changrong Ye, International Rice Research Institute, Manila, Philippines P0508: Genome Mapping, Tagging & Characterization: Rice - Even Identification, Characterization and Validation of Salt Tolerance Determinants in Rice (Oryza sativa L) Landrace Horkuch and Its Segregating Population

Taslima Haque1, Samsad Razaque1, Sabrina Moriom Elias2, Md Sazzadur Rahman3, Sudip Biswas1, Sumaiya Farah Khan1, Thomas Jeunger4, Harkamal Walia5, Abdelbagi M Ismail6 and Zeba Islam Seraj1, (1)University of Dhaka, Dhaka, Bangladesh, (2)University of Nebraska Lincoln, Austin, TX, (3)Bangladesh Rice Research Institute, Dhaka, Bangladesh, (4)University of Texas at Austin, Austin, TX, (5)Univeristy of Nebraska-Lincoln, Lincoln, NE, (6)International Rice Research Institute, Manila, Philippines P0509: Genome Mapping, Tagging & Characterization: Rice - Odd Mapping for the Quantitative Trait Loci (QTL) for Tolerance of Anaerobic Germination in Rice (Oryza sativa L) Using SNP Genotyping

Miriam D Baltazar1, Juan Carlos I Ignacio2, Michael J Thomson2, Abdelbagi M Ismail2, Endang M Septiningsih2 and Merlyn S Mendioro3, (1)Cavite State University, Cavite, Philippines, (2)International Rice Research Institute, Manila, Philippines, (3)University of the Philippines Los Ba'os, Los Ba'os, Philippines

P0510: Genome Mapping, Tagging & Characterization: Rice - Even Genome Wide Association Study (GWAS) and Identification of Novel Rice Blast Resistance Genes

Feng-Peng Li1, Won-Hee Ra1, Kyu-Won Kim1, Tae-Sung Kim1, Yong-Jin Park1 and Il-Pyung Ahn2, (1)Kongju National University, Yesan, South Korea, (2)Rural Development Administration, Jeonju, South Korea P0511: Genome Mapping, Tagging & Characterization: Rice - Odd Insights into the Rice Responsive Transcriptome Against Twelve Abiotic Stress and Plant Hormone Treatments

Yoshihiro Kawahara1, Youko Oono1, Hiroyuki Kanamori1, Hironobu Wakimoto2, Takashi Matsumoto1 and Takeshi Itoh1, (1)National Institute of Agrobiological Sciences, Tsukuba, Japan, (2)BITS Co, Ltd, Tokyo, Japan P0512: Genome Mapping, Tagging & Characterization: Rice - Even Development of Disease Resistant Rice Using Whole Genome Sequencing and Standard Breeding Methods

Yamid Sanabria1, James Oard1 and Don Groth2, (1)Louisiana State University Agricultural Center, Baton Rouge, LA, (2)Rice Research Station, Louisiana State University, Rayne, LA P0513: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Assembling Maize Inbred CML247: The Maize Pan-Genome Takes Off

Fei Lu1, Robert Bukowski1, Qi Sun1 and Edward S Buckler1,2, (1)Institute for Genomic Diversity, Cornell University, Ithaca, NY, (2)USDA-ARS-Cornell University, Ithaca, NY

P0514: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Genome Wide Assessment of Maize Genebank Diversity; Synthesis of Next Generation Technologies and GIS Based Approaches

Sarah Hearne1, Jorge Franco2, Jiafa Chen1, Carolina Paola Sansaloni1, Cesar Daniel Petroli3, Andrzej Kilian4 and Kai Sonder1, (1)CIMMYT - International Maize and Wheat Improvement Centre, El Batan, Mexico, (2)Facultad de Agronomia, UDELAR, Paysandu, Uruguay, (3)CIMMYT, Tepatitlán de Morelos, Jalisco, Mexico, (4)Diversity Arrays Technology Pty Ltd, Yarralumla, Australia P0515: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Genome Wide Association Study for Nine Plant Architecture Traits in Sorghum bicolor

Jing Zhao, Iowa State University, AMES, IA P0516: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Identification and Development of Data Standards for Maize Field Phenotypic Measurements: Working with the GxE Subgroup of the Genomes2Fields Initiative

Genomes to Fields Consortium1, Jack Gardiner2, Darwin Capmbell3 and Carolyn J Lawrence3, (1)University of Wisconsin-Madison, Madison, WI, (2)Plant Genomics Outreach Consortium, Tucson, AZ, (3)Iowa State University, Ames, IA 50011, IA

P0517: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Integrating Hyperspectral Reflectance Spectroscopy into the Field Phenotyping Toolkit - A Case Study in Maize Subjected to Elevated [Ozone] in the US Mid-West

Craig Yendrek1, Tiago Tomaz1, Christopher Montes1, Gorka Erice1, Lorena Rios-Acosta1, Patrick J Brown1, Andrew DB Leakey1 and Elizabeth A Ainsworth2, (1)University of Illinois at Urbana-Champaign, Urbana, IL, (2)USDA ARS, Urbana, IL P0518: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Leaf-Level Hyperspectral Reflectance As a Tool for Measuring Photosynthetic Capacity in C4 Grasses

Rachel E Paul, University of Illinois, Urbana, IL, Darshi Banan, University of Illinois Urbana Champaign, Urbana, IL, Shawn P Serbin, Brookhaven National Laboratory, Upton, NY, Max J Feldman, Donald Danforth Center Plant Science Center, Creve Coeur, MO, Ivan Baxter, USDA-ARS, Danforth Plant Science Center, St Louis, MO and Andrew DB Leakey, University of Illinois at Urbana-Champaign, Urbana, IL P0519: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd de novo Assembly of a Complex Panicoid Grass Genome Using Ultra-Long PacBio Reads with P6C4 Chemistry

Robert VanBuren1, Todd C Mockler2, Jenny Gu3, Todd P Michael4, Richard Hall3 and Kristi Spittle Kim5, (1)Danforth Plant Science Center, St Louis, MO, (2)Donald Danforth Plant Science Center, Saint Louis, MO, (3)Pacific Biosciences, Menlo Park, CA, (4)IBIS Biosciences, Carlsbad, CA, (5)Pacific Biosciences, Menlo park, CA

244

P0520: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even The Teosinte (Zea mays ssp parviglumis) de novo Genome Assembly

Arun S Seetharam1, Zhihong Lang2, Zachary Lemmon3, Andrew J Severin1, John Doebley4, Jinsheng Lai5 and Matthew B Hufford1, (1)Iowa State University, Ames, IA, (2)School of Life Science and Engineering, Southwest University of Science and Technology, Mianyang, China, Biotechnology Research Institute/The National Key Facility for Crop Gene Resources and Genetic Improvement,, Beijing, China, (3)Genetics Department, University of Wisconsin, Madison, WI, (4)University of Wisconsin, Madison, WI, (5)State Key Lab of Agrobiotechnology, China Agricultural University, Beijing, China P0521: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd China Golden Marker (Beijing) Biotech Co, Ltd - A Pioneer in High-Throughput Genotyping Service in China

Runchun Jing, China Golden Marker (Beijing) Biotech Co, Ltd, Beijing, China and Hong Lu, China Golden Marker Biotechnology Co Ltd, Beijing, China P0522: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Discovery and Mapping of Presence-Absence Variants (PAV) in the Founders of the Maize NAM Population

Alina Ott1, Cheng-Ting Yeh2, Wei Wu2, Jeffrey A Jeddeloh3, Sam Benidt1, Dan Nettleton1 and Patrick S Schnable2, (1)Iowa State University, Ames, IA, (2)Department of Agronomy, Iowa State University, Ames, IA, (3)Roche NimbleGen, Madison, WI

P0523: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd A Single Nucleotide Insertion in a FatB Gene Is Responsible for Reducing Saturated Fatty Acids in Maize Seed Oil

Peizhong Zheng1, Md A Babar2, Sai Parthasarathy1, Ryan Gibson1, Kelly Parliament1, Josh Flook1, Thomas Patterson1, Peter D Friedemann1, Siva Kumpatla1 and Steve Thompson1, (1)Dow AgroSciences, Indianapolis, IN, (2)Univsersity of Florida, Gainesville, FL P0524: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Development and Characterization of Simple Sequence Repeat Markers Providing Genome-Wide Coverage and High Resolution in Maize

Ling Liu, Sichuan Agricultural University, wenjiang, China

P0525: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Epigenetic Characteristics and Gene Expression Analysis of a de novo Centromere in Maize

Handong Su1, Yalin Liu2, Yong-Xin Liu3, Zhenling Lv4, Hongyao Li5, Shaojun Xie5, Zhi Gao6, Junling Pang7, Xiu-Jie Wang8, Jinsheng Lai9, Fangpu Han4 and James A Birchler10, (1)Institute of Genetics and Developmental Biology, Beijing, China, (2)Institute of Genetics and Developmental Biology, Beijing, China, (3)Institute of Genetics and Developmental biology, BeiJing, China, (4)Chinese Academy of Sciences, Beijing, China, (5)University of Chinese Academy of Sciences, Beijing, China, (6)University of Missouri-Columbia, Columbia, MO, (7)institute of genetics and developmental biology, beijing, China, (8)Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, beijing, China, (9)State Key Lab of Agrobiotechnology, China Agricultural University, Beijing, China, (10)University of Missouri, Columbia, MO P0526: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Transcriptome Analysis of Maize Inbred Lines Reveals Important Shifts in Gene Expression Between Parents, Hybrids, and Isonuclear Lines

Ovidiu Balacescu1, Loredana Balacescu1, Ioan Has2, Voichita Has2, Dana Suteu3, Remy Bruggmann4 and Mihai Miclaus4, (1)The Oncology Institute "Prof Dr Ion Chiricuta", Cluj-Napoca, Romania, (2)Agricultural Research and Development Station, Turda, Romania, (3)National R&D Institute for Biological Sciences, Cluj-Napoca, Romania, (4)University of Bern, Bern, Switzerland

P0527: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Development of S1 Inbred Lines and Estimating the Inbreeding Depression in Two Populations of Maize (Zea mays L)

Zia Ullah1, Mukhtar Alam1, Hidayat Ullah1 and Wasif U Khan2, (1)The University of Swabi, Swabi, Pakistan, (2)The University of Agriculture, Peshawar, Pakistan P0528: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Recombination in Maize is Stable, Predictable, and Associated with Genetic Load: A Study of the US and Chinese Maize NAM Populations

Eli Rodgers-Melnick, Cornell University, Ithaca, NY, Peter Bradbury, Cornell University/USDA-ARS, Ithaca, NY and Edward S Buckler, Institute for Genomic Diversity, Cornell University, Ithaca, NY P0529: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Patterns of Demography and Selection During and Since Maize Domestication

Timothy Beissinger1, Li Wang2, Matthew Hufford2 and Jeffrey Ross-Ibarra1, (1)University of California, Davis, CA, (2)Iowa State University, Ames, IA P0530: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Genomewide Predictions for Backcrossing a Quantitative Trait from an Exotic to an Adapted Line

Rex Bernardo, University of Minnesota, St Paul, MN

245

P0531: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Inference of Maize Population History during Migration to Highland Habitats

Li Wang1, Timothy Beissinger2, Jeffrey Ross-Ibarra2 and Matthew Hufford1, (1)Iowa State University, Ames, IA, (2)University of California, Davis, CA P0532: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Marker Assisted Breeding to Improve Grain Yield and Drought Tolerance in Tropical Maize

Yoseph Beyene Aydagn1, Kassa Semagn1, José Crossa2, Stephen Mugo3, Gary Atlin4, Amsal Tarekegne3, Barbara Meisel3, Pierre Sehabiague3, Bindiganavile S Vivek3, Sylvester Oikeh3, Gregorio Alvarado5, Gregorio Machida5, Michael S Olsen1, Boddupalli M Prasanna2 and Marianne Banziger5, (1)CIMMYT, Nairobi, Kenya, (2)CIMMYT - International Maize and Wheat Improvement Centre, Mexico, (3)CIMMIT, Nairobi, Kenya, (4)Bill & Melinda Gates Foundation, Seattle, WA, (5)CiMMIT, Nairobi, Kenya P0533: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Genome Evolution and GC Patterns Driven By Recombination in Zea mays

Anitha Sundararajan1, Stefanie Dukowic-Schulze2, Thiruvarangan Ramaraj1, Oliver Oveido1, Nathan Garcia1, Kayla Engstrom1, Madeline Kwicklis1, Changbin Chen2 and Joann Mudge3, (1)National Center for Genome Resources, Santa Fe, NM, (2)University of Minnesota, St Paul, MN, (3)National Center for Genome Resources (NCGR), Santa Fe, NM

P0534: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even The Small RNA Landscape of Maize Meiosis

Stefanie Dukowic-Schulze1, Anitha Sundararajan2, Joann Mudge3, Wojtek Pawlowski4 and Changbin Chen1, (1)University of Minnesota, St Paul, MN, (2)National Center for Genome Resources, Santa Fe, NM, (3)National Center for Genome Resources (NCGR), Santa Fe, NM, (4)Cornell University, Ithaca, NY P0535: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Assessing Nitrogen Metabolism Using Genome-Scale Models in Maize

Margaret Simons1, Rajib Saha2, Nardjis Amiour3, Akhil Kumar1, Lena(g Guillard3, Gilles Clément3, Martine Miquel3, Zhenni Li3, Grégory Mouille3, Peter J Lea4, Bertrand Hirel3 and Costas D Maranas1, (1)The Pennsylvania State University, University Park, PA, (2)Washington University in St Louis, St Louis, MO, (3)Institut Jean-Pierre Bourgin, Institut National de la Recherche Agronomique, Versailles, France, (4)Lancaster University, Lancaster, United Kingdom P0536: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Comparative Study of White Grain Candidate Maize (Zea mays L) Hybrids

Saima S Ghani1, Hidayat Ullah1, Mukhtar Alam1, David A Lightfoot2, Muhammad Y Khan3 and Muhammad Iqbal3, (1)The University of Swabi, Swabi, Pakistan, (2)Southern Illinois University, Carbondale, IL, (3)Cereal Crops Research Institute, Nowshera, Pakistan

P0537: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Phenotyping Maize for Drought and Low Nitrogen Tolerance in South Africa

Kingstone Mashingaidze and Siphiwokuhle Shandu, Agricultural Research Council, Potchefstroom, South Africa P0538: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Sites of Sensitivity to Oxidative Stress from Ozone Exposure in Diverse Maize Inbred Lines

Elizabeth A Ainsworth1, Patrick J Brown2, Andrew DB Leakey2, Lauren M McIntyre3, Ilse Barrios-Perez2, Brad Dalsing4, Gorka Erice2, Courtney Leisner2, Christopher Montes2, Alison Morse3, Lorena Rios-Acosta2, Sang-In Shim5, Crystal A Sorgini2, Tiago Tomaz2 and Craig Yendrek2, (1)USDA-ARS, Urbana, IL, (2)University of Illinois at Urbana-Champaign, Urbana, IL, (3)University of Florida, Gainesville, FL, (4)University of Illinois Urbana-Champaign, Urbana, IL, (5)Gyeongsang National University, Jinju City, South Korea P0539: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Analysis of Genome-Wide Association Data to Identify Candidate Metabolic Pathways for Aflatoxin Accumulation Resistance in Maize

Juliet Tang, Marilyn Warburton and Paul Williams, USDA ARS Corn Host Plant Resistance Research Unit, Mississippi State, MS

P0540: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Maize Exhibits Differential Expression and Allelic Regulatory Variation in Response to Abiotic Stress

Amanda Waters1, Irina Makarevitch2, Candice Hirsch1, Cory D Hirsch1 and Nathan M Springer1, (1)University of Minnesota, Saint Paul, MN, (2)Hamline University, Saint Paul, MN P0541: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Discovery of Potential Molecular Markers for Northern Corn Leaf Blight in Maize

Lebogang Angelo Madubanya1, Kingstone Mashingaidze2 and Maryke Craven2, (1)Agricultural Research Council, Potchefstroom, South Africa, (2)Agricultural Research Council-Grain Crops Institute, Potchefstroom, South Africa P0542: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Genetic Architecture of Resistance to Maize Lethal Necrosis and Maize Streak Virus in Tropical Germplasm

Manje Gowda, CIMMYT (International Maize and Wheat Improvement Center), Nairobi, Kenya

246

P0543: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Saccharum Spontaneum Gene Catalog

Karina Yanagui1, Leandro Costa Nascimento1, Eduardo L O Camargo1, Marcelo Falsarella Carazzolle1, José Antonio Bressiani2 and Gonçalo Amarante Guimarães Pereira1, (1)Genomics and Expression Laboratory - State University of Campinas - UNICAMP, Campinas, Brazil, (2)Graal Bioenergy, Campinas - SP, Brazil P0544: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Maize Gene Expression Profiling Reveals Susceptible Response Genes during Grey Leaf Spot Fungus Cercospora zeina Infection

Yao-Cheng Lin, VIB Department of Plant Systems Biology, Ghent University, Ghent, Belgium, Maryke Carstens, University of Pretoria, Pretoria, South Africa, Yves Van de Peer, VIB Ghent University, Ghent, Belgium and Dave K Berger, University of Pretoria, Dept Plant Sciences, Pretoria, South Africa P0545: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Genotypic Evaluation and Selection of Newly Developed Sugarcane Advanced Clones for Determination of High Cane Yield, Yield Components and Quality Parameters

Sajid Ali1, Hidayat Ullah1, Mukhtar Alam1, Wasif U Khan2 and Mohammad Sajjad3, (1)The University of Swabi, Swabi, Pakistan, (2)The University of Agriculture, Peshawar, Pakistan, (3)Sugar Research Crops Institute, Mardan, Pakistan

P0546: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Metabolic Engineering of Sugarcane for the Production of Oil

Je Hyeong Jung1, Janice Zale1, Jae Yoon Kim1, Bhuvan Pathak1, Baskaran Kannan1, Ratna Karan1, Hui Liu2, Jason Candreva2, Zhiyang Zhai2, John Shanklin2 and Fredy Altpeter1, (1)University of Florida - IFAS, Gainesville, FL, (2)Brookhaven National Lab, Upton, NY P0547: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Screening for Species-Specific AFLP Markers in the Saccharum Complex

Luciana R Pinto1, Maria NG Melloni2, Bruna FT Pereira3, João R Manechini3, Luciana Carlini-Garcia4, Mauro A Xavier5 and Marcos G A Landell6, (1)Centro de Cana, Instituto Agronômico, Ribeirão Preto, SP, Brazil, (2)UNESP, Jaboticabal, Jaboticabal, Brazil, (3)Centro de Cana - IAC, Ribeirão Preto, Brazil, (4)Centro de Cana IAC, Ribeirão Preto, Brazil, (5)Instituto Agronomico - Centro de Cana, Ribeirão Preto, Brazil, (6)Centro de Cana - Instituto Agronômico, Ribeirão Preto, Brazil P0548: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Single Nucleotide Polymorphism (SNP) Discovery in the Large and Complex Saccharum Spp Genomes through Exome Sequencing

Jian Song, Xiping Yang and Jianping Wang, Agronomy Department, University of Florida, Gainesville, FL

P0549: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Analysis of Allelic Variation of Sugarcane Drought-Induced Genes

Sávio S Ferreira, Biochemistry Department - University of São Paulo, São Paulo, Brazil, Pablo Andrade, Institute of Chemistry - University of São Paulo, Sao Paulo, Brazil and Glaucia M Souza, Institute of Chemistry - University of São Paulo, São Paulo, Brazil P0550: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Identifying Marker-Trait Associations for Fiber Components in Sugarcane with Simple Sequence Repeat Markers

Karine Kettener1, Natalia Spagnol Stabellini2, Marcia Moreno2, Itaraju Brum2, Francisco Claudio da Conceicao Lopes2, Thiago Benatti3, Alessandro Pellegrineschi4, Karine M Oliveira5, Jorge A Da Silva6 and Celso Luis Marino7, (1)University of São Paulo State-UNESP, Botucatu, TX, Brazil, (2)CTC, Piracicaba, Brazil, (3)CTC - Centro de Tecnologia Canavieira, Piracicaba, Brazil, (4)CTC Sugarcane Technology Center, Piracicaba, Brazil, (5)CTC Sugarcane Technology Center, Piracicaba, SP, Brazil, (6)Texas A&M University, Weslaco, TX, (7)UNESP, Botucatu, SP, Sao Paulo, Brazil P0551: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Endophytic Bacteria Gluconacetobacter diazotrophicus Regulates Nitrogen Uptake in Sugarcane Roots

Layanne B Souza, Gabriela F Juliano, Joni E Lima and Antonio Figueira, University of Sao Paulo, Piracicaba, Brazil

P0552: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Exploiting and Dissecting the Genetics of Bioenergy Sorghums

Elizabeth A Cooper1, Zach Brenton1, Brad Rauh1, Richard Boyles1, Matt Myers1, Kelsey Zielinski1, Geoffrey Morris2 and Stephen Kresovich1, (1)Clemson University, Clemson, SC, (2)Kansas State University, Manhattan, KS P0553: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd A High-Density SNP Genotyping Array for Genome-Based Breeding of Energy Sorghum for Central Europe

Wubishet Abebe Bekele1, Silke Wieckhorst2, Monika Kloiber-Maitz2, Torben Schulz-Streeck3, Carsten Knaak3, Milena Ouzunova2, Alessandro Davassi4 and Rod Snowdon5, (1)Justus-Liebig University Giessen, Department of Plant Breeding, Giessen, Germany, (2)KWS SAAT AG, Einbeck, Germany, (3)KWS SAAT AG, Einbeck,, Germany, (4)Affymetrix UK Ltd, High Wycombe, United Kingdom, (5)Justus Liebig University, Giessen, Germany P0554: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Nested Association Mapping of Agroclimatic Traits in Sorghum

Olalere Marcus Olatoye1, Sophie Bouchet2 and Geoffrey Morris1, (1)Kansas State University, Manhattan, KS, (2)KSU, manhattan, KS

247

P0555: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Potential of Multiseeded Mutant (msd) to Boost Sorghum Grain Yield

Zhanguo Xin1, Yinping Jiao2, Gloria Burow3, Doreen Ware4, John Burke3 and Chad Hayes3, (1)USDA ARS, Lubbock, TX, (2)Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, (3)USDA-ARS, Lubbock, TX, (4)Cold Spring Harbor Laboratory/USDA-ARS, Cold Spring Harbor, NY P0556: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even QTL Mapping of Biomass Related Traits in Sweet Sorghum

Kanokwan Teingtham1, John Rajewski1, Niegel D La Borde1, Aaron Lorenz2, Kent Eskridge1, David M Braun3 and Ismail Dweikat1, (1)University of Nebraska-Lincoln, Lincoln, NE, (2)University of Nebraska–Lincoln, Lincoln, NE, (3)University of Missouri, Columbia, MO P0557: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Evaluation of Stay-Green QTL Combinations in Improved Sorghum Germplasm to Enhance Terminal Drought Tolerance

Priyanka S Gaikwad, International Crop Research Institute for Semi-Arid Tropics (ICRISAT), Hyderabad, India, Shivaji Mehtre, VN Marathwada Krishi Vidyapeeth, Parbhani, India, Vincent Vadez, ICRISAT, Patancheru, India, CT Hash, ICRISAT, Niamey, Niger and Santosh Deshpande, ICRISAT, Hyderabad, India

P0558: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Mapping Staygreen QTLs for Post-Flowering Drought Tolerance in Postrainy Sorghum

Santosh Deshpande, ICRISAT, Hyderabad, India, Vincent Vadez, ICRISAT, Patancheru, India, CT Hash, ICRISAT, Niamey, Niger and Andrew H Paterson, Plant Genome Mapping Laboratory, University of Georgia, Athens, GA P0559: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Dissecting the Genetic Basis of Height in Sorghum Using Biparental QTL Mapping

Josie L Hilley, Daryl Morishige, Ryan F McCormick, Sandra Truong, William L Rooney and John Mullet, Texas A&M University, College Station, TX P0560: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even The Genetic Basis of Grain Yield in Sorghum

Ashley Jean Mattison, Brock D Weers and John Mullet, Texas A&M University, College Station, TX

P0561: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Natural Variation in Synthesis and Catabolism Genes Influences Dhurrin Content in Sorghum (Sorghum bicolor L Moench)

Chad Hayes1, Gloria Burow1, Patrick J Brown2, Zhanguo Xin1, Carrie S Thurber3 and John Burke1, (1)USDA-ARS, Lubbock, TX, (2)University of Illinois at Urbana-Champaign, Urbana, IL, (3)University of Illinois at Urbana-Champaign, urbana, IL P0562: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Fine Genetic Mapping of Combined Shoot Fly Resistance (SFR) and Stay Green (STG) Traits on Sorghum Chromosome SBI-10

K N S Usha Kiranmayee1, Hari Sharma2, P B Kavi Kishor3, Ramu Punna4, Sivasubramani Selvanayagam5, Rajendra Munghate1, Sandeep A Sakhale1, CT Hash6 and Santosh Deshpande1, (1)ICRISAT, HYDERABAD, India, (2)ICRISAT, Hyderabad, India, (3)Osmania University, Hyderababd, India, (4)Institute for Genomic Diversity, Cornell University, Ithaca, NY, (5)ICRISAT, Hyderababd, India, (6)ICRISAT, Niamey, Niger P0563: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Genomic Analysis of a Sorghum NAM Population and High Resolution Mapping of Flowering Time

Sophie Bouchet1, MO Olalere1, SR Maria1, B Wempe1, R Perumal1, Tesfaye T Tesso1, Mitch Tuinstra2, Jianming Yu1 and Geoffrey Morris1, (1)Kansas State University, Manhattan, KS, (2)Purdue University, West Lafayette, IN

P0564: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Elucidation of the Genetic Components Influencing Cold Tolerance in Sorghum bicolor

Niegel D La Borde, University of Nebraska-Lincoln, Lincoln, NE P0565: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Genome-Wide Analysis of NBS-LRR-Encoding Genes in Sorghum and Comparative Sequence Analysis of NBS-LRR-Encoding Genes in Grass Species

Xiping Yang and Jianping Wang, Agronomy Department, University of Florida, Gainesville, FL P0566: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Genome-Wide Association Analysis for Fe and Zn Concentration in Sorghum Grains Identifies the Potential Candidate Genes for Sorghum Biofortification

Kotla Anuradha1, Ramu Punna2, Trushar Shah3, BhanuPrakash Amindala3, Sivasubramani Selvanayagam4, Abhishek Rathore3, CT Hash5, Stefania Grando3, AshokKumar A3 and Santosh Deshpande6, (1)International Crops Research Institute for the Semi-Arid-Tropics, Hyderabad, India, (2)Institute for Genomic Diversity, Cornell University, Ithaca, NY, (3)ICRISAT, Hyderabad, India, (4)ICRISAT, Hyderababd, India, (5)ICRISAT, Niamey, Niger, (6)ICRISAT, Hyderabad, India

248

P0567: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Mapping QTLs Associated with Grain Iron and Zinc in Sorghum (Sorghum bicolor L Moench)

Rahul M Phuke1, Kotla Anuradha2, Kanwar Sahrawat3, Farzana Jabeen4, Radhika Kommineni4, AshokKumar A3 and Santosh Deshpande5, (1)International Crop Research Institute for Semi-Arid Tropics (ICRISAT), Hyderabad, India, (2)International Crops Research Institute for the Semi-Arid-Tropics, Hyderabad, India, (3)ICRISAT, Hyderabad, India, (4)ANGRAU, Hyderabad, India, (5)ICRISAT, Hyderabad, India P0568: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even NGS Assisted Genome Wide Discovery of Polymorphisms Among Landraces of Foxtail Millet (Setaria italica L)

Akila Chandra Sekhar1, Palakurthi Ramesh1, K V N Rathnakar Reddi2, Chandra Obul Reddy Puli1, Lachagari V B Reddy3, Gurulakshmi Kola1, Pandit Varakumar1, B Jayanna Naik1, CVC Mohan Reddy4 and Arjula R Reddy5, (1)Yogi Vemana University, Kadapa, India, (2)Acharya Nagarjuna University, Guntur, India, (3)SciGenom Labs Pvt Ltd,, Kochi, India, (4)RARS, Nandyal, India, (5)University of Hyderabad, Hyderabad, India

P0569: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Rapid Hemispherical Photographic Phenotyping of Productivity and Canopy Dynamics in a Setaria RIL Population

Darshi Banan1, Mark Holmes1, Hannah Schlake1, Rachel E Paul2, Max J Feldman3, Ivan Baxter4 and Andrew DB Leakey5, (1)University of Illinois Urbana Champaign, Urbana, IL, (2)University of Illinois at Urbana-Champaign, Urbana, IL, (3)Donald Danforth Center Plant Science Center, Creve Coeur, MO, (4)USDA-ARS, Danforth Plant Science Center, St Louis, MO, (5)University of Illinois, Urbana, IL P0570: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Sequence-Enabled Genetics in Setaria viridis: A Model System for the Grasses

Hui Jiang1, Pu Huang1, Jeremy Schmutz2, Kerrie W Barry3, Anna Lipzen3, Xiaoping Li1 and Thomas P Brutnell1, (1)Donald Danforth Plant Science Center, St Louis, MO, (2)HudsonAlpha Institute for Biotechnology, Huntsville, AL, (3)DOE Joint Genome Institute, Walnut Creek, CA P0571: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd The International Wheat Genome Sequencing Consortium (IWGSC)

Kellye Eversole, IWGSC, Bethesda, MD and The International Wheat Genome Sequencing Consortium, IWGSC, Lee's Summit, MO

P0572: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Towards a Functional Durum Wheat Genome Assembly

Assaf Distelfeld1, Raz Avni1, Moran Nave1, Inbal Hamerman1, Kobi Baruch2 and Omer Barad2, (1)Faculty of Life Sciences - Tel Aviv University, Tel Aviv, Israel, (2)NRGENE LTD, Ness-Ziona, Israel P0573: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Combining Field Phenotyping and Next Generation Genetics to Uncover Markers, Genes and Biology Underlying Drought Tolerance in Wheat

Anthony Hall, University of Liverpool, Liverpool, United Kingdom P0574: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Construction of Whole-Genome BioNano Maps for Aegilops tauschii, the D Genome Progenitor of Wheat

Tingting Zhu, Karin R Deal, Armond Murray, Sonny Van and Ming-Cheng Luo, Department of Plant Sciences, University of California, Davis, CA

P0575: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd A High-Density, SNP-Based Consensus Map of Tetraploid Wheat (Triticum turgidum L) Useful for Durum and Bread Wheat Genomics and Breeding

Marco Maccaferri1, Andrea Ricci2, Silvio Salvi1, Sara G Milner1, Enrico Noli2, Pierluigi Martelli3, Rita Casadio4, Eduard Akhunov5, Simone Scalabrin6, Vera Vendramin7, Karim Ammar8, Antonio Blanco9, Francesca Desiderio10, Assaf Distelfeld11, Jorge Dubcovsky12, Tzion Fahima13, Justin D Faris14, Abraham B Korol15, Andrea Massi16, Anna-Maria Mastrangelo17, Michele Morgante18, Curtis Pozniak19, Amidou N'Diaye19, Steven S Xu14 and Roberto Tuberosa1, (1)DipSA - University of Bologna, Bologna, Italy, (2)DipSA-University of Bologna, Bologna, Italy, (3)Biocomputing Group-University of Bologna, Bologna, Italy, (4)Biocomputing Group, University of Bologna, Bologna, Italy, (5)Kansas State University, Manhattan, KS, (6)IGA Technology Services, Udine, Italy, (7)Istituto di Genomica Applicata, Udine, Italy, (8)CIMMYT, Mexico, DF, Mexico, (9)University of Bari, Bari, Italy, (10)CRA Genomics Research Centre, Fiorenzuola d'Arda, Italy, (11)Faculty of Life Sciences - Tel Aviv University, Tel Aviv, Israel, (12)University of California Davis, Davis, CA, (13)University of Haifa, Haifa, Israel, (14)USDA-ARS, Fargo, ND, (15)Institute of Evolution, University of Haifa, Haifa, Israel, (16)Società Produttori Sementi Bologna, Argelato, Italy, (17)Consiglio per la Ricerca e sperimentazione in Agricoltura-Cereal Research Centre, Foggia, Italy, (18)Università di Udine, Udine, Italy, (19)University of Saskatchewan, Saskatoon, SK, Canada

249

P0576: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Generating a Reference Sequence for Aegilops tauschii: First-Pass Annotation of Chromosomes 1D, 2D and 3D

Hao Wang1, Thomas Wicker2, Matthias Pfeifer3, Klaus F X Mayer3, Jeffrey L Bennetzen4 and Katrien M Devos1, (1)Institute of Plant Breeding, Genetics and Genomics, and Dept of Plant Biology, University of Georgia, Athens, GA, (2)Institute of Plant Biology, University of Zurich, Zurich, Switzerland, (3)Plant Genome and Systems Biology, Helmholtz Center Munich, Neuherberg, Germany, (4)Department of Genetics, University of Georgia, Athens, GA P0577: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Assembly Strategy for the BAC Pool Sequencing of Aegilops tauschii, the Ancestor of the Wheat D Genome

Daniela Puiu1, Geo Pertea1, Karin R Deal2, Yong Q Gu3, Naxin Huo2, Jan Dvorak2 and Steven L Salzberg1, (1)Johns Hopkins University, School of Medicine, Baltimore, MD, (2)Department of Plant Sciences, University of California, Davis, CA, (3)USDA ARS, Western Regional Research Center, Albany, CA P0578: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even DHPLC Technology As a High-Throughput Detection of Mutations in a Durum Wheat Tilling Population

Pasqualina Colasuonno1, Ornella Incerti1, Maria Luisa Lozito1, Marco Sbalzarini2, Stavros Papadimitriou2, Paolo Zaccagna2, Antonio Blanco1 and Agata Gadaleta1, (1)University of Bari, Bari, Italy, (2)Transgenomic, Misano Di Gera D'Adda (BG), Italy

P0579: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd A First Consensus Genetic Map of Intermediate Wheatgrass (Thinopyrum intermedium) has Broad Implications for Wheat Improvement and the Contemporary Domestication of a Perennial Cereal Crop

Traci R Kantarski, University of Chicago, Chicago, IL P0580: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Superscaffolding of Bread Wheat Survey Sequence Assemblies

David J F Konkin1, Chu Shin Koh1, Carling Clarke1, Curtis J Pozniak2 and Andrew G Sharpe1, (1)National Research Council of Canada, Saskatoon, SK, Canada, (2)University of Saskatchewan, Saskatoon, SK, Canada P0581: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Single Cell Genomic Sequencing in Wheat: Application in Monitoring Recombination Frequency

Sateesh Kagale, Pankaj Bhowmik, Patricia L Polowick, Alison MR Ferrie and Andrew G Sharpe, National Research Council Canada, Saskatoon, SK, Canada

P0582: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Unveiling the Genomes of Wild Wheat Relatives: Dissecting the S, U, M and C Genomes of Aegilops into Complete Sets of Separate Chromosomes

István Molnár1, Jan Vrana2, Veronika Bure#ová3, Petr Cápal3, Farkas András1, Marta Molnar-Lang1 and Jaroslav Dolezel2, (1)Agricultural Institute, Centre for Agricultural Research, Hungarian Academy of Sciences,, Martonvásár, Hungary, (2)Institute of Experimental Botany, Olomouc, Czech Republic, (3)Institute of Experimental Botany, Centre of the Region Hana for Biotechnological and Agricultural Research, Olomouc, Czech Republic P0583: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Complete Chloroplast DNA Sequences of Zanduri Wheat

Mari Z Gogniashvili, Agricultural University of Georgia, Tbilisi, Georgia P0584: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Searching for Ancestral Chromosomes Fusions in Triticeae: In Case Study on Hexaploid Bread Wheat

Arnaud Bellec1, Florent Murat2, Caroline Pont2, Hélène Bergès1 and Jerome Salse2, (1)INRA - CNRGV, Castanet Tolosan, France, (2)INRA Clermont-Ferrand, Clermont-Ferrand, France

P0585: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd A Dense Durum Wheat " T dicoccum Linkage Map Based on SNP Markers for the Study of Seed Morphology, and Identification of Candidate Genes

Anna-Maria Mastrangelo1, Maria Anna Russo1, Donatella Bianca Maria Ficco1, Giovanni Laidò1, Daniela Marone1, Antonio Blanco2, Agata Gadaleta2, Pina Ferragonio1, Valentina Giovanniello3 and Pasquale De Vita1, (1)Consiglio per la Ricerca e sperimentazione in Agricoltura-Cereal Research Centre, Foggia, Italy, (2)Department of Soil, Plant and Food Sciences, Section of Genetic and Plant Breeding, University of Bari “Aldo Moro”, Bari, Italy, (3)COSEME srl, Foggia, Italy P0586: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Macrosynthenic Relationships Between the U-, M-, S- and C-Genome Chromosomes of Aegilops and Wheat As Revealed By COS Markers

Farkas András1, István Molnár1, Jan Vrana2, Veronika Bure#ová3, Petr Cápal3, András Cseh1, Marta Molnar-Lang1 and Jaroslav Dolezel2, (1)Agricultural Institute, Centre for Agricultural Research, Hungarian Academy of Sciences,, Martonvásár, Hungary, (2)Institute of Experimental Botany, Olomouc, Czech Republic, (3)Institute of Experimental Botany, Centre of the Region Hana for Biotechnological and Agricultural Research, Olomouc, Czech Republic

250

P0587: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd An Integrated Approach for the Physical Mapping of Chromosome 5A in Bread Wheat

Delfina Barabaschi1, Federica Magni2, Andrea Volante1, Agata Gadaleta3, Hana Simkova4, Simone Scalabrin2, MariaLucia Prazzoli1, Paolo Bagnaresi1, Katia Lacrima1, Vania Michelotti1, Francesca Desiderio1, Luigi Orrù1, Enrico Francia5, Agostino Fricano6, Anna-Maria Mastrangelo7, Paola Tononi8, Nicola Vitulo9, Zeev M Frenkel10, Federica Cattonaro2, Michele Morgante11, Antonio Blanco3, Jaroslav Dolezel4, Massimo Delledonne8, A Michele Stanca1, Luigi Cattivelli1 and Giampiero Valè1, (1)CRA Genomics Research Centre, Fiorenzuola d'Arda, Italy, (2)Istituto di Genomica Applicata, Udine, Italy, (3)University of Bari, Bari, Italy, (4)Institute of Experimental Botany, Olomouc, Czech Republic, (5)University of Modena Reggio Emilia, Reggio Emilia, Italy, (6)PTP parco Tecnologico Padano, Lodi, Italy, (7)Consiglio per la Ricerca e sperimentazione in Agricoltura-Cereal Research Centre, Foggia, Italy, (8)University of Verona, Verona, Italy, (9)CRIBI Biotechnology Center, University of Padova, Padova, Italy, (10)University of Haifa, Haifa, Israel, (11)IGA Istituto di Genomica Applicata, Udine, Italy P0588: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even High-Density SNP Mapping and Quantitative Trait Locus Analysis of Agronomic Traits in Common Wheat

Richard D Cuthbert1, Sachin Kumar1, Ron E Knox1, Fran R Clarke1, Curtis Pozniak2, Pierre J Hucl3, Ron M DePauw1 and Yong He1, (1)AAFC-SPARC, Swift Current, SK, Canada, (2)University of Saskatchewan, Saskatoon, SK, Canada, (3)Crop Development Centre, U of Saskatchewan, Saskatoon, Saskatchewan, SK, Canada

P0589: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Construction of High Density Radiation Hybrid Map of Bread Wheat Chromosome 4A

Barbora Klocova1, Zeev M Frenkel2, Ajay Kumar3, Shiaoman Chao4, Michael Abrouk1, Schichen Wang5, Shahryar F Kianian6, Hana Simkova1, Abraham B Korol2, Eduard Akhunov5, Jaroslav Dolezel1 and Miroslav Valarik1, (1)Institute of Experimental Botany, Olomouc, Czech Republic, (2)Institute of Evolution, University of Haifa, Haifa, Israel, (3)North Dakota State University, Fargo, ND, (4)USDA-ARS, Fargo, ND, (5)Kansas State University, Manhattan, KS, (6)USDA ARS, Saint Paul, MN P0590: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Physical Map and Sequence of the Wheat Chromosome Arm 7DS

Helena Stankova1, Ming-Cheng Luo2, Zuzana Tulpova1, Paul Visendi3, Satomi Hayashi4, Alex Hastie5, Vijay K Tiwari6, Ajay Kumar7, Andrzej Kilian8, Jan Barto#1, Jacqueline Batley9, David Edwards4, Jaroslav Dolezel1 and Hana Simkova1, (1)Institute of Experimental Botany, Olomouc, Czech Republic, (2)University of California, Davis, CA, (3)Australian Centre for Plant Functional Genomics, Brisbane, Australia, (4)University of Queensland, Brisbane, Australia, (5)BioNano Genomics, San Diego, CA, (6)Kansas State University, Manhattan, KS, (7)North Dakota State University, Fargo, ND, (8)Diversity Arrays Technology Pty Ltd, Canberra, Australia, (9)The University of Western Australia, Perth, WA, Australia

P0591: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd The 5DS Physical Map Provides Insights into the Wheat D-Genome Structure and Organization

Bala Ani Akpinar1, Federica Magni2, Stuart James Lucas1, Hana Simkova3, Jan Safar3, Sonia Vautrin4, Helene Berges5, Federica Cattonaro6, Jaroslav Dolezel3 and Hikmet Budak1, (1)Sabanci University, Istanbul, Turkey, (2)Instituto di Genomica Applicata, Udine, Italy, (3)Institute of Experimental Botany, Olomouc, Czech Republic, (4)INRA - CNRGV, Castanet Tolosan, France, (5)Plant Genomic Center - INRA Toulouse, Castanet-Tolosan, France, (6)IGA Technology Services, Udine, Italy P0592: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Utilizing Historical Wheat Genotypes and Phenotypes for Modern Plant Breeding in Triticum aestivum

Trevor W Rife1, Robert Graybosch2 and Jesse Poland1, (1)Kansas State University, Manhattan, KS, (2)University of Nebraska-Lincoln, Lincoln, NE P0593: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Accuracy and Training Population Design for Genomic Selection on Quantitative Traits in Canadian Durum Wheat Breeding Lines

Jemanesh K Haile1, Amidou N'Diaye1, Fran R Clarke2, John M Clarke1 and Curtis J Pozniak1, (1)University of Saskatchewan, Saskatoon, SK, Canada, (2)AAFC-SPARC, Swift Current, SK, Canada

P0594: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even CIMMYT-Wheat Seed: Characterization and Mobilizing Useful Variation from Gene Bank to Breeding Pipelines

Sukhwinder Singh1, Prashant Vikram1, Carolina Saint Pierre1, Juan Burgueño2, Huihui Li1, Gamboa Sergio Cortez3, Gaspar Estrada Campuzano4, Pedro Figueroa López5, Guillermo Fuentes Dávila6, Víctor Manuel Hernández Muela6, Carolina Paola Sansaloni7, Javier Ireta Moreno6, Carlos Moisés Hernández1, Carlos Gustavo Martínez Rueda4, Leodegario Osorio Alcalá5, Ruairidh Sawers8, Ernesto Solís Moya5, Héctor Eduardo Villaseñor Mir5, Víctor Zamora Villa9, Ivan Ortiz-Monasterio1, Thomas Payne1, Roberto J Pena10, Matthew Reynolds11, Pawan Singh1, Andrzej Kilian12, Peter Wenzl13 and Kevin Pixley7, (1)CIMMYT, Texcoco, Mexico, (2)CIMMYT, El Batan, Mexico, (3)Universidad Politécnica de Francisco I Madero, Mexico, Mexico, (4)Universidad Autónoma del, México, Mexico, (5)INIFAP, Mexico, Mexico, (6)INIFAP, México, Mexico, (7)CIMMYT, Texcoco, Mexico, (8)Laboratorio Nacional de Genómica para la Biodiversidad, Mexico, Mexico, (9)Universidad Autónoma Agraria Antonio Narro, Mexico, Mexico, (10)CIMMYT, Mexico DF, Mexico, (11)CIMMYT, Obregon, Mexico, (12)Diversity Arrays Technology (DArT), Canberra, Australia, (13)CIMMYT - International Maize and Wheat Improvement Centre, El Batan, Mexico P0595: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Optimization of Training Population Under Population Structure in Genomic Selection

Julio Isidro Sánchez, Cornell University, Ithaca, NY

251

P0596: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even The Wheat Landrace Core Collections: Potential Resource for the Breeders

Prashant Vikram1, Juan Burgueño2, Jorge Franco3, Matthew Reynolds4, Carolina Saint Pierre1, Carlos Guzmán1, Pawan Singh1, Thomas Payne1 and Sukhwinder Singh1, (1)CIMMYT, Texcoco, Mexico, (2)CIMMYT, Texcoco, Mexico, (3)Facultad de Agronomia, Paysandu, Uruguay, (4)CIMMYT, Obregon, Mexico P0597: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd A New BAC Ends Sequencing Approach to Improve Wheat 1B Chromosome Assembly

Karine Labadie1, Laura Brinas2, Caroline Belser3, Adriana Alberti1, Céline Durand1, Laurie Bertrand3, Arnaud Couloux1, Jean-Marc Aury1, Valerie Barbe1, Frederic Choulet4, Etienne Paux4 and Patrick Wincker1, (1)CEA - Genoscope, Evry, France, (2)CEA, EVRY, France, (3)CEA - Genoscope, EVRY, France, (4)INRA GDEC, Clermont-Ferrand, France P0598: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Genomic Selection for Wheat (Triticum aestivum L) Trait and Trait Stability

Mao Huang, Ohio State University, Wooster, OH and Clay Sneller, Ohio State University, Wooster, OH

P0599: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Realized Genomic Selection Prediction Accuracies for End-Use Quality in CIMMYT Spring Wheat Breeding Program

Sarah D Battenfield1, Jesse Poland1, Ravi P Singh2, Carlos Guzmán3, Roberto J Pena4 and Allan K Fritz1, (1)Kansas State University, Manhattan, KS, (2)CIMMYT, Mexico City, Mexico, (3)CIMMYT, Texcoco, Mexico, (4)CIMMYT, Mexico DF, Mexico P0600: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even The Development of a Customised Single Nucleotide Polymorphism (SNPs) Panel for Molecular Marker Assisted Selection within an Applied Breeding Program

Jennifer L Zantinge, Shiming Xue, Michael Holtz, Patricia Juskiw, Joseph Nyachiro, Mazen Aljarrah, James H Helm, Yadeta Kabeta, Kequan Xi, Lori Oatway, Krishan Kumar and Flavio Capettini, Field Crop Development Centre- Alberta Agriculture and Rural Development, Lacombe, AB, Canada P0601: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Exploring the Genetics of Earliness in the CDC Teal " CDC Go Canadian Western Red Spring Wheat Mapping Population

Hua Chen, University of Alberta, Edmonton, AB, Canada

P0602: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even RNA-Seq Bulked Segregant Analysis Enables the Identification of High-Resolution Genetic Markers for Breeding in Hexaploid Wheat

Ricardo H Ramirez-Gonzalez1, Mario Caccamo1, Cristobal Uauy2, Vanesa Segovia2, Nicholas Bird3, Paul Fenwick4, Sarah Holdgate5, Simon Berry4 and Peter Jack6, (1)The Genome Analysis Centre, Norwich, United Kingdom, (2)John Innes Centre, Norwich, England, (3)John Innes Centre, Norwuch, United Kingdom, (4)Limagrain UK Ltd, Market Rasen, United Kingdom, (5)NIAB, Cambridge, United Kingdom, (6)RAGT Seeds, Saffron Walden, United Kingdom P0603: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Breeding for Nitrogen Use Efficiency in Hard Winter Wheat Using Canopy Spectral Reflectance and Genomic Selection

Katherine Frels, Mary Guttieri and P Stephen Baenziger, University of Nebraska-Lincoln, Lincoln, NE P0604: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Mapping Yield and Yield-Component QTL in a Durum Wheat (Triticum turgidum ssp durum) Multi-Parental Cross Population

Sara G Milner1, Marco Maccaferri1, Bevan E Huang2, Elisabetta Frascaroli1, Paola Mantovani3, Andrea Massi4, Roberto Tuberosa1 and Silvio Salvi1, (1)DipSA - University of Bologna, Bologna, Italy, (2)CSIRO, Food Futures Flagship and CMIS, Brisbane, Australia, (3)Società Produttori Sementi, Argelato, Italy, (4)Società Produttori Sementi Bologna, Argelato, Italy

P0605: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Genome-Wide Association Mapping of Nitrogen Use Efficiency Traits in Hard Winter Wheat

Mary Guttieri1, Katherine Frels1, Brian M Waters1, P Stephen Baenziger1, Eduard Akhunov2 and Schichen Wang2, (1)University of Nebraska-Lincoln, Lincoln, NE, (2)Kansas State University, Manhattan, KS P0606: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Genome-Wide Association Study of Flowering Time in Hexaploid Winter Wheat

Zifeng Guo1, Marion S Röder1, Martin W Ganal2 and Thorsten Schnurbusch3, (1)IPK, Gatersleben, Germany, (2)TraitGenetics GmbH, Gatersleben, Germany, (3)Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany P0607: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Homoeologous Pairing and Molecular Genotyping Reveal New Evolutionary Evidence of Wheat B Genome

Wei Zhang1, Mingyi Zhang1, Xianwen Zhu1, Shiaoman Chao2, Steven S Xu2 and Xiwen Cai1, (1)North Dakota State University, Fargo, ND, (2)USDA-ARS, Fargo, ND

252

P0608: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Phenotypic, Spectral Reflectance, and Genetic Analysis of Yield in Spring Wheat Accessions

Brian Carter Bowman, University of Idaho, Aberdeen, ID P0609: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Influence of the Genes at the Ha Loci on Hardness in Wheat

Ravi Chandrabhan Nirmal, Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, Brisbane, Australia P0610: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Structure and Function of Ph1 (Pairing homoeologous 1) Gene of Wheat

Ramanjot Kaur, Kanwardeep Singh, Ragupathi Nagarajan, Amita Mohan and Kulvinder Gill, Washington State University, Pullman, WA P0611: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Glume Transcriptome Profiling in Wild vs Domesticated Tetraploid Wheat

Hongda Zou1, Raanan Tzarfati1, Tamar Krugman2, Sariel Hubner3, Tzion Fahima2, Shahal Abbo4, Abraham B Korol1 and Yehoshua Saranga4, (1)Institute of Evolution, University of Haifa, Haifa, Israel, (2)University of Haifa, Haifa, Israel, (3)University of British Columbia, Vancouver, BC, Canada, (4)R H Smith Institute of Plant Science & Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel

P0612: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even The Induction and Detection of Novel Allelic Variants of TaAP2 Homoeologs for the Engineering of Cleistogamy in Wheat

Katsuyuki Kakeda1, Masahiro Tomokazu1, Masayuki Ishihara1, Fuminori Kobayashi2, Youko Oono2, Yumiko Hanawa2, Daiki Kawada2, Hirokazu Handa2, Kazuhiko Sugimoto2 and Takao Komatsuda2, (1)Graduate School of Bioresources, Mie University, Tsu, Japan, (2)National Institute of Agrobiological Sciences, Tsukuba, Japan P0613: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Evaluation of Cell Wall Biosynthetic Genes in Hollow- and Solid-Stemmed Genotypes of Wheat (Triticum aestivum)

Leticia Meza1, Marsha Jordan1, Ruth Osborne1, Jamie Sherman2, Luther Talbert2, Dale Clark3, Nidhi Rawat4 and Christopher Botanga1, (1)Chicago State University, Chicago, IL, (2)Montana State University, Bozeman, MT, (3)WestBred, Bozeman, MT, (4)Kansas State University, Manhattan, KS P0614: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Factors Influencing Variation in Wheat Grain Fructan Content

Lynn D Veenstra1, Mark E Sorrells1 and Jean-Luc Jannink2, (1)Cornell University, Ithaca, NY, (2)USDA-ARS, Ithaca, NY

P0615: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Dissecting Genetic Networks Underlying Wheat Kernel Characteristics in an Elite " Non-Adapted Cross Using 90k SNP Iselect Assay

Ajay Kumar1, Morgan Echeverry-solarte1, Senay Simsek1, Mohammed Alamri2, Mohamed Mergoum1 and Eder Eduardo Mantovani1, (1)North Dakota State University, Fargo, ND, (2)King Saud University, Riyadh, Saudi Arabia P0616: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Pollen Development in Crops - Barley and Wheat

Jose Fernandez Gomez, University Of Nottingham, Nottingham, United Kingdom P0617: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Genome-Wide Association Analysis of Grain Pigment Colour in Elite Durum Wheat Breeding Lines, Using Single SNP- and Haplotype-Based Approach in Durum Wheat

Amidou N'Diaye1, Jemanesh K Haile1, Fran R Clarke2, John M Clarke1, Ron E Knox2 and Curtis J Pozniak1, (1)University of Saskatchewan, Saskatoon, SK, Canada, (2)AAFC-SPARC, Swift Current, SK, Canada

P0618: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even High Density SNP Mapping to Identify Candidate Genes Underlying QTL for Pre-Harvest Sprouting in Wheat

Mark Jordan1, Adrian Cabral2 and Curt A McCartney1, (1)Agriculture and Agri-Food Canada, Morden, MB, Canada, (2)National Reseacrh Council of Canada, Sakatoon, SK, Canada P0619: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Bioavailabilty of Wheat Neutrients Is an Emerging Challenge for Breeders

Irum Aziz and Richard Trethowan, The University of Sydney, Australia, Sydney, Australia P0620: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even High-Density SNP Mapping and Quantitative Trait Locus Analysis of Glaucousness and Leaf Colour in Common Wheat

Sachin Kumar1, Ron E Knox1, Fran R Clarke1, Richard D Cuthbert1, Curtis Pozniak2, Ron M DePauw1 and Yong He1, (1)AAFC-SPARC, Swift Current, SK, Canada, (2)University of Saskatchewan, Saskatoon, SK, Canada

253

P0621: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Genetic Assessment of Yield and Yield Components in a Highly Structured Jordanian Durum Wheat Landrace Germplasm Under Different Semi-Arid Climatic Conditions

Amer Karadsheh1, Nasri Haddad1, Murari Singh2, Salvatore Ceccarelli3, Maen Hasan4, Abdul Qader Jighly5 and Ayed Al Abdallat2, (1)Univeristy of Jordan, Amman, Jordan, (2)International Center for Agricultural Research in the Dry Areas, Amman, Jordan, (3)International Center for Agricultural Research in the Dry Areas, Beirut, Lebanon, (4)Al-Balqa Applied University, Al Salt, Jordan, (5)International Center for Agricultural Research in the Dry Areas, Cairo, Egypt P0622: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Precise Transfer of Useful Variability for High Grain Micronutrients from Wheat-Aegilops Substitution Lines into Bread Wheat through Pollen Radiation Hybrid Approach

Imran Sheikh1, Prachi Sharma2, Shailender Kumar Verma3, Satish Kumar4, Sachin Malik5, Dharmerndra Singh1, Vishal Chugh1, Sundip Kumar5 and HS Dhaliwal6, (1)Eternal University, Sirmour, HP, India, (2)Eternal University, Sirmour, Himachal Pradesh, India, (3)Central University of HImachal Pradesh, Kangra, India, (4)Indian Institute of Technology, Roorkee, Roorkee, India, (5)GBPUAT, Pantnagar-263145, Uttarakhand, Pant Nagar, India, (6)Eternal University, Baru-Sahib, India

P0623: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Application of Higher Concentration of Zn Influences DNA Methylation in Plant Genome

Maren A Johnson1, Matthew Bauduin1, Lindsey Shimpa1, Venu (Kal) Kalavacharla2 and Khwaja G Hossain1, (1)Mayville State University, Mayville, ND, (2)Delaware State University, Dover, DE P0624: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Towards Developing Co-Dominant Markers for Wsm1 and Cmc4 in Winter Wheat

Carol Powers, Liuling Yan and Brett F Carver, Oklahoma State University, Stillwater, OK P0625: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Development of Kaspar SNP Markers for Host Plant Resistance to Biotic Stress in Wheat

Chor Tee Tan1, Shuyu Liu1, Silvano Ocheya2, Smit Dhakal2, Jackie C Rudd1, Qingwu Xue1, Guorong Zhang3, Guihua Bai4, Xinzhong Zhang5, Ravindra Devkota1 and Maria Fuentealba1, (1)Texas A&M AgriLife Research, Amarillo, TX, (2)Department of Soil and Crop Sciences, Texas A&M University, College Station, TX, (3)Kansas State University, Hays, KS, (4)USDA ARS, Manhattan, KS, (5)Kansas State University, Manhattan, KS

P0626: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Investigating Mechanisms of Cold Tolerance in Cereals By Comparing Whole-Chromosome Shotgun Assemblies of Wheat Chromosome 5A and the Long Arm of Rye Chromosome 5R

Dustin J Cram, National Research Council of Canada, Saskatoon, SK, Canada P0627: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Identification of a New Microsatellite Marker Linked to Grain Filling Rate as an Indicator for Heat Tolerance Genes in a DH Wheat Population

Mohamed N Barakat1, Khaled A Moustafa2, Adel A Elshafei2, Mohammed Alamri3 and Mohamed Motawei4, (1)King Saud University, Riyadh, Saudi Arabia, (2)Collage of Food and Agriculture- King Saud University, Riyadh, Saudi Arabia, (3)2Dept of Food Sciences and Nutrition, College of Food and Agricultural Sciences, King Saud University, Riyadh, Riyadh, Saudi Arabia, (4)3Plant Production& Protection Department, Faculty of Agriculture& Veterinary Medicine, Al-Qassim University, Saudi Arabia, Burida, Saudi Arabia P0628: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Understanding the Role of Cytoplasmic Genomes in Stress Tolerance of Wheat

Marisa Elena Miller, University of Minnesota/USDA-ARS, St Paul, MN, Katie L Liberatore, USDA-ARS Cereal Disease Laboratory, St Paul, MN and Shahryar F Kianian, USDA ARS, Saint Paul, MN

P0629: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Association Mapping for Agronomic Traits in an Elite Spring Wheat Panel Under Drought and Irrigated Conditions

Jayfred Gaham Godoy1, Luther Talbert2, Shiaoman Chao3 and Michael Pumphrey1, (1)Washington State University, Pullman, WA, (2)Montana State University, Bozeman, MT, (3)USDA-ARS, Fargo, ND P0630: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Diversity of Root Traits in Great Plains Winter Wheat Under Drought Stress

Wahid Awad, Colorado State University, Fort Collins, CO P0631: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd A Systems Biology Route Towards Understanding Temperature-Sensitive Subgenome Interplay in Triticum aestivum Endosperm

Karl G Kugler1, Matthias Pfeifer1, Anne K Uhlen2, Klaus FX Mayer3 and Odd-Arne Olsen2, (1)Institute of Bioinformatics & Systems Biology, MIPS, Neuherberg, Germany, (2)Norwegian University of Life Sciences, Aas, Norway, (3)Plant Genome and Systems Biology, Helmholtz Center Munich, Neuherberg, Germany

254

P0632: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Identification of Quantitative Trait Loci for Four Physiological Traits in an Advanced Backcross Population of Wheat Under Drought Stress

Abdullah A AL-Doss1, Mohamed N Barakat1, Khaled A Moustafa1 and Abdelazem Salem2, (1)Collage of Food and Agriculture- King Saud University, Riyadh, Saudi Arabia, (2)King Saud University, Riradh, Saudi Arabia P0633: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Expression Analysis of an Introgressed Gene in Bread Wheat

Melda Kantar and Hikmet Budak, Sabanci University, Istanbul, Turkey P0634: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Identification of High Throughput SNP Markers Linked to QTL for Drought Tolerance and Wsm2 Gene in US Hard Red Winter Wheat and Applications in Breeding

Silvano Ocheya1, Shuyu Liu2, Jackie C Rudd2, Amir Ibrahim1, Guorong Zhang3, Qingwu Xue2, Dirk Hays1, Ravindra Devkota2, Shiaoman Chao4, Guihua Bai5, Scott Haley6, Jianli Chen7, Chor Tee Tan2, Maria Fuentealba2, Shannon Baker2 and Jason Baker2, (1)Texas A&M University, College Station, TX, (2)Texas A&M AgriLife Research, Amarillo, TX, (3)Kansas State University, Hays, KS, (4)USDA-ARS, Fargo, ND, (5)USDA ARS, Manhattan, KS, (6)Colorado State University, Fort Collins, CO, (7)University of Idaho, Aberdeen, ID

P0635: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd FHB Resistant Wheat through Transgressive Segregation

Wentao Zhang1, Tammy Francis1, Peng Gao1, Kerry Boyle1, Lipu Wang1, Li Forseille1, Fengying Jiang2, François Eudes2 and Pierre Fobert1, (1)National Research Council Canada, Saskatoon, SK, Canada, (2)Agriculture and Agri-Food Canada, Lethbridge, AB, Canada P0636: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even QTLs from Wild Emmer Wheat Improve Drought Resistance in Modern Wheat Cultivars

Lianne Merchuk, Faculty of Agriculture Food & Environment, the Hebrew University of Jerusalem, Rehovot, Israel, Yehoshua Saranga, R H Smith Institute of Plant Science & Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel, Tamar Krugman, University of Haifa, Haifa, Israel, Tzion Fahima, Institute of Evolution, University of Haifa, Haifa, Israel, Gabriel Lidzbarsky, Institute of Evolution, University of Haifa, israel, Israel and Vered Barak, The Robert H Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, rehovot, Israel

P0637: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd A Genome-Wide Association Study of Resistance to Stripe Rust (Puccinia striiformis f sp tritici) in a Worldwide Collection of Hexaploid Spring Wheat (Triticum aestivum L)

Marco Maccaferri1, Junli Zhang2, Peter Bulli3, Zewdie A Abate4, Shiaoman Chao5, Dario Cantu2, Eligio Bossolini6, Xianming Chen7, Michael Pumphrey3 and Jorge Dubcovsky2, (1)DipSA - University of Bologna, Bologna, Italy, (2)University of California Davis, Davis, CA, (3)Washington State University, Pullman, WA, (4)MONSANTO, Yuma, AZ, (5)USDA-ARS, Fargo, ND, (6)Bayer CropScience, Gent, Belgium, (7)USDA-ARS, Pullman, WA P0638: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Identification of Candidate Genes in QTL 2DL and Deciphering Mechanisms of Resistance Against Fusarium Head Blight Based on Metabolo-Genomics in Wheat

Udaykumar Kage, McGill University, SAINTE ANEE DE BELLEVUE, QC, Canada and Ajjamada Chengappa Kushalappa, McGill University, Saint-anne-de-bellevue, QC, Canada P0639: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd From Prediction to Discovery of New Stripe Rust Resistance Genes in Landraces from Watkins Collection-Triticum aestivum L

Urmil Bansal1, Debbie Wong2, Kerrie Forrest2, Bosco Chemayek1, Mumta Chhetri1, Mesfin Gessese1, Vallence Nsabiyera1, Mandeep Randhawa1, Hans D Daetwyler2, Ben Hayes2, Matthew J Hayden2 and Harbans Bariana1, (1)University of Sydney, Cobbitty, Australia, (2)Department of Environment and Primary Industries, Bundoora, Australia

P0640: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Mapping Quantitative Trait Loci for Slow-Rusting Traits in Wheat

Yue Lu, Kansas State University Agronomy Department, Manhattan, KS P0641: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Fine Mapping of the Genomic Region Carrying Linked Rust Resistance Genes Lr52 and Yr47 in Common Wheat

Naeela Qureshi1, Kerrie Forrest2, Thomas Wicker3, Matthew J Hayden2, Justin D Faris4, Beat Keller3, Harbans Bariana1 and Urmil Bansal1, (1)University of Sydney, Cobbitty, Australia, (2)Department of Environment and Primary Industries, Bundoora, Australia, (3)University of Zurich, Zurich, Switzerland, (4)USDA-ARS, Fargo, ND P0642: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Identification and Mapping of Sources of Resistance to Stem Rust in Spark/Rialto DH Wheat Population

Banchgize Getie Temesgen1, Davinder Singh2, Urmil Bansal3, James Simmonds4, Cristobal Uauy5 and Robert Park2, (1)The University of Sydney, Sydney, Australia, (2)The University of Sydney, Camden, NSW, Australia, (3)University of Sydney, Cobbitty, Australia, (4)Jones Innes Center, Norwich, United Kingdom, (5)John Innes Centre, Norwich, England

255

P0643: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd A 2DS Chromosome Carries a Complex of Leaf Rust Resistance Alleles in Wheat

Toi John Tsilo, Tarekegn Terefe, Tsepiso Hlongoane and Joyce Mebalo, Agricultural Research Council - Small Grain Institute, Bethlehem, South Africa P0644: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Dissection of Wheat Stem Rust Resistance in the Montenegrin Landrace PI362698

Jason D Zurn1, Matthew Rouse2, Shiaoman Chao3, Godwin Macharia4, J Michael Bonman5 and Maricelis Acevedo1, (1)North Dakota State University, Fargo, ND, (2)USDA-ARS Cereal disease laboratory, St Paul, MN, (3)USDA-ARS, Fargo, ND, (4)Kenya Agricultural & Livestock Research Organization, Njoro, Kenya, (5)USDA-ARS, Aberdeen, ID P0645: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Mapping Resistance to the Ug99 Race Group of the Stem Rust Pathogen in a Spring Wheat Landrace

Ebrahiem Babiker, USDA-ARS, Aberdeen, ID

P0646: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Pyramiding Stem Rust Resistance Genes into South African Wheat Cultivars

Tsepiso Hlongoane1, Timmy A Baloyi1, Adré Minnaar-Ontong2, Toi John Tsilo1 and Tebogo Oliphant1, (1)Agricultural Research Council - Small Grain Institute, Bethlehem, South Africa, (2)University of the Free State, Bloemfontein, South Africa P0647: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Genetic Gain from Phenotypic and Genomic Selection for Quantitative Resistance to Stem Rust of Wheat

Jessica Rutkoski, Cornell University, International programs of the college of agriculture and life sciences and The plant breeding and genetics section of the school of integrated plant sciences, Ithaca, NY, Ravi P Singh, CIMMYT, Mexico City, Mexico, Julio Huerta-Espino, INIFAP, Chapingo, Mexico, Sridhar Bhavani, CIMMYT, Nairobi, Kenya, Jesse Poland, Kansas State University, Manhattan, KS, Jean-Luc Jannink, USDA-ARS, Ithaca, NY and Mark E Sorrells, Cornell University, Ithaca, NY P0648: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even The Powdery Mildew Resistance Gene Pm8 Derived from Rye Is Suppressed By Its Wheat Ortholog Pm3

Severine Hurni1, Susanne Brunner1, Daniel Stirnweis1, Gerhard Herren1, David Peditto1, Robert A McIntosh2 and Beat Keller1, (1)University of Zurich, Zurich, Switzerland, (2)University of Sydney, Narellan, Australia

P0649: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Characterization of Historic South African Wheat Cultivars for Seedling Resistance to Cereal Rusts

Pamella Ntshakaza1, Timmy A Baloyi2, Bomikazi N Gqola3, Tarekegn Terefe2, Hussein Shimelis4 and Toi John Tsilo2, (1)Agricultural Research Council, Bethlehem, South Africa, (2)Agricultural Research Council - Small Grain Institute, Bethlehem, South Africa, (3)Agricultural Research council, Bethlehem, South Africa, (4)University of Kwa-Zulu Natal, Pietermaritzburg, South Africa P0650: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Characterization of Virulence Factors in Spot Form Net Blotch

Nathan A Wyatt, Dept Veterinary and Microbiological Sciences, North Dakota State University, Fargo, ND, Steven A Carlsen, Department of Plant Pathology, North Dakota State Univ, Fargo, ND, Robert S Brueggeman, Department of Plant Pathology, North Dakota State University, Fargo, ND and Timothy L Friesen, USDA-ARS, Fargo, ND P0651: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Genome-Wide Association Mapping of Susceptibility to Stagonospora nodorum Blotch in Emmer Wheat

Qun Sun1, Shiaoman Chao2, Timothy L Friesen2, Justin D Faris2 and Steven S Xu2, (1)North Dakota State University, Fargo, ND, (2)USDA-ARS, Fargo, ND

P0652: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Modelling Effector-Receptor Interactions and Susceptibility to Septoria nodorum Blotch in Wheat

Huyen TT Phan1, Kasia Clarke1, Eiko Furuki1, Richard P Oliver1, Diane Mather2 and Kar-Chun Tan1, (1)Curtin University, Perth, Australia, (2)Australian Centre for Plant Functional Genomics, Adelaide, Australia P0653: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd The Triticeae Toolbox (T3): Managing Big Data, Experiment Design, and Phenotyping Tools

Clay Birkett1, Jean-Luc Jannink2, Victoria Carollo Blake3 and David Matthews1, (1)USDA-ARS, Ithaca, NY, (2)Cornell University, Ithaca, NY, (3)USDA ARS WRRC, Albany, CA P0654: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Wheat3BMine, a Data Warehouse Dedicated to Wheat Chromosome 3B

Thomas Letellier1, Loic Couderc1, Frederic Choulet2, Manuel Spannagl3, Cyril Pommier1, Josep Lluis Gelpi Buchaca4, Paul J Kersey5, Hadi Quesneville1, Delphine Steinbach1 and Michael Alaux1, (1)INRA - URGI, Versailles, France, (2)INRA GDEC, Clermont-Ferrand, France, (3)Institute of Bioinformatics & Systems Biology, MIPS, Neuherberg, Germany, (4)Universitat de Barcelona, Barcelona, Spain, (5)EMBL - The European Bioinformatics Institute, Cambridge, United Kingdom

256

P0655: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Building a Bridge from the Barley National Germplasm Collection to Breeding Programs

Alexandrea Ollhoff, University of Minnesota- Twin Cities, Saint Paul, MN P0656: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even The Triticeae Toolbox (T3): From the Ground Up

Victoria Carollo Blake1, David E Matthews2, Clay Birkett3 and Jean-Luc Jannink3, (1)USDA ARS WRRC, Albany, CA, (2)USDA ARS, Ithaca, NY, (3)USDA-ARS, Ithaca, NY P0657: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd A Barley Root Mutant Collection for Fast Forward Genetics

Riccardo Bovina1, Sara G Milner1, Carlos Busanello2, Valentina Talame1, Nils Stein3, Roberto Tuberosa1 and Silvio Salvi1, (1)DipSA - University of Bologna, Bologna, Italy, (2)Department of Plant Science, University Federal of Pelotas, Capão do Leão-RS, Brazil, (3)Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany

P0658: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Defining the Gene-Rich Portion of the Barley Genome

Maria Muñoz-Amatriain1, Stefano Lonardi1, Steve Wanamaker1, Ming-Cheng Luo2, Jan Barto#3, Jaroslav Dolezel3, Hamid Mirebrahim1, Rachid Ounit1, Nils Stein4, Roger Wise5, Andris Kleinhofs6, Gary J Muehlbauer7 and Timothy J Close1, (1)University of California, Riverside, CA, (2)University of California, Davis, CA, (3)Institute of Experimental Botany, Olomouc, Czech Republic, (4)Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany, (5)USDA-ARS, Iowa State University, Ames, IA, (6)Washington State University, Pullman, WA, (7)Department of Plant Biology, University of Minnesota, St Paul, MN P0659: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Genomic Prediction in Barley

Vahid Edriss1, Fabio Cericola1, Jens D Jensen2, Jihad Orabi2, Ahmed Jahoor2 and Just Jensen3, (1)Aarhus University, Tjele, Denmark, (2)Nordic Seed, Holeby, Denmark, (3)Molecular Biology and Genetics, Aarhus University, Tjele, Denmark P0660: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even The Role of microRNA172 in Regulating the Barley Cleistogamy 1 Gene

Nadia Anwar1, Takayuki Yazawa1, Akemi Tagiri1, Mari Sakuma1, Thomas Nussbaumer2, Mohammad Pourkheirandish1 and Takao Komatsuda1, (1)National Institute of Agrobiological Sciences, Tsukuba, Japan, (2)MIPS/IBIS, Helmholtz Center Munich, Munich, Germany

P0661: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Association Mapping of Quantitative Trait Loci for Tillering Traits in Barley

Allison M Haaning, Kevin P Smith and Gary J Muehlbauer, University of Minnesota, Saint Paul, MN P0662: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Characterizing Barley Malting Quality QTL Using a Ds Transposon-Based Functional Genomics and Synteny-Based Comparative Approach

Surinder Singh, McGill University, Ste Anne De Bellevue, QC, Canada and Jaswinder Singh, McGill University, Ste Anne de Bellevue, QC, Canada P0663: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Molecular Characterization of the Cytoplasmic Male Sterility System Underlying the Breeding and Production of HyvidoTM Hybrids in Barley

Carine Rizzolatti1, Nathalie Rodde2, Hélène Bergès2, Edouard Tatara3, Pierre Pin1, Françoise Budar4, Hakim Mireau4, Paul Bury5 and Jan Gielen1, (1)Syngenta, Saint-Sauveur, France, (2)INRA - CNRGV, Castanet Tolosan, France, (3)Syngenta, Orgerus, France, (4)INRA, Versailles, France, (5)Syngenta, Market Stainton, England

P0664: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Nitrogen Use Efficiency (NUE) and Malt Quality GWAS in Elite Facultative/Winter 6-Rowed Barley (Hordeum vulgare)

Araby Belcher, Alfonso Cuesta-Marcos, Ryan Graebner and Patrick M Hayes, Oregon State University, Corvallis, OR P0665: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Allele Frequency Changes over Five Cycles of Genomic Selection in a Barley Breeding Population

Tyler Tiede1, Ahmad Sallam1, Karen Beaubian1, Shiaoman Chao2, Aaron Lorenz3 and Kevin P Smith4, (1)University of Minnesota, St Paul, MN, (2)USDA-ARS, Fargo, ND, (3)University of Nebraska–Lincoln, Lincoln, NE, (4)Department of Agronomy and Plant Genetics, University of Minnesota, St Paul, MN P0666: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Droplet Digital PCR for Estimation of Allele Frequencies in Barley: Evaluation Using F1 Hybrid DNA

Sung-Jong Lee and Daniel Perry, Canadian Grain Commission, Winnipeg, MB, Canada

257

P0667: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Use of the Wheat ph1 Mutant to Introgress Hordeum chilense Chromosome Fragments to Enhance Antioxidant Content in Bread Wheat

Pilar Prieto1, M Dolores R Rey2, MC Calderón1, MJ Rodrigo3, L Zacarías3 and E Alós1, (1)Institute for Sustainable Agriculture, Cordoba, Spain, (2)Institute for Sustainable Agriculture (IAS-CSIC), Córdoba, single, Spain, (3)Institute of Agrochemistry and Food Technology, Cordoba, Spain P0668: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Identification of Manganese Use Efficiency Candidate Genes in Winter Barley (Hordeum vulgare): GWAS on Chlorophyll a Fluorescence and ICP-OES

Florian Leplat, Pai Pedas, Søren Husted and Søren Kjærsgaard Rasmussen, University of Copenhagen, Frederiksberg C, Denmark P0669: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Barley Domestication History: A Puzzle with Many Pieces

Ana M Poets1, Zhou Fang1, Michael T Clegg2 and Peter L Morrell3, (1)University of Minnesota, Saint Paul, MN, (2)University of California, Irvine, CA, (3)Department of Agronomy and Plant Genetics, University of Minnesota, Saint Paul, MN

P0670: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Genotypic and Phenotypic Analyses of Wild and Intermedium Barleys Highlights Two Distinct Row-Types in Hordeum spontaneum

Helmy M Youssef, IPK-Gatersleben, Germany, Gatersleben, Germany, Martin Mascher, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany, Mohammam Ayoub, UMC Utrecht, Utrecht, Netherlands, Nils Stein, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Stadt Seeland, Germany and Thorsten Schnurbusch, IPK- gatersleben, Gatersleben, Germany P0671: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Cloning of cer-zv, a Novel Gene Responsible for Cutin Formation in the Barley Leaf Cuticle

Chao Li1, Guoxiong Chen2, Kohei Mishina1, Mohammad Pourkheirandish1, Cheng Liu1, Nadia Anwar1, Pengshan Zhao2, Udda Lundqvist3, Christiane Nawrath4, Takashi R Endo5 and Takao Komatsuda1, (1)National Institute of Agrobiological Sciences, Tsukuba, Japan, (2)Key Laboratory of Stress Physiology and Ecology in Cold and Arid Regions, Gansu Province, Cold and Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Sciences, Lanzhou, China, (3)Nordic Genetic Resource Center, Alnarp, Sweden, (4)Department of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland, (5)Centre of Plant Structural and Functional Genomics, Institute of Experimental Botany, Holice, Czech Republic

P0672: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Exploring Wild Barley Germplasm in an Advanced Backcross-Nested Association Mapping (AB-NAM) Population

Liana Nice1, Kevin P Smith2, Brian J Steffenson1, Gina Brown-Guedira3, Richard Horsley4, Tom Blake5 and Gary J Muehlbauer6, (1)University of Minnesota, St Paul, MN, (2)Department of Agronomy and Plant Genetics, University of Minnesota, St Paul, MN, (3)USDA/ARS PSRU, Raleigh, NC, (4)North Dakota State University, Fargo, ND, (5)Montana State University, Bozeman, MT, (6)Department of Plant Biology, University of Minnesota, St Paul, MN P0673: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Genome-Wide Association Mapping of Low Temperature Tolerance (LTT) in Barley (Hordeum vulgare L) to Improve Crop Efficiency Under Climate Change

Dustin W Herb1, Patrick M Hayes1, Alfonso Cuesta-Marcos2 and Scott Fisk1, (1)Oregon State University, Corvallis, OR, (2)Oregon State University, Corvalis, OR P0674: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Structural Variation at Fr-H2 Locus Is Associated to Frost Tolerance Trait in Barley

Nicola Pecchioni1, Justyna Milc2, Marianna Pasquariello2, Caterina Morcia3, Valeria Terzi3 and Enrico Francia2, (1)CRA-CER Cereal Research Centre, Foggia, Italy, (2)University of Modena and Reggio Emilia, Reggio Emilia, Italy, (3)CRA-GPG Genomic Research Centre, Fiorenzuola d'Arda (PC), Italy

P0675: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Characterization of the Barley nec3 Gene; A Negative Regulator of Pathogen Elicited Programmed Cell Death

Lauren P Sager Bittara1, Xue Wang1, Jonathan Richards2, Timothy L Friesen3 and Robert S Brueggeman2, (1)Department of Plant Pathology, North Dakota State Univ, Fargo, ND, (2)Department of Plant Pathology, North Dakota State University, Fargo, ND, (3)USDA-ARS, Fargo, ND P0676: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Elucidating the Molecular Mechanisms of Intermediate Host Resistance in Barley to Wheat Stripe Rust

Andrew M Dawson, The Sainsbury Laboratory, Norwich, United Kingdom P0677: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Genetics and Sources of Stem Rust Resistance in Barley

Austin J Case1, Brian J Steffenson1 and Sridhar Bhavani2, (1)University of Minnesota, St Paul, MN, (2)CIMMYT, Nairobi, Kenya

258

P0678: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Three-Gene Combinations Involving Rph20 Provide Stable Resistance to Leaf Rust in Barley

Laura Ashlee Ziems1, Jerome Franckowiak2, Gregory J Platz3, Emma Mace4, Robert Park5, Davinder Singh5, David R Jordan6 and Lee Hickey7, (1)QAAFI - The University of Queensland, Brisbane, Australia, (2)Department of Agriculture, Fisheries and Forestry,, Warwick, Australia, (3)Department of Agriculture, Fisheries and Forestry, Warwick, Australia, (4)Queensland Government, Warwick, Australia, (5)The University of Sydney, Camden, NSW, Australia, (6)University of Queensland, Warwick, Australia, (7)QAAFI, The University of Queensland, Brisbane, Australia P0679: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Fine Mapping and Genome Characterization of the Net Form Net Blotch Susceptibility Locus on Barley

Jonathan Richards1, Zhaohui Liu2, Timothy L Friesen3 and Robert S Brueggeman1, (1)Department of Plant Pathology, North Dakota State University, Fargo, ND, (2)North Dakota State University, Fargo, ND, (3)USDA-ARS, Fargo, ND P0680: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Fine Mapping of a Gene for Resistance to a New Pathotype of Bipolaris sorokiniana in Barley

Rui Wang, Robert S Brueggeman, Yueqiang Leng and Shaobin Zhong, Department of Plant Pathology, North Dakota State University, Fargo, ND

P0681: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Characterization of CesA6 in Oat

Cassandra Anne Dohse, Melissa C Fogarty and Eric N Jellen, Brigham Young University, Provo, UT P0682: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Oat Global: Uniting the Oat World at OatGlobalorg

Gabriele Gusmini, PepsiCo, St Paul, MN, Catherine Howarth, IBERS, Aberystwyth University, Aberystwyth, United Kingdom, Nicholas A Tinker, Agriculture and Agri-Food Canada, Ottawa, ON, Canada, Jack K Okamuro, USDA ARS, Beltsville, MD, Ben Boroughs, NAMA, TBA, DC, Luiz Federizzi, UFRGS, TBA, Brazil, A Bruce Roskens, Grain Millers, Inc, Naperville, IL, Pamela Zwer, SARDI, TBA, Australia and Jim Dyck, Oat Advantage, TBA, SK, Canada P0683: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Comparative Mapping to Develop Markers in the Aegilops sharonensis Gametocidal Introgression

Surbhi Mehra1, Emilie Knight2, Graham Moore2, Julie King3 and Ian P King4, (1)The University of Nottingham, Loughborough, United Kingdom, (2)John Innes Centre, Norwich, United Kingdom, (3)The University of Nottingham, Leicestershire, United Kingdom, (4)University of Nottingham, Leicestershire, United Kingdom

P0684: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Mining New Diversity for Wheat Through the Introgression of Related Wild and Cultivated Grass Species

Csilla Nemeth1, Ian P King1 and Julie King2, (1)University of Nottingham, Leicestershire, United Kingdom, (2)The University of Nottingham, Leicestershire, United Kingdom P0685: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Establishment of Growth Scale in Brachypodium distachyon

Yoshihiko Onda, Kei Hashimoto, Takuhiro Yoshida, Tetsuya Sakurai, Yuji Sawada, Masami Yokota Hirai, Kiminori Toyooka, Keiichi Mochida and Kazuo Shinozaki, RIKEN CSRS, Yokohama, Japan P0686: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even High-Throughput Phenotyping of Brachypodium distachyon Under Progressive Drought and Heat Stress

Malia Gehan, Noah Fahlgren, Tracy Hummel, Stephanie Turnipseed and Todd Mockler, Donald Danforth Plant Science Center, St Louis, MO

P0687: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Arabidopsis Lost Its Sister: Why Brachypodium Is a Better Model to Study PIN-Mediated Auxin Transport in the Shoot

Devin O'Connor, Sainsbury Laboratory, Cambridge University, Cambridge, United Kingdom and Ottoline Leyser, Sainsbury Laboratory Cambridge University, Cambridge, United Kingdom P0688: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even LegumeIP - An Integrative Platform to Study Gene Function and Genome Evolution in Legumes: Year 3 Update

Jun Li, Xinbin Dai and Patrick Xuechun Zhao, The Samuel Roberts Noble Foundation, Ardmore, OK P0689: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Structure in the USDA Soybean Germplasm Collection

Katy Martin Rainey, William Muir and Alencar Xavier, Purdue University, West Lafayette, IN

259

P0690: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Mining Plant Collections Using Phenotyping and High-Throughput Sequencing for Accelerated Crop Improvement - A Case Study of the Native American Bean Apios americana

Vikas Belamkar1, Nathan T Weeks2, Andrew D Farmer3, Scott R Kalberer2, Jugpreet Singh4, Alex Wenger5, V Gautam Bhattacharya6, William J Blackmon7 and Steven B Cannon2, (1)Iowa State University, Ames, IA, (2)USDA-ARS-CICGRU, Ames, IA, (3)National Center for Genome Resources, Santa Fe, NM, (4)ORISE Fellow, USDA-ARS-CICGRU, Ames, IA, (5)Independent Researcher, Lititz, PA, (6)Independent Researcher, Ithaca, NY, (7)Independent Researcher, Mechanicsville, VA P0691: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd The cis-Golgi Gene, Syntaxin 31, induces the expression of LESION SIMULATING DISEASE1 (LSD1) which Functions in Glycine max Defense to the Root Parasite Heterodera glycines

Shankar R Pant1, Brant T McNeece1, Keshav Sharma1, Jiang Jian1, Prakash Niraula1, Aparna Krishnavajhala2, Gary W Lawrence2 and Vincent P Klink1, (1)Department of Biological Sciences, Starkville, MS, (2)Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Starkville, MS P0692: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even The Legume Non-Transgenic LORE1 Mutant Collection

Anna Malolepszy, Dorian F Urbanski, Niels Sandal, Terry Mun, Jens Stougaard and Stig U Andersen, Aarhus University, Aarhus, Denmark

P0693: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Tools for Phylogenomic Exploration within and Among Clade-Oriented Databases

Alan Cleary, NCGR, Santa Fe, NM, Longhui Ren, Iowa State University, Ames, IA, Steven B Cannon, USDA-ARS-CICGRU, Ames, IA and Andrew D Farmer, National Center for Genome Resources, Santa Fe, NM P0694: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Soybean Knowledge Base (SoyKB)

Shiyuan Chen, Jiaojiao Wang, Gary Stacey, Henry T Nguyen, Dong Xu and Trupti Joshi, University of Missouri, Columbia, MO P0695: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd What's New at SoyBase?

David Grant1, Rex T Nelson1, Kevin H Feeley1, Jacqueline D Farrell2, Sudhansu Dash2, Nathan Weeks1 and Steven B Cannon1, (1)USDA-ARS-CICGRU, Ames, IA, (2)Iowa State University, Ames, IA

P0696: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Large-Scale Next-Generation Resequencing of Soybean Germplasm for Trait Discovery

Yang Liu1, Saad M Khan1, Juexin Wang2, Shiyuan Chen2, Mats Rynge3, Joao V Maldonado dos Santos1, Babu Valliyodan4, Nirav Merchant5, Henry T Nguyen2, Dong Xu2 and Trupti Joshi2, (1)University of Missouri-Columbia, Columbia, MO, (2)University of Missouri, Columbia, MO, (3)Information Science Institute- University of Southern California, Marina del Rey, CA, (4)University of Missouri & National Center for Soybean Biotechnology, Columbia, MO, (5)iPlant Collaborative/University of Arizona, Tucson, AZ P0697: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd The Legume Information System (LegumeInfoorg) 2015

Steven B Cannon1, Andrew D Farmer2, Pooja E Umale3, Hrishikesh Lokhande4, Alan Cleary4, Nathan T Weeks1, Scott R Kalberer1, Ethalinda Cannon5, Sudhansu Dash6, Deepak Bitragunta5 and Jugpreet Singh7, (1)USDA-ARS-CICGRU, Ames, IA, (2)National Center for Genome Resources, Santa Fe, NM, (3)The National Center for Genome Resources, Santa Fe, NM, (4)NCGR, Santa Fe, NM, (5)Iowa State University, Ames, IA, (6)Virtual Reality Application Center, Ames, IA, (7)ORISE Fellow, USDA-ARS-CICGRU, Ames, IA P0698: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Scanning and Filling: Ultra-Dense SNP Genotyping in Soybean Combining GBS and Resequencing Data

Davoud Torkamaneh, University Laval, Canada, Quebec city, QC, Canada and François Belzile, Laval University, Québec, QC, Canada

P0699: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd SoyMap2: Investigating Genetic Diversity in Wild Relatives of Soybean

Jacqueline D Farrell1, Wei Huang1, Sudhansu Dash2, Eun-Young Hwang3, Namhee Jeong4, Brian Nadon5, Qijian Song6, Michelle A Graham7, Jane Grimwood8, Michael Gonzales5, Steven Cannon9, Jessica Schlueter10, Jianxin Ma11, Jeremy Schmutz8, Jeffrey J Doyle12, Perry Cregan6 and Scott A Jackson5, (1)Iowa State University, Ames, IA, (2)Virtual Reality Application Center, Ames, IA, (3)University of Maryland, College Park, MD, (4)Cornell University, Ithaca, NY, (5)University of Georgia, Athens, GA, (6)USDA-ARS, Soybean Genomics and Improvement Lab, Beltsville, MD, (7)USDA-ARS-CICGRU, Ames, IA, (8)HudsonAlpha Institute for Biotechnology, Huntsville, AL, (9)Iowa State University - USDA-ARS, Ames, IA, (10)University of North Carolina at Charlotte, Charlotte, NC, (11)Purdue University, West Lafayette, IN, (12)Plant Biology Department, Cornell University, Ithaca, NY P0700: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Exploring and Exploiting Seed Transcriptome Diversity in Soybean

Yong-Qiang Charles An, USDA-ARS, Plant Genetics Research at Donald Danforth Plant Science Center, Saint Louis, MO, Wolfgang Goettel, USDA-ARS Plant Genetics Research at Danforth Plant Science Center, Saint Louis, MO, Earl Taliercio, USDA-ARS, Soybean and Nitrogen Fixation Research, Raleigh, NC, Mingli Wang, USDA-ARS, PGRCU, Griffin, GA and Zongrang Liu, USDA-ARS, AFRS, Kearneysville, WV P0701: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Screening Fast-Neutron Soybean Lines for Seed Composition Traits

Austin A Dobbels, University of Minnesota, St Paul, MN

260

P0702: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even A Fine-Scale Map of Recombination and Hotspots By Re-Sequencing Recombinant Inbred Lines Approach in Soybean

Dan Qiu1, Babu Valliyodan1, Tri D Vuong1, Yanjun Li2, Peng Zeng2, Xiangyang Xu1, Chengxuan Chen2, Silvas J Prince1, Lu Dai2, Jiaying Huang2, Liang Zeng2, Ye Tao2, Grover Shannon3, Xin Liu2 and Henry T Nguyen1, (1)University of Missouri & National Center for Soybean Biotechnology, Columbia, MO, (2)Beijing Genomics Institute-Shenzhen, Shenzhen, China, (3)University of Missouri, Portageville, MO P0703: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd The Search for Functional Structural Variants and Adaptive Traits in Soybean

Justin E Anderson, University of Minnesota, St Paul, MN P0704: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Analysis of Recent Expansions of Select Retrotransposon Families in Soybean

Howard M Laten, Athena D Mascarenhas, Piotr W Weglarz and Mark V Albert, Loyola University Chicago, Chicago, IL

P0705: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Dt2 Is a Gain-of-Function MADS-Domain Factor Gene That Specifies Semideterminacy in Soybean

Jieqing Ping1, Yunfeng Liu1, Lianjun Sun1, Meixia Zhao1, Zhixi Tian2, Hanh Nguyen3, Yinghui Li4, Lijuan Qiu4, Randy Nelson5, Thomas E Clemente3, James E Specht3 and Jianxin Ma1, (1)Purdue University, West Lafayette, IN, (2)Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China, (3)University of Nebraska, Lincoln, NE, (4)Chinese Acdemy of Agricultural Sciences, Beijing, China, (5)USDA ARS, Urbana, IL P0706: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Construction and Evaluation of an EMS-Induced Mutant Library of Japanese Soybean Cultivar Enrei

Mai Tsuda1, Akito Kaga1, Toyoaki Anai2, Satoshi Watanabe1, Minoru Nishimura1, Naohiro Yamada3, Takashi Sayama1, Kyoko Takagi1, Takehiko Shimizu1, Kayo Machita1, Satomi Mori1, Harumi Sasaki1, Hiroyuki Kanamori1, Yuichi Katayose1 and Masao Ishimoto1, (1)NIAS, Ibaraki, Japan, (2)Saga University, Saga, Japan, (3)Nagano Vegetable and Ornamental Crops Experimental Station, Nagano, Japan P0707: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Genotype and Tissue-Specific Differences of DNA Methylation in Soybean

Kyung Do Kim1, Brian Abernathy1, Xin Zhou2, Marc Libault3, Jane Grimwood4, Blake C Meyers5 and Scott A Jackson1, (1)University of Georgia, Athens, GA, (2)Washington University in St Louis, St Louis, MO, (3)University of Oklahoma, Norman, OK, (4)HudsonAlpha Institute for Biotechnology, Huntsville, AL, (5)University of Delaware, Newark, DE

P0708: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even A Genome-Wide Association Analysis for Seed Oil and Protein on 13,000 Soybean Accessions

Nonoy Bandillo1, Diego Jarquin1, James E Specht2, Qijian Song3, Perry Cregan3 and Aaron Lorenz4, (1)University of Nebraska-Lincoln, Lincoln, NE, (2)University of Nebraska, Lincoln, NE, (3)USDA-ARS, Soybean Genomics and Improvement Lab, Beltsville, MD, (4)University of Nebraska–Lincoln, Lincoln, NE P0709: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Gene Expression Profiling for Seed Protein and Oil Synthesis during Early Seed Development in Soybean (Glycine max [L] Merr)

Young Eun Jang, Moon Young Kim, Jayern Lee, Sangrea Shim and Suk-Ha Lee, Seoul National University, Seoul, South Korea P0710: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Four New Soybean Sources Carrying Novel SACPD-C Alleles Containing High Level of Seed Stearic Acid and Conferring Resistance to Soybean Cyst Nematode

Naoufal Lakhssassi1, Shiming Liu1, Zhou Zhou1, Alaa Alaswad2 and Khalid Meksem1, (1)Department of Plant Soil and Agricultural Systems, SIUC, Carbondale, IL, (2)University of Missouri Columbia, Columbia, MO

P0711: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Quantitative Trait Loci Underlying Seed Sucrose, Raffinose and Stachyose Contents in the MD 96-5722 By Spencer Recombinant Inbred Line Population of Soybean

Abdelmajid Kassem1, Masum Akond2, Stella Kantartzi3, Khalid Meksem4, Nacer Bellaloui5 and David A Lightfoot3, (1)American University of Ras Al Khaimah, Ras Al Khaimah, United Arab Emirates, (2)Fayetteville State University, Fayetteville, NC, (3)Southern Illinois University, Carbondale, IL, (4)Department of Plant Soil and Agricultural Systems, SIUC, Carbondale, IL, (5)USDA-ARS, Stoneville, MS P0712: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Detection of the Genetic Factors Affecting the Number of Seeds per Pod in Soybean

Kunihiko Komatsu1, Takashi Sayama2, Ryoichi Yano2, Kenichiro Fujii2, Aya Hirose1, Masakazu Takahashi3 and Masao Ishimoto2, (1)NARO Hokkaido Agricultural Research Center, Sapporo, Japan, (2)National Institute of Agrobiological Sciences, Tsukuba, Japan, (3)NARO Kyushu Okinawa Agricultural Research Center, Kumamoto, Japan

261

P0713: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Identification of QTLs for Single Seed Weight and Their Relationships to Other Seed Yield Components in Soybean

Kenichiro Fujii1, Takashi Sayama1, Kyoko Takagi2, Kazumasa Kosuge3, Katsunori Okano3, Kunihiko Komatsu4, Naoya Yamaguchi5, Chika Suzuki6, Akito Kaga1 and Masao Ishimoto1, (1)National Institute of Agrobiological Sciences, Tsukuba, Japan, (2)NARO Agricultural Research Center, Tsukuba, Japan, (3)Ibaraki Agricultural Institute, Kasama, Ibaraki, Japan, (4)NARO Hokkaido Agricultural Research Center, Sapporo, Japan, (5)HRO Tokachi Agricultural Experiment Station, Kasai-gun, Hokkaido, Japan, (6)HRO Central Agricultural Experiment Station, Yubari-gun, Hokkaido, Japan P0714: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Effect of Row Spacing on Seed Isoflavone Contents in Soybean [Glycine max (L) Merr]

Abdelmajid Kassem1, Masum Akond2, Khalid Meksem3, Stella Kantartzi4 and David A Lightfoot4, (1)American University of Ras Al Khaimah, Ras Al Khaimah, United Arab Emirates, (2)Fayetteville State University, Fayetteville, NC, (3)Department of Plant Soil and Agricultural Systems, SIUC, Carbondale, IL, (4)Southern Illinois University, Carbondale, IL P0715: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd The Effect of Structural Variation at the I Locus on Regulation of Chalcone Synthase Short Interfering RNAs in Soybean

Young B Cho and Lila Vodkin, University of Illinois, Urbana, IL

P0716: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Association Mapping of Total Leaf Carotenoids Based on Three Measurement Approaches in Diverse [Glycine max (L) Merr] Soybean Genotypes

Arun Prabhu Dhanapal1, Jeffery D Ray2, Shardendu K Singh3, Valerio Hoyos-Villegas4, James R Smith2, C Andy King5, Larry C Purcell5 and Felix B Fritschi1, (1)University of Missouri, Columbia, MO, (2)USDA-ARS, Stoneville, MS, (3)USDA-ARS Beltsville, Beltsville, MD, (4)Michigan State University, East Lansing, MI, (5)University of Arkansas, Fayetteville, AR P0717: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Genome-Wide Structural Profiling and Bulk Segregant Sequencing Resolve a NAP1 Mutation Underlying a Short Trichome Phenotype in Soybean

Benjamin W Campbell1, Suma Sreekanta1, Fengli Fu2, Thomas Y Kono3, Gary J Muehlbauer4 and Robert M Stupar2, (1)Department of Agronomy & Plant Genetics, University of Minnesota, St Paul, MN, (2)Department of Agronomy and Plant Genetics, University of Minnesota, St Paul, MN, (3)University of Minnesota, Department of Agronomy, St Paul, MN, (4)Department of Plant Biology, University of Minnesota, St Paul, MN P0718: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even microRNA Regulation of Auxin-Cytokinin Balance during Soybean Nodule Development

Senthil Subramanian, Narasimha R Nizampatnam, Spencer Schreier and Suresh Damodaran, South Dakota State University, Brookings, SD

P0719: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Transcriptomics-Assisted Discovery of Hormone Regulation during Nodule Development in Soybean

Sajag Adhikari, Suresh Damodaran and Senthil Subramanian, South Dakota State University, Brookings, SD P0720: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Peptide Binding By Alloproteins and Mutants of a Receptor Like Kinase in Soybean

David A Lightfoot1, Ayan Malakar2 and Ravi Rajwanshi2, (1)Southern Illinois University, Carbondale, IL, (2)SIUC, Carbondale, IL P0721: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Virus Induced Gene Silencing of Candidate Genes in the Iron-Efficiency Response of Soybean

Adrienne N Moran Lauter1, Steven A Whitham2 and Michelle A Graham1, (1)USDA-ARS-CICGRU, Ames, IA, (2)Iowa State University, Ames, IA

P0722: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even A Genome-Wide Comparison of Structural Variation Following Mutagenesis, Genetic Transformation and Tissue Culture Treatments in Soybean

Justin E Anderson1, Jean-Michel Michno1, Adrian O Stec2 and Robert M Stupar3, (1)University of Minnesota, St Paul, MN, (2)University of Minnesota, Saint Paul, MN, (3)Department of Agronomy and Plant Genetics, University of Minnesota, St Paul, MN P0723: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Spectral Images Analyses to Assay Soybean Response to Abiotic Stress

Jin-Won Kim, Tae-Young Lee, Gyoungju Nah and Do-Soon Kim, Seoul National University, Seoul, South Korea P0724: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Genome-Wide Identification and Characterization of the Soybean Mate Family and Analysis of Their Expression in Response to Aluminum Stress

Juge Liu, Yang Li, Junyi Gai and Yan Li, National Center for Soybean Improvement, Nanjing Agricultural University, Nanjing, China

262

P0725: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Soybean Ethylene Biosynthesis and Signaling: An in silico Approach and the Importance in Drought Stress

Maria Fatima Grossi de Sa, Embrapa Genetic Resources and Biotechnology, Brasília, Brazil, Maria EL Sa, Agriculture and Livestock Enterprise of Minas Gerais State, Brasilia -DF, Brazil, Fabricio BM Arraes, UFRGS, Porto Alegre, Brazil and Magda A Beneventi, Embrapa Genetic Resources and Biotechnology, Brasilia -DF, Brazil P0726: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Hyper-Polymorphism Around Resistance Loci of Soybean

David A Lightfoot1, Melody Naghmeh Hemmati2, Oleksandra Zatserklyana2 and Ali Srour2, (1)Southern Illinois University, Carbondale, IL, (2)SIUC, Carbondale, IL P0727: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Quantitative Trait Loci Mapping of Soybean Response to Elevated Ozone

Christopher M Montes1, Jeffrey A Skoneczka2, Randy Nelson2 and Elizabeth A Ainsworth2, (1)University of Illinois at Urbana-Champaign, Urbana, IL, (2)USDA ARS, Urbana, IL

P0728: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Fine Mapping Rpp6, a Valuable Soybean (Glycine max L Merr) Rust Resistance Gene for the Southeastern USA

Zachary Raymond King, University of Georgia, Athens, GA P0729: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Polymorphisms at a Multi-Genic Multi-Pathogen Resistance Locus in Soybean

David A Lightfoot, Southern Illinois University, Carbondale, IL and Melody Naghmeh Hemmati, SIUC, Carbondale, IL P0730: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Fine Mapping of Candidate Gene(s) That Controls the Resistance of Frogeye Leaf Spot Disease in Soybean

Anh Pham1, Donna K Harris2, James Buck3, Jonathan Serrano2, Hussein A Abdel-Haleem2, Perry Cregan4, Qijian Song4, Roger Boerma1 and Zenglu Li1, (1)Institute of Plant Breeding, Genetics, and Genomics, University of Georgia, Athens, GA, (2)University of Georgia, Athens, GA, (3)University of Georgia, Griffin, GA, (4)USDA-ARS, Soybean Genomics and Improvement Lab, Beltsville, MD

P0731: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Identifying New Sources of Resistance to Brown Stem Rot in Soybean

Chantal E McCabe1, Silvia Cianzio1 and Michelle A Graham2, (1)Iowa State University, Ames, IA, (2)USDA-ARS-CICGRU, Ames, IA P0732: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Four New Soybean Sources Carrying Novel SACPD-C Alleles Containing High Level of Seed Stearic Acid and Conferring Resistance to Soybean Cyst Nematode

Naoufal Lakhssassi1, Shiming Liu1, Zhou Zhou1, Alaa Alaswad2 and Khalid Meksem1, (1)Department of Plant Soil and Agricultural Systems, SIUC, Carbondale, IL, (2)University of Missouri Columbia, Columbia, MO P0733: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd SNP Identification By Next Generation Sequencing of the Soybean Targeted Genome Segment for High-Throughput Selection of Soybean Cyst Nematode Resistance

Shiming Liu1, Naoufal Lakhssassi1, Johannes Dapprich2, Bjorn Rotter3 and Khalid Meksem1, (1)Department of Plant Soil and Agricultural Systems, SIUC, Carbondale, IL, (2)Generation Biotech, Lawrenceville, NJ, (3)GenXPro-GmbH, Frankfurt am Main, Germany

P0734: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Genetic, Genomic, and Gene Expression Analyses of Soybean Aphid Resistance Genes

Dechun Wang1, Jiazheng Yuan1, Zixiang Wen1, Rick Meyer2, Carmille Bales1, Cuihua Gu1 and Yong-Qiang Charles An3, (1)Michigan State University, East Lansing, MI, (2)USDA-ARS, Plant Genetics Research Unit at Donald Danforth Plant Sciences Center, St Louis, MO, (3)USDA-ARS, Plant Genetics Research at Donald Danforth Plant Science Center, Saint Louis, MO P0735: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Integrating Quantitative Trait Loci (QTL) from Many Studies: Approaches from Soybean, Common Bean, and Peanut

Jugpreet Singh1, Scott R Kalberer2, Robert Baker2, Ethalinda Cannon3, Sudhansu Dash4, Andrew D Farmer5, Kevin H Feeley2, Rex Nelson6, David Grant7 and Steven B Cannon2, (1)USDA-ARS, Ames, IA, (2)USDA-ARS-CICGRU, Ames, IA, (3)Iowa State University, Ames, IA, (4)Virtual Reality Application Center, Ames, IA, (5)National Center for Genome Resources, Santa Fe, NM, (6)USDA-ARS CICGRU, Ames, IA, (7)USDA-ARS-CICGRU and Iowa State University, Ames, IA P0736: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Lineage-Specific Gene Family Expansions of Legume Signaling Peptides

Diana Trujillo, University of Minnesota, Saint Paul, MN, Kevin AT Silverstein, Supercomputing Institute, University of Minnesota, Minneapolis, MN, Joann Mudge, National Center for Genome Resources (NCGR), Santa Fe, NM and Nevin D Young, Department of Plant Pathology, University of Minnesota, St Paul, MN

263

P0737: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd PeanutBase: A Resource for Peanut Genetic, Genomic, and Trait Information

Sudhansu Dash1, Ethalinda Cannon1, Scott R Kalberer2, Jugpreet Singh3, Deepak Bitragunta1, Longhui Ren1, Wei Huang1, Nathan T Weeks2, Julie Dickerson4, Andrew D Farmer5 and Steven B Cannon2, (1)Iowa State University, Ames, IA, (2)USDA-ARS-CICGRU, Ames, IA, (3)ORISE Fellow, USDA-ARS-CICGRU, Ames, IA, (4)National Science Foundation, Arlington, VA, (5)National Center for Genome Resources, Santa Fe, NM P0738: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Comparing Genome-Guided Assembly and Phased Variants Based Assembly Approach to Separate the Homoeolog Transcripts in Tetraploid Peanut (Arachis hypogaea L)

Ratan Chopra, Texas Tech University, Lubbock, TX, Mark D Burow, Texas A&M AgriLife Research, Lubbock, TX and Gloria Burow, USDA-ARS, Lubbock, TX P0739: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd DArT/DArTseq Based Genetic Maps for Identification of Genomic Regions Controlling Oil Content, Fatty Acids and Fresh Seed Dormancy in Peanut (Arachis hypogea L)

Manish K Vishwakarma1, Yaduru Shasidhar1, Manish K Pandey1, Pasupuleti Janila1, Surendra S Manohar1, Shyam N Nigam1, Hari D Upadhyaya1, Baozhu Guo2 and Rajeev K Varshney1, (1)ICRISAT, Hyderabad, India, (2)USDA-ARS, Crop Protection and Management Research Unit, Tifton, GA

P0740: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Molecular Marker Development and Germplasm Evaluation for Cultivated Peanut (Arachis hypogaea L)

Ze Peng1, Maria Gallo2, Diane Rowland1, Barry Tillman1 and Jianping Wang3, (1)University of Florida, Gainesville, FL, (2)University of Hawaii, Honolulu, HI, (3)Agronomy Department, University of Florida, Gainesville, FL P0741: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Retroelements of Arachis duranensis (AA) and A ipaënsis (BB) Genomes and their Distribution in Peanut Chromosomes

Bruna S Vidigal1, David Bertioli2, Igor Bacon Carvalho3, Eliza Nascimento2, Patricia Messenberg Guimarães4, Soraya C M Leal-Bertioli5, Ana C M Brasileiro6, Marcio de Carvalho Moretzsohn5 and Ana Claudia Guerra Araujo7, (1)Embrapa Genetic Reserach and Biotechnology, brasilia, Brazil, (2)University of Brasilia, Brasilia, Brazil, (3)University of Brasilia, brasilia, Brazil, (4)Cenargen-EMBRAPA, Brasilia, Brazil, (5)Embrapa Genetic Resources&Biotech, Brasilia, Brazil, (6)EMBRAPA Recursos Genéticos e Biotecnologia, Brasília, Brazil, (7)EMBRAPA, Brasilia, Brazil P0742: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Deploying Genomic Selection for Improving Complex Traits in Peanut (Arachis hypogea L)

Manish K Pandey1, Hari D Upadhyaya1, Abhishek Rathore1, Pasupuleti Janila1, Roma R Das1, Pawan Khera1, Xuanqiang Liang2, Baozhu Guo3 and Rajeev K Varshney1, (1)ICRISAT, Hyderabad, India, (2)Crop Research Institute, Guangzhou, China, (3)USDA-ARS, Crop Protection and Management Research Unit, Tifton, GA

P0743: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Genes Involved in Drought Stress Response and Tolerance in Wild Peanut Relatives

Patricia Messenberg Guimarães, Cenargen-EMBRAPA, Brasilia, Brazil, Carolina Morgante, EMBRAPA, Campina Grande, Brazil, Ana Claudia Guerra Araujo, EMBRAPA, Brasilia, Brazil, Soraya C M Leal-Bertioli, Embrapa Genetic Resources&Biotech, Brasilia, Brazil, Orzenil Bonfim Silva-Junior, EMBRAPA Gen Res Biotech & Catholic University Brasilia, Brasilia, Brazil, Roberto C Togawa, EMBRAPA - Brazilian Agricultural Research Corporation, Brasilia, Brazil, David Bertioli, University of Brasilia, Brasilia, Brazil and Ana C M Brasileiro, EMBRAPA Recursos Genéticos e Biotecnologia, Brasília, Brazil P0744: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even First Report of the Construction of a Genetic Linkage Map of Pea Using Genotyping By Sequencing

Yu Ma1, William L Holdsworth2, Peng Cheng1, Michael Mazourek2, Clarice J Coyne3, Dorrie Main1 and Rebecca McGee1, (1)Washington State University, Pullman, WA, (2)Cornell University, Ithaca, NY, (3)USDA ARS, Pullman, WA P0745: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Genomic Insight into the Breeding of Edible Podded Beans in a Snap

John Hart1, Phillip Griffiths2, Michael Mazourek3, Timothy Porch1, Michael A Gore3 and Jim Myers4, (1)USDA-ARS Tropical Agriculture Research Station, Mayaguez, PR, (2)Cornell University, Geneva, NY, (3)Cornell University, Ithaca, NY, (4)Oregon State University, Corvallis, OR

P0746: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Genome of Mesoamerican Common Bean - An Additional Resource for the Legume Genomics

Anna Vlasova1, Martha Rendón-Anaya2, Salvador J Capella Gutierrez1, Miguel Hernandez Oñate2, Andre E Minoche1, Ionas Erb1, Francisco Câmara Ferreira1, Pablo Prieto Barja1, André Corvelo3, Walter Sanseverino4, Gastón Westergaard5, Juliane C Dohm1, Gerogios Pappas6, Soledad Saburido Álvarez2, Darek Kedra1, Irene Gonzalez1, Luca Cozzuto1, Maria A Aguilar Moron1, Nuria Andreu1, O Mario Aguilar7, Jordi Garcia-Mas8, Maik Zehnsdorf1, Martín P Vázquez5, Alfonso Delgado-Salinas9, Luis Delaye10, Ernesto Lowy1, Alejandro Mentaberry11, Rosana P Vianello-Brondani12, José Luís García13, Tyler Alioto3, Federico Sanchez14, Heinz Himmelbauer1, Marta Santalla15, Cedric Notredame1, Toni Gabaldon1, Roderic Guigo1 and Alfredo Herrera-Estrella2, (1)Center for Genomic Regulation, Barcelona, Spain, (2)Laboratorio Nacional de Genómica para la Biodiversidad, Centro de Investigación y de Estudios Avanzados del IPN (Cinvestav), Irapuato, Mexico, (3)Centro Nacional de Análisis Genómico, Barcelona, Spain, (4)CRAG (CSIC-IRTA-UAB-UB), Cerdanyola del Vallés (Barcelona), Spain, (5)Instituto de Agrobiotecnología Rosario (INDEAR), Santa Fe, Argentina, (6)Universidade de Brasilia, Brasília - DF, Brazil, (7)Instituto de Biotecnología y Biología Molecular (IBBM), La Plata, Argentina, (8)CRAG (CSIC-IRTA-UAB-UB), bellaterra (Cerdanyola del Vallès), Spain, (9)Departamento de Botánica, Instituto de Biología, Universidad Nacional Autónoma de México, Mexico City, Mexico, (10)Departamento de Ingeniería Genética, Cinvestav Unidad Irapuato, Irapuato, Mexico, (11)Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires (UBA), Buenos Aires, Argentina, (12)EMBRAPA Rice and Beans, Biotechnology Laboratory, Santo Antônio de Goiás, Brazil, (13)Environmental Biology Department, Centro de Investigaciones Biológicas, (CSIC), Madrid, Spain, (14)Cuernevaca, Cuernavaca, Mexico, (15)Misión Biológica de Galicia, Pontevedra, Spain

264

P0747: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Genome Sequence of Adzuki Bean, Vigna angularis

Yang Jae Kang1, Suk-Ha Lee1 and Dani Satyawan2, (1)Seoul National University, Seoul, South Korea, (2)Seoul National University, South Korea, Seoul, South Korea P0748: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Genome Sequencing of 15 Phaseolus vulgaris Genotypes in the African Bean Consortium Disease Resistance Breeding Program

Tamara Iva Miller, UC Davis, Davis, CA P0749: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Single Molecule, Real-Time Sequencing of the Genomes of Genus Vigna

Hiroaki Sakai1, Ken Naito1, Kazuhito Satou2, Kuniko Teruya2, Eri Ogiso-Tanaka1, Akito Kaga1, Takeshi Itoh1, Takashi Hirano2 and Norihiko Tomooka1, (1)National Institute of Agrobiological Sciences, Tsukuba, Japan, (2)Okinawa Institute of Advanced Sciences, Okinawa, Japan

P0750: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Genomic Signatures of Common Bean Domestication and Phaseolus Inter-Species Introgression

Martha Rendón-Anaya1, Anna Vlasova2, Salvador J Capella Gutierrez2, Ionas Erb2, Pablo Prieto Barja2, Soledad Saburido Álvarez1, Luca Cozzuto2, Heinz Himmelbauer2, Cedric Notredame2, Toni Gabaldon2, Roderic Guigo2, Alfonso Delgado-Salinas3, Luis Delaye4 and Alfredo Herrera-Estrella1, (1)Laboratorio Nacional de Genómica para la Biodiversidad, Centro de Investigación y de Estudios Avanzados del IPN (Cinvestav), Irapuato, Mexico, (2)Center for Genomic Regulation, Barcelona, Spain, (3)Departamento de Botánica, Instituto de Biología, Universidad Nacional Autónoma de México, Mexico City, Mexico, (4)Departamento de Ingeniería Genética, Cinvestav Unidad Irapuato, Irapuato, Mexico P0751: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Next Generation Sequencing Identifies Regions of Introgression and Differentially Expressed Genes for Sclerotinia Resistance in Common Bean

Sujan Mamidi1, Samira Mafi Moghaddam1, Rian Lee1, Jim Myers2, Phillip Miklas3 and Phillip McClean1, (1)Dept of Plant Sciences, North Dakota State University, Fargo, ND, (2)Oregon State University, Corvallis, OR, (3)USDA-ARS, Vegetable and Forage Crops Research Unit, Prosser, WA

P0752: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Modeling the Genetic and Environmental Factors Underlying Post-Anthesis Reproductive Development in the Common Bean (Phaseolus vulgaris L)

Jose Alejandro Clavijo1, Salvador Gezan1, Mellissa Pissaroglo1, Mehul Bhakta2, Kenneth Boote3, James Jones4, Li Zhang4, Melanie Correll4, Abiezer Gonzalez5, James Beaver6, Stephen E Beebe7, Idupulapati Rao8, Juan Osorno9, Raphael Colbert10, Jaumer Ricaurte11, Elvin Roman-Paoli6 and Carlos Eduardo Vallejos1, (1)University of Florida, Gainesville, FL, (2)Dept Horticultural Sciences, University of Florida, Gainesville, FL, (3)Agronomy Department, University of Florida, Gainesville, FL, (4)Dept Agri and Biol Engg, University of Florida, Gainesville, FL, (5)University of Puerto Rico, Moca, PR, (6)University of Puerto Rico, Mayaguez, PR, (7)CIAT-International Center for Tropical Agriculture, Medley, FL, (8)CIAT, Cali, Colombia, (9)Plant Sciences - North Dakota State University, Fargo, ND, (10)North Dakota State University, Fargo, ND, (11)CIAT, Palmira, Colombia P0753: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd The Consequence of Domestication in the Common Bean

Elisa Bellucci1, Elena Bitocchi1, Alberto Ferrarini2, Andrea Benazzo3, Eleonora Biagetti1, Domenico Rau4, Monica Rodriguez4, Giovanna Attene4, Emidio Albertini5, Scott A Jackson6, Laura Nanni1, Alisdair R Fernie7, Zoran Nikoloski7, Giorgio Bertorelle3, Massimo Delledonne2 and Roberto Papa1, (1)Università Politecnica delle Marche, Ancona, Italy, (2)University of Verona, Verona, Italy, (3)Università degli Studi di Ferrara, Ferrara, Italy, (4)Università degli Studi di Sassari, Sassari, Italy, (5)University of Perugia, Perugia, Italy, (6)University of Georgia, Athens, GA, (7)Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany

P0754: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Characterization of Genetic Diversity and Climatic Selection in Wild Common Bean (Phaseolus vulgaris) Using Genotyping By Sequencing (GBS) Technology

Andrea Ariani, Jorge C Berny and Paul Gepts, University of California, Davis, CA P0755: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Discovering the Genetic Architecture of Dietary Fiber and Oligosaccharide Content in Common Bean (Phaseolus vulgaris )

Samira Mafi Moghaddam1, Dimas Echeverria2, Henry J Thompson2, Mark A Brick3, Leslie A Brick4, Sujan Mamidi1, Rian Lee1 and Phillip McClean1, (1)Dept of Plant Sciences, North Dakota State University, Fargo, ND, (2)Colorado State University, Fort Collins, CO, (3)Dept of Soil and Crop Sciences,Colorado State University, Fort Collins, CO, (4)Universtiy of Rhode Island, Kingston, RI P0756: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Comparison of Methylome Sequencing Using MeDIP-Seq and Sodium Bisulfite Sequencing in Common Bean (Phaseolus vulgaris)

Mollee C Crampton and Venu (Kal) Kalavacharla, Delaware State University, Dover, DE

265

P0757: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Use of Next Generation Sequencing for Transcriptomic Analysis of a Deletion Region Containing a Gene Responsible for Rust Resistance in Common Bean (Phaseolus vulgaris L)

Antonette Todd1, Nicole Donofrio2, Phillip McClean3, Rian Lee3 and Venu (Kal) Kalavacharla1, (1)Delaware State University, Dover, DE, (2)University of Delaware, Newark, DE, (3)Dept of Plant Sciences, North Dakota State University, Fargo, ND P0758: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Association Mapping of Angular Leaf Spot and Anthracnose Resistance Loci in Common Bean

Juliana Morini Kupper Cardoso Perseguini1, João Ricardo Bachega Feijó Rosa2, Sérgio Augusto Morais Carbonel3, Alisson Fernando Chiorato3, Antônio Augusto Franco Garcia4 and Luciana Lasry Benchimol-Reis1, (1)Research and Development Centre on Natural Genetic Plant Resources, The Agronomic Institute of Campinas (IAC), Campinas, Brazil, (2)Departamento de Genética, Escola Superior de Agricultura Luiz de Queiroz/ Universidade de São Paulo (USP-ESALq/USP), Piracicaba, Brazil, (3)Grain and Fiber Center, The Agronomic Institute of Campinas (IAC), Campinas, Brazil, (4)Departamento de Genética/ESALQ/USP, Piracicaba - SP, Brazil

P0759: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Genome-Wide Screening for Epigenome Modifications and Transcriptome Regulation during Rust Pathogen, Uromyces appendiculatus, Infection in Common Bean (Phaseolus vulgaris L)

Vasudevan Ayyappan1, Jyothi Thimmapuram2, Ketaki Bhide3, Antonette Todd1, Yaqoob Thurston4, Tomasz Smolinski1, Muthusamy Manoharan5, Bruce Kingham6 and Venu (Kal) Kalavacharla1, (1)Delaware State University, Dover, DE, (2)Purdue University, West Lafayette, IL, (3)Purdue University, West Lafayette, IN, (4)South Dakota State University, Brookings, SD, (5)University of Arkansan-PIne Bluff, Pine Bluff, AR, (6)University of Delaware-DBI, Newark, DE P0760: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Identifying Genomic Regions Controlling Plant Architectural Characteristics in Dry Bean (Phaseolus vulgaris L)

Ali Soltani1, Samira Mafi Moghaddam1, Juan Osorno2 and Phillip McClean1, (1)Dept of Plant Sciences, North Dakota State University, Fargo, ND, (2)Plant Sciences - North Dakota State University, Fargo, ND P0761: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd QTL Mapping on a Multiparent Advanced Generation Inter Cross (MAGIC) Population for Dry Bean Using Genotype By Sequencing (GBS)

Juan David Lobaton, CIAT, Cali, Colombia

P0762: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Elucidating the Regulation of Alternative Splicing in Mungbean (Vigna radiata)

Dani Satyawan, Seoul National University, South Korea, Seoul, South Korea and Suk-Ha Lee, Seoul National University, Seoul, South Korea P0763: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Using Genotyping-By-Sequencing to Identify and Annotate Single Nucleotide Polymorphisms in the ICARDA Lentil Reference Collection

Gopesh Saha1, Ping Zheng1, Dorrie Main1, Clare Coyne1, Shiv Kumar Agrawal2, Kirstin Bett3, Md Nurul Amin1 and Rebecca McGee1, (1)Washington State University, Pullman, WA, (2)ICARDA, Rabbat, Morocco, (3)University of Saskatchewan, Saskatoon, SK, Canada P0764: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even A Study of How Read Depth and Seedling Number Influence the Development of de novo Transcriptomes for Two Leucaena Species

Diana V Dugas1, Madhugiri Nageswara-Rao1, Richard Cronn2 and Donovan Bailey1, (1)New Mexico State University, Las Cruces, NM, (2)USDA Forest Service Pacific Northwest Research Station, Corvallis, OR

P0765: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Medicago Genome Assembly with Long-Read and Short-Read Sequencing

Jason R Miller1, Brian Walenz1, Li Song2, Peng Zhou3, Thiru Ramaraj4, Peter L Tiffin5, Joann Mudge6, Kevin AT Silverstein7 and Nevin D Young3, (1)J Craig Venter Institute, Rockville, MD, (2)Johns Hopkins University, Baltimore, MD, (3)Department of Plant Pathology, University of Minnesota, St Paul, MN, (4)National Center for Genome Resources, Santa Fe, NM, (5)Department of Plant Biology, University of Minnesota, Saint Paul, MN, (6)National Center for Genome Resources (NCGR), Santa Fe, NM, (7)Supercomputing Institute, University of Minnesota, Minneapolis, MN P0766: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Predication of Hybrid Performance Among USDA Alfalfa Core Collection Using AFLP Genetic Distances, Combining Ability Parameters and Physiological Parameters

Ali H Al Lawati, Oman Animal and Plant Genetic Resources Center, MUSCAT, Oman

266

P0767: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Progress in Sequencing the Genome of Tetraploid Alfalfa (Medicago sativa L)

Maria J Monteros1, Thiruvarangan Ramaraj2, Nicolas Devitt2, Connor T Cameron3, Arvind K Bharti4, Joann Mudge3, Andrew D Farmer2, Christy Motes1, Michael K Udvardi1 and E Charles Brummer5, (1)The Samuel Roberts Noble Foundation, Ardmore, OK, (2)National Center for Genome Resources, Santa Fe, NM, (3)National Center for Genome Resources (NCGR), Santa Fe, NM, (4)Syngenta, City, NM, (5)University of California, Davis, Davis, CAP0768: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Genome Wide Association Study Using Copy-Number Variants in Medicago truncatula

Joseph Guhlin1, Kevin AT Silverstein2, Peng Zhou1, Andrew D Farmer3, Peter L Tiffin4 and Nevin D Young1, (1)Department of Plant Pathology, University of Minnesota, St Paul, MN, (2)Supercomputing Institute, University of Minnesota, Minneapolis, MN, (3)National Center for Genome Resources, Santa Fe, NM, (4)Department of Plant Biology, University of Minnesota, Saint Paul, MN P0769: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Molecular Diversity and Population Structure of Worldwide Collection of Cultivated Tetraploid Alfalfa (Medicago sativa subsp sativa L) Germplasm Revealed By Microsatellite Markers

Zan Wang, Institute of Animal Science- CAAS, Beijing, China

P0770: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Alternative Splicing Detection and Isoform Characterization in Medicago truncatula Species

Diego A Fajardo1, Maria Harrison2, Anitha Sundararajan3, Kishor K Bhattarai2, Joann Mudge4 and Nevin D Young5, (1)NCGR, Santa Fe, NM, (2)Boyce Thompson Institute for Plant Research, Ithaca, NY, (3)National Center for Genome Resources, Santa Fe, NM, (4)National Center for Genome Resources (NCGR), Santa Fe, NM, (5)Department of Plant Pathology, University of Minnesota, St Paul, MN P0771: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Multiple Medicago assemblies Enable Analysis of Large Gene Families on a Genome Scale

Peng Zhou1, Kevin AT Silverstein2, Jason R Miller3, Joann Mudge4, Robert M Stupar5, Peter L Tiffin6, Andrew D Farmer7, Joseph Guhlin1, Roxanne Denny1 and Nevin D Young1, (1)Department of Plant Pathology, University of Minnesota, St Paul, MN, (2)Supercomputing Institute, University of Minnesota, Minneapolis, MN, (3)J Craig Venter Institute, Rockville, MD, (4)National Center for Genome Resources (NCGR), Santa Fe, NM, (5)Department of Agronomy and Plant Genetics, University of Minnesota, St Paul, MN, (6)Department of Plant Biology, University of Minnesota, Saint Paul, MN, (7)National Center for Genome Resources, Santa Fe, NM

P0772: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even miR156 Controls Forage Yield and Other Traits in Alfalfa by Regulating SPL Genes

Abdelali Hannoufa1, Margaret Y Gruber2, Banyar Aung1, Khaled Omari1 and Lisa Amyot1, (1)Agriculture and Agri-Food Canada, London, ON, Canada, (2)Agriculture and Agri-Food Canada, Saskatoon, SK, Canada P0773: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Tissue-Specific Expression Profiles of Fiber Genes in the Root-Rot Resistant Perfect Variety of Alfalfa Show Preferences for Cellulose Production in the Stem

Yunchen Gong1, Jianfeng Zhang1, Jessica Yang1, Pauline Fung1, Pauline Wang1, Dario Bonetta2, Peter McCourt1, Ryan Austin1 and David Guttman1, (1)University of Toronto, Toronto, ON, Canada, (2)University of Ontario Institute of Technology, Oshawa, ON, Canada P0774: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even A Medicago truncatula Cytochrome p450 gene Plays a Role in Penetration Resistance Against Nonhost Pathogen Phakopsora pachyrhizi

Upinder S Gill, Shipra Mittal, Jin Nakashima, Yasuhiro Ishiga, Srinavasa R Uppalapati and Kirankumar S Mysore, The Samuel Roberts Noble Foundation, Ardmore, OK

P0775: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Plastome Organization and Sequence for the Mimosoid Legume Leucaena trichandra

David Hernandez1, Diana V Dugas1, Madhugiri Nageswara-Rao1, Shannon Straub2, Aaron Liston3, Joshua Trujillo1 and Donovan Bailey1, (1)New Mexico State University, Las Cruces, NM, (2)Hobart and William Smith Colleges, Geneva, NY, (3)Oregon State University, Corvallis, OR P0776: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even A Tale of Four Genomes: de novo Genome Sequencing of Allotetraploid White Clover (Trifolium repens L) and Its Progenitors

Andrew G Griffiths1, Roger Moraga1, Stig Uggerhoj Andersen2, Vikas Gupta2 and Anthony J Conner1, (1)AgResearch, Grasslands Research Centre, Palmerston North, New Zealand, (2)Aarhus University, Aarhus, Denmark P0777: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd The First Genetic Map for a Psoraleeae Legume: GBS Mapping of Tedera (Bituminaria bituminosa var albomarginata) Reveals Highly Conserved Synteny with Soybean

Matthew N Nelson1, Maria Pazos-Navarro1, Daniel Real2, Rust Turakulov3, Kirby Siemering3, Matthew Tinning3 and Jafar Jabbari3, (1)The University of Western Australia, Crawley, Australia, (2)Department of Agriculture and Food Western Australia, South Perth, Australia, (3)Australian Genome Research Facility, Parkville, Australia

267

P0778: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even CicArVarDB: Chickpea Variation Database

Dadakhalandar Doddamani1, Aamir W Khan1, Krishnamohan Katta1, Gaurav Agarwal1, Pradeep Ruperao2, David Edwards3 and Rajeev K Varshney1, (1)ICRISAT, Hyderabad, India, (2)University of Queensland, Brisbane, India, (3)University of Western Australia, Perth, Australia P0779: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Illumina TruSeq Synthetic Long-Read Sequence Enhances de novo Genome Assembly of Allotetraploid White Clover (Trifolium repens L)

Roger Moraga1, Andrew G Griffiths1 and Stig Uggerhoj Andersen2, (1)AgResearch, Grasslands Research Centre, Palmerston North, New Zealand, (2)Aarhus University, Aarhus, Denmark P0780: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Population Genetic Diversity of 1000 Wild Chickpea Accessions

Peter L Chang1, R Varma Penmetsa1, Sergey V Nuzhdin2, Eric J von Wettberg3 and Douglas R Cook1, (1)University of California, Davis, CA, (2)University of Southern California, Los Angeles, CA, (3)Florida International University, Miami, FL

P0781: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Whole Genome Re-Sequencing Reveals Genome Wide Variations Among Parental Lines of Mapping Populations in Chickpea

Mahendar Thudi, Aamir W Khan, Vinay Kumar, Manish Roorkiwal, Annapurna Chitikineni, Pooran M Gaur, Krishnamohan Katta, Vanika Garg and Rajeev K Varshney, ICRISAT, Hyderabad, India P0782: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Identification of Candidate Genes from a "QTL-Hotspot" Region for Drought Tolerance in Chickpea Using Whole Genome Resequencing Based Bin Mapping

Sandip M Kale1, Deepa Jaganathan1, Pradeep Ruperao2, Charles Chen3, Ramu Punna4, Himabindu Kudapa1, Mahendar Thudi1, Manish Roorkiwal1, Krishnamohan Katta1, P B Kavi Kishor5, Pooran M Gaur1, Jacqueline Batley6, David Edwards7, Tim Sutton8 and Rajeev K Varshney1, (1)ICRISAT, Hyderabad, India, (2)University of Queensland, Brisbane, Australia, (3)CIMMYT, Texcoco, Mexico, (4)Institute for Genomic Diversity, Cornell University, Ithaca, NY, (5)Osmania University, Hyderababd, India, (6)The University of Western Australia, Perth, WA, Australia, (7)University of Western Australia, Perth, Australia, (8)Australian Center for Plant Functional Genomics, Adelaide, Australia

P0783: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Re-Sequencing of 429 Lines for Understanding Drought and Heat Tolerance Mechanisms in Chickpea (Cicer arietinum L)

Manish Roorkiwal1, Xin Liu2, Anu Chitikineni1, Weiming He2, Hari D Upadhyaya1, Dadakhalandar Doddamani1, Jainbo Jian2, Abhishek Rathore1, Pooran M Gaur1, Wei Yang2, Sushil Chaturvedi3, Narendra P Singh3, Swapan K Datta4, Xu Xun2, Jun Wang2 and Rajeev K Varshney1, (1)ICRISAT, Hyderabad, India, (2)Beijing Genomics Institute (BGI), Shenzhen, China, (3)Indian Institute of Pulses Research, Kanpur, India, (4)ICAR, New Dehli, India P0784: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even A New SNP-Genotyping Resource for Cowpea and Its Deployment for Breeding

Timothy J Close1, Mitchell R Lucas1, Maria Muñoz-Amatriain1, Hamid Mirebrahim1, Steve Wanamaker1, Noelle A Barkley2, Savanah St Clair1, Yi-Ning Guo1, Sassoum Lo1, Bao Lam Huynh1, Arsenio Daniel Ndeve1, Jansen Rodrigo Pereira Santos1, Batieno T Benoît Joseph3, Tignegre Jean-Baptiste De La Salle4, Issa Drabo4, Francis Kusi5, Ibrahim Atokple5, Ousmane Boukar6, Christian Fatokun6, Ndiaga Cisse7, Pei Xu8, Philip A Roberts1 and Stefano Lonardi1, (1)University of California, Riverside, CA, (2)USDA-ARS, PGRCU, Griffin, GA, (3)West African centre for Crop Improvement, Legon, Ghana, (4)Institut de l'Environnement et de Recherches Agricoles, Saria, Burkina Faso, (5)CSIR-Savanna Agricultural Research Institute (CSIR-SARI), Tamale, Ghana, (6)International Institute of Tropical Agriculture, Ibadan, Nigeria, (7)Institut Senegalais de la Recherches Agricole, Bambey, Senegal, (8)Zhejiang Academy of Agricultural Sciences, Hangzhou, China

P0785: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Development of a High-Throughput Magnetic Bead DNA Isolation Protocol for Dry Cowpea Leaf Samples

Savanah M St Clair, Yi-Ning Guo, Jansen Rodrigo Pereira Santos, Sassoum Lo, Arsenio Daniel Ndeve, Mitchell R Lucas, Steve Wanamaker, Philip A Roberts and Timothy J Close, University of California, Riverside, CA P0786: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Identification and Introgression of Mozambican Cowpea Alleles to Breed California Blackeyes with Larger Seeds

Mitchell R Lucas1, Bao Lam Huynh2, Philip A Roberts1 and Timothy J Close1, (1)University of California, Riverside, CA, (2)University of California - Riverside, Riverside, CA P0787: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Sources of Resistance to Ashy Stem Blight Caused By Macrophomina phaseolina in the Cowpea Major Gene Pool Two

Arsenio Daniel Ndeve, University of California - Riverside, Riverside, CA

268

P0788: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Indel-Seq: A Fast Forward Genetic Approach for Identification of Candidate Genomic Regions, an Example in Pigeonpea (Cajanus cajan)

Vikas K Singh1, Aamir W Khan1, Hiroki Takagi2, Rachit K Saxena1, Vinay Kumar1, Mamta Sharma1, CV SameerKumar1, Pallavi Sinha1, Annapurna Chitikineni1, Suyash Patil1, Sandip M Kale1, Lekha T Pazhamala1, G Anuradha3, K N Yamini3, Swathi Parupalli1, V Suryanarayana1, Vanika Garg1, S Muniswamy4, PS Dharmaraj4, Ryohei Terauchi2 and Rajeev K Varshney1, (1)ICRISAT, Hyderabad, India, (2)Iwate Biotechnology Research Center, Kitakami, Iwate, Japan, (3)Acharaya NG Ranga Rao Agricultural University, Hyderabad, India, (4)University of Agricultural Sciences, ARS-Gulbarga, Raichur, India P0789: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Whole Genome Resequencing Reveals Genome Wide Variations Among Parental Lines of Mapping Populations in Pigeonpea

Vinay Kumar, Rachit K Saxena, Vikas K Singh, Aamir W Khan, Annapurna Chitikineni, CV SameerKumar and Rajeev K Varshney, ICRISAT, Hyderabad, India

P0790: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even Data Integration for the Plant Research Community: The Arabidopsis Information Portal

Chia-Yi Cheng1, Erik Ferlanti1, Vivek Krishnakumar1, Maria Kim1, Svetlana Karamycheva1, Benjamin D Rosen1, Matt Hanlon2, Steve Mock2, Joe Stubbs2, Walter Moreira2, Rion Dooley2, Sergio Contrino3, Julie Sullivan3, Alex Kalderimis3, Gos Micklem3, Jason R Miller1, Matt Vaughn2 and Christopher D Town1, (1)J Craig Venter Institute, Rockville, MD, (2)Texas Advanced Computing Center, Austin, TX, (3)Cambridge University, Cambridge, England P0791: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd Genomic Resources for Arabidopsis Research at NCBI

Anjana Raina Vatsan, Terence D Murphy, Valerie Schneider, Brian Smith-White, Tatiana Tatusova and Kim D Pruitt, National Center for Biotechnology Information (NCBI/NLM/NIH), Bethesda, MD P0792: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even Developing Content for the Arabidopsis Information Portal

Matt Vaughn1, Jason R Miller2, Erik Ferlanti2, Vivek Krishnakumar2, Maria Kim2, Svetlana Karamycheva2, Benjamin D Rosen2, Chia-Yi Cheng2, Matt Hanlon1, Steve Mock1, Joe Stubbs1, Rion Dooley1, Walter Moreira1, Sergio Contrino3, Julie Sullivan3, Alex Kalderimis3, Gos Micklem3 and Christopher D Town2, (1)Texas Advanced Computing Center, Austin, TX, (2)J Craig Venter Institute, Rockville, MD, (3)Cambridge University, Cambridge, England

P0793: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd The Arabidopsis Biological Resource Center and the Plant Antibody Facility: Providing Researchers with Simple and Efficient Access to Seed, DNA, and Antibody Resources

Diana Shin, Jelena Brkljacic, Debbie Crist, Luz Rivero and Erich Grotewold, The Arabidopsis Biological Resource Center, Plant Antibody Facility, Center for Applied Sciences, The Ohio State University, Columbus, OH P0794: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even HRGRN: A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks

Xinbin Dai, Jun Li, Tingsong Liu and Patrick Xuechun Zhao, The Samuel Roberts Noble Foundation, Ardmore, OK P0795: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd Meiosis in Brassica: From Model to Crop

Maria Cuacos, Kim Osman, Elaine C Howell, Chris Franklin and Susan Armstrong, University of Birmingham, Birmingham, United Kingdom

P0796: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even Dominance Hierarchy Arising from the Evolution of a Complex Small RNA Regulatory Network Brassicaceae

Helene Berges1, Vincent Castric2, William Marande3, Elisa Prat3, Eleonore Durand4, Raphael Meheust5, Marion Soucaze5, Sophie Gallina5, Celine Poux5, Isabelle Fobis-Loisy6, Thierry Gaude7, Alexis Sarazin8, Martin Figeac9, Xavier Vekemans5, Sylvain Billiard5, Eline Guillon10 and Pauline Goubet5, (1)Plant Genomic Center - INRA Toulouse, Castanet-Tolosan, France, (2)CNRS - Universite Lille 1, Villeneuve d'Ascq, France, (3)INRA - CNRGV, Castanet Tolosan, France, (4)Laboratoire Génétique et Evolution des Populations Végétales, CNRS UMR 8198, Université Lille1, Villeneuve d’Ascq cedex, France, (5)Laboratoire Génétique et Evolution des Populations Végétales, Villeneuve d’Ascq cedex, France, (6)Reproduction et Développement des Plantes, Institut Fédératif de Recherche 128, Centre National de la Recherche Scientifique, Institut National de la Recherche Agronomique, Université Claude Bernard Lyon I,, Lyon, France, (7)Reproduction et Développement des Plantes, Institut Fédératif de Recherche 128, Centre National de la Recherche Scientifique, Institut National de la Recherche Agronomique, Université Claude Bernard Lyon I, Lyon, France, (8)Department of Biology, Zurich, Switzerland, (9)Université de Lille2 and Plate-forme de génomique fonctionnelle et structurale, Lille, France, (10)Reproduction et Développement des Plantes, Institut Fédératif de Recherche 128,, Lyon, France

269

P0797: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd Frequent Parallel Loss of Bsister MADS-Box Genes in Brassicaceae Genomes

Annette Becker1, Lydia Gramzow2, Andrea Hoffmeier3, Amey S Bhide4, Olesia Gavryliuk4, Nina Kottenhagen3, Klaus Mummenhoff5 and Günter Theißen2, (1)Justus-Liebig-University Gießen, Gießen, Germany, (2)Friedrich Schiller University Jena, Jena, Germany, (3)Friedrich-Schiller-University, Jena, Germany, (4)Justus-Liebig-University, Gießen, Germany, (5)Osnabrueck University, Osnabrück, Germany P0798: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even Investigating Drought Stress Responses of Diverse Natural Variants of Brassica

Dianne Pater1, Jack L Mullen2, John McKay2 and Julian I Schroeder1, (1)University of California San Diego, La Jolla, CA, (2)Colorado State University, Fort Collins, CO

P0799: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd The Effect of Helium Plasma-Treatment during Pollination of Brassica Species

Moe Nabemoto1, Runa Ichinoseki2, Mayu Sato3, Chigusa Tanno4, Hiromi Masuko-Suzuki1, Satomi Sakazono1, Keita Suwabe5, Go Suzuki6, Yukihiro Ito1, Jun Hidema1, Kazunori Takahashi1, Akira Ando1 and Masao Watanabe1, (1)Tohoku University, Sendai, Japan, (2)Akita Prefectural Akita Minami Senior High School, Akita, Japan, (3)Yamagata Prefectural Yamagata Nishi Senior High School, Yamagata, Japan, (4)Miyagi Prefectural Sendai Nika Senior High School, Sendai, Japan, (5)Mie University, Tsu, Japan, (6)Osaka Kyoiku University, Kashiwara, Japan P0800: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even Comparative Transcriptome Analysis Between Pre- and Post-Pollination in Arabidposis thaliana

Tomoki Matsuda1, Mai Matsushima1, Moe Nabemoto2, Masaaki Osaka2, Satomi Sakazono2, Hiromi Masuko-Suzuki2, Mikako Sone2, Hirokazu Takahashi3, Mikio Nakazono3, Megumi Iwano4, Seiji Takayama4, Kentaro K Shimizu5, Kentaro Yano6, Go Suzuki7, Masao Watanabe2 and Keita Suwabe1, (1)Mie University, Tsu, Japan, (2)Tohoku University, Sendai, Japan, (3)Nagoya university, Nagoya, Japan, (4)Nara Institute of Science and Technology, Ikoma, Nara, Japan, (5)IEU, University Zurich, Zurich, Switzerland, (6)School of Agri, Meiji University, CREST, JST, Kawasaki, Japan, (7)Osaka Kyoiku University, Kashiwara, Japan

P0801: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd Establishment of Dynamic Imaging of Pollination in Arabidopsis thaliana

Mai Matsushima1, Mei Ando1, Tomoki Matsuda1, Moe Nabemoto2, Mikako Sone2, Kenichiro Hiroi2, Satomi Sakazono2, Hiromi Masuko-Suzuki2, Kentaro Yano3, Go Suzuki4, Masao Watanabe2 and Keita Suwabe1, (1)Mie University, Tsu, Japan, (2)Tohoku University, Sendai, Japan, (3)School of Agri, Meiji University, CREST, JST, Kawasaki, Japan, (4)Osaka Kyoiku University, Kashiwara, Japan P0802: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even An Investigation of the Interaction Between Two Phosphorylation Sites in a Splicing Activator SR451 in Arabidopsis thaliana

Yeon Joo Hong1, Vivian Lee1 and Xiao-Ning Zhang2, (1)St Bonaventure University, St Bonaventure, NY, (2)St Bonaventure University, St Bonaventure, NY P0803: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd Reconsidering Homeolog Silencing of Allopolyploid Gene Expressions in Arabidopsis

Satoru Akama, Tokyo Institute of Technology, Tokyo, Japan, Kentaro K Shimizu, IEU, University Zurich, Zurich, Switzerland, Rie Shimizu-Inatsugi, University of Zurich, Zurich, Switzerland and Jun Sese, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan

P0804: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even Arabidopsis MSH1 Mutation Alters the Epigenome and Produces Heritable Changes in Plant Growth

Kamaldeep S Virdi, University of Nebraska Lincoln, Lincoln, NE P0805: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd Investigation of the Regulation Mechanisms of Ion Channels in Arabidopsis Guard Cells

Yong-Fei Wang1, Li-Li Gu1, An Zhang2, Feng-Yong Yao2 and Yan-Qiu Tan2, (1)Shanghai Institute of Plant Physiology and Ecology, SIBS, CAS, Shanghai, China, (2)Shanghai Institute of Plant Physiology & Ecology, SIBS, CAS, Shanghai, China P0806: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even Environmental Regulation of Plant Stomatal Development By Cell Fate Morphogens in Arabidopsis thaliana

Cawas Engineer, University of California San Diego, San Diego, CA, Wouter-Jan Rappel, University of California San Diego, La Jolla, CA, Tak Lee, Yonsei University, Seoul, South Korea, Insuk Lee, Yonsei University, Korea, Seoul, South Korea, Seung Yon Rhee, Carnegie Institution for Science, Stanford, CA and Julian I Schroeder, University of California San Diego, La jolla, CA

270

P0807: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd T-DNA Insertion Lines with Altered Root System Architecture in Arabidopsis thaliana

Kianoush Nikoumanesh1, Brian Jones2 and Jennifer A Saleeba1, (1)University of Sydney, Sydney, Australia, (2)The University of Sydney, Sydney, Australia P0808: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even Expression Profiling of the Arabidopsis UCP Gene Family Under Abiotic and Biotic Stress

Alessandra Vasconcellos Nunes, Juliana Pereira Bravo and Ivan G Maia, IB - UNESP - Department of Genetics, Botucatu, Brazil P0809: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd Influence of Magnesium Supply on the Root Development of Arabidopsis thaliana

Christian RM Hermans, Université Libre de Bruxelles, Lab of Plant Physiology and Molecular Genetics, Brussels, Belgium, Qiying Xiao, Université Libre de Bruxelles, Laboratory of Plant Physiology and Molecular Genetics, Brussels, Belgium and Nathalie Verbruggen, Université Libre de Bruxelles, Lab Plant Physiology and Molecular Genetics, Brussels, Belgium P0810: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even Folic Acid Plays a Critical Role in Nonhost Resistance

Madan K Bhattacharyya, Iowa State University, Ames, IA

P0811: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd Genetic and Biochemical Characterization of AIN3 in Plant Immunity

Yi Liu, Horticulture department, Virginia Tech, Blacksburg, VA and Bingyu Zhao, Virginia Tech, Blacksburg, VA P0812: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even Arabidopsis PYL8 gene Plays a Role in Drought Tolerance

Han Yong Lee1, Tae Young Um1, Chanseok Shin2 and Yang Do Choi1, (1)Department of Agricultural Biotechnology Seoul National University, Seoul, South Korea, (2)Seoul National University, Seoul, South Korea P0813: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd Omics-Directed Reverse Genetics Enables the Creation of Improved Productivity Traits in Canola

Bart Lambert, Bayer Cropscience NV, Gent, Belgium P0814: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even Deciphering the Diploid Ancestral Genome of the Mesohexaploid Brassica rapa

Feng Cheng1, Terezie Mandakova2, Xiaowu Wang1 and Martin A Lysak2, (1)Institute of Vegetables and Flowers, Beijing, China, (2)CEITEC, Masaryk University, Brno, Czech Republic

P0815: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd Patterns of Evolutionary Conservation of Ascorbic Acid-Related Genes Following Whole-Genome Triplication in Brassica rapa

Weike Duan, College of Horticulture-Nanjing Agricultural College, Nanjing, China P0816: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even Assessing and Validating the Amphidiploid Genome of Brassica napus Using Genotyping By Sequencing

Philipp Emanuel Bayer, University of Queensland, Brisbane, Australia P0817: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd Systems Genetics of Crowding Tolerance in Brassica rapa

Cody Markelz1, Upendra Kumar Devisetty1, Michael Covington2 and Julin N Maloof3, (1)University of California, Davis, CA, (2)University of California Davis, Davis, CA, (3)University of California, Davis, DAVIS, CA P0818: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even Homeologous Non-Reciprocal Translocations (HNRT) Induce Selectable Genetic Variation in Brassica napus

Birgit Samans1, Boulos Chalhoub2 and Rod Snowdon1, (1)Justus Liebig University, Giessen, Germany, (2)URGV-INRA, Evry, France

P0819: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd Using miRNA in Quantitative Trait Analysis - Brassica napus

Andrea Hatlen1, Geoffrey Wagner2, Birgit Samans2, Richard A Nichols1 and Rod Snowdon2, (1)Queen Mary University of London, London, United Kingdom, (2)Justus Liebig University, Giessen, Germany P0820: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even A Genome-Wide Association Study of Nitrogen Use Efficiency in Rapeseed (Brassica napus)

Feng Li1, Hiroyasu Kitashiba2, Takeshi Nishio2 and Xiaoming Wu3, (1)Oil Crops Research Institute,CAAS, Sendai, Japan, (2)Graduate School of Agricultural Science, Tohoku University, Sendai, Japan, (3)Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan, China P0821: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd Genome-Wide Association Study of the Complex Traits in Amphidiploid Rapeseed (Brassica napus L)

Xiaoming Wu, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan, China and Feng Li, Oil Crop Research Institute, Chinese Academy of Agricultural Sciences, Wuhan, China

271

P0822: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even Development of New Oilseed Rape (Brassica napus) Variety with Increasing Oleic Acid Content Using Molecular Markers

Mi-So Jang, Fungi and Plants Co,Ltd, Chungcheongbuk-do, South Korea, Soonbong Lee, Fungi and Plants Co,Ltd, Chungcheonbuk-do, South Korea, Kil-Young Yun, Fungi and Plants Co,Ltd, Chungcheongbuk, South Korea and Shinje Kim, Fungi and Plants Co,Ltd, Chungcheongbuk-do, South Korea P0823: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd QTL Analysis for Erucic Acid and Oleic Acid Content in Brassica napus Using F2 Population

Soonbong Lee1, Mi-So Jang2, Eun-Ji Jeon3, Kil-Young Yun4 and Shinje Kim3, (1)Fungi and Plants Co, Ltd, Chungcheonbuk-do, South Korea, (2)Fungi and Plants Co, Ltd, Chungcheongbuk-do, South Korea, (3)Fungi and Plants Co, Ltd, Chungcheongbuk-do, South Korea, (4)Fungi and Plants Co, Ltd, chungcheongbuk, South Korea P0824: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even Identification and Characterisation of Candidate Genes in Brassica napus Conferring Resistance to Blackleg Disease

Reece Tollenaere1, Salman Alamery2, Satomi Hayashi2, Philipp Emanuel Bayer2, David Edwards2 and Jacqueline Batley2, (1)University of Queensland, St Lucia, Australia, (2)University of Queensland, Brisbane, Australia

P0825: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd Isolation of the Genes Coding for Putative DNA Binding Proteins Differentially Regulated By Cold Treatment in Brassica napus

Sung-Il Lee1, Kwang-Soo Kim2, Young-Seok Jang2, Nam-Soo Kim1 and Kyong-Cheul Park1, (1)Kangwon National University, Chuncheon, South Korea, (2)Bioenergy Crop Research Center, Rural Development Administration, Muan, South Korea P0826: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even Development of Doubled Haploid Inbred Lines Using Microspore Culture in Radish (Raphanus sativus L)

Suhyoung Park1, Won Byoung Chae1 and Yong Pyo Lim2, (1)National Institute of Horticultural & Herbal Science, Suwon, South Korea, (2)Chungnam National University, Daejeon, South Korea P0827: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd On the Origin of B-like Chromosomes in Boechera (Brassicaceae)

Terezie Mandakova1, Christiane Kiefer2, Hans de Jong3, M Eric Schranz3 and Martin A Lysak1, (1)CEITEC, Masaryk University, Brno, Czech Republic, (2)Max Planck Institute for Plant Breeding Research, Cologne, Germany, (3)Wageningen University, Wageningen, Netherlands

P0828: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even Comparative Proteomic Analysis in Clubroot-Susceptible and Resistant Cabbage Inbred Lines

Jeong Mee Park, Korea Research Institute of Bioscience& Biotechnology, Daejeon, South Korea P0829: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd Develop Anthocyanin Synthesis Related Markers Based on RNA-Seq from Purple and Green Cabbage

Myeong-il Mun1, Yoon Kang Hur1 and Illsup Nou2, (1)Chungnam National University, Daejeon, South Korea, (2)Sunchon National University, Suncheon, South Korea P0831: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd Identification and Characterization of Genic Male Sterility-Related Genes from Chinese Cabbage

Xiangshu Dong and Yoon Kang Hur, Chungnam National University, Daejeon, South Korea P0832: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even Cap Binding Complex Proteins of Indian Mustard (Brassica juncea): Cloning, Characterization and Evaluation of their Role in Abiotic Stress Tolerance

Neha Lakhanpal and Kashmir Singh, Panjab University, Chandigarh, India

P0833: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd Genome Evolution and the Origin of Australian Crucifers

Terezie Mandakova, Milan Pouch, Klara Harmanova and Martin A Lysak, CEITEC, Masaryk University, Brno, Czech Republic P0834: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even Phylogenomic Analyses of 1-Aminocyclopropane-1-Carboxylate Synthase Genes and Their Role in Phenotypic Plasticity to Drought Stress

Abdelali Barakat1, Fernando Pasan1 and David Siemens2, (1)University of South Dakota, Vermillion, SD, (2)Black Hill State University, Spearfish, SD P0835: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd Towards an Anchored Reference Genome for Field Pennycress (Thlaspi arvense L)

Kevin M Dorn1, Evan B Johnson1, Donald L Wyse2 and M David Marks2, (1)University of Minnesota, St Paul, MN, (2)University of Minnesota, St Paul, MN P0836: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even A Transformative Platform Deciphers the RNA Structural Code in Living Cells

Yiliang Ding, John Innes Centre, Norwich, United Kingdom

272

P0837: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd Genome Wide Copy Number Variation in the Canine Genome

Maria T Haag1, Robert D Schnabel2 and Jeremy F Taylor2, (1)University of Missouri-Columbia, Columbia, MO, (2)Division of Animal Sciences, University of Missouri, Columbia, MO P0838: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even Large Dataset Analysis for Undergraduates: Discovery Environment, RNA-Seq and Leaf Senescence in Arabidopsis thaliana

Judy A Brusslan, California State University, Long Beach, Long Beach, CA P0839: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Odd Accessing SGN Genomes through Tools

Susan R Strickler, Boyce Thompson Institute for Plant Research, Ithaca, NY P0840: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even Genotyping-By-Sequencing of a Diploid Potato F2 Population

Jeffrey Endelman, University of Wisconsin Department of Horticulture, Madison, WI and Shelley Jansky, USDA-ARS, Madison, WI

P0841: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Odd Genome-Wide Association Studies for Autopolyploids - Potato

Umesh R Rosyara, University of Wisconsin-Madison, Madison, WI and Jeffrey Endelman, University of Wisconsin Department of Horticulture, Madison, WI P0842: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even Unraveling the Heterozygosity in Unique Structured Diploid Populations of Potato

C Robin Buell1, Emily Crisovan1, Joseph Coombs1, Yuehua Cui1, David Douches1, John Paul Hamilton1, Michael Hardigan1, Jiming Jiang2, Parker Laimbeer3, Xu Liu1, Norma C Manrique Carpintero1, Alexandre Marand2, Rachel Naegele1, Linsey Newton1, Gina Pham1, Kendall Upham3, Brieanne Vaillancourt1, Richard E Veilleux3, Honglang Wang1, Susan Wielgus2 and Zixian Zeng2, (1)Michigan State University, East Lansing, MI, (2)University of Wisconsin-Madison, Madison, WI, (3)Virginia Tech, Blacksburg, VA P0843: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Odd A Systems Biology Approach to Understanding Anthocyanin Biosynthesis and Regulation in Potato

Cory D Hirsch1, Rachael Hume2, Jason Cepela2, David Douches2, Nathan M Springer1 and C Robin Buell2, (1)University of Minnesota, Saint Paul, MN, (2)Michigan State University, East Lansing, MI

P0844: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even Targeted Sequencing and De Novo Assembly of a Highly Repetitive Gene Family with Long PacBio Reads of Inserts - Potato

Kamil Witek, Florian Jupe, Agnieszka I Witek and Jonathan DG Jones, The Sainsbury Laboratory, Norwich, United Kingdom P0845: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Odd Bulk Segregant RNA-Seq to Investigate the Production of Anthocyanins in Potato Corollas

Parker Laimbeer1, Andreas Doulis1, Brenda Peterson2 and Richard Veilleux1, (1)Virginia Tech - Department of Horticulture, Blacksburg, VA, (2)Virginia Tech - Department of Biological Sciences, Blacksburg, VA P0846: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even Identification and Characterization of Iron-Related Genes in Andean Potato Cultivars

Hua Xiao1, Tatiana Boluarte Medina1, Merideth Bonierbale2, Mark A Williams1 and Richard E Veilleux1, (1)Virginia Tech, Blacksburg, VA, (2)International Potato Center, Lima, Peru

P0847: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Odd Genome-Wide Association Study and Accuracy of Genomic Selection Models in Tomato F1 Varieties in Japan

Eiji Yamamoto1, Hiroshi Matsunaga1, Akinori Suzuki2, Mai Minamikawa2, Hiromi Kajiya-Kanegae2, Akio Onogi2, Tsukasa Nunome1, Hirotaka Yamaguchi1, Koji Miyatake1, Satomi Negoro1, Akio Ohyama1, Hiroyoshi Iwata2 and Hiroyuki Fukuoka1, (1)NARO Institute of Vegetable and Tea Science (NIVTS), Tsu, Mie, Japan, (2)The University of Tokyo, Tokyo, Japan P0848: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even Molecular Characterization of the Unintended and Unexpected Effects of Genetic Engineering on the Endogenous Solanum tuberosum Genome

Lerato Bame Tsalaemang Matsaunyane, Agricultural Research Council, Pretoria, South Africa P0849: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Odd Combined Fluorescent and Electron Microscopic Imaging Unveils the Specific Properties of Two Classes of Meiotic Crossovers - Tomato

Lorinda Anderson1, Leslie Lohmiller1, Xiaomin Tang1, Boyd Hammond1, Lauren Bombardier1, Lindsay Shearer1, Sayantani Basu-Roy2, Olivier C Martin2 and Matthieu Falque2, (1)Colorado State University, Fort Collins, CO, (2)INRA/CNRS/Univ Paris-Sud/AgroParisTech, Gif-sur-Yvette, France

273

P0850: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even National Bioresource Project-Tomato in Japan : Collection of Micro-Tom Mutants and Fruit Metabolic Profiles

Ken Hoshikawa1, Masahito Shikata1, Tohru Ariizumi1, Naoya Fukuda1, Yoshinori Kanayama2, Yasutaka Kubo3, Koh Aoki4 and Hiroshi Ezura1, (1)University of Tsukuba, Tsukuba, Japan, (2)Tohoku University, Sendai, Japan, (3)Okayama University, Okayama, Japan, (4)Osaka Prefecture University, Sakai, Japan P0851: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Odd Breeding for Nutritional Traits in Tomato Using Naturally Occurring Variation in the Fruit Specific Beta-Cyclase Promoter

Caleb Orchard1, Jessica Cooperstone2, Gabriel Abud1, Elisabet Gas-Pascual1, Steven Schwartz2, Marcela Carvalho Andrade1 and David M Francis1, (1)The Ohio State University, OARDC, Wooster, OH, (2)The Ohio State University, Food Science and Technology, Columbus, OH P0852: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even TOMATOMICS: An Integrated Database for Omics Information in Tomato

Soichi Ozaki1, Masaaki Kobayashi1, Maasa Kanno1, Kyoko Morimoto1, Mai Takazawa1, Koh Aoki2, Hajime Ohyanagi1 and Kentaro Yano1, (1)School of Agri, Meiji University, CREST, JST, Kawasaki, Japan, (2)Osaka Prefecture University, Sakai, Japan

P0853: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Odd Diversity Between Italian Landraces and Contemporary Tomato Varieties

Giandomenico Corrado, Daria Scarano, Martina Caramante and Rosa Rao, Università di Napoli Federico II, Portici (NA), Italy P0854: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even Tomato Domestication, From a Wild Ancestor to Crop Varieties : A Transcriptional Landscape Overview

Christopher Sauvage, INRA GAFL, Montfavet, France P0855: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Odd Combined Correlation-Based Network and mQTL Analyses Efficiently Identified Loci for Branched Chain Amino Acid, Serine to Threonine, and Proline Metabolism in Tomato Seeds

Albert Batushansky1, David Toubiana1, Oren Tzfadia2, Asif Khan1, Simon Barak1, Daniel Zamir3, Zoran Nikoloski4, Alisdair R Fernie4 and Aaron Fait5, (1)Ben-Gurion University, Midreshet Ben-Gurion, Israel, (2)Weizmann Institute of Science, Rehovot, Israel, (3)The Hebrew University of Jerusalem, Rehovot, Israel, (4)Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany, (5)Ben-Gurion University, Midreshet Ben Gurion, Israel

P0856: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even Fruit Weight Regulation in Tomato: Identification and Validation of Novel QTLs

Eudald Illa-Berenguer and Esther van der Knaap, The Ohio State University - OARDC, Wooster, OH P0857: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Odd The Genetic and Metabolic Changes Associated with the Tangerine Virescent Mutation in Tomato

Elisabet Gas-Pascual1, Jessica Cooperstone2, Susana De Jesus1, Ken M Riedl2, Steven Schwartz2 and David M Francis1, (1)The Ohio State University, OARDC, Wooster, OH, (2)The Ohio State University, Food Science and Technology, Columbus, OH P0858: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even Understanding the Molecular Basis of Phytonutrient Composition Differences in Organic Tomatoes Via Quantitative Transcriptome Analysis - Tomato (Solanum lycopersicum)

Richard Sharpe1, Seanna L Hewitt2, James L Crabb2, Benjamin Kilian2, Christopher Hendrickson2 and Amit Dhingra3, (1)Molecular Plant Sciences Graduate Program, Pullman, WA, (2)Washington State University, Pullman, WA, (3)Department of Horticulture, Washington State University, Pullman, WA

P0859: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Odd Genetic Regulation and Impacts of Acylsugar Chemotype in Tomato

Brian M Leckie, Darlene M De Jong, John R Smeda and Martha A Mutschler, Cornell University, Ithaca, NY P0860: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even Isolation and Genomic Characterization of Heat Tolerant Mutant Lines from Micro-Tom Mutant Collections

Shoma Fukumoto1, Sayaka Ooshima2, Mina Aiba2, Ken Hoshikawa3 and Hiroshi Ezura3, (1)Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan, (2)Central Japan Railway Company, Aichi, Japan, (3)Faculty of Life and Environmental Sciences, University of Tsukuba, Ibaraki, Japan P0861: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Odd Development of Functional Molecular Marker System to Differentiate Multiple Disease Resistances in Tomatoes

Hyun Jung Kim1, Jungsu Jung2, Je Min Lee3, Chang Sik Oh4 and Inhwa Yeam2, (1)Institute of Agricultural Science and Technology, Andong National University, Kyoungbukdo, South Korea, (2)Department of Horticulture and Breeding, Andong National University, Kyoungbukdo, South Korea, (3)Department of Horticultural Science, Kyungpook National University, Daegu, South Korea, (4)Department of Plant Science, Kyung Hee University, Gyeonggi-do, South Korea

274

P0862: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even Reassessment of QTLs for Late Blight Resistance in the Tomato Accession L3708 Using a Restriction Site Associated DNA (RAD) Linkage Map and Highly Aggressive Isolates of Phytophthora infestans

Ai-Lin Chen1, Chu-Yin Liu1, Chien-Hua Chen2, Jaw-Fen Wang2, Yu-Chen Liao3, Chia-Hui Chang3, Mong-Hsun Tsai1, Kae-Kang Hwu1 and Kaiyi Chen1, (1)National Taiwan University, Taipei, Taiwan, (2)AVRDC-The World Vegetable Center, Tainan, Taiwan, (3)Known-You Seed Co, LTD, Kaohsiung, Taiwan P0863: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Odd de novo Sequencing and Analysis of Multiple Pepper Genomes Provide Insight into the Evolution of Capsicum spp

Seungill Kim1, Yong-Min Kim2, Seon-In Yeom3, Myung-Shin Kim1 and Doil Choi1, (1)Department of Plant Science, Plant Genomics and Breeding Institute and Interdisciplinary Program in Agricultural Genomics, Seoul National University, Seoul, South Korea, (2)Korea Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, Daejon, South Korea, (3)Department of Horticulture, Institute of Agriculture & Life Science, Gyeongsang National University, Jinju, South Korea

P0864: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even Tomato Root Small-RNA Transcriptome Dynamics in Response to Potato Cyst Nematode Infection

Marek D Koter1, Magdalena Swiecicka1, Waldemar Skowron1, Joanna Weso&y2 and Marcin Filipecki1, (1)Warsaw University of Life Sciences - SGGW, Warszawa, Poland, (2)Institute of Molecular Biology and Biotechnology, Adam Mickiewicz University, Pozna), Poland P0865: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Odd A Map-Based Cloning Approach for the Identification of a Low Temperature Sensitive Gene Sy-2 in Chilli Pepper (Capsicum chinense)

LI LIU1, Jin-Ho Kang1, Yeong Deuk Jo1, Sota Koeda2, Munetaka Hosokawa2, Doil Choi3 and Byoung-Cheorl Kang1, (1)Department of Plant Science and Plant Genomics Breeding Institute, Seoul National University and Vegetable Breeding Research Center, Seoul, South Korea, (2)Kyoto University, Kyoto, Japan, (3)Department of plant science, PGBI of CALS, SNU, Seoul, South Korea P0866: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even TPGAS: The Transcriptome Platform for Gene Expression and Alternative Splicing Studies in Pepper (Capsicum annuum L)

Myung-Shin Kim, Seungill Kim and Doil Choi, Department of Plant Science, Plant Genomics and Breeding Institute and Interdisciplinary Program in Agricultural Genomics, Seoul National University, Seoul, South Korea

P0867: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Odd An Integrated Genomics Approach to Study Petunia Development Rate

Yufang Guo, Krystle Wiegert-Rininger, Veronica Vallejo, Cornelius S Barry and Ryan M Warner, Michigan State University, East Lansing, MI P0868: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even Assembly of a Multifunctional Speciation Island in Petunia

Michel Moser, Institute of Plant Sciences - University of Bern, Bern, Switzerland P0869: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Odd Characterization of the Rk1 Resistance to Nematode in Nicotiana tabacum By RNA-Seq Analysis

Emilie Julio, Julien Cotucheau, Christophe Decorps, Thibaut Laurent and François Dorlhac de Borne, Imperial Tobacco Group, Bergerac, France P0870: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even The Tobacco Genome Sequence

Nicolas Sierro, James Battey, Sonia Ouadi, Nicolas Bakaher, Lucien Bovet, Simon Goepfert, Manuel C Peitsch and Nikolai V Ivanov, Philip Morris International R&D, PMP SA, Neuchatel, Switzerland

P0871: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Odd Optical Mapping of the Solanum arcanum Genome

Sander A Peters1, Paola Gaiero2, Henri van de Geest1, Saulo Aflitos3, Gabino F Sanchez Perez3 and Hans de Jong4, (1)Plant Research International, Wageningen, Netherlands, (2)Department of Genetics - Wageningen University, Wageningen, Netherlands, (3)Plant Research International, Wageningen University, Wageningen, Netherlands, (4)Wageningen University, Wageningen, Netherlands P0872: Genome Mapping, Tagging & Characterization: Fruit Species - Even VitisCyc: A Metabolic Pathway Knowledgebase for Grape (Vitis vinifera)

Sushma Naithani1, Justin L Elser1, Eli Nathaniel Waddell2 and Pankaj Jaiswal1, (1)Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR, (2)Oregon State University, Corvallis, OR

275

P0873: Genome Mapping, Tagging & Characterization: Fruit Species - Odd VitisGen on the Road: Mapping the Way to the Next Generation of Grapes

Shanshan Yang1, Jonathan Fresnedo Ramirez2, Elizabeth M Takacs1, Paola Barba1, Katie Hyma2, Jacquelyn Lillis3, Charlotte Acharya2, Ann Fisher2, Linda Cote2, David Manns1, Imelda Ryona1, David Gadoury1, Bob Seem1, Gavin Sacks2, Anna Katherine Mansfield1, Craig A Ledbetter4, James J Luby5, Peter Hemstad5, Anne Fennell6, Chin-Feng Hwang7, Andrew Walker8, Summaira Riaz8, Peter Cousins3, Jason Londo3, Edward S Buckler9, Sharon E Mitchell2, Peter Schweitzer2, Qi Sun9, Lance Cadle-Davidson3 and Bruce Reisch1, (1)Cornell University, Geneva, NY, (2)Cornell University, Ithaca, NY, (3)USDA-ARS Grape Genetics Research Unit, Geneva, NY, (4)Crop Diseases, Pests and Genetics Research Unit, USDA-ARS, Parlier, CA, (5)University of Minnesota, St Paul, MN, (6)South Dakota State University, Brookings, SD, (7)Missouri State University, Mountain Grove, MO, (8)University of California Davis, Davis, CA, (9)Institute for Genomic Diversity, Cornell University, Ithaca, NY P0874: Genome Mapping, Tagging & Characterization: Fruit Species - Even High-Density SNP-Based Genetic Map for Identification of Fruit Quality-Related QTLs in Table Grape

Nilo Mejía, Nallatt Ocarez, Mauricio González, Bruno Defilippi and Eduardo Torres, Instituto de Investigaciones Agropecuarias, Centro Regional La Platina, Santiago, Chile

P0875: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Preliminary Identification of QTLs Controlling Water Use Efficiency in ‘Gala’ Apple (Malus x domestica)

Timothy Artlip1, John L Norelli2, Michael Wisniewski2, Gennaro Fazio3 and Mike Glenn2, (1)USDA-ARS-Appalachian Fruit Research Station, Kearneysville, WV, (2)USDA-ARS, Kearneysville, WV, (3)USDA-ARS, Geneva, NY P0876: Genome Mapping, Tagging & Characterization: Fruit Species - Even Application of Genotyping-By-Sequencing for Selection of Locus-Specific BAC Clones to Construct Physical Maps and Identify Candidate Genes in Vitis

Jacquelyn Ann Lillis1, Craig A Ledbetter2, Rajtilak Majumdar3 and Lance Cadle-Davidson3, (1)USDA-ARS, Geneva, NY, (2)Crop Diseases, Pests and Genetics Research Unit, USDA-ARS, Parlier, CA, (3)USDA-ARS Grape Genetics Research Unit, Geneva, NY P0877: Genome Mapping, Tagging & Characterization: Fruit Species - Odd We Prefer Them Old: Epigenetic Control of Wine Quality in Response to Grapevine Age

Carlos M Rodriguez Lopez, James M Breen, Roberta De Bei, Iain Searle and Cassandra Collins, University of Adelaide, Adelaide, Australia

P0878: Genome Mapping, Tagging & Characterization: Fruit Species - Even Exploring Quantitative Trait Loci for Anthocyanin Content in Interspecific Hybrid Grape (Vitis labruscana " Vitis vinifera)

Yusuke Ban1, Akifumi Azuma1, Nobuhito Mitani1, Takeshi Hayashi2, Akihiko Sato1, Atsushi Kono1 and Shozo Kobayashi1, (1)NARO Institute of Fruit Tree Science (NIFTS), Higashi-Hiroshima, Japan, (2)NARO Agricultural Research Center (NARC), Tsukuba, Japan P0879: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Plastid DNA Sequence Diversity in Wild Grapevine Samples (Vitis vinifera subsp sylvestris) from the Caucasus Region: Complete Plastid Genome Sequences of Georgian Samples

Ia Z Pipia, Agricultural University of Georgia, Tbilisi, Georgia P0880: Genome Mapping, Tagging & Characterization: Fruit Species - Even Genome-Wide Prediction Methods in Highly Diverse and Heterozygous Species: Proof-of-Concept through Simulation in Grapevine

Patrice This, INRA - UMR AGAP, Montpellier, France, Loïc Le Cunff, IFV, UMT Geno-Vigne®, Montpellier, France and Agota Fodor, INRA, UMR AGAP, Montpellier, France

P0881: Genome Mapping, Tagging & Characterization: Fruit Species - Odd The Advent of Precision Breeding: An Advanced Method of Plant Genetic Improvement and Its Utility for Vitis Spp

Deborah Dean1, Dennis Gray2, Zhijian T Li3, Trudi Nadia Lavinia Grant3, Sananand A Dhekney4 and Robert N Trigiano5, (1)Unifversity of Florida IFAS MREC, Apopka, FL, (2)University of Florida IFAS Mid-Florida Research and education Center, Apopka, FL, (3)University of Florida IFAS MREC, Apopka, FL, (4)University of Wyoming Sheridan Research and Education Center, Sheridan, WY, (5)University of Tennessee Dept of Entomology and Plant Pathology, Knoxville, TN P0882: Genome Mapping, Tagging & Characterization: Fruit Species - Even Fast and Robust Generation of High-Resolution Genetic Maps in Grapevine Interspecific Hybrid Half-Sib Families Using the HetMappS Pipeline and R/QTL

Paola Barba1, Katie Hyma2, Minghui Wang3, Jason Londo4, Charlotte Acharya3, Sharon E Mitchell3, Qi Sun5, Bruce Reisch6 and Lance Cadle-Davidson4, (1)Plant Breeding and Genetics Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, (2)Genomic Diversity Facility, Cornell University, Ithaca, NY, (3)Cornell University, Ithaca, NY, (4)USDA-ARS Grape Genetics Research Unit, Geneva, NY, (5)Institute for Genomic Diversity, Cornell University, Ithaca, NY, (6)Cornell University, Geneva, NY P0883: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Shotgun Proteome Analysis for Insight into Secondary Metabolite Production in Muscadine Grape

Mehboob B Sheikh and Devaiah M Kambiranda, Florida A&M University, Tallahassee, FL

276

P0884: Genome Mapping, Tagging & Characterization: Fruit Species - Even Comparative Mapping of the Muscadine Grape (Vitis rotundifolia) and the European Bunch Grape (V vinifera) Shows a High Level of Synteny Between the Two Species

Chris Owens, USDA-ARS, Geneva, NY P0885: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Gene Expression Analysis of Rugose Wood Affected Autografts of Grapevine Cultivar Refosk

Matja# Hladnik1, Jernej Jakse2 and Dunja Bandelj1, (1)University of Primorska, Koper, Slovenia, (2)University of Ljubljana, Biotechnical Faculty, Agronomy Department, Ljubljana, Slovenia P0886: Genome Mapping, Tagging & Characterization: Fruit Species - Even Analysis of Xylem Tissue and Xylem Sap Proteome Reveal Disease Tolerance Mechanisms Among Grape Species

Varshini Sridhar1, Ramesh Katam1, Devaiah M Kambiranda1, Joseph Bundy2, Sydney Lyda1, Kundai Chibanguza1 and Shelletta Tilghman1, (1)Florida A&M University, Tallahassee, FL, (2)Florida State University, Tallahassee, FL P0887: Genome Mapping, Tagging & Characterization: Fruit Species - Odd QTL Identification in an Interspecific Grapevine Cross Segregating for Resistance to Powdery Mildew, Downy Mildew, Black Rot, and Phylloxera

Soon Li Teh1, Matthew D Clark1, Peter Hemstad1, Jonathan Fresnedo Ramirez2, Qi Sun3, Lance Cadle-Davidson4, Adrian Hegeman1 and James J Luby1, (1)University of Minnesota, St Paul, MN, (2)Cornell University, Ithaca, NY, (3)Institute for Genomic Diversity, Cornell University, Ithaca, NY, (4)USDA-ARS Grape Genetics Research Unit, Geneva, NY

P0888: Genome Mapping, Tagging & Characterization: Fruit Species - Even How to Use GDR, the Genome Database for Rosaceae

Sook Jung1, Stephen P Ficklin1, Taein Lee1, Chun-Huai Cheng1, Anna Blenda2, Jing Yu1, Ping Zheng1, Sushan Ru1, Cameron Peace1, Katherine M Evans3, Nnadozie Oraguzie4, Lisa DeVetter1, Albert G Abbott5, Ksenija Gasic5, Mercy Olmstead6 and Dorrie Main1, (1)Washington State University, Pullman, WA, (2)Genetics and Biochemistry, Clemson University, Clemson, SC, (3)Washington State University, Wenatchee, WA, (4)Washington State University, Prosser, WA, (5)Clemson University, Clemson, SC, (6)University of Florida, Gainesville, FL P0889: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Silencing of Grapevine Pectate Lyase-like Genes VvPLL2 and VvPLL3 Confers Resistance Against Erysiphe necator and Differentially Modulates Gene Expression

Rajtilak Majumdar1, Siraprapa Brooks1, Jacquelyn Lillis1, Michael V Osier2, Bruce Reisch3 and Lance Cadle-Davidson1, (1)USDA-ARS Grape Genetics Research Unit, Geneva, NY, (2)Rochester Institute of Technology, Rochester, NY, (3)Cornell University, Geneva, NY P0890: Genome Mapping, Tagging & Characterization: Fruit Species - Even Developing a Genetic Map for Tetraploid Roses Using Genotyping-By-Sequencing

Travis Banks1, Michael Pautler1, Rumen Conev1 and Daryl J Somers2, (1)Vineland Research and Innovation Centre, Vineland Station, ON, Canada, (2)Vineland Research and Innovation Centre, Vineland, ON, Canada

P0891: Genome Mapping, Tagging & Characterization: Fruit Species - Odd RosaR80: A New Framework for the Comparative Analysis of Disease Resistance Genes in the Rosaceae - Apple, Peach, Strawberry

Leon Van Eck, University of Minnesota, Saint Paul, MN and James M Bradeen, University of Minnesota, St Paul, MN P0892: Genome Mapping, Tagging & Characterization: Fruit Species - Even Candidate Gene Expression Profiling Reveals a Time Specific Activation during Fruit Development and Ripening in Apple

Alice Tadiello1, Nicola Busatto2, Brian Farneti2, Riccardo Velasco1, Guglielmo Costa2 and Fabrizio Costa1, (1)Fondazione E Mach, San Michele all'Adige, Italy, (2)University of Bologna, Bologna, Italy P0893: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Genome Wide Transcriptome Investigation of Fruit Development and Ripening in Apple

Alice Tadiello1, Sara Longhi2, Nicola Busatto3, Brian Farneti3, Guglielmo Costa3, Massimo Delledonne4, Riccardo Velasco1 and Fabrizio Costa1, (1)Fondazione E Mach, San Michele all'Adige, Italy, (2)CIBIO-University of Trento, Mattarello (Trento), Italy, (3)University of Bologna, Bologna, Italy, (4)University of Verona, Verona, Italy

P0894: Genome Mapping, Tagging & Characterization: Fruit Species - Even Simulation of Genetic Gain from Marker-Assisted Seedling Selection for Quantitative Trait Improvement in Rosaceae Tree Fruit

Sushan Ru1, Craig Hardner2, Patrick A Carter1, Katherine M Evans3, Dorrie Main1 and Cameron Peace1, (1)Washington State University, Pullman, WA, (2)University of Queensland, Brisbane, Australia, (3)Washington State University, Wenatchee, WA P0895: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Uncovering a Major Ma1 Associated Co-Expression Gene Network Governing Apple Fruit Acidity

Yang Bai1, Laura Dougherty1, Lailiang Cheng2, Gan-Yuan Zhong3 and Kenong Xu1, (1)Horticulture Section, School of Integrative Plant Science, NYSAES,Cornell University, Geneva, NY, (2)Horticulture Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, (3)USDA-ARS GGRU, Geneva, NY P0896: Genome Mapping, Tagging & Characterization: Fruit Species - Even Saturated Linkage Map Construction in Hongro X Alps Otome Pseudo Test Cross Population Using Genomics

YoungKeun Jun, Seung Hyun Ban and Cheol Choi, Kyungpook National University, Daegu, South Korea

277

P0897: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Using Early Flowering Transgenic Apple to Accelerate the Breeding of Donor Parents with Multiple Loci for Disease Resistance (Malus x domestica)

John L Norelli1, Michael E Wisniewski1, Henryk Flachowsky2 and Viola M Hanke2, (1)USDA-ARS, Kearneysville, WV, (2)Julius Kühn-Institut, Institute for Breeding Research on Fruit Crops, Dresden, Germany P0898: Genome Mapping, Tagging & Characterization: Fruit Species - Even cis and trans eQTLs Reveal the Location of Major Gene Expression Switches in Apple Rootstocks

Gennaro Fazio, USDA, ARS/ Cornell University, Geneva, NY, Philip Jensen, Department of Plant Pathology, University Park, PA, Angela M Baldo, USDA ARS DBNRRC, Stuttgart, AR and Timothy McNellis, Department of Plant Pathology and Environmental Microbiology, University Park, PA P0899: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Characterization of Unique Plastid-Targeted Genes in Apple (Malus x domestica)

Ryan W Christian1, Scott Schaeffer2 and Amit Dhingra2, (1)Washington State University, Pullman, WA, (2)Department of Horticulture, Washington State University, Pullman, WA

P0900: Genome Mapping, Tagging & Characterization: Fruit Species - Even Fire Blight Resistant Pre-Breeding Apple Genotypes Developed Using the Early Flowering Approach

Melanie Jänsch1, Henryk Flachowsky2, Viola M Hanke2 and Andrea Patocchi1, (1)Agroscope, Wädenswil, Switzerland, (2)Julius Kühn-Institut, Institute for Breeding Research on Fruit Crops, Dresden, Germany P0901: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Genetic Characterization of Apple Accessions with Very Low Chilling Requirements in Israel

Taly Trainin, Matat Zohar, Danielle Mayer, Irit Bar-Yaakov, Kamel Khateeb, Doron Holland and Tal Isaacson, Agricultural Research Organization, Ramat Yishay, Israel P0902: Genome Mapping, Tagging & Characterization: Fruit Species - Even Genome-Wide Transcriptomic Analysis Correlated with Superficial Scald Development in Granny Smith Apples (Malus X Domestica Borkh)

Nicola Busatto1, Brian Farneti1, Alice Tadiello2, Massimo Delledonne3, Guglielmo Costa1, Riccardo Velasco2 and Fabrizio Costa2, (1)University of Bologna, Bologna, Italy, (2)Fondazione E Mach, San Michele all'Adige, Italy, (3)University of Verona, Verona, Italy

P0903: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Target Metabolite and Gene Transcription Profiling during the Development of Superficial Scald in Granny Smith Apple (Malus x domestica Borkh)

Nicola Busatto1, Brian Farneti1, Alice Tadiello2, Urska Vrhovsek2, Luca Cappellin2, Franco Biasioli2, Riccardo Velasco2, Guglielmo Costa1 and Fabrizio Costa2, (1)University of Bologna, Bologna, Italy, (2)Fondazione E Mach, San Michele all'Adige, Italy P0904: Genome Mapping, Tagging & Characterization: Fruit Species - Even Development of High-Throughput Indel Marker Based on Next Generation Sequencing in Korean Pears (Pyrus spp)

Jungyeon Won1, Youngjae Oh1, Seolah Kim1, Hyunsuk Shin1, Sewon Oh1, Yoon-Kyeong Kim2 and Daeil Kim1, (1)Chungbuk National University, Cheongju, South Korea, (2)National Institute of Horticultural & Herbal Science, Naju, South Korea P0905: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Modes of Gene Duplication and Gene Family Expansion and Evolution in Chinese White Pear

Xin Qiao, Lei-Ting Li, Shaoling Zhang, Jun Wu and Juyou Wu, Nanjing Agricultural University, Nanjing, China

P0906: Genome Mapping, Tagging & Characterization: Fruit Species - Even Classification of Korean Native Pear By Using a Standard Set of Simple Sequence Repeat Marker Alleles

Seolah Kim1, Youngjae Oh1, Hyunsuk Shin1, Jungyeon Won1, Sewon Oh1, Yoon-Kyeong Kim2, Nahla Bassil3 and Daeil Kim1, (1)Chungbuk National University, Cheongju, South Korea, (2)National Institute of Horticultural & Herbal Science, Naju, South Korea, (3)USDA/ARS, NCGR, Corvallis, OR P0907: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Utility of Standard Microsatellite Markers for Identification of Asian Pears (Pyrus spp)

Jungyeon Won1, Youngjae Oh1, Seolah Kim1, Hyunsuk Shin1, Sewon Oh1, Yoon-Kyeong Kim2, Nahla Bassil3 and Daeil Kim1, (1)Chungbuk National University, Cheongju, South Korea, (2)National Institute of Horticultural & Herbal Science, Naju, South Korea, (3)USDA/ARS, NCGR, Corvallis, OR P0908: Genome Mapping, Tagging & Characterization: Fruit Species - Even Genome-Wide Analysis of Monosaccharide Transporter (MST) Family Genes in Pear

Jiaming Li1, Shaoling Zhang2 and Jun Wu2, (1)Nanjing Agricultural Unviersity, Jiang su Provinceï*ŒNanjing city, China, (2)Nanjing Agricultural University, Nanjing, China

278

P0909: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Tanscriptome Analysis of Pear Fruit Development Revealing Different Gene Expression Pattern of Cultivated Species

Mingyue Zhang1, Cheng Xue2, Zhangjun Fei3, Shaoling Zhang2 and Jun Wu2, (1)Nanjing Agricultural University & Cornell University, Nanjing, China, (2)Nanjing Agricultural University, Nanjing, China, (3)Cornell University, Ithaca, NY P0910: Genome Mapping, Tagging & Characterization: Fruit Species - Even Genome-Wide Survey, Identification and Evolution Analysis of Aldo-Keto Reductase (AKR) Genes in Pear and Other Members in Rosaceae

Lei-Ting Li, Jun Wu, Xin Qiao and Shaoling Zhang, Nanjing Agricultural University, Nanjing, China P0911: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Genomic Characterization, Phylogenetic Comparison and Differential Expression of the Cyclic Nucleotide-Gated Channels Gene Family in Pear (Pyrus bretchneideri Rehd)

Jianqing Chen, Nanjing Agricultural University, Nanjing, TN, China

P0912: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Correlation Between Alkanes and Cracking in Different Sweet Cherries Varieties

Herman Silva1, Gisselle Poblete1, Francisco Robledo1, Jonathan Maldonado1, Juan Carlos Rios1, Lukas Schreiber2, Viktoria Zeisler2, Amit Dhingra3 and Basilio Carrasco4, (1)Lab Gen Func & Bioinfo - Fac Ciencias Agro - U de Chile, Santiago, Chile, (2)Institute of Cellular and Molecular Botany, Department of Ecophysiology, University of Bonn, Bonn, Germany, (3)Department of Horticulture, Washington State University, Pullman, WA, (4)Pontificia Universidad Católica de Chile, Santiago, Chile P0913: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Refining the Genomic Region Containing a Major Locus Controlling Fruit Maturity in Peach

Hanny Elsadr, University of Guelph, Guelph, ON, Canada, Travis Banks, Vineland Research and Innovation Centre, Vineland Station, ON, Canada, Daryl J Somers, Vineland Research and Innovation Centre, Vineland, ON, Canada and Jayasankar Subramanian, University of Guelph/Vineland Station, Vineland, ON, Canada P0914: Genome Mapping, Tagging & Characterization: Fruit Species - Even Association Mapping Analysis for Chemical and Physical Traits in Almond

Carolina Font i Forcada1, Rafael Socias i Company2 and Angel Fernandez i Marti1, (1)Genome Center, University of California, Davis, CA, (2)CITA Aragon, Zaragoza, Spain

P0915: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Marker Assisted Introgression: A Fast Approach to Assess the Value of Almond Genes and Integrate them in the Peach Genetic Background

Pere Arús1, Octavio Serra2, José M Donoso3, Iban Eduardo1, Werner Howad1 and Maria Jose Aranzana1, (1)IRTA, Bellaterra, Spain, (2)CRAG, Bellaterra, Spain, (3)INIA, Rengo, Chile P0916: Genome Mapping, Tagging & Characterization: Fruit Species - Even Genetic Dissection of Complex Fruit Quantitative Traits in Peach Progenies

Igor Pacheco Cruz1, Angelo Ciacciulli1, Cassia Da Silva-Linge1, Stefano Gattolin2, Cinzia Colombi2, Stefano Foschi3, Martina Lama4, Laura Rossini5 and Daniele Bassi6, (1)UNIMI, Dipartimento di Scienze Agrarie e Ambientali (DiSAA), Milan, Italy, (2)Parco Tecnologico Padano, Lodi, Italy, (3)CRPV soc coop, Cesena, Italy, (4)ASTRA Innovazione e Sviluppo SRL, Faenza, Italy, (5)Universty of Milan - DiSAA, Milano, Italy, (6)University of Milano, Milano, Italy P0917: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Methylation of the Sf Locus in Almond Is Associated with S-RNase Loss of Function

Angel Fernandez i Marti, Genome Center, University of California, Davis, CA, Thomas M Gradziel, University of California, Davis, CA and Rafael Socias i Company, CITA Aragon, Zaragoza, Spain

P0918: Genome Mapping, Tagging & Characterization: Fruit Species - Even Candidate Genes for Metabolite Profiling of Strawberry NIL Collection

Amparo Monfort, IRTA, Centre for Research in Agricultural Genomics CSIC-IRTA-UAB-UB, Bellaterra (Barcelona), Spain, Maria Urrutia, Center for Resarch in Agricultural Genomics CSIC-IRTA-UAB-UB, Bellaterra (Cerdanyola del Vallès), Spain, Wilfried Schwab, Technische Universität München, Freising, Germany and Thomas Hoffmann, Technische Universität München,, Freising, Germany P0919: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Development and Analysis of a Reference Transcriptome of Cultivated Strawberry

José F Sánchez-Sevilla1, José G Vallarino2, Iraida Amaya1, Sonia Osorio2, Miguel A Botella2 and Victoriano Valpuesta2, (1)IFAPA - Breeding and Biotechnology, Malaga, Spain, (2)IHSM-University of Málaga-CSIC, Málaga, Spain P0920: Genome Mapping, Tagging & Characterization: Fruit Species - Even Diversity Analysis and Genetic Mapping in Octoploid Strawberry (Strawberry " ananassa) Based on DArT Marker Platforms

José F Sánchez-Sevilla, IFAPA - Breeding and Biotechnology, Málaga, Spain, Aniko Horvath, INRA, Bordeaux, France, Andrzej Kilian, Diversity Arrays Technology Pty Ltd (DArT PL), Canberra, Australia, Béatrice Denoyes, INRA UMR 1332 - France, Villenave d'Ornon cedex, France and Iraida Amaya, IFAPA - Breeding and Biotechnology, Malaga, Spain

279

P0921: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Mutants of a Diploid Strawberry, Fragaria vesca, for Understanding Developmental Processes and Physiological Responses

Janet P Slovin, USDA/ARS Genetic Improvement of Fruit and Vegetables Lab, Beltsville, MD P0922: Genome Mapping, Tagging & Characterization: Fruit Species - Even Annotation of Tissue-Specific Transcriptome Data from Rabbiteye Blueberry (Vaccinium virgatum)

Timothy A Rinehart, USDA-ARS Southern Horticultural Laboratory, Poplarville, MS and Ann Loraine, University of North Carolina Charlotte, Charlotte, NC P0923: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Black Raspberry Genomic and Genetic Resource Development to Enable Cultivar Improvement

Jill M Bushakra1, Nahla Bassil1, Doug Bryant2, Todd C Mockler2, Michael Dossett3, Barbara Gilmore4, Mary Peterson5, Christine Bradish6, Gina Fernandez7, Jungmin Lee8 and Chad Finn5, (1)USDA/ARS, NCGR, Corvallis, OR, (2)Donald Danforth Plant Science Center, Saint Louis, MO, (3)Agriculture and Agri-Food Canada, Agassiz, BC, Canada, (4)USDA-ARS, Corvallis, OR, (5)USDA-Agricultural Research Service, Corvallis, OR, (6)North Carolina State University, Raleigh, NC, (7)NCSU, Raleigh, NC, (8)USDA-ARS, Parma, ID

P0924: Genome Mapping, Tagging & Characterization: Fruit Species - Even Meta-Analysis and Gene Co-Expression Network Analysis of Citrus-HLB Transcriptome Datasets Identify Candidate Citrus Genes for Engineering HLB Resistance

Nidhi Rawat1, Zhanao Deng1, Fred G Gmitter2 and Dongliang Du2, (1)University of Florida, Wimauma, FL, (2)University of Florida, IFAS-CREC, Lake Alfred, FL P0925: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Toward Genomic Selection in Blueberry

James Olmstead1, Catherine Cellon1, Rodrigo Amadeu1 and Patricio R Munoz2, (1)University of Florida, Gainesville, FL, (2)University of Florida - Agronomy Department, Gainesville, FL P0926: Genome Mapping, Tagging & Characterization: Fruit Species - Even Full-Length LTR Retrotransposons in the Genome of Citrus ! Clementina

Dongliang Du, Xiaoyun Du, Yanbo Wang and Fred G Gmitter, University of Florida, IFAS-CREC, Lake Alfred, FL P0927: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Genomic Structure and Evolution of the Citrus Tristeza Virus (CTV) Resistance Locus in Poncirus and Citrus

Nidhi Rawat1, Zhanao Deng1 and Fred G Gmitter2, (1)University of Florida, Wimauma, FL, (2)University of Florida, IFAS-CREC, Lake Alfred, FL

P0928: Genome Mapping, Tagging & Characterization: Fruit Species - Even Abiotic Stress and Hormonal Responses of a Promoter of Citrus Carotenoid Isomerase Gene in Transgenic Arabidopsis

In-Jung Kim1, Chang-Ho Eun2 and Seong-U Kim1, (1)Faculty of Biotechnology, Jeju National University, Jeju-si, Jeju Special Self-Governing Province, South Korea, (2)Subtropical Horticulture Research Institute, Jeju National University, Jeju-si, Jeju Special Self-Governing Province, South Korea P0929: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Exploiting the Citrus Genome Towards Understanding Genetic Traits Related to Fruit Quality and Disease Resistance

Marco A Takita1, Maiara Curtolo2, Mariangela Cristofani-Yaly1, Daniel Bedo Assumpção Castro3, Leonardo P Boava1, Evandro Henrique Schinor1, Marinês Bastianel1, Valdenice Moreira Novelli1 and Marcos Antonio Machado1, (1)Centro de Citricultura Sylvio Moreira, IAC, Cordeiropolis, SP, Brazil, (2)Centro de Energia Nuclear na Agricultura - USP, Piracicaba, SP, Brazil, (3)CBMEG, State University of Campinas, Campinas, Brazil P0930: Genome Mapping, Tagging & Characterization: Fruit Species - Even A Dexamethasone-Inducible Gene Expression System Is Active in Citrus Plant

Pascale Rossignol1, Vladimir Orbovic2, Tengbo Huang3, Christopher L Dupont4 and Vivian F Irish3, (1)Current Address J Craig Venter Institute, La Jolla, CA, (2)Citrus Research and Education Center, Lake Alfred, FL, (3)Yale University, New Haven, CT, (4)J Craig Venter Institute, La Jolla, CA

P0931: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Transcriptome Profile Analysis of Citrus Canker-Resistance Tangerine Ponkan (Citrus reticulata) Compared to Citrus Canker-Susceptible Sweet Orange Bahia (Citrus sinensis)

Gustavo de Carvalho Peron1, Mayara Mari Murata1, Teresa D C G Cofre1, Juliana da Silva Cavallini1, Roberto H Herai2, Adriano Ferrasa3, Renata Izabel Dozzi Tezza4, Maria Ines T Ferro5, José Belasque Jr6 and Jesus Aparecido Ferro5, (1)UNESP/FCAV - Depto deTecnologia, Jaboticabal, Brazil, (2)UCSD – Univ of California San Diego, San Diego, CA, (3)Universidade Estadual de Ponta Grossa - Depto de Informática, Ponta Grossa, Brazil, (4)FCAV/UNESP - CREBIO, Jaboticabal, Brazil, (5)UNESP/FCAV - Depto de Tecnologia, Jaboticabal, Brazil, (6)ESALQ/USP - Depto de Fitopatologia e Nematologia, Piracicaba, Brazil P0932: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Fine Mapping of Short Hypocotyl Locus in Semi-Wild Xishuangbanna Cucumber

Kailiang Bo, University of Wisconsin - Madison, Madison, WI P0933: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Identification of Genic SSR and SNP By Leaf Transcriptome Sequencing of Mango (Mangifera indica L) Varieties Neelam and Dushehari

Ajay Kumar Mahato1, Nimisha Sharma2, A K Singh2, Akshay Singh1, S K Singh2, Jai Prakash2, Manish Srivastava2, Kishore Gaikwad1, T R Sharma1 and N K Singh1, (1)National Research Centre on Plant Biotechnology, New Delhi, India, (2)Fruits and Horticultural Technology, New Delhi, India

280

P0934: Genome Mapping, Tagging & Characterization: Fruit Species - Even Identification of Homologous Chromosomes Revealed Evolution at Single-Copy Gene Loci in Cucumis "hytivus Chen and Kirkbride, a Nascent Allotetraploid Cucumis Species

Yunzhu Wang, Nanjing Agricultural University, Nanjing, China P0935: Genome Mapping, Tagging & Characterization: Fruit Species - Odd QTL Mapping of Parthenocarpy in Gynoecious Cucumber and Evaluation of a Marker Linked to a Major QTL

Zhe Wu and Ying Deng, Nanjing Agricultural University, Nanjing, China P0936: Genome Mapping, Tagging & Characterization: Fruit Species - Even Analysis of Differentially Expressed Genes in Cucumber Interspecific Introgression Line with Resistance to Downy Mildew

Chunyan Cheng1, Xin Pang1, Xuejiao Liu1, Ji Li1, Qunfeng Lou1 and Jinfeng Chen2, (1)Nanjing Agricultural University, Nanjing, China, (2)Nanjing Agricultural University, Nanjing, Jiangsu, China P0937: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Genetic and Transcriptomic Analysis of Age Related Resistance to Phytophthora capsici in Developing Cucumber Fruit

Rebecca Grumet, Ben Mansfeld and Marivi Colle, Michigan State University, East Lansing, MI

P0938: Genome Mapping, Tagging & Characterization: Fruit Species - Even Efficient Genetic Mapping and QTL Analysis in Watermelon

Sun-Ju Rhee1, Yun-Jung Jang1, Bal-Kum Han2, Yeon-Ju Koh1 and Gung-Pyo Lee2, (1)Chung-Ang University, Ansung, South Korea, (2)Dept of Integrative Plant Science, Chung-Ang University, Ansung, South Korea P0939: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Functional Analysis of Drought-Induced Transcriptional Regulatory Factor CLMYB1 in the Roots of Wild Watermelon

Atsushi Kato1, Masataka Kajikawa2, Yoshihiko Nanasato1, Hisashi Tsujimoto3, Akiho Yokota4 and Kinya Akashi5, (1)Tottori University, Tottori, Japan, (2)Kyoto University, Kyoto, Japan, (3)Arid Land Research Center, Tottori Univerisity, Tottori, Japan, (4)nara institute of science and technology, Ikoma, Japan, (5)Tottori University, tottori, Japan P0940: Genome Mapping, Tagging & Characterization: Fruit Species - Even High Quality Plant Genome Assembly Using PacBio Long Read Whole Genome Sequencing and Short Read Whole Genome Profiling (WGPTM) - Melon

Michiel de Both, Nathalie J van Orsouw, Jan van Oeveren, Jifeng Tang, Dennis Woltinge, Rui Peng Wang, Erwin Datema, Antoine Janssen, Edwin van der Vossen and Michiel van Eijk, KeyGene, Wageningen, Netherlands

P0941: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Identification of Candidate Resistance Genes against Squash leaf curl Philippine virus in Pumpkin (Cucurbita moschata) by Bulked Segregant Analysis and Massive Analysis of cDNA Ends

Roland Schafleitner1, Chung-cheng Lin2, Bjorn Rotter3, Jean-yu Lin1, Jin-teh Wang1, Shin-jiun Cherng1, Lawrence Kenyon1, Narinder Dhillon4 and Wen-shi Tsai5, (1)AVRDC - The World Vegetable Center, Tainan, Taiwan, (2)Kaiping Clover Seed Company Limited, Kaiping City, China, (3)GenXPro-GmbH, Frankfurt am Main, Germany, (4)AVRDC - Regional Office for East and Southeast Asia, Nakhon Pathom, Taiwan, (5)National Chiayi University, Chiayi City, Taiwan P0942: Genome Mapping, Tagging & Characterization: Fruit Species - Even Banana Genome Contributes to Understand Grass Chromosome Number Reduction and Genome Repatterning Mechanism

Xiyin Wang, Plant Genome Mapping Laboratory, University of Georgia, Athens, GA P0943: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Identification and Genetic Mapping of a Dominant Gene for Resistance to Powdery Mildew in Squash (Cucurbita pepo)

Guoyu Zhang, Haizhen Li, Fan Zhang, Ligang Jiang and Zhangcai Jia, Beijing Vegetable Research Center, Beijing Academy of Agricultural and Forestry Sciences, Beijing, China

P0944: Genome Mapping, Tagging & Characterization: Fruit Species - Even Managing Banana Genetic Resources and Genomic Information with the Triplet Drupal/Tripal/Chado

Valentin Guignon1, Max Ruas2, Gaëtan Droc3, Alexis Dereeper4, Julie Sardos5, Yann Hueber5, Jean-François Dufayard6, Nicolas Roux5 and Mathieu Rouard5, (1)Bioversity International, Commodity Systems & Genetic Resources, F-34397 Montpellier, France, (2)Bioversity International, Montferrier-sur-Lez, France, (3)CIRAD, UMR AGAP, Montpellier, France, (4)IRD, UMR RPB, F-34394 Montpellier, France, (5)Bioversity International, Montpellier, France, (6)CIRAD - UMR AGAP, Montpellier, France P0945: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Microsatellite Marker Development for Genes Related to Defense Responses in Musa acuminata

Robert N G Miller1, Flavia L Emediato1, Roberto C Togawa2 and Orzenil Bonfim Silva-Junior3, (1)Universidade de Brasília, Brasília, Brazil, (2)Embrapa Genetic Resources and Biotechnology, Brasília, Brazil, (3)EMBRAPA Gen Res Biotech & Catholic University Brasilia, Brasilia, Brazil P0946: Genome Mapping, Tagging & Characterization: Fruit Species - Even Identification of Genomic Region Associated with Female Date Palm through SCAR Markers

Madhia Habib1, Faisal Saeed Awan2, Bushra Sadia1, Muhammad Anjum Zia2, Jasia Anjum1 and Azeem Iqbal Khan2, (1)CABB, University of Agriculture Faisalabad, Faisalabad, Pakistan, (2)University of Agriculture Faisalabad, Faisalabad, Pakistan

281

P0947: Genome Mapping, Tagging & Characterization: Fruit Species - Odd National Date Palm Germplasm Repository (Phoenix dactylifra L)

Robert R Krueger, USDA-ARS National Clonal Germplasm Repository for Citrus & Dates, Riverside, CA P0948: Genome Mapping, Tagging & Characterization: Fruit Species - Even Impact of Transposable Elements on the Evolution of Coffea arabica (Rubiaceae)

Elaine S Dias1, Serge Hamon2, Perla Hamon2, Romain Guyot2, Alexandre de Kochko2 and Claudia Carareto1, (1)UNESP - Universidade Estatual Paulista, São José do Rio Preto, SP, Brazil, (2)IRD UMR DIADE, Montpellier cedex 5, France P0949: Genome Mapping, Tagging & Characterization: Sunflower/Oilseeds - Odd Deciphering the Genetic Basis of Solar Tracking By Genome-Wide Association Mapping in Sunflower

Srinidhi V Holalu, Austin G Garner, Lucas P Henry and Benjamin K Blackman, University of Virginia, Charlottesville, VA

P0950: Genome Mapping, Tagging & Characterization: Sunflower/Oilseeds - Even Reference Genome of Sunflower, Line HA412, Version 14: A Domesticated Compilospecies

Christopher J Grassa1, Gregory J Baute1, Brook Moyers1, Gregory L Owens2, Nolan Kane3, Nicolas Langlade4, Jérôme Gouzy4, Navdeep Gill1, S Evan Staton1, Thuy N Nguyen1, Sariel Hubner1, John E Bowers5, Nadia I Chaidir1, Hélène Bergès6, Matthew King7, Zhao Lai8, Eleni Bachlava9, Steve Knapp9, John M Burke5, Patrick Vincourt4 and Loren H Rieseberg1, (1)University of British Columbia, Vancouver, BC, Canada, (2)Botany - University of British Columbia, Vancouver, BC, Canada, (3)University of Colorado, Boulder, CO, (4)INRA LIPM, Castanet-Tolosan, France, (5)Department of Plant Biology, University of Georgia, Athens, GA, (6)INRA - CNRGV, Castanet Tolosan, France, (7)DuPont Pioneer, Johnston, IA, (8)Department of Biology, Indiana University, Bloomington, IN, (9)Monsanto Company, Woodland, CA P0951: Genome Mapping, Tagging & Characterization: Sunflower/Oilseeds - Odd Population Genomics of the Serpentine Sunflower, Helianthus bolanderi Using GBS

Gregory L Owens, Botany - University of British Columbia, Vancouver, BC, Canada and Loren H Rieseberg, University of British Columbia, Vancouver, BC, Canada P0952: Genome Mapping, Tagging & Characterization: Sunflower/Oilseeds - Even Using Genotyping-By-Sequencing to Identify Adaptive Genomic Regions in Wild Sunflower

Edward V McAssey and John M Burke, Department of Plant Biology, University of Georgia, Athens, GA

P0953: Genome Mapping, Tagging & Characterization: Cotton - Odd CottonGen: The Community Database for Cotton Genomics, Genetics and Breeding Research

Jing Yu1, Sook Jung1, Chun-Huai Cheng1, Stephen P Ficklin1, Taein Lee1, Ping Zheng1, Don C Jones2, Richard G Percy3 and Dorrie Main1, (1)Washington State University, Pullman, WA, (2)Cotton Incorporated, Cary, NC, (3)USDA-ARS, Southern Plains Agricultural Research Center, College Station, TX P0954: Genome Mapping, Tagging & Characterization: Cotton - Even Whole Genome Sequencing and Analysis of the 'A' Genome of Indian Diploid Cottons Gossypium arboreum and Gossypium herbaceum

Ishwarappa S Katageri1, V B Reddy Lachagari2, Malarvizhi A2, Milner Kumar M2, Ravi Gupta2, Sivarama Prasad Lekkala2, Boney Kuriakose2, Arjula R Reddy3, George Thomas4, Sam Santhosh2, Vamadevaiah HM1, Khadi BM1 and Biradar DP1, (1)University of Agricultural Sciences Dharwad, Dharwad, India, (2)SciGenom Labs Pvt Ltd, Kochi, India, (3)University of Hyderabad, Hyderabad, India, (4)SciGenom Research Foundation, Cheruthuruthy, India P0955: Genome Mapping, Tagging & Characterization: Cotton - Odd Detection of Large-Scale Single Nucleotide Polymorphisms (SNP) Using Genotyping-by-Sequencing in Upland Cotton (Gossypium hirsutum L)

Md Sariful Islam1, Gregory Thyssen2, Johnie N Jenkins3 and David D Fang2, (1)Cotton Fiber BioSciences Unit, USDA-ARS-SRRC, New Orleans, LA, (2)Cotton Fiber Biosciences Unit, USDA-ARS-SRRC, New Orleans, LA, (3)USDA-ARS, Mississippi State, MS

P0956: Genome Mapping, Tagging & Characterization: Cotton - Even Gene-Associated Interspecific SNPs for Cotton (Gossypium hirsutum L) Introgression, Genetic Dissection and Breeding

Amanda M Hulse-Kemp1, Hamid Ashrafi2, Xiuting Zheng1, Fei Wang1, Kevin A Hoegenauer1, Andrea BV Maeda1, Sam Yang3, Kevin Stoffel2, Marta Matvienko4, Kimberly Clemons5, Joshua A Udall5, Allen Van Deynze2, Don C Jones6 and David M Stelly1, (1)Texas A&M University, College Station, TX, (2)Seed Biotechnology Center, University of California, Davis, CA, (3)Monsanto Company, Chesterfield, MO, (4)CLC bio, Davis, CA, (5)Brigham Young University, Provo, UT, (6)Cotton Incorporated, Cary, NC P0957: Genome Mapping, Tagging & Characterization: Cotton - Odd QTLs for Fuzzless Trait in Cotton

Adem Bardak1, Yuksel Bolek1, Halil Tekerek2 and Hamdullah Korhan2, (1)Kahramanmaras Sutcu Imam University, Faculty of Agriculture, Department of Agricultural Biotechnology, Kahramanmaras, Turkey, (2)Kahramanmaras Sutcu Imam University, Graduate School of Natural and Applied Sciences, Kahramanmaras, Turkey P0958: Genome Mapping, Tagging & Characterization: Cotton - Even Towards Integrative Cyto-Genomics of the c12/c26 Homeologous Chromosome Pair of Cotton

Bo Liu, Amanda M Hulse-Kemp and David Stelly, Texas A&M University, College Station, TX P0959: Genome Mapping, Tagging & Characterization: Cotton - Odd DNA Methylation Dynamics during Fiber and Ovule Development

Qingxin Song, UT Austin, Austin, TX

282

P0960: Genome Mapping, Tagging & Characterization: Cotton - Even RNA-Seq Analysis of Short Fiber Mutants Ligon-Lintless-1 (Li1) and - 2 (Li2) Revealed Important Role of Aquaporins in Cotton (Gossypium hirsutum L) Fiber Elongation

Marina Naoumkina1, Gregory Thyssen1 and David D Fang2, (1)Cotton Fiber Biosciences Unit, USDA-ARS-SRRC, New Orleans, LA, (2)Crop Genetics Research Unit, USDA ARS, Stoneville, MS P0961: Genome Mapping, Tagging & Characterization: Cotton - Odd Distribution of Fiber Genes in Cultivated and Non-Cultivated Cotton Genomes

John Z Yu1, Zhanyou Xu2, Jing Yu3, Russell J Kohel1, Richard G Percy1, William D Beavis2 and Dorrie Main3, (1)USDA-ARS, Southern Plains Agricultural Research Center, College Station, TX, (2)Iowa State University, Ames, IA, (3)Washington State University, Pullman, WA P0962: Genome Mapping, Tagging & Characterization: Cotton - Even Next Generation Genetic Mapping of the Ligon-Lintless-2 (Li2) Locus in Upland Cotton

Gregory Thyssen1, David D Fang1, Rickie B Turley2 and Marina Naoumkina1, (1)Cotton Fiber Biosciences Unit, USDA-ARS-SRRC, New Orleans, LA, (2)USDA-ARS, Stoneville, MS P0963: Genome Mapping, Tagging & Characterization: Cotton - Odd The Effect of Promoter Region Indels on Expression Bias in Polyploid Cotton Species

Zach S Liechty, Brigham Young University, Provo, UT

P0964: Genome Mapping, Tagging & Characterization: Cotton - Even The Molecular Mechanisms of Plant Polyploidization Revealed By Systems Analysis of the Genomes and Transcriptomes of Wheat, Cotton and Related Species

Yang Zhang1, Yun-Hua Liu1, Meiping Zhang1, Qijun Zhang2, Steven S Xu3, Wayne Smith1, Steve Hague1, James Frelichowski4 and Hong-Bin Zhang1, (1)Texas A&M University, College Station, TX, (2)North Dakota State University, Fargo, ND, (3)USDA-ARS, Fargo, ND, (4)USDA-ARS, College Station, TX P0965: Genome Mapping, Tagging & Characterization: Cotton - Odd Towards Understanding the Genome of Diploid Cotton, Gossypium herbaceum Using Deep Sequencing

Venkateswara R Sripathi1, Seloame T Nyaku1, Fares Z Najar2, Bruce A Roe2, Ramesh Buyyarapu3, Jane Grimwood4, David M Stelly5, Lloyd T Walker1 and Govind C Sharma1, (1)Alabama A&M University, Normal, AL, (2)The University of Oklahoma, Norman, OK, (3)Dow AgroSciences, Indianapolis, IN, (4)HudsonAlpha Institute for Biotechnology, Huntsville, AL, (5)Texas A&M University, College Station, TX P0966: Genome Mapping, Tagging & Characterization: Cotton - Even Transcriptome Analysis of Gossypium hirsutum Flower Buds Infested by Cotton Boll Weevil (Anthonomus grandis) Larvae

Márcio Alves-Ferreira1, Sinara Artico1, Maria Fatima Grossi-de-Sa2, Osmundo Brilhante2, Leonardo Lima Pepino Macedo3, Marcelo Ribeiro-Alves4, Adriana Pinheiro Martinelli5 and Sylvia Silveira5, (1)Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil, (2)Embrapa Genetic Resources and Biotechnology, Brasilia, Brazil, (3)Universidade Católica, Brasilia, Brazil, (4)Oswaldo Cruz Foundation, Rio de Janeiro, Brazil, (5)Universidade de São Paulo, Piracicaba, Brazil

P0967: Genome Mapping, Tagging & Characterization: Forest Trees - Odd Pop's Pipes: Poplar Gene Expression Data Analysis Pipelines

Hairong Wei1, Chathura Gunasekara1, Xiang Li2 and Yufeng Guo1, (1)Michigan Technological University, Houghton, MI, (2)Michigan Technological Unviersity, Houghton, MI P0968: Genome Mapping, Tagging & Characterization: Forest Trees - Even The Oxford Nanopore Minion: A Tool for Combatting Illegal Logging of White Oaks?

Tara N Jennings1, Richard Cronn2, Brandon Burgess1, Sanjuro Jogdeo1, Aaron Liston1, Kevin Weitemier1 and Bradley Kinder3, (1)Oregon State University, Corvallis, OR, (2)USDA Forest Service Pacific Northwest Research Station, Corvallis, OR, (3)USDA Forest Service, Washington, DC P0969: Genome Mapping, Tagging & Characterization: Forest Trees - Odd Genomic Resources for North American Hardwoods

John E Carlson1, Margaret Staton2, Teodora Orendovici-Best1, Nicole Zembower1, Thomas Lane2, Jack Davitt2, Tatyana Zhebentyayeva3, Di Wu1, Daniela Moses4, Mark Coggeshall5, Oliver Gailing6, Sandra Owusu6, Sudhir Khodwekar6, Haiying Liang3, Jeanne Romero-Severson7, Christopher A Saski8, Scott Schlarbaum9, Ketia Shumaker10, Stephan Schuster4 and Nicholas Wheeler11, (1)Pennsylvania State University, University Park, PA, (2)University of Tennessee Institute of Agriculture, Knoxville, TN, (3)Clemson University, Clemson, SC, (4)Nanyang Technological University, Singapore, Singapore, (5)University of Missouri, Columbia, MO, (6)Michigan Technological University, Houghton, MI, (7)University of Notre Dame, Notre Dame, IN, (8)Clemson University Genomics Institute, Clemson, SC, (9)University of Tennessee, Knoxville, TN, (10)The University of West Alabama, Livingston, AL, (11)Pennsylvania State University, Centralia, WA

P0970: Genome Mapping, Tagging & Characterization: Forest Trees - Even Implementation of MAS in Canada's Forests: Institutional and Political Challenges

Véronique Maltais1, Nancy Gélinas1 and Chelsea Nilausen2, (1)Université Laval, Québec, QC, Canada, (2)University of British Columbia, Vancouver, BC, Canada P0971: Genome Mapping, Tagging & Characterization: Forest Trees - Odd Silver Birch - A Model for Tree Genetics?

Sitaram Rajaraman and Jarkko T Salojärvi, University of Helsinki, Helsinki, Finland P0972: Genome Mapping, Tagging & Characterization: Forest Trees - Even The Manuka Genome Project

Amali H Thrimawithana1, Ross N Crowhurst1, Elena Hilario1, Bruce Smallfield2, Cecilia H Deng1, David Chagne3, David Lewis4, Ed Morgan4, Hanh Ngo4, Helge Dzierzon4, John Van Klink5, Kevin Davies4, Murray Boase4, Nigel Perry5, Ross Bicknell2 and Kathy Schwinn4, (1)The New Zealand Institute for Plant & Food Research Limited, Auckland, New Zealand, (2)The New Zealand Institute for Plant & Food Research Limited, Lincoln, New Zealand, (3)Plant and Food Research, Palmerston North, New Zealand, (4)The New Zealand Institute for Plant & Food Research Limited, Palmerston North, New Zealand, (5)The New Zealand Institute for Plant & Food Research Limited, Dunedin, New Zealand

283

P0973: Genome Mapping, Tagging & Characterization: Forest Trees - Odd Functional Annotation of the Central Circadian Clock Components in Eucalyptus and Populus

Colan G Balkwill1, Eshchar Mizrachi2 and Zander Myburg1, (1)University of Pretoria, Pretoria, South Africa, (2)Department of Genetics, University of Pretoria, Pretoria, South Africa P0974: Genome Mapping, Tagging & Characterization: Forest Trees - Even Identification of Novel and Known miRNAs and Their Targets in Pinus spp and Eucalyptus globulus

Victor Carocha1, Ana Carvalho2, Clara S Graça3, Susana Pera4, Grégoire Le Provost5 and Jorge A P Paiva3, (1)ITQB-UNL, Oeiras - Port, Portugal, (2)Institute for Biotechnology and Bioengineering, Centre of Genomics and Biotechnology (IBB/CGB), Vila Real, Portugal, (3)Instituto de Biologia Experimental e Tecnologica, Oeiras, Portugal, (4)Instituto de Investigação Científica Tropical, Lisboa, Portugal, (5)UMR 1202 BIOGECO - INRA / Université Bordeaux 1, Site de Recherches Forêt Bois de Pierroton, Cestas, France P0975: Genome Mapping, Tagging & Characterization: Forest Trees - Odd Activation Tagging in Poplar for Gene Function Discovery

Gervais Pelletier, Natural Resources Canada / Canadian Forest Service, Quebec, QC, Canada

P0976: Genome Mapping, Tagging & Characterization: Forest Trees - Even Exploiting Genome Variation to Improve Next-Generation Sequencing Data Analysis and CRISPR gRNA Design in Populus tremula x alba 717-1B4

Liang-Jiao Xue, Mohammad Mohebbi, Patrick Breen, Xi Gu, Magdy S Alabady, Scott A Harding and Chung-Jui Tsai, University of Georgia, Athens, GA P0977: Genome Mapping, Tagging & Characterization: Forest Trees - Odd SNP Discovery of Nine Drought-Responsive Genes in Genus Populus and Development of SNP Genotyping Assays By TaqMan Probe-Based Real-Time PCR

Yong-Yul Kim1, Aru-Na Jo1, Ji-Min Park2 and Kyu-Suk Kang2, (1)Korea Forest Seed and Variety Center, Choongju, South Korea, (2)Seoul National University, Seoul, South Korea P0978: Genome Mapping, Tagging & Characterization: Forest Trees - Even Using Rnaseq to Identify Candidate Effectors in the Septoria Canker-Poplar Pathosystem

Kelsey L Dunnell, Jonathan Richards, Robert S Brueggeman and Jared M LeBoldus, Department of Plant Pathology, North Dakota State University, Fargo, ND

P0979: Genome Mapping, Tagging & Characterization: Forest Trees - Odd Population Structure Analysis in a Populus deltoides Association Population

Justyna A Resztak1, Annette M Fahrenkrog1, Juan J Acosta2, Leandro Gomide Neves1, Brad Barbazuk1 and Matias Kirst1, (1)University of Florida, Gainesville, FL, (2)University of Florida - SFRC, Gainesville, FL P0980: Genome Mapping, Tagging & Characterization: Forest Trees - Even Quantification of Nitrogen Fixation By Black Cottonwood's Endophytic Microbiome

Andrew Sher, University of California, San Diego, La Jolla, CA P0981: Genome Mapping, Tagging & Characterization: Forest Trees - Odd Increasing Biomass Production with Reduced Inputs in Non-Legume Crops Using N-Fixing Endophytes of Poplar

Sharon L Doty1, Zareen Khan1, Andrew W Sher2, Neil D Fleck1, Mahsa Khorasani1, Shyam Kandel1, Jenny L Knoth1, Amy S Baum1, Thomas H DeLuca1 and Soo-Hyung Kim1, (1)University of Washington, Seattle, WA, (2)University of California San Diego, San Diego, CA P0982: Genome Mapping, Tagging & Characterization: Forest Trees - Even Promoting Conifer Genomics (ProCoGen) - a EU-Funded Research Project on Conifer Genomics

Berthold Heinze, Austrian Federal Research Centre for Forests (BFW), Vienna, Austria, Maria Teresa Cervera, INIA-CIFRO, Madrid, Spain and Carmen Diaz-Sala, University of Alcala, Alcala de Henares - Madrid, Spain

P0983: Genome Mapping, Tagging & Characterization: Forest Trees - Odd Evolutionary History of Redwoods Revealed By Transcriptome and Targeted Sequence Capture

Alison Dawn Scott and David A Baum, University of Wisconsin, Madison, Madison, WI P0984: Genome Mapping, Tagging & Characterization: Forest Trees - Even Predictive Accuracy of Models Based on Multiple Genomic Attributes in Pinus taeda L

Ross Whetten, Department of Forestry & Environmental Resources, Raleigh, NC, Mengmeng Lu, Dept of Ecosystem Science and Management, Texas A&M University, College Station, TX, Konstantin V Krutovsky, Georg-August-University of Göttingen, Göttingen, Germany, Sreenath R Palle, Texas A&M University, College Station, TX, Candace Seeve, USDA-ARS, Columbia, MO and Carol Loopstra, Dept of Ecosystem Science and Management, Texas A&M University, College Station, TX P0985: Genome Mapping, Tagging & Characterization: Forest Trees - Odd Including Dominance Effects in Genomic Selection Regression Models with Different Priors - Pinus Taeda

Janeo Almeida Filho1, Joao F Rodrigues Guimaraes1, Marcio F Resende Jr1, Rodrigo Furtado dos Santos1, Patricio R Munoz2 and Matias Kirst1, (1)University of Florida, Gainesville, FL, (2)University of Florida, Agronomy Department, Gainesville, FL

284

P0986: Genome Mapping, Tagging & Characterization: Forest Trees - Even Marker-Assisted Selection for Disease Resistance in Loblolly Pine (Pinus taeda, L)

William Patrick Cumbie1, Dudley Huber2, Victor Steel1, Will Rottmann1, Les Pearson1 and Michael Cunningham3, (1)ArborGen Inc, Ridgeville, SC, (2)Quantitative Genetic Services LLC, Toccoa, GA, (3)ArborGen Inc, Tallahassee, FL P0987: Genome Mapping, Tagging & Characterization: Forest Trees - Odd Survey of the Sugar Pine (Pinus lambertiana) Transcriptome By Deep Sequencing

Daniel Gonzalez-Ibeas1, Pedro J Martinez-Garcia2, Randi Famula3, Carol Loopstra4, Jeffrey Puryear4, David Neale3 and Jill Wegrzyn5, (1)Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, (2)Department of Plant Sciences University of California, Davis, CA, (3)Dept Plant Sciences University of California, Davis, CA, (4)Dept of Ecosystem Science and Management, Texas A&M University, College Station, TX, (5)Department of Ecology and Evolutionary Biology - University of Connecticut, Storrs, CT

P0988: Genome Mapping, Tagging & Characterization: Forest Trees - Even Genome Annotation and Repeat Sequence Characterization in Sugar Pine (Pinus lambertiana)

Robin Paul1, Sowmya Kuruganti1, Kristian Stevens2, Daniel Gonzalez-Ibeas1, Pedro J Martinez-Garcia3, John Liechty3, Hans Vasquez-Gross3, Emily Grau3, Carol Loopstra4, Aleksey Zimin5, Ann Holtz-Morris6, Maxim Koriabine6, James A Yorke7, Marc Crepeau2, Daniela Puiu8, Steven L Salzberg8, Pieter J deJong6, Keithanne Mockaitis9, Dorrie Main10, Charles H Langley2, David Neale3 and Jill Wegrzyn1, (1)Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, (2)Department of Evolution and Ecology, University of California, Davis, Davis, CA, (3)Department of Plant Sciences, University of California, Davis, Davis, CA, (4)Dept of Ecosystem Science and Management, Texas A&M University, College Station, TX, (5)Institute for Physical Science and Technology, University of Maryland, College Park, MD, (6)Children's Hospital Oakland Research Institute, Oakland, CA, (7)Institute for Physical Science and Technology and Departments of Mathematics and Physics, University of Maryland, College Park, MD, (8)Johns Hopkins University, School of Medicine, Baltimore, MD, (9)Department of Biology, Indiana University, Bloomington, IN, (10)Washington State University, Pullman, WA P0989: Genome Mapping, Tagging & Characterization: Forest Trees - Odd A Field Experiment to Identify the Molecular Mechanisms Involved in Drought Stress Adaptation in Maritime Pine (Pinus pinaster Ait)

Gregoire Le Provost, INRA, BIOGECO, UMR 1202, CESTAS, France, Céline Lalanne, INRA, , BIOGECO, UMR 1202, Cestas, France, Erwan Guichoux, INRA, BIOGECO, UMR 1202, Cestas, France, Christophe Plomion, INRA,BIOGECO, UMR 1202, Bordeaux, France and Jean-Marc Gion, CIRAD, UMR AGAP, Montpellier, France

P0990: Genome Mapping, Tagging & Characterization: Forest Trees - Even Linkage Disequilibrium Analysis in a Two-Generation Pedigree of Maritime Pine

Fikret Isik1, Jérôme Bartholomé2, Annie Raffin3, Christophe Plomion4, Laurent Bouffier3 and Leopoldo Sanchez3, (1)North Carolina State University, Raleigh, NC, (2)INRA, Cestas, France, (3)INRA, Bordeaux, France, (4)INRA,BIOGECO, UMR 1202, Bordeaux, France P0991: Genome Mapping, Tagging & Characterization: Forest Trees - Odd Anthocyanin and Tannin Contents in High Elevation Conifers, Pinus cembra and Larix decidua

Daniela Jahn and Berthold Heinze, Austrian Federal Research Centre for Forests (BFW), Vienna, Austria P0992: Genome Mapping, Tagging & Characterization: Forest Trees - Even Genomic Selection in a Multi-Generation Breeding Population of Maritime Pine

Jérôme Bartholomé, INRA, Cestas, France, Marjorie Vidal, FCBA, Bordeaux, France, Joost van Heerwaarden, Wageningen University, Wageningen, Netherlands, Fikret Isik, North Carolina State University, Raleigh, NC, Christophe Plomion, INRA,BIOGECO, UMR 1202, Bordeaux, France and Laurent Bouffier, INRA, Bordeaux, France P0993: Genome Mapping, Tagging & Characterization: Forest Trees - Odd Flavonols Biosynthetic Genes are Activated during the Inclination Stress Response in Pine

Patricio Ramos, Joselin Guajardo, Maria A Moya-León and Raul Herrera, Institute of Biological Sciences - University of Talca, Talca, Chile

P0994: Genome Mapping, Tagging & Characterization: Forest Trees - Even Reticulate Evolution in Eucalypts: Evidence of Whole Chloroplast Capture Among Sections of Corymbia

Adam Healey, University of Queensland, St Lucia, Australia P0995: Genome Mapping, Tagging & Characterization: Forest Trees - Odd Cytological Analysis of Reciprocal Translocation Hypothesis in Chestnut Using BAC-FISH

Nurul Islam-Faridi1, MA Majid2, Tatyana Zhebentyayeva3, L Georgi4, Margaret Staton5, F Hebard4, P Sisco6 and C Dana Nelson7, (1)Southern Institute of Forest Genetics, US Forest Service, College Station, TX, (2)Dept of Ecosystem Science & Management, College Station, TX, (3)Clemson University, Clemson, SC, (4)The American Chestnut Foundation, Meadowview, VA, (5)University of Tennessee Institute of Agriculture, Knoxville, TN, (6)Carolinas Chapter of The American Chestnut Foundation, Asheville, NC, (7)Southern Institute of Forest Genetics, US Forest Service, Saucier, MS P0996: Genome Mapping, Tagging & Characterization: Forest Trees - Even Identification of the Tonoplast Intrinsic Aquaporin Genes in Eucalyptus grandis and Characterization of EgTIP2, an Osmotic Stress-Responsive Gene

Marcela Iara Rodrigues1, Juliana Pereira Bravo2 and Ivan G Maia1, (1)IB - UNESP - Department of Genetics, Botucatu, SP, Brazil, (2)IB - UNESP - Department of Genetics, Botucatu, Brazil

285

P0997: Genome Mapping, Tagging & Characterization: Forest Trees - Odd Classical and 'omics' Approaches to Control Witches' Broom (Moniliopthora perniciosa) Disease of Cacao

Karina Peres Gramacho1, Didier Clement2, Jose Luis Pires1, Uilson Vanderlei Lopes1 and Fabienne Micheli3, (1)Cacao Research Center (CEPEC/CEPLAC), Itabuna, Brazil, (2)CIRAD, UMR AGAP, Montpellier, France, (3)Universidade Estadual de Santa Cruz (UESC), Ilheus, Brazil P0998: Genome Mapping, Tagging & Characterization: Forest Trees - Even Molecular Characterization of Calotropis procera and the Calotropain Gene

Yves Sprycha1, D Angelo R Agossou Yao2, Stefan Porembski1 and Renate Horn1, (1)University of Rostock, Rostock, Germany, (2)Heinrich-Heine-Universität Düsseldorf, Düsseldorf, Germany P0999: Genome Mapping, Tagging & Characterization: General Comparative - Odd Genomic Strategies Reveal Biomarkers Underlying Insulin Sensitivity As a Link Between Obesity and Type 2 Diabetes

Amy Agbottah, Virginia State University, Henrico, VA and Glenn Harris, Virginia State University, Petersburg, VA

P1000: Genome Mapping, Tagging & Characterization: General Comparative - Even The 200 Mammals Project: Sequencing Genomes by a Novel Cost-Effective Method, Yielding a High-Resolution Annotation of the Human Genome

Jeremy Johnson1, Jessica Alfoldi1, Jason Turner-Maier1, Ross Swofford1, Eva Muren2, Oliver Ryder3, Iain MacCallum1, David B Jaffe1 and Kerstin Lindblad-Toh4, (1)Broad Institute, Cambridge, MA, (2)Uppsala University, Uppsala, Sweden, (3)San Diego Zoo Institute for Conservation Research, Escondido, CA, (4)Science for Life Laboratory, Uppsala University, Uppsala, Sweden P1001: Genome Mapping, Tagging & Characterization: General Comparative - Odd Banana Genome Contributes to Understand Grass Chromosome Number Reduction and Genome Repatterning Mechanism-Grasses and Banana

Xiyin Wang, Hebei United University, Tangshan, Hebei, China P1002: Genome Mapping, Tagging & Characterization: General Comparative - Even The Ensembl Farm: All You Need Is Livestock

Thibaut Hourlier, Fergal Martin, Rishi Nag, Daniel N Murphy, Carlos Garcia-Giron, Daniel Barrell, Konstantinos Billis, Bronwen Aken and Paul Flicek, European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, United Kingdom

P1003: Genome Mapping, Tagging & Characterization: General Comparative - Odd Genomic Strategies Reveal Biomarkers Underlying Racial/Ethnic Differences in Body Composition

Bre Minniefield and Glenn Harris, Virginia State University, Petersburg, VA P1004: Genome Mapping, Tagging & Characterization: General Comparative - Even The Role of Deleterious Substitutions in Crop Genomes

Thomas J Y Kono1, Fengli Fu1, Mohsen Mohammadi1, Robert M Stupar1, Gary J Muehlbauer2, Peter L Tiffin3, Kevin P Smith1, Justin Fay4 and Peter L Morrell5, (1)Department of Agronomy and Plant Genetics, University of Minnesota, St Paul, MN, (2)Department of Plant Biology, University of Minnesota, St Paul, MN, (3)Department of Plant Biology, University of Minnesota, Saint Paul, MN, (4)Washington University School of Medicine, St Louis, MO, (5)Department of Agronomy and Plant Genetics, University of Minnesota, Saint Paul, MN P1005: Genome Mapping, Tagging & Characterization: General Comparative - Odd Genome-Wide Analysis of Thionin Genes in Higher Plants

Kuaybe Yucebilgili Kurtoglu1, Ertugrul Filiz2, Ibrahim Ilker Ozyigit1 and Recep Vatansever1, (1)Marmara University, +stanbul, Turkey, (2)Duzce University, Duzce, Turkey

P1006: Genome Mapping, Tagging & Characterization: General Comparative - Even Genomicus: Fast and Intuitive Comparative Genomics in Plant and Animal Genome

Alexandra Louis1, Thi Thuy Nga Nguyen1, Matthieu Muffato2 and Hugues Roest Crollius3, (1)IBENS Paris, Paris, France, (2)EBI, Cambridge, United Kingdom, (3)Ecole Normale Supérieure, Institute of Biology (IBENS), Paris, France P1007: Genome Mapping, Tagging & Characterization: General Comparative - Odd Stable Chloroplast: Myth or Reality?

Shailesh Vinay Joshi and Dyfed Evans, South African Sugarcane Research Institute, Durban, South Africa P1008: Genome Mapping, Tagging & Characterization: General Comparative - Even Surprising Complexity of MADS-Box Genes in Ferns and Their Allies Revealed By the 1000 Plant Transcriptome Project

Lydia Gramzow and Günter Theißen, Friedrich Schiller University Jena, Jena, Germany

286

P1009: Genome Mapping, Tagging & Characterization: General Comparative - Odd Analysis of OneKP Transcriptomes Reveals Unequal Distribution of Terpene Synthase Genes Across Diverse Taxa in the Plant Kingdom

Qidong Jia, Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, TN, Xinlu Chen, Department of Plant Sciences, The University of Tennessee, Knoxville, TN, Guanglin Li, School of Life Sciences, Shaanxi Normal University, Xi'an, China, Gane Ka-Shu Wong, Department of Biological Sciences, University of Alberta, Edmonton, AB, AB, Canada and Feng Chen, Department of Plant Sciences, University of Tennessee, Knoxville, TN P1010: Genome Mapping, Tagging & Characterization: General Comparative - Even Non-Random Patterns of Genome-Wide Sequence Polymorphisms

Xianran Li1, Michael Scanlon2 and Jianming Yu1, (1)Iowa State University, Ames, IA, (2)Cornell University, Ithaca, NY P1011: Genome Mapping, Tagging & Characterization: General Comparative - Odd Expansion of Gene Families Encoding Disease Resistance Related Proteins in the Lactuca Clade within the Compositae

Sebastian Reyes Chin-Wo1, Marilena Christopoulou1, Leah McHale2, Alexander Kozik1 and Richard Michelmore1, (1)Genome Center, University of California, Davis, CA, (2)The Ohio State University, Columbus, OH

P1012: Genome Mapping, Tagging & Characterization: General Comparative - Even The Formation of DNA Transposon-Induced Tandem Direct Duplications and Their Occurrence Across 21 Plant Species

Tao Zuo, Iowa state University, Ames, IA P1013: Genome Mapping, Tagging & Characterization: General Comparative - Odd Comparative Genomics of Bremia lactucae

Rosa Juliana Gil1, Lida Derevnina2, Sebastian Reyes Chin-Wo1, Joan Wong3 and Richard Michelmore1, (1)Genome Center, University of California, Davis, CA, (2)UC Davis Genome Center, Davis, CA, (3)Bayer Crop Science, Gent, Belgium P1014: Genome Mapping, Tagging & Characterization: General Comparative - Even Plastid Evolution of the Heterotrophic Microalgae Prototheca

Aren M Ewing, Solazyme Inc, South San Francisco, CA

P1015: Genome Mapping, Tagging & Characterization: General Comparative - Odd de novo Construction of a "Gene Space" for a Diploid Plant Genome Rich in Repetitive Sequences

Christelle Aluome1, Grégoire Aubert2, Susete Alves Carvalho3, Elodie Marquand4, Marie-Christine Le Paslier5, Judith Burstin2 and Dominique Brunel6, (1)INRA_EPGV_US1279, Evry Cedex, France, (2)INRA UMR1347, Dijon Cedex, France, (3)IRISA, Rennes, France, (4)INRA_EPGV_US1279,CEA-IG/Centre National de Genotypage, Evry, France, (5)INRA, US1279 EPGV, CEA-IG/Centre National de Génotypage, EVRY, France, (6)INRA-EPGV, CP5721 Evry Cedex, France P1016: Genome Mapping, Tagging & Characterization: General Comparative - Even Crown Root Regulation in Response to Drought in Setaria and Brachypodium

Muh-ching Yee1, Jose Sebastian1, Rubén Rellán Álvarez1, Rita Nieu2, John Vogel3, Hui Jiang4, Thomas P Brutnell4 and Jose Dinneny1, (1)Carnegie Institution for Science, Stanford, CA, (2)USDA-ARS Western Regional Research Center, Albany, CA, (3)DOE Joint Genome Institute, Walnut Creek, CA, (4)Donald Danforth Plant Science Center, St Louis, MO P1017: Genome Mapping, Tagging & Characterization: General Comparative - Odd CAM Expression in the Homoploid Hybrid Yucca gloriosa

Karolina Heyduk and Jim Leebens-Mack, University of Georgia, Athens, GA

P1018: Genome Mapping, Tagging & Characterization: General Comparative - Even Using Physcomitrella patens to Reconstruct the Role of EVE1 in the Evolution of Land Plants

Johnathon Roger Blahut, University of Florida, Gainesville, FL P1019: Genome Mapping, Tagging & Characterization: General Comparative - Odd Formal Criteria for Gene Families and the Paucity of Large Families in Amborella Compared to All Other Angiosperms

David Sankoff1, Chunfang Zheng1, Poly Hannah da Silva2 and Simone Dantas2, (1)University of Ottawa, Ottawa, ON, Canada, (2)Universidade Federal Fluminense, Niterói, RJ, Brazil P1020: Genome Mapping, Tagging & Characterization: General Comparative - Even Comparative Genomics of Steinernema reveals Deeply Conserved Regulatory Networks in Nematodes Steinernema sp

Marissa Macchietto1, Adler Dillman2, Igor Antoshechkin3, Edwin E Lewis4, Heidi Goodrich-Blair5, Patricia Stock6, Byron Adams7, Paul W Sternberg3 and Ali Mortazavi1, (1)University of California, Irvine, Irvine, CA, (2)Stanford, Stanford, CA, (3)California Institute of Technology, Pasadena, CA, (4)University of California, Davis, Davis, CA, (5)University of Wisconsin, Madison, Madison, WI, (6)University of Arizona, Tucson, AZ, (7)Brigham Young University, Provo, UT

287

P1021: Genome Mapping, Tagging & Characterization: Natural Populations - Odd DNA Barcoding of Bats from Brazilian Midwest

Karina de Cassia Faria1, Tatiane Pires Sousa1, Joaquim Manoel da Silva1, Francisco P Lobo2 and Paulo César Venere3, (1)Universidade do Estado de Mato Grosso, Nova Xavantina, Brazil, (2)Embrapa Informática Agropecuária, Campinas, SP, Brazil, (3)Universidade Federal do Mato Grosso, Cuiabá, Brazil P1022: Genome Mapping, Tagging & Characterization: Natural Populations - Even Genetics and Genomics: Powerful Tools for Wildlife Conservation

Caitlin J Curry1, Paula A White2 and James N Derr1, (1)Texas A&M University, College Station, TX, (2)Zambia Lion Project, University of California, Los Angeles, Los Angeles, CA P1023: Genome Mapping, Tagging & Characterization: Natural Populations - Odd Genetic and Environmental Variation of Native and Non-Native Populations of a Compilo Species: The Brachypodium distachyon Species Complex

Jared C Streich1, Pip Wilson2, Kevin D Murray2, Norman Warthmann3, Shuangshuang Liu4, Pilar Catalan5, Luis Mur6, Riyan Chen2, Niccy Aitken2, Justin O Borevitz2 and Aaron Chuah2, (1)Australian National University, Canberra, NT, Australia, (2)Australian National University, Canberra, Australia, (3)The Australian National University, Canberra, ACT, Australia, (4)University of California, Davis, Davis, CA, (5)Department of Agriculture (Botany), High Polytechnic School of Huesca, University of Zaragoza, Huesca, Spain, (6)Aberystwyth University, Aberystwyth,, Wales

P1024: Genome Mapping, Tagging & Characterization: Natural Populations - Even Genetic Signatures of Climate Change: The Alpine Marmot Genome

Achchuthan Shanmugasundram, MRC National Institute for Medical Research, London, United Kingdom P1025: Genome Mapping, Tagging & Characterization: Natural Populations - Odd Fishing for Selection, but Only Catching Bias: Examining Library Effects in Double-Digest RAD Data in a Non-Model Marine Species

Jonathan B Puritz, Christopher M Hollenbeck and John R Gold, Marine Genomics Laboratory, Harte Research Institute, Department of Life Sciences, Texas A&M University - Corpus Christi, Corpus Christi, TX P1026: Genome Mapping, Tagging & Characterization: Natural Populations - Even Weak Population Genetic Differentiation of the Edible Dormouse (Glis glis) in the Stolowe Mountains in Poland

Magdalena Moska1, Heliodor Wierzbicki1, Magdalena Zato)-Dobrowolska1, Katarzyna Kozyra1, Jadwiga Jakubiec2 and Tomasz Strzala1, (1)Wroclaw University of Environmental and Life Sciences, Wroclaw, Poland, (2)The Stolowe Mountains National Park, Kudowa-Zdroj, Poland

P1027: Genome Mapping, Tagging & Characterization: Natural Populations - Odd The Distribution of Wks genes and Sequence Conservation of WKS1 in Wild Emmer Wheat Natural Populations

Lin Huang1, Hanan Sela2, Lihua Feng1, Qijiao Chen3, Tamar Krugman1, Jun Yan4, Jorge Dubcovsky5 and Tzion Fahima1, (1)University of Haifa, Haifa, Israel, (2)Tel-Aviv University, Tel Aviv, Israel, (3)Northwest A&F University, Yangling, China, (4)Chengdu University, Chengdu, China, (5)University of California Davis, Davis, CA P1028: Genome Mapping, Tagging & Characterization: Natural Populations - Even The Genetics of Divergence Between Upland and Lowland Ecotypes of Panicum virgatum

Elizabeth R Milano, University of Texas at Austin, Austin, TX, David Lowry, The Unviersity of Texas at Austin, Ausitn, TX and Tom Juenger, University of Texas-Austin, Austin, TX P1029: Genome Mapping, Tagging & Characterization: Natural Populations - Odd Exploring Genetic Diversity of the Atacama Desert Flora Using High-Throughput Transcriptome Sequencing

Henrietta Pál-Gábor, Carol Moraga, Tatiana Kraiser, Francisca P Díaz, Claudio Latorre and Rodrigo A Gutiérrez, Pontificia Universidad Católica de Chile, Santiago, Chile

P1030: Genome Mapping, Tagging & Characterization: Natural Populations - Even Adaptive Trait Variaiton and Genetic Divergence of a Widespread Native Grass Andropogon gerardii Across a Strong Climate Gradient in the US Great Plains

Matthew Galliart1, Brian Maricle2, Sara G Baer3, David Gibson4, L Wilson5, Loretta C Johnson6, Paul St Amand7, Jesse Poland1, Sofia Sabates8, Hannah Tetreault8, Johnny Bryant8, Theodore Morgan9, Mary Knapp10 and Nora Bello11, (1)Kansas State University, Manhattan, KS, (2)Biology Department,, Hays, KS, (3)Southern Illinois University, Carbondale, IL, (4)Divison of plant biology, Carbondale, IL, (5)Biology, Carbondale, IL, (6)Kansas state university, Manhattan, KS, (7)USDA-ARS-Small Grain Genotyping Lab, Manhattan, KS, (8)Division of Biology, Manhattan, KS, (9)Kansas State University, Department of Biology, Manhattan, KS, (10)Departement of Agronomy, Manhattan, KS, (11)Kansas State University, Department of Statistics, Manhattan, KS P1031: Genome Mapping, Tagging & Characterization: Natural Populations - Odd Analysis of Genetic Stability in Some Cyclamen Species Endemic to Turkey Following Cryopreservation By Vitrification

Tolga Izgu1, Basar Sevindik2, Ozhan Simsek3, Pembe Curuk4, Yildiz Kacar3 and Yesim Yalcin Mendi3, (1)Department of Plant Sciences, University of California, Davis, CA, (2)Department of Horticulture, Faculty of Agriculture, University of Cukurova Balcalı, Adana, Turkey, (3)Department of Horticulture, Faculty of Agriculture, University of Cukurova, ADANA, Turkey, (4)Department of Horticulture, Faculty of Agriculture, University of Cukurova, Adana, Turkey

288

P1032: Genome Mapping, Tagging & Characterization: Natural Populations - Even Heterogeneous Signals of Selection in Antirrhinum

Isabel María Liberal González, Real Jardín Botánico de Madrid (CSIC), Madrid, Spain and Jose Luis Blanco Pastor, Univetsity of Gothenburg, Göteborg, Sweden P1033: Genome Mapping, Tagging & Characterization: Natural Populations - Odd Genome-Wide Patterns of Linkage Disequilibrium in Red Drum (Sciaenops ocellatus)

Christopher M Hollenbeck, Jonathan B Puritz, David S Portnoy and John R Gold, Marine Genomics Laboratory, Harte Research Institute, Department of Life Sciences, Texas A&M University - Corpus Christi, Corpus Christi, TX P1034: Genome Mapping, Tagging & Characterization: Natural Populations - Even Inconsistent Clines and Shifting Thresholds: The Genetics of Seasonal Adaptation in Annual Mimulus guttatus

Benjamin K Blackman1, Nicholas J Kooyers1 and John H Willis2, (1)University of Virginia, Charlottesville, VA, (2)Duke University, Durham, NC P1035: Genome Mapping, Tagging & Characterization: Natural Populations - Odd A Single Locus Underlies Ecological Divergence and Reproductive Isolation in Yeast

Katie J Clowers, University of Wisconsin-Madison, Madison, WI

P1036: Genome Mapping, Tagging & Characterization: Natural Populations - Even Genome-Wide Association Mapping of Morphological Traits in Inter- and Intraspecies of Colchicum L

A Umut Tüyel1, Ezgi Cabuk Sahin2, Funda Senturk Akfirat3, Yildiz Aydin2, Muhammet Sakiroglu4, Erdal Kaya5 and Ahu Altinkut Uncuoglu1, (1)Faculty of Engineering - Department of Bioengineering - Marmara University, Istanbul, Turkey, (2)Faculty of Science and Arts - Department of Biology - Marmara University, Istanbul, Turkey, (3)Gebze Institute of Technology - Department of Biology and Genetics, Kocaeli, Turkey, (4)Department of Bioengineering - Faculty of Engineering and Architecture - Kafkas University, Kars, Turkey, (5)Ataturk Central Horticultural Research Institute, Yalova, Turkey P1037: Genome Mapping, Tagging & Characterization: Natural Populations - Odd Different Microbiomes Are Hosted in the Rhizosphere and Mycorrhizosphere of Tuber magnatum Truffle Seedlings

Gian Maria Niccolò Benucci1, Anna Sandionigi2, Massimo Labra2, Luisa Massaccesi1, Alberto Agnelli1, Domizia Donnini1 and Emidio Albertini1, (1)University of Perugia, Perugia, Italy, (2)ZooPlantLab, Dipartimento di Biotecnologie e Bioscienze, Milano, Italy P1038: Genome Mapping, Tagging & Characterization: Other Plant Species - Even The Flax (Linum usitassimum) Genome, A Revolution in Evolution

Christopher Cullis, Case Western Reserve University, Cleveland, OH

P1039: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd The Refined Flax Genome, Its Evolution and Applications

Frank M You1, Pingchuan Li1, Santosh Kumar2, Raja Ragupathy3, Mitali Banik1, Scott Duguid1, Helen Booker4, Michael Deyholos5, Yong-Bi Fu6, Andrew G Sharpe7 and Sylvie Cloutier8, (1)Agriculture and Agri-Food Canada, Morden, MB, Canada, (2)Agriculture and Agri-Food Canada, Brandon, MB, Canada, (3)Department of Plant Science, University of Manitoba, Winnipeg, MB, Canada, (4)University of Saskatchewan, Saskatoon, SK, Canada, (5)University of British Columbia, Kelowna, BC, Canada, (6)Agriculture and Agri-Food Canada, Saskatoon, SK, Canada, (7)National Research Council Canada, Saskatoon, SK, Canada, (8)Agriculture and Agri-Food Canada, Ottawa, ON, Canada P1040: Genome Mapping, Tagging & Characterization: Other Plant Species - Even GBS for Ipomoea trifida: A Next Generation Marker System for Sweetpotatoes

Awais Khan, David Maria, Reinhard Simon, Federico Diaz, Raul Eyzaguirre and Wolfgang Grüneberg, International Potato Center (CIP), Lima, Peru P1041: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd The Draft Genome of Hop (Humulus lupulus), an Essence for Brewing

Eiichiro Ono, Suntory Global Innovation Center Ltd, Osaka, Japan

P1042: Genome Mapping, Tagging & Characterization: Other Plant Species - Even EMS Mutants and Functional Genomics to Dissect Cell Wall Biology in Flax

Simon W Hawkins1, Maxime Chantreau1, Wout Boerjan2, Arata Yoshinaga3, François Mesnard4 and Brigitte Chabbert5, (1)University of Lille 1, Villeneuve d'Ascq, France, (2)Department of Plant Systems Biology, VIB, Gent, Belgium, (3)Kyoto University, Kyoto, Japan, (4)Université de Picardie Jules Verne, Amiens, France, (5)INRA URCA UMR614 FARE, Reims, France P1043: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd FlaxDB: A Comprehensive and Integrated Genome and Breeding Database for Flax Improvement

Yunfeng Shan1, Pingchuan Li2, Scott Duguid2, Sylvie Cloutier3, Michael Deyholos4, Yi Wang5, Yong Q Gu5, Helen Booker6 and Frank M You2, (1)Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada, (2)Agriculture and Agri-Food Canada, Morden, MB, Canada, (3)Agriculture and Agri-Food Canada, Ottawa, ON, Canada, (4)University of British Columbia, Kelowna, BC, Canada, (5)USDA ARS, Western Regional Research Center, Albany, CA, (6)University of Saskatchewan, Saskatoon, SK, Canada P1044: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Genome Assembly of Amaranthus Hypochondriacus: An Emerging C4 Pseudo-Cereal Grain Crop

Jared Clouse1, Justin T Page1, Thiruvarangan Ramaraj2, Josh Udall1, Eric N Jellen1 and Jeff Maughan1, (1)Brigham Young University, Provo, UT, (2)National Center for Genome Resources, Santa Fe, NM

289

P1045: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Next Generation Sequencing, Assembly and Annotation of Chloroplasts for Phylogenetic Analysis of Amaranths

Erika Viljoen, Agricultural Research Council, Pretoria, South Africa, Dave K Berger, University of Pretoria, Dept Plant Sciences, Pretoria, South Africa and Jasper Rees, Agricultural Research Council, Gauteng, South Africa P1046: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Comparative Study of Lysine Biosynthesis in Edible Grains of Caryophyllales

Meeta Sunil, Nivedita Hariharan, Arjun Sreedhar, Thejas Makam Shivakumar Gupta, Keerthivasan Chandradoss Raanin, Savita Karthikeyan, Subhashini Srinivasan and Bibha Choudhary, Institute of Bioinformatics and Applied Biotechnology, Bangalore, Karnataka, India P1047: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Towards Understanding the Evolution of Repeat Elements in Caryophyllales

Suran R Nambisan, Keerthivasan Chandradoss Raanin, Meeta Sunil, Arjun Sreedhar, Thejas Makam Shivakumar Gupta, Bibha Choudhary and Subhashini Srinivasan, Institute of Bioinformatics and Applied Biotechnology, Bangalore, Karnataka, India

P1048: Genome Mapping, Tagging & Characterization: Other Plant Species - Even de novo Assembly and Molecular Marker Development in Tall Fescue Using RNA Seq Data

Shyamal K Talukder1, Perumal Azhaguvel2, Konstantin Chekhovskiy1, Shreyartha Mukherjee1 and Malay C Saha1, (1)The Samuel Roberts Noble Foundation, Ardmore, OK, (2)Syngenta, Slater, IA P1049: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Genes and QTLs Controlling Heavy Metal Uptake in Perennial Grasses Grown on Phytotoxic Soil

Lan Yun, Inner Mongolia Agricultural University, Hohhot, China, Steve Larson, USDA-ARS, Forage & Range Research Lab, Logan, UT, Kevin Jensen, USDA-ARS, Forage & Range Lab, Logan, UT, Jack E Staub, USDA-ARS Forage & Range Research lab, Logan, UT and Paul Grossl, Utah State University, Logan, UT P1050: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Genomic Selection Using Genotyping-By-Sequencing Data with Different Coverage Depth in Perennial Ryegrass

Fabio Cericola1, Luc L Janss1, Stephen Byrne2, Dario Fè3, Adrian Czaban2, Torben Asp2, Morten Greve-Pedersen4, Niels Roulund5, Christian Sig Jensen6, Ingo Lenk7 and Just Jensen3, (1)Aarhus University, Tjele, Denmark, (2)Aarhus University, Slagelse, Denmark, (3)Molecular Biology and Genetics, Aarhus University, Tjele, Denmark, (4)DLF-Trifolium, St Heddinge, Roskilde, Denmark, (5)DLF-Trifolium, St Heddinge, Denmark, Roskilde, Denmark, (6)DLF Trifolium, Store Heddinge, Denmark, (7)DLF-Trifolium, St Heddinge, Denmark, Store Heddinge, Denmark

P1051: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Sequencing Based Identification of Resistance Genes in Lolium multiflorum

Verena Knorst1, Franco Widmer1, Bruno Studer2, Stephen Byrne3, Torben Asp3 and Roland Kölliker1, (1)Agroscope Institute for Sustainability Sciences, Zurich, Switzerland, (2)Swiss Federal Institute of Technology, Zuerich, Switzerland, (3)Aarhus University, Slagelse, Denmark P1052: Genome Mapping, Tagging & Characterization: Other Plant Species - Even The Massive Mitochondrial Genome of the Angiosperm Silene noctiflora Is Evolving By Gain or Loss of Entire Chromosomes

Zhiqiang Wu and Daniel Sloan, Colorado State University, Fort Collins, CO P1053: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Transcriptome Sequencing for Dissecting Growth Mechanism of a Commercially Important Sub-Tropical Bamboo - Dendrocalamus hamiltonii

Abhishek Bhandawat, Gagandeep Singh, Aparna S Raina and Ram K Sharma*, * Author for correspondence, mrk_sharma@yahoocom ; Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, India

P1054: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Partitioning SNPs Identified By GBS into Genome Annotation Classes and Calculating SNP-Explained Variances for Heading Date and Disease Resistance from the Resulting Genomic Relationship Matrices - Lolium perenne

Stephen Byrne1, Fabio Cericola2, Luc L Janss3, Just Jensen4, Dario Fè4, Bilal H Ashraf4, Adrian Czaban1, Morten Greve-Pedersen5, Ingo Lenk6, Christian Sig Jensen7 and Torben Asp8, (1)Aarhus University, Slagelse, Denmark, (2)Aarhus University, Tjele, Denmark, (3)Aarhus University, Aarhus, Denmark, (4)Molecular Biology and Genetics, Aarhus University, Tjele, Denmark, (5)DLF-Trifolium, St Heddinge, Roskilde, Denmark, (6)DLF-TRIFOLIUM A/S, Store Heddinge, Denmark, (7)DLF Trifolium, Store Heddinge, Denmark, (8)Molecular Biology and Genetics, Aarhus University, Slagelse, Denmark P1055: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Using Massive Multivariate NIRS Data in Ryegrass

Vahid Edriss, Aarhus University, Tjele, Denmark, Morten Greve-Pedersen, DLF-Trifolium, St Heddinge, Roskilde, Denmark, Christian Sig Jensen, DLF Trifolium, Store Heddinge, Denmark and Just Jensen, Molecular Biology and Genetics, Aarhus University, Tjele, Denmark P1056: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Transcriptome Assemblies in Polyploid Spartina (Poaceae, Chloridoideae), Duplicate Gene Detection and Molecular Divergence Using Next-Generation Sequencing

Julien Boutte, Malika Lily Ainouche and Armel Salmon, University of Rennes 1 - UMR CNRS 6553, Rennes, France

290

P1057: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Whole Genome Sequencing of Eragrostis tef

Gina Cannarozzi, Institute of Plant Sciences, University of Bern, Bern, Switzerland and Zerihun Tadele, University of Bern, Bern, Switzerland P1058: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Genome Size and Chromosome Number Variation Among Caladium Species and Somaclonal Variants

Zhe Cao1, Shunzhao Sui2 and Zhanao Deng1, (1)University of Florida, Wimauma, FL, (2)Southwest University, Chongqing, China P1059: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Highly Reduced Plastid Genomes of Non-Photosynthetic Orchids Epipogium aphyllum and Epipogium roseum

Mikhail I Schelkunov1, Viktoriya Ju Shtratnikova1, Maxim S Nuraliev1, Marc-André Selosse2, Aleksey A Penin1 and Maria D Logacheva1, (1)Lomonosov Moscow State University, Moscow, Russia, (2)Muséum National d'Histoire Naturelle, Département Systématique et Evolution, Paris, France P1060: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Breeding Lettuce to Maximize Nutrional Content Across Diverse Environments

David W Still, Youngsook You and Danielle Ellis, Cal Poly Pomona, Pomona, CA

P1061: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd SEQUON - Sequencing the Onion Genome

Richard Finkers1, Wilbert van Workum2, Martijn van Kaauwen1, Henk Huits3, Annemieke Jungerius4, Ben Vosman1 and Olga E Scholten1, (1)Wageningen UR Plant Breeding, Wageningen, Netherlands, (2)ServiceXS, Leiden, Netherlands, (3)Bejo Zaden BV, Warmenhuizen, Netherlands, (4)Genetwister Technologies BV, Wageningen, Netherlands P1062: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Detection and Characterization of Recombination Events at Sequence Level in Recombinant Inbred Lines from an Inter-Specific Cross of Lactuca sativa x L serriola

Alexander Kozik, Lutz Froenicke, Dean Lavelle, Maria Jose Truco, Sebastian Reyes Chin-Wo and Richard Michelmore, Genome Center, University of California, Davis, CA P1063: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Localization of a Novel Gene for Resistance to Fusarium Root Rot Race 2 in Lettuce, Lactuca sativa L

Takato Koba1, Yukari Shimizu1, Akane Taguchi1, Fumika Chino1, Hiroaki Serizawa2, Kousuke Seki2, Hidenori Sassa1 and Shinji Kikuchi1, (1)Chiba University, Matsudo City, Japan, (2)Nagano Vegetable and Ornamental Crop Experimental Station, Shiojiri, Japan

P1064: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Construction of a Linkage Map with AFLPs to Identify Genes for Bacterial Leaf Spot Resistance in Lettuce (Lactuca sativa L)

Huangjun Lu, Everglades Research & Education Center, University of Florida, Belle Glade, FL P1065: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Molecular Mapping of the Banded Cucumber Beetle Resistance in Romaine Lettuce Valmaine

Huangjun Lu1, Ramkrishna Kandel2, Gregg Nuessly2, Heather McAuslane3 and Jinguo Hu4, (1)Everglades Research & Education Center, University of Florida, Belle Glade, FL, (2)Everglades Research and Education Center, University of Florida, Belle Glade, FL, (3)Entomology and Nematology Department, University of Florida, Gainesville, FL, (4)USDA ARS, Pullman, WA P1066: Genome Mapping, Tagging & Characterization: Other Plant Species - Even High Quality de novo Assembly of the Common Ice Plant (Mesembryanthemum crystallinum L) Transcriptome - A Functional Genomics Resource for Crassulacean Acid Metabolism (CAM) and Halophytism

Won Cheol Yim1, Richard L Tillett2, Bahay G Bilgi1, Rebecca L Albion1, Karen A Schlauch2, Samuel M D Seaver3 and John C Cushman1, (1)Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Reno, NV, (2)Nevada Center for Bioinformatics, University of Nevada, Reno, Reno, NV, (3)Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL

P1067: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Viroid Derived Small RNAs Can Cause Change of Expression in Selected Genes of Hops

Tine Pokorn1, Natasa Stajner1, Sebastjan Radisek2, Branka Javornik1 and Jernej Jakse1, (1)University of Ljubljana, Biotechnical Faculty, Agronomy Department, Ljubljana, Slovenia, (2)Slovenian Institute for Hop Research and Brewing, Plant Protection Department, %alec, Slovenia P1068: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Evaluation of Flooding Tolerance in Echinochloa Species

Ji-Hoon Im, Gyoungju Nah and Do-Soon Kim, Seoul National University, Seoul, South Korea P1069: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd The Draft Genome of Kalanchoë fedtschenkoi: A Model Plant Species for the Study of Crassulacean Acid Metabolism (CAM)

Rachel Brenchley, Suzanna Boxall, Louise Dever, Richard Gregory, Yongxiang Fang, Alistair C Darby, Neil Hall and James Hartwell, University of Liverpool, Liverpool, United Kingdom

291

P1070: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Mapping of QTL Associated with Resistance to Cassava Brown Streak and Mosaic Diseases in Outcrossing Cassava Cultivars Locally Cultivated in Tanzania

Esther A Masumba, International Institute for Tropical Agriculture (IITA), Dar es salaam, Tanzania P1071: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Two Cassava Novel Cap-Binding Proteins Interact with VPgs of Cassava Brown Streak Virus and Ugandan Cassava Brown Streak Virus

Zhongguo Xiong1, Shanshan Shi1, M Alejandra Mandel1, Morag Ferguson2, Teddy Amuge2, Peng Zhang3, Zhixin Liu4 and Steve Rounsley5, (1)University of Arizona, Tucson, AZ, (2)International Institute of Tropical Agriculture (IITA), Nairobi, Kenya, (3)Institute of Plant Physiology & Ecology, Shanghai, China, (4)Chinese Academy of Tropical Agricultural Sciences, Haikou, China, (5)Dow Agrosciences, Indianapolis, IN P1072: Genome Mapping, Tagging & Characterization: Other Plant Species - Even A Comparative Genomic Study of the C3 Sugar Beet and the C4 Edible Grain Amaranth

Meeta Sunil, Nivedita Hariharan, Thejas Makam Shivakumar Gupta, Arjun Sreedhar, Keerthivasan Chandradoss Raanin, Savita Karthikeyan, Bibha Choudhary and Subhashini Srinivasan, Institute of Bioinformatics and Applied Biotechnology, Bangalore, Karnataka, India

P1073: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Comparative Transcriptome Analysis of Cultivated Sweet Potato (Ipomea batatas) and Wild Ancestor (I trifida)

Sathish Kumar Ponniah, University of Arkansas at Pine Bluff, Pine Bluff, AR, Jyothi Thimmapuram, Purdue University, West Lafayette, IL, Ketaki Bhide, Purdue University, West Lafayette, IN, Venu (Kal) Kalavacharla, Delaware State University, Dover, DE and Muthusamy Manoharan, University of Arkansan-PIne Bluff, Pine Bluff, AR P1074: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Integrated Molecular and Morphological Studies of Daucus

Carlos Arbizu, Dept Horticulture, University of Wisconsin-Madison, Madison, WI, Holly Ruess, USDA Agricultural Research Service, Madison, WI, Douglas Senalik, USDA-ARS, Madison, WI, Phil Simon, USDA ARS and University of Wisconsin - Madison, Madison, WI, Kathleen Reitsma, Iowa State University, North Central Regional Plant Introduction Station, Ames, IA and David Spooner, USDA - ARS, Madison, WI P1075: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Resilience Traits in Underutilised Crops: Drought Tolerance in Bambara Groundnut

Wai Kuan Ho, Crops For the Future, Semenyih, Malaysia

P1076: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Heritability and Genetic Basis of Top Size in Carrots (Daucus carota, L)

Sarah D Turner, University of Wisconsin-Madison, Madison, WI and Philipp W Simon, USDA-ARS and University of Wisconsin-Madison, Madison, WI P1077: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd High-Resolution Mapping of Root and Leaf Anthocyanin Pigmentation QTL in Carrot

Philipp W Simon, USDA-ARS and University of Wisconsin-Madison, Madison, WI, Pablo Cavagnaro, CONICET, and INTA EEA La Consulta, Mendoza, Argentina, Massimo Iorizzo, University of Wisconsin-Madison, Madison, WI, Mehtap Yildiz, Yuzuncu Yil University, Van, Turkey, Douglas Senalik, USDA-ARS, Madison, WI, Joshua Parsons, University of Wisconsin, Madison, WI and Shelby Ellison, Department of Horticulture, University of Wisconsin, Madison, WI P1078: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Detecting and Characterizing the Highly Divergent Plastid Genome of the Nonphotosynthetic Hydnora visseri (Hydnoraceae)

Julia Naumann1, Joshua P Der2, Loren Honaas3, Eric Kenneth Wafula3, Sarah T Wagner1, Samuel S Jones3, Paula Ralph3, Jay F Bolin4, Erika Maass5, Christoph Neinhuis1, Stefan Wanke1 and Claude dePamphilis3, (1)TU Dresden, Chair for Botany, Dresden, Germany, (2)California State University Fullerton, University Park, PA, (3)Penn State University, University Park, PA, (4)Catawba College, Salisbury, NC, (5)University of Namibia, Windhoek, Namibia

P1079: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd RNA Sequencing$Mediated Transcriptome Analysis of a Naturally Occurring Uranium$Tolerant Species Prosopis juliflora

Chandra Obul Reddy Puli1, Sravani Kunduru1, B Jayanna Naik1, Pandit Varakumar1, Krishna Kumar Guduru1, Suresh Raju Kandula1, Akila Chandra Sekhar1, Vijay Bhaskar Reddy Lachagari2 and Arjula R Reddy3, (1)Yogi Vemana University, Kadapa, India, (2)SciGenome Labs Pvt Ltd, Kochi, India, (3)University of Hyderabad, Hyderabad, India P1080: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Development of an EMS-Induced Sesame Mutant Population for Target Induced Local Lesions in Genomes (TILLING)

Ming Li Wang, Brandon Tonnis, David Pinnow, J Bradly Morris and Gary A Pederson, USDA-ARS, PGRCU, Griffin, GA P1081: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Evolution of Panax ginseng Revealed by Genome Sequencing and Chloroplast Genome Diversity

Tae-Jin Yang1, Nam-Hoon Kim1, Woojong Jang1, Junki Lee1, Beom-Soon Choi2, Kyunghee Kim1, Nomar Espinosa Waminal1, Hong-Il Choi3, Hyun-Seung Park1, Jonghoon Lee1, Hyun Oh Lee1, HyunJoo Lee1, Ho Jun Joh1, Jee Young Park1, Sampath Perumal1, Murukarthick Jayakodi1, Yun Sun Lee1, Yeisoo Yu4 and Hyun Hee Kim5, (1)Seoul National University, Seoul, South Korea, (2)PHYZEN Genomics Institute, Seoul, South Korea, (3)Korea Atomic Energy Reserach Institute, Jeongeup-si, South Korea, (4)Arizona Genomics Institute, University of Arizona, Tucson, AZ, (5)Plant Biotechnology Institute, Sahmyook University, Seoul, South Korea

292

P1082: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Comparative Exploration of Fern Genome Space

Joshua P Der1, Emily Sessa2, Blaine Marchant3, Fay-Wei Li4, Carl J Rothfels5, Erin M Sigel6, Jo Ann Banks7, Matthew A Gitzendanner2, Clayton J Visger3, Douglas E Soltis2, Pamela S Soltis2, Kathleen M Pryer6 and Paul G Wolf8, (1)California State University Fullerton, Fullerton, CA, (2)University of Florida, Gainesville, FL, (3)University of Florida, Gainsville, FL, (4)Duke University, Durham, NC 27708, NC, (5)University of British Columbia, Vancouver, BC, Canada, (6)Duke University, Durham, NC, (7)Purdue University, West Lafayette, IN, (8)Utah State University, Logan, UT P1083: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Sequencing the Genome of Sinningia speciosa (Lodd) Hiern, a Reference for the Neotropical Gesneriaceae

Aureliano Bombarely, Virginia Polytechnic Institute and State University, Department of Horticulture, Blacksburg, VA and David Zaitlin, KTRDC - University of Kentucky, Lexington, KY

P1084: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Domestication of the Nitrogen Fixing Fern-Cyanobacteria Symbiosis Azolla for the Circular Economy

Paul Brouwer1, Adrie van der Werf2, Laura Dijkhuizen1, Klaas GJ Nierop1, Gert-Jan Reichert1, Bruno Huettel3, Canan Külahoglu4, Samantha Kurz4, Andreas PM Weber4, Sjef Smeekens1, Andrea Bräutigam4 and Henriette Schluepmann1, (1)Utrecht University, Utrecht, Netherlands, (2)Plant Research International, Wageningen-UR, Wageningen, Netherlands, (3)Max Planck-Genome-centre Cologne, Köln, Germany, (4)Heinrich Heine Universität Düsseldorf, Düsseldorf, Germany P1085: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd The Azolla Genome and the Metagenomes of Its Obligate Endosymbionts: Unlocking the Massive Green Potential of a Little Fern

Fay-Wei Li1, Shifeng Cheng2, Josh Der3, Bo Song2, Xun Xu2, Xin Liu2, Andrea Bräutigam4, Carl J Rothfels5, Erin M Sigel6, Paul G Wolf7, Yoichiro Kato8, Henriette Schluepmann9, Gane Ka-Shu Wong10 and Kathleen M Pryer1, (1)Duke University, Durham, NC, (2)BGI-Shenzhen, Shenzhen, China, (3)California State University, Fullerton, CA, (4)Heinrich Heine Universität Düsseldorf, Düsseldorf, Germany, (5)University of British Columbia, Vancouver, BC, Canada, (6)National Museum of Natural History, Smithsonian Institution, Washington, DC, (7)Utah State University, Logan, UT, (8)Crop and Environmental Sciences Division, International Rice Research Institute, Manila, Philippines, (9)Utrecht University, Utrecht, Netherlands, (10)Department of Biological Sciences, University of Alberta, Edmonton, AB, AB, Canada

P1086: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Phylotranscriptomics of Ferns and Lycophytes, Two Key Lineages in Land-Plant Evolution

Shing H Zhan1, Carl J Rothfels1, Zhenxiang Xi2, Fay-Wei Li3, Emily Sessa4, Michael S Barker5, Joshua P Der6, Markus Ruhsam7, Anders Larsson8, Dylan Burge9, Lisa DeGironimo10, Shona Ellis1, Charles C Davis2, Paul G Wolf11, Jim Leebens-Mack12, Michael Deyholos13, Gane Ka-Shu Wong14, Dennis Wm Stevenson15 and Sean W Graham1, (1)University of British Columbia, Vancouver, BC, Canada, (2)Harvard University, Cambridge, MA, (3)Duke University, Durham, NC 27708, NC, (4)University of Florida, Gainesville, FL, (5)University of Arizona, Tucson, AZ, (6)California State University Fullerton, Fullerton, CA, (7)Royal Botanic Garden Edinburgh, Edinburgh, United Kingdom, (8)Uppsala University, Uppsala, Sweden, (9)California Academy of Sciences, San Francisco, CA, (10)New York Botanic Garden, Bronx, NY, (11)Utah State University, Logan, UT, (12)University of Georgia, Athens, GA, (13)University of British Columbia, Kelowna, BC, Canada, (14)Department of Biological Sciences, University of Alberta, Edmonton, AB, AB, Canada, (15)New York Botanical Garden, Bronx, NY P1087: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Transcriptome of the Gametophyte Thalli of Red Marine Algae, Pyropia tenera, Under Drought Stress Condition

Sung Oh Im1, Sunhee Kim1, Hyun Shin Jung1, Mi Sook Hwang2, Eun-Jeong Park3, Won-Joong Jeong4 and Dong-Woog Choi1, (1)Chonnam National University, Gwangju, South Korea, (2)Aquatic Plant Variety Center, NFRDI, Mokpo, South Korea, (3)Seaweed Research Center, NFRDI, Mokpo, South Korea, (4)KRIBB, Daejeon, South Korea

P1088: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Genome-Wide Identification of Novel Genes Involved with Photosynthesis and the Carbon Concentrating Mechanism of the Green Alga Chlamydomonas reinhardtii

Gregory P Reeves, University of Cambridge, Cambridge, United Kingdom P1089: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd The Chara braunii Genome Sheds Light on the Origin of Land Plants

Hidetoshi Sakayama, Kobe University, Kobe, Japan, Atsushi Toyoda, Comparative Genomics laboratory, NIG, ROIS, Shizuoka, Japan, Yutaka Suzuki, University of Tokyo, Kashiwa, Japan, Asao Fujiyama, Comparative Genomics Laboratory, National Institute of Genetics, Mishiyama, Japan, Stefan A Rensing, Faculty of Biology, University of Marburg, Marburg, Germany and Tomoaki Nishiyama, Kanazawa University, Kanazawa, Japan P1090: Transformation - Even Ensifer-Mediated Transformation (EMT): A Novel Technology Platform for Engineering Plant Genomes

Manuel A Lopez Vernaza1, Dheeraj Rathore1, Toni Wendt2, Fiona Doohan3 and Ewen Mullins1, (1)Teagasc, Carlow, Ireland, (2)Carlsberg Research Centre, Copenhagen, Denmark, (3)University College Dublin, Dublin, Ireland

293

P1091: Transformation - Odd Development of a Robotic Platform for Automated Screening and Transformation of Switchgrass Suspension Cultures

Elizabeth M Dlugosz1, Scott C Lenaghan2 and C Neal Stewart Jr1, (1)Department of Plant Sciences, University of Tennessee, Knoxville, TN, (2)Center for Renewable Carbon, University of Tennessee, Knoxville, TN P1092: Transformation - Even TALEN-Mediated Editing of the Caffeic Acid 3-O-Methyltransferase for Genetic Improvement of the Biofuel Feedstock Sugarcane

Je Hyeong Jung and Fredy Altpeter, University of Florida - IFAS, Gainesville, FL P1093: Transformation - Odd Transformation Efficiency, Transgene Integration Complexity and Expression Stability Following Biolistic or Agrobacterium-mediated Transformation of Sugarcane

Hao Wu1, Aloisio Vilarinho1, Faisal Saeed Awan1, Qianchun Zeng1, Baskaran Kannan1, Tenisha Phipps1, Jamie McCuiston2, Wenling Wang2, Kerry Caffall2 and Fredy Altpeter1, (1)University of Florida - IFAS, Gainesville, FL, (2)Syngenta Biotechnology Inc, Durham, NC P1094: Transformation - Even Comprehensive Suite of Vectors Suitable for Wheat Transformation

Alison K Huttly, Rothamsted Research, Harpenden, United Kingdom

P1095: Transformation - Odd Improving Wheat Yield Under Heat Stress By Expressing Putative Thermostable Starch Synthase Genes

Bin Tian1, Shyamal K Talukder2, Hyeonjun Lee1, Allan K Fritz1 and Harold N Trick1, (1)Kansas State University, Manhattan, KS, (2)The Samuel Roberts Noble Foundation, Ardmore, OK P1096: Transformation - Even A Brassica napus Bi-Directional Promoter Exhibits Differential Leaf-Expression Patterns in Soybean Transgenic Lines Generated Using Agrobacterium-Mediated Transformation

Toby Cicak, Dow AgroSciences, West Lafayette, IN P1097: Transformation - Odd High-Throughput Transformation for Switchgrass Cell Cultures

Kellie P Burris, University of Tennessee, Knoxville, TN, Scott C Lenaghan, Center for Renewable Carbon, University of Tennessee, Knoxville, TN and C Neal Stewart Jr, Department of Plant Sciences, University of Tennessee, Knoxville, TN P1098: Transformation - Even Antibiotic Resistant Gene Deletion in Transgenic Tobacco

Alexia Dickey and Kevin Wang, Northeastern State University, Broken Arrow, OK

P1099: Transformation - Odd Non-Homologous End-Joining Proteins Limit T-DNA Integration into the Plant Genome and Facilitate Transgene Expression

So-Yon Park1, Zarir Vaghchhipawala2, Balaji Vasudevan2, Lan-Ying Lee3, Zhanyuan Zhang4, Stan Gelvin5 and Kirankumar S Mysore2, (1)Virginia Tech, Blacksburg, VA, (2)The Samuel Roberts Noble Foundation, Ardmore, OK, (3)Purdue University, West Lafayette, IN, (4)University of Missouri, Columbia, MO, (5)Department of Biological Sciences, Purdue University, West Lafayette, IN P1100: Transformation - Even Development of Site-Specific Recombinase Technology for Targeted Integration with Marker Removal from the Plant Genome

James Thomson, USDA-WRRC, Albany, CA P1101: Transformation - Odd Effects of Different Acetosyringone Concentrations on Transformation of RolABCD Genes in Some Citrus Rootstock Through Agrobacterium rhizogenes

Dicle Donmez1, Ozhan Simsek2, Tolga Izgu1, Yesim Yalcin Mendi2, Turgut Yesiloglu1 and Yildiz Kacar2, (1)Cukurova University, ADANA, Turkey, (2)Department of Horticulture, Faculty of Agriculture, University of Cukurova, ADANA, Turkey

P1102: Transformation - Even Field Trial of Xanthomonas Wilt Disease-Resistant GM Bananas in East Africa

Leena Tripahti1, Jaindra Tripathi1, Andrew Kiggundu2, Sam Korie3, Frank Shotkoski4 and Wilberforce Tushemereirwe5, (1)International Institute of Tropical Agriculture, Kampala, Uganda, (2)National Agricultural Research Laboratories (NARL), Kampala, Uganda, (3)International Institute of Tropical Agriculture, Ibadan, Nigeria, (4)Cornell University, Ithaca, NY, (5)National Agriculture Research Laboratories, Kampala, Uganda P1103: Transformation - Odd Overexpression of rpfF from Xylella fastidiosa Induces Less Bacterial Movement and Reduction of Citrus Variegated Chlorosis Symptoms

Raquel Caserta1, Reinaldo Rodrigues de Souza-Neto2, Willian Eduardo Lino Pereira3, Marco A Takita4, Marcos Antonio Machado4, Steven E Lindow5 and Alessandra Alves de Souza4, (1)Centro Apta Citros Sylvio Moreira/IAC, Cordeirópolis, Brazil, (2)Universidade Estadual de Campinas/ Centro de Citricultura Sylvio Moreira, Cordeirópolis, Brazil, (3)Centro Apta Citros Sylvio Moreira, Cordeirópolis, Brazil, (4)Centro de Citricultura Sylvio Moreira, IAC, Cordeiropolis, SP, Brazil, (5)University of California Berkeley, Berkeley, CA P1104: Transformation - Even Generation of the First Cisgenic Fire Blight Resistant Apple Line of the Cultivar 'Gala'

Thomas D Kost1, Melanie Jänsch2, Cesare Gessler1, Henryk Flachowsky3, Andrea Patocchi2 and Giovanni AL Broggini1, (1)ETH Zurich, Zurich, Switzerland, (2)Agroscope, Wädenswil, Switzerland, (3)Julius Kühn-Institut, Institute for Breeding Research on Fruit Crops, Dresden, Germany

294

P1105: Bioinformatics: Databases - Odd From Genes to Genomes – New Features and Data Access

Kim D Pruitt1, Terence D Murphy1 and Paul Kitts2, (1)National Center for Biotechnology Information (NCBI/NLM/NIH), Bethesda, MD, (2)NIH/NLM/NCBI, Bethesda, MD P1106: Bioinformatics: Databases - Even The European Variation Archive at EMBL-EBI

Gary Saunders, European Bioinformatics Institute (EMBL-EBI), Hinxton, United Kingdom P1107: Bioinformatics: Databases - Odd NetAffxTM Expression Array Comparison Tool: Instantaneous Search of an Expansive Cross-Species Catalog

Stan Trask, Affymetrix, Santa Clara, CA P1108: Bioinformatics: Databases - Even Manual and Automatic Annotation of Plants and Animals in the UniProt Knowledgebase and the Gene Ontology

Claire O'Donovan, European Bioinformatics Institute (EMBL-EBI), Hinxton, United Kingdom

P1109: Bioinformatics: Databases - Odd dbSNP and dbVar: NCBI Databases of Simple and Structural Variations

Lon Phan, Hua Zhang, Mike Kholodov, David Shao, Rama Maiti, Eugene Shekhtman, Juliana Sampson, Qiang Wang, John Lopez, Tim Hefferon, John Garner and Ming Ward, NIH/NLM/NCBI, Bethesda, MD P1110: Bioinformatics: Databases - Even Prometheus: Omics Portal for Comparative Genomics

Yong-Min Kim, Korea Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, Daejon, South Korea, Seongjin Park, Korea Research Institute Bioscience and Biotechnology(KRIBB), Daejeon, South Korea, Insu Jang, Korea Research Institute of Bioscience and Biotechnology, Daejeon, South Korea and Jin Ok Yang, KRIBB, Daejeon, South Korea P1111: Bioinformatics: Databases - Odd Genotype Investigator for Genome Wide Analysis (GIGwA)

Pierre Larmande, IRD, UMR DIADE, Institut de Biologie Computationnelle, Montpellier, France, Guilhem Sempéré, CIRAD, UMR Intertryp, Montpellier, France, Florian Philippe, IRD - UMR DIADE, Montpellier cedex 5, France, Alexis Dereeper, IRD, UMR RPB, F-34394 Montpellier, France, Manuel Ruiz, CIRAD, UMR AGAP, Institut de Biologie Computationnelle, Montpellier Cedex 5, France and Gautier Sarah, INRA - UMR AGAP, Montpellier, France P1112: Bioinformatics: Databases - Even Improving the Flow of Data to NCBI Sequence Repositories, SRA and GenBank

Ilene Mizrachi, National Center for Biotechnology Information (NCBI/NLM/NIH), Bethesda, MD

P1113: Bioinformatics: Databases - Odd Leveraging iPlant Cyberinfrastructure for a New Data-Driven Research Community

James Carson1, Eric Dawson1, James E Koltes2, Eric Fritz-Waters2, James M Reecy2 and Matt Vaughn3, (1)Texas Advances Computing Center, University of Texas, Austin, TX, (2)Department of Animal Science, Iowa State University, Ames, IA, (3)Texas Advanced Computing Center, Austin, TX P1114: Bioinformatics: Databases - Even The Functional Annotation of Animal Genomes, Data Standards, Annotation and Sharing

Laura Clarke1, Alan L Archibald2, Paul Flicek1, David Burt2, David Hume2, Douglas Vernimmen2, Mick Watson2, Mario Caccamo3, Matt Clark3, Federica Di-Palma3, David Swarbreck3 and The FAANG Consortium1, (1)European Molecular Biology Laboratory, Cambridge, United Kingdom, (2)The Roslin Institute and R(D)SVS, University of Edinburgh, Midlothian, United Kingdom, (3)The Genome Analysis Centre, Norwich, United Kingdom P1115: Bioinformatics: Databases - Odd Annotation of Laurasiatheria Genomes By National Center for Biotechnology Information (NCBI)

Shashikant Pujar1, Bhanu Rajput1, Francoise Thibaud-Nissen2, Terence D Murphy2, Paul Kitts3 and Kim D Pruitt2, (1)NCBI, National Institutes of Health, Bethesda, MD, (2)National Center for Biotechnology Information (NCBI/NLM/NIH), Bethesda, MD, (3)NIH/NLM/NCBI, Bethesda, MD

P1116: Bioinformatics: Databases - Even RNA-Seq to Expand Pathway Coverage in the Archosaurs

Colin Kern, Carl J Schmidt and Liang Sun, University of Delaware, Newark, DE P1117: Bioinformatics: Databases - Odd An Integrated Annotation Data Warehouse at the Hymenoptera Genome Database

Aditi Tayal, Deepak R Unni, Colin M Diesh, Darren E Hagen and Christine G Elsik, Division of Animal Sciences, University of Missouri, Columbia, MO P1118: Bioinformatics: Databases - Even The i5k Workspace@NAL - Enabling Genomic Data Access, Visualization, and Curation of Arthropod Genomes

Monica Poelchau1, Christopher Childers1, Gary Moore1, Vijaya Tsavatapalli1, Jay D Evans2, Chien-Yueh Lee3, Han Lin3, Jun-Wei Lin4 and Kevin Hackett5, (1)USDA/Agricultural Resarch Service/National Agricultural Library, Beltsville, MD, (2)USDA ARS Bee Research Lab, Beltsville, MD, (3)Graduate Institute of Biomedical Electronics and Bioinformatics, Taipei, Taiwan, (4)Graduate Institute of Electrical Engineering, Taipei, Taiwan, (5)USDA-ARS, Beltsville, MD

295

P1119: Bioinformatics: Databases - Odd Browsing and Comparing Genomes Using the Gramene/Ensembl Plants Browser

Joshua Stein1, Sharon Wei1, Marcela Karey Monaco1, Andrew Olson1, Sunita Kumari1, Jerry Lu1, Joseph Mulvane1, Jim Thomason1, Ken Youens-Clark1, Dan Bolser2, Arnaud Kerhornou3, Paul J Kersey4 and Doreen Ware5, (1)Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, (2)EMBL -The European Bioinformatics Institute, Hinxton, United Kingdom, (3)EMBL-EBI, Cambridge, United Kingdom, (4)EMBL - The European Bioinformatics Institute, Cambridge, United Kingdom, (5)Cold Spring Harbor Laboratory/USDA-ARS, Cold Spring Harbor, NY P1120: Bioinformatics: Databases - Even National Center for Biotechnology Information Resources for Plant Genomics

Brian Smith-White1, Svetlana Iazvovskaia2, Anjana Raina Vatsan1, Terence Murphy3, Ilene Mizrachi1, Valerie Schneider1 and Kim D Pruitt1, (1)National Center for Biotechnology Information (NCBI/NLM/NIH), Bethesda, MD, (2)NCBI, Bethesda, MD, (3)NIH/NLM/NCBI, Bethesda, MD P1121: Bioinformatics: Databases - Odd Plant Genome Database Japan (PGDBj) in 2015: A Comprehensive Database Covering Information of Plant Genome-Related Databases in Japan

Hisako Ichihara1, Erika Asamizu1, Akihiro Nakaya2, Yasukazu Nakamura1, Hideki Hirakawa1 and Satoshi Tabata1, (1)Kazusa DNA Research Institute, Kisarazu, Japan, (2)Osaka University, Osaka, Japan

P1122: Bioinformatics: Databases - Even Plant Omics Data Center (PODC) : The Integrated Web Repository for Intra- and Interspecies Gene Expression Networks

Tomoyuki Takano1, Shin Terashima1, Hajime Ohyanagi2, Maasa Kanno3, Yohei Sasaki1, Koji Yokoyama2, Koichiro Aya4, Keita Suwabe5, Go Suzuki6, Masao Watanabe7, Makoto Matsuoka4 and Kentaro Yano3, (1)School of Agri, Meiji University, Kawasaki, Kanagawa, Japan, (2)School of Agri, Meiji University, Kawasaki, Japan, (3)School of Agri, Meiji University, CREST, JST, Kawasaki, Japan, (4)Bioscience and Biotechnology Center, Nagoya University, Nagoya, Japan, (5)Mie University, Tsu, Japan, (6)Osaka Kyoiku University, Kashiwara, Japan, (7)Tohoku University, Sendai, Miyagi, Japan P1123: Bioinformatics: Databases - Odd An Ontology Approach to Comparative Phenomics in the Plants: Arabidopsis, Tomato, Maize, Rice, Soybean and Medicago

Lisa Harper1, Anika Oellrich2, Ramona Walls3, Ethalinda Cannon4, Steven B Cannon5, Laurel Cooper6, Jack Gardiner4, Georgios Gkoutos7, Mingze He4, Robert Hoehndorf8, Pankaj Jaiswal6, Johnny Lloyd9, Scott R Kalberer5, David Meinke10, Naama Menda11, Laura Moore12, Rex Nelson5, Anuradha Pujar13, Carolyn J Lawrence14 and Eva Huala15, (1)USDA ARS, Albany, CA, (2)Wellcome Trust Sanger Institute, Hinxton, United Kingdom, (3)The iPlant Collaborative, Tucson, AZ, (4)Iowa State University, Ames, IA, (5)USDA-ARS-CICGRU, Ames, IA, (6)Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR, (7)Computer Science Department, Aberystwyth University, Aberystwyth, United Kingdom, (8)King Abdullah University of Science & Technology, Thuwal, Saudi Arabia, (9)Michigan State University, East Lansing, MI, (10)Oklahoma State University, Stillwater, OK, (11)Boyce Thompson Institute for Plant Research, Ithaca, NY, (12)Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, (13)Cornell University, Ithaca, NY, (14)Iowa State University, Ames, IA 50011, IA, (15)Phoenix Bioinformatics, Redwood City, CA

P1124: Bioinformatics: Databases - Even Deploying and Maintaining Large Intermine Implementations: Phytomine at Phytozome

Joseph W Carlson, Sajeev Batra, Jeremy L Phillips, Richard D Hayes, Shengqiang Shu, David M Goodstein and Daniel S Rokhsar, DOE Joint Genome Institute, Walnut Creek, CA P1125: Bioinformatics: Databases - Odd Data Mining in Plant Omics Data Center Suggests Conserved Gene Expression Networks of Molecular Chaperone and Protein Disulfide Isomerase Genes in Different Organs

Toru Kudo1, Tomoyuki Takano1, Shin Terashima1, Masaaki Kobayashi1, Maasa Kanno1, Kyoko Morimoto1, Hiromi Kanegae1, Soichi Ozaki1, Yohei Sasaki1, Misa Saito1, Satomi Asano1, Koji Yokoyama1, Koichiro Aya2, Keita Suwabe3, Go Suzuki4, Masao Watanabe5, Makoto Matsuoka2, Hajime Ohyanagi1 and Kentaro Yano1, (1)School of Agri, Meiji University, Kawasaki, Japan, (2)Bioscience and Biotechnology Center, Nagoya University, Nagoya, Japan, (3)Mie University, Tsu, Japan, (4)Osaka Kyoiku University, Kashiwara, Japan, (5)Tohoku University/Life Sciences, Sendai, Japan P1126: Bioinformatics: Databases - Even Gene Family Construction and Ortholog Determination in Phytozome

Jeremy L Phillips, Joseph W Carlson, Sajeev Batra, David M Goodstein and Daniel S Rokhsar, DOE Joint Genome Institute, Walnut Creek, CA

P1127: Bioinformatics: Databases - Odd Facilitating Efficient Knowledge Management and Discovery in the Agronomic Sciences

Aravind Venkatesan, Institut de Biologie Computationnelle, Montpellier, France P1128: Bioinformatics: Databases - Even GnpIS-Asso : A Generic Database for Managing and Exploiting Plant Genetic Association Studies Results Using High Throughput Genotyping and Phenotyping Data

Delphine Steinbach1, Guillaume Merceron2, Célia Michotey2, Raphael Flores1, Nacer Mohellibi1, Cyril Pommier1, Christopher Sauvage3, Stephane Nicolas4, Pierre Dubreuil5 and Jacques Le Gouis6, (1)INRA - URGI, Versailles, France, (2)INRA URGI, Versailles, France, (3)INRA GAFL, Montfavet, France, (4)INRA UMRGV, Gif sur Yvette, France, (5)Biogemma compagny, Chappes, France, (6)INRA GDEC, clermont ferrand, France P1129: Bioinformatics: Databases - Odd KDDart Platform for Data Integration in Pre-Breeding, Breeding and Ecology

Grzegorz Uszynski, Puthick Hok, Brian Pierce, David Hunter, Aneal Chandra, Stanley Wijoyo, Manil Chaudhary, Brad Lanham, Frank Detering, Krzysztof Kurczynski and Andrzej Kilian, Diversity Arrays Technology Pty Ltd (DArT PL), Canberra, Australia

296

P1130: Bioinformatics: Databases - Even TAIR as a Model for Database Sustainability

Eva Huala1, Donghui Li1, Tanya Z Berardini1,2 and Robert Muller1, (1)Phoenix Bioinformatics, Redwood City, CA, (2)Phoenix Bioinformatics, Stanford, CA P1131: Bioinformatics: Databases - Odd DNA Polymorphism Database from New-Generation Sequence Read Archive and Analytical Workflow

Takako Mochizuki1, Yasuhiro Tanizawa1, Takatomo Fujisawa1, Naruo Nikoh2, Atsushi Toyoda3, Asao Fujiyama3, Nori Kurata4, Hideki Nagasaki1, Tokurou Shimizu5, Eli Kaminuma1 and Yasukazu Nakamura1, (1)Genome Informatics Laboratory, NIG, ROIS, Shizuoka, Japan, (2)Liberal Arts, OUJ, Chiba, Japan, (3)Comparative Genomics laboratory, NIG, ROIS, Shizuoka, Japan, (4)Plant Genetics Laboratory, National Institue of Genetics, Shizuoka, Japan, (5)NARO Institute of Fruit Tree Science, Shizuoka, Japan P1132: Bioinformatics: Databases - Even Grass Genomes in Ensembl Plants

Paul J Kersey, EMBL - The European Bioinformatics Institute, Cambridge, United Kingdom

P1133: Bioinformatics: Databases - Odd In silico Studies on Crk Genes in Different Plant Species - Arabidopsis, Populus Etc

Pawel Burdiak, Department of Plant Breeding, Genetics and Biotechnology; Warsaw University of Life Sciences, Warsaw, Poland, Aleksia Vaattovaara, Department of Biosciences; University of Helsinki, Helsinki, Finland, Michael Wrzaczek, Department of Biosciences, University of Helsinki, Helsinki, Finland and Stanislaw Karpinski, Warsaw University of Life Sciences, Warsaw, Poland P1134: Bioinformatics: Databases - Even PlabiPD - Leveraging Big Data for Plant Research

Marie E Bolger, forschungszentrum jülich, jülich, Germany, Rainer Schwacke, forschungszentrum jülich, Juelich, Germany and Bjorn Usadel, Forschungzentrum Juelich & RWTH Aachen, Aachen, Germany P1135: Bioinformatics: Databases - Odd CyMSatDB: The Globe Artichoke (Cynara cardunculus var scolymus) Microsatellite Database

Ezio Portis1, Flavio Portis2, Luisa Valente2, Silvia Gianoglio1, Fabio Cericola3, Sergio Lanteri1 and Alberto Acquadro1, (1)DISAFA - Plant Genetics and Breeding, University of Torino, Grugliasco (Torino), Italy, (2)Yebokey – User Experience Design and Web Development, Torino, Italy, (3)Molecular Biology and Genetics, Aarhus University, Tjele, Denmark

P1136: Bioinformatics: Databases - Even The Construction of Genome Annotation Database for Liverwort

Hideki Nagasaki, Genome Informatics Laboratory, NIG, ROIS, Mishima, Shizuoka, Japan P1137: Bioinformatics: Software - Odd miRseqViewer: Multi-panel visualization of sequence, structure and expression for analysis of microRNA sequencing data

Insu Jang1, Seongjin Park2, Jin Ok Yang3 and Byungwook Lee3, (1)Korea Research Institute of Bioscience and Biotechnology, Daejeon, South Korea, (2)Korea Research Institute Bioscience and Biotechnology(KRIBB), Daejeon, South Korea, (3)KRIBB, Daejeon, South Korea P1138: Bioinformatics: Software - Even The DOE Systems Biology Knowledgebase: Progress Toward a System for Collaborative and Reproducible Inference and Modeling of Biological Function in Plant Research

Robert W Cottingham1, Doreen Ware2, Dave Weston1, James Gurtowski3, Fei He4, Rashmi Jain5, Vivek Kumar3, Sunita Kumari6, Srividya Ramakrishnan3, Priya Ranjan7, Samuel M D Seaver8, Jim Thomason3, Shinjae Yoo4, Christopher Henry9, Pamela Ronald10, Michael Schatz3, Sergei Maslov4, Rick Stevens8 and Adam Arkin11, (1)Oak Ridge National Laboratory, Oak Ridge, TN, (2)Cold Spring Harbor Laboratory/USDA-ARS, Cold Spring Harbor, NY, (3)Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, (4)Brookhaven National Laboratory, Upton, NY, (5)UC-Davis, Davis, CA, (6)Cold Spring Harbor Laboratory, West Lafayette, IN, (7)Oak Ridge National Laboratory; University of Tennessee, Oak Ridge, TN, (8)Argonne National Laboratory, Argonnne, IL, (9)Argonne National Laboratory, Argonne, IL, (10)University of California, Davis, Davis, CA, (11)Lawrence Berkeley National Laboratory, Berkeley, CA

P1139: Bioinformatics: Software - Odd ampliconDIVider: Detection of CRISPR-Induced Variants in PCR Amplicons - Zebrafish

Matthew C LaFave, National Human Genome Research Institute, NIH, Bethesda, MD P1140: Bioinformatics: Software - Even POTION: An End-to-End Pipeline for Positive Darwinian Selection Detection in Genomic Scale Data through Phylogenetic Comparison of Protein-Coding Genes

Jorge A Hongo, Unicamp - University of Campinas, campinas, Brazil and Francisco P Lobo, Embrapa Informática Agropecuária, Campinas, SP, Brazil P1141: Bioinformatics: Software - Odd A GUI Application "CA Plot Viewer" for Large-Scale Gene Expression Analysis with Next-Generation Sequencing Technology

Kentaro Yano, Tomoyuki Takano, Shin Terashima and Yukino Nakamura, School of Agri, Meiji University, Kawasaki, Japan P1142: Bioinformatics: Software - Even Sequence Viewer and Genome Workbench - Sequence Display and Analysis Tools for Eukaryotes and Prokaryotes

Kim D Pruitt1, Robert Falk2, Michael DiCuccio3, Terence Murphy2 and Anatoliy Kuznetsov3, (1)National Center for Biotechnology Information (NCBI/NLM/NIH), Bethesda, MD, (2)NIH/NLM/NCBI, Bethesda, MD, (3)National Center for Biotechnology Information, Bethesda, MD

297

P1143: Bioinformatics: Software - Odd DNA Subway Yellow and Blue Lines: TEs, Gene Discovery and DNA Barcoding

James Burnette, University of California, Riverside, Riverside, CA P1144: Bioinformatics: Software - Even Analysing SNP Consequences on Genes and Proteins with Ensembl's Variant Effect Predictor

Emily Perry, European Bioinformatics Institute (EMBL-EBI), Hinxton, United Kingdom P1145: Bioinformatics: Software - Odd Geneious R8: A Bioinformatics Platform for Biologists

Christian Olsen1, Kashef Qaadri1, Richard Moir2, Matt Kearse2, Simon Buxton2, Matthew Cheung2, Jonas Kuhn2, Steven Stones-Havas2 and Chris Duran2, (1)Biomatters, Inc, Newark, NJ, (2)Biomatters, Ltd, Auckland, New Zealand P1146: Bioinformatics: Software - Even Merging Data for Correlation and Network-Based Analysis Using GeneSpring 13

Dipa Roy Choudhury, Strand Scientific Intelligence, SAN FRANCISCO, CA and Antoni Wandycz, Agilent Technologies, Santa Clara, CA

P1147: Bioinformatics: Software - Odd Exploring the Structural Basis of the Genotype and Phenotype Relationship with Public Data and Molecule WorldTM on the iPad

Todd Smith and Sandra Porter, Digital World Biology, Seattle, WA P1148: Bioinformatics: Software - Even SOGO: A Novel Research Framework for Crop and Livestock Genome Studies

Koji Doi1, Elena Solovieva1, Yumiko Teramoto1, Tomomi Ishikawa1, Hiroshi Yasue1, Akitoshi Goto2 and Akio Miyao1, (1)National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan, (2)NARO Institute of Crop Science, Tsukuba, Ibaraki, Japan P1149: Bioinformatics: Software - Odd Flotilla: An Open-Source Toolkit for Single-Cell RNA-Seq Data Analysis in Multiple Organisms

Michael T Lovci, Olga B Botvinnik, Patrick Liu, Boyko Kakaradov, Leen Jamal Schafer, Yan Song and Gene W Yeo, University of California, San Diego, La Jolla, CA P1150: Bioinformatics: Software - Even fRNAkenstein: A Web-Based Interface for a Robust RNA Seq Analysis

Allen Hubbard, Wayne Treible, Richard VN Davis and Carl J Schmidt, University of Delaware, Newark, DE

P1151: Bioinformatics: Software - Odd A Comparison of Transcript Discovery with Different de novo Assembly Software Tools

Le-Shin Wu, NCGAS, Indiana University, Bloomington, IN and Keithanne Mockaitis, Department of Biology, Indiana University, Bloomington, IN P1152: Bioinformatics: Software - Even Blast2GO Revisited: State of the Art in Functional Annotation and Analysis of Non-Model Organisms

Stefan Götz, BioBam Bioinformatics SL, Valencia, Spain P1153: Bioinformatics: Software - Odd GenSAS: A Web-Based Platform for Automated and Manual Curation of Genomic Sequence

Stephen P Ficklin1, Taein Lee1, Jodi L Humann1, Chun-Huai Cheng1, Jill Wegrzyn2, David Neale3 and Dorrie Main1, (1)Washington State University, Pullman, WA, (2)University of Connecticut, Storrs, CT, (3)Dept Plant Sciences University of California, Davis, CA P1154: Bioinformatics: Software - Even WebApollo 20: A Scalable, Distributed Sequence Annotation Editor for Multiple Genomes

Nathan A Dunn1, Monica C Munoz-Torres2, Colin Diesh3, Deepak Unni4, Christine G Elsik4, Ian Holmes5 and Suzanna Lewis1, (1)Berkeley Bioinformatics Open-source Projects, Berkeley, CA, (2)Lawrence Berkeley National Laboratory, Walnut Creek, CA, (3)Division of Animal Sciences, University of Missouri, Columbia, MO, (4)S134D Animal Science Research Center, Columbia, MO, (5)Department of Bioengineering, Berkeley, CA

P1155: Bioinformatics: Software - Odd LAILAPS and e!DAL: Explore Genome Annotations and Publish Research Data

Uwe Scholz, Daniel Arend, Jinbo Chen, Christian Colmsee, Maria Esch and Matthias Lange, Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Stadt Seeland, Germany P1156: Bioinformatics: Software - Even Resources for Advanced Bioinformaticians Working in Plant and Animal Genomes with SMRT Sequencing

Joseph Karalius, Pacific Biosciences, Menlo Park, CA P1157: Bioinformatics: Software - Odd An Application Programming Interface (API) for Programmable Access to Animal QTLdb

Zhiliang Hu1, James E Koltes1, Eric Fritz-Waters1, Carissa Park2 and James M Reecy1, (1)Department of Animal Science, Iowa State University, Ames, IA, (2)Iowa State University, Ames, IA P1158: Bioinformatics: Software - Even FarmCPU: An R Package of Genome-Wide Association Study for Big Data

Xiaolei Liu1, Bin Fan1, Edward S Buckler2 and Zhiwu Zhang3, (1)Huazhong Agricultural University, Wuhan, China, (2)Institute for Genomic Diversity, Cornell University, Ithaca, NY, (3)Washington State University, Pullman, WA

298

P1159: Bioinformatics: Software - Odd Automated de novo Transcriptome Analysis of Eukaryotic Organisms

Andrea Waksmunski1, Tessa Pierce2 and Terry Gaasterland2, (1)Juniata College, Huntingdon, PA, (2)University of California - San Diego and Scripps Institution of Oceanography, La Jolla, CA P1160: Bioinformatics: Software - Even solGS: A Web-Based Tool for Genomic Selection

Isaak Y Tecle, Naama Menda and Lukas Mueller, Boyce Thompson Institute for Plant Research, Ithaca, NY P1161: Bioinformatics: Software - Odd A Comprehensive Method and Tool for Identifying Conserved Cis-Element Motifs on the Basis of Large-Scale Gene Expression and Sequence Data

Yohei Sasaki1, Kentaro Yano1, Hajime Ohyanagi1, Tomoyuki Takano1, Masaaki Kobayashi1, Shin Terashima1, Naoki Yamamoto1, Masato Otani2 and Eiji Nambara3, (1)School of Agri, Meiji University, Kawasaki, Kanagawa, Japan, (2)Sch of Cell & Systems Biology,Toronto Univ, Toronto, ON, Canada, (3)Dept of Cell & Systems Biology, University of Toronto, Toronto, ON, Canada

P1162: Bioinformatics: Software - Even Dealing with Statistical Interactions in Plant Breeding within the LABKEY Software

Julie Soula1, Sébastien Bardet1, Patrick Vincourt2, Jean-Marc Bernard3 and Frédéric Royer3, (1)DORIANE Research Software and Services, Nice, France, (2)Open-Source-Biology, Toulouse, France, (3)Biosearch Data Management, Nice, France P1163: Bioinformatics: Software - Odd BioGPU: A High Computation Performance Tool for Genome-Wide Association Study

Meng Huang, Washington State University, Pullman, WA P1164: Bioinformatics: Software - Even Improving the Alternative Splicing Annotation of Plant Genomes

Li Song, Johns Hopkins University, Baltimore, MD and Liliana Florea, Johns Hopkins University School of Medicine, Baltimore, MD P1165: Bioinformatics: Software - Odd An Elegant Solution to Automate Data Analysis for Axiom® Genotyping Arrays

MariEllen Cottman, Jae Brodsky, Ali Pirani, Kevin Leung, Breck Ohlson, Sangitaq Patil, Raymond Wheeler, Anthony Kosky, David Le, Najeeb Hashmi, Thy Hoang, Fue Thao, Richard Sating, Vlad Libershteyn and John Burrill, Affymetrix, Inc, Santa Clara, CA

P1166: Bioinformatics: Software - Even Heap: A SNPs Detection Tool for NGS Data with Special Reference to GWAS and Genomic Prediction

Masaaki Kobayashi1, Hajime Ohyanagi1, Hideki Takanashi2, Atsushi J Nagano3, Hitoshi Tainaka2, Tsuyoshi Tokunaga4, Takashi Sazuka5, Hiroyoshi Iwata2, Nobuhiro Tsutsumi2 and Kentaro Yano1, (1)School of Agriculture, Meiji University, CREST, JST, Kawasaki, Kanagawa, Japan, (2)Agricultural and Life Sci, The Univ of Tokyo, CREST, JST, Tokyo, Japan, (3)Center for Ecological Research, Kyoto Univ, PRESTO, JST, Otsu, Japan, (4)Earth Note Co Ltd, CREST, JST, Nago, Japan, (5)Nagoya Univ, CREST, JST, Nagoya, Japan P1167: Bioinformatics: Software - Odd Circular RNA Detection in the Transcriptomes of Various Species

Lennart Opitz and Catharine Aquino Fournier, Functional Genomics Center Zurich, ETH/UZH, Zurich, Switzerland P1168: Bioinformatics: Software - Even Improving Maker Gene Annotations in Grasses through the Use of GC Specific Hidden Markov Models

Megan J Bowman and Kevin L Childs, Michigan State University, East Lansing, MI P1169: Bioinformatics: Algorithms - Odd Fusion Gene Detection with Soft-Clipping Reads from Exome Sequencing Data

Jin Ok Yang, KRIBB, Daejeon, South Korea

P1170: Bioinformatics: Algorithms - Even Java Merging Copy Number Variants (JM-CNV): A New Algorithm for Identifying Copy Number Variant Regions (CNVR)

Joaquim Manoel da Silva, Universidade do Estado de Mato Grosso, Nova Xavantina, Brazil, Alan Roberto Romaniuc, Embrapa Informática Agropecuária – Laboratório Multiusuário de Bioinformática, Campinas, Brazil, Alexandre R Caetano, Embrapa Recursos Genéticos e Biotecnologia, Brasilia, DF, Brazil, Poliana F Giachetto, Embrapa Informática Agropecuária, Campinas, SP, Brazil and Michel E Beleza Yamagishi, Embrapa Informática Agropecuária, Campinas, SAO PAULO, Brazil P1171: Bioinformatics: Algorithms - Odd An Improved Assembly Algorithm for de novo Circular Genome Reconstruction

Christian Olsen1, Kashef Qaadri1, Richard Moir2, Matt Kearse2, Simon Buxton2, Matthew Cheung2, Jonas Kuhn2, Steven Stones-Havas2 and Chris Duran2, (1)Biomatters, Inc, Newark, NJ, (2)Biomatters, Ltd, Auckland, New Zealand P1172: Bioinformatics: Algorithms - Even Right-Hand-Side Updating Enables Genomic Prediction with Millions of SNPs

Mario PL Calus1, Rianne van Binsbergen1, Marzieh Heidaritabar2, Chris Schrooten3 and Roel F Veerkamp1, (1)Animal Breeding and Genomics Centre, Wageningen UR Livestock Research, Wageningen, Netherlands, (2)Animal Breeding and Genomics Centre, Wageningen University, Wageningen, Netherlands, (3)CRV BV, Arnhem, Netherlands

299

P1173: Bioinformatics: Algorithms - Odd Heuristic Exploitation of Genetic Structure in Marker-Assisted Gene Pyramiding Problems

Herman De Beukelaer1, Geert De Meyer2 and Veerle Fack1, (1)Ghent University, Ghent, Belgium, (2)Bayer CropScience NV, Diegem, Belgium P1174: Bioinformatics: Algorithms - Even Relative Efficacy of GWAS Models for Ordinal Variables

Lucia Gutierrez, College of Agriculture - UDELAR, Montevideo, Uruguay, Agustin Gonzalez-Reymundez, College of Agriculture, Universidad de la Republica - Uruguay, Montevideo, Uruguay and Ariel Castro, College of Agriculture - UDELAR, Paysandu, Uruguay P1175: Bioinformatics: Algorithms - Odd Locally Epistatic Genomic Relationship Matrices for Genomic Association and Prediction

Deniz Akdemir, Cornell University, Ithaca, NY P1176: Bioinformatics: Algorithms - Even Multi-Allelic Haplotype Model to Integrate Functional Genomic Information with Genomic Prediction and Variance Component Estimation

Yang Da1, Chunkao Wang1, Cheng Tan1, Dzianis Prakapenka1, Miku Shigematsu1, John Garbe2 and Li Ma3, (1)Department of Animal Science, University of Minnesota, Saint Paul, MN, (2)Minnesota Supercomputer Institute, University of Minnesota, Minneapolis, MN, (3)Department of Animal and Avian Sciences, University of Maryland, College Park, MD

P1177: Bioinformatics: Algorithms - Odd Fast and Deterministic Linkage Mapping of Polyploids Using an Approximate Calculation of Recombination Frequencies

Fabian Grandke, Genetwister Technologies BV, Wageningen, Netherlands P1178: Bioinformatics: Algorithms - Even Recovering Power in Association Mapping Panels with Variable Levels of Linkage Disequilibrium

Renaud Rincent, INRA, Versailles, France P1179: Bioinformatics: Algorithms - Odd EM-Based Bayesian Multinomial Logistic Regression for Unordered Multiple Categories with High-Dimensional Genomic Data

Takeshi Hayashi, NARO Agricultural Research Center (NARC), Tsukuba, Japan and Hiroyoshi Iwata, The University of Tokyo, Tokyo, Japan P1180: Bioinformatics: Algorithms - Even Mixed Model Approach for Genotypic Imputation

Alencar Xavier, Katy Martin Rainey and William Muir, Purdue University, West Lafayette, IN

P1181: Bioinformatics: Algorithms - Odd Separating DIP-Seq Signals through Independent Component Analysis - Arabidopsis thaliana

Greg Zynda1, Jawon Song2, Emily Markham3, Matt Vaughn2 and Linda Hanley-Bowdoin4, (1)Texas Advanced Computing Center - University of Texas, Austin, TX, (2)Texas Advanced Computing Center, Austin, TX, (3)North Carolina State University, Raleigh, NC, (4)NC State University, Raleigh, NC P1182: Bioinformatics: Algorithms - Even The DNA Integrity Number: A Novel Approach for Objective Integrity Classification of Genomic DNA Samples

Solange Borg1, Melissa Huang Liu1, Barry McHoull2, Marcus Gassmann3, Adam Inche2, Isabell Pechtl4 and Eva Schmidt5, (1)Agilent Technologies, La Jolla, CA, (2)Agilent Technologies, Edinburgh, United Kingdom, (3)Agilent Technologies, Inc, Waldbronn, Germany, (4)Agilent Technologies, 76337, Germany, (5)Agilent Technologies, Waldbronn, Germany P1183: Bioinformatics: Algorithms - Odd A Workflow for the Analysis of Contigs from the Metagenomic Shotgun Assembly of SMRT® Sequencing Data

Richard Hall1, Meredith Ashby1, Brett Bowman1, Cheryl Heiner1, Sudeep Mehrotra2, Nicoleta Juretic2, Jessica Wasserscheid2 and Ken Dewar2, (1)Pacific Biosciences, Menlo Park, CA, (2)McGill University, Montreal, QC, Canada

P1184: Bioinformatics: Algorithms - Even MAAB: A Motif and Amino-Acid Bias Pipeline to Identify Both Intrinsically Disordered and Repetitive Hydroxyproline-Rich Glycoproteins (HRGPs) in 1000 Plant Transcriptomes

Andrew M Cassin1, Kim L Johnson1, Monika S Doblin1, Andrew Lonsdale1, Antony Bacic1 and Carolyn J Schultz2, (1)The University of Melbourne, Parkville, Australia, (2)The University of Adelaide, Glen Osmond, Australia P1185: Bioinformatics: Algorithms - Odd Assessing Allelic Configuration Models in Fixed Ploidy Variant Calling Using R

Jasmin Zohren1, Igor Kardaisky2, Kare Lehmann Nielsen3, Anika Joecker2 and Richard Buggs1, (1)Queen Mary University of London, London, United Kingdom, (2)Qiagen Aarhus, Aarhus C, Denmark, (3)Aalborg University, Aalborg, Denmark P1186: Bioinformatics: Algorithms - Even Detection and Characterization of Copy Number Variations and Complex Genomic Rearrangements in Human Subjects Using Nanochannel Genome Mapping Technology

Zeljko J Dzakula, Warren Andrews, Ernest Lam, Thomas Anantharaman, Alex Hastie and Han Cao, BioNano Genomics, San Diego, CA P1187: Bioinformatics: Algorithms - Odd Bayesian Multi-Trait Methods for Genome-Wide Association and Prediction Experiments of Arbitrary Complexity

Anthony Greenberg, Jason Mezey, Susan McCouch and Jean-Luc Jannink, Cornell University, Ithaca, NY

300

P1188: Bioinformatics: Algorithms - Even Characterization of an Integrative Model for Candidate Gene Selection from Genomic Data with Simulated Data Analysis

Brian Sayre1, Ornogeah Wurah1 and James M Reecy2, (1)Virginia State University, Petersburg, VA, (2)Department of Animal Science, Iowa State University, Ames, IA P1189: Bioinformatics: Algorithms - Odd Multivariome Analysis Platform

Christiaan Biemond1, Antoine Janssen1, Erwin Datema1, Uwe Thissen1 and Roeland van Ham2, (1)KeyGene, Wageningen, Netherlands, (2)KeyGene NV, Wageningen, Netherlands P1190: Bioinformatics: Algorithms - Even Network-Based Analysis for Large Soil Microbial Genomics Data

Erliang Zeng, University of South Dakota, Vermillion, SD P1191: Bioinformatics: Algorithms - Even Composite Hypothesis Testing of Differential Gene Expression Based on Poisson Models: A Validation Study and Some Considerations

Xiao-Lin Wu, Neogen/GeneSeek, Lincoln, NE, Keyi Wu, Cornell University, Ithaca, NY and Zhihua Jiang, Washington State University, Pullman, WA

P1192: Bioinformatics: Algorithms - Even Inferring the Population Size History of 4 Cattle Breeds Using NGS Data and an Approximate Bayesian Computation Approach

Simon Boitard, INRA, Jouy en Josas, France P1193: Bioinformatics: Algorithms - Odd Enrichment of Statistical Power for Genome-Wide Association Studies

Meng Li1, Xiaolei Liu2, Peter Bradbury3, Jianming Yu4, Yuan-Ming Zhang1, Rory Todhunter5, Edward S Buckler6 and Zhiwu Zhang7, (1)Nanjing Agricultural University, Nanjing, China, (2)Huazhong Agricultural University, Wuhan, China, (3)Cornell University/USDA-ARS, Ithaca, NY, (4)Kansas State University, Manhattan, KS, (5)Cornell University, Ithaca, NY, (6)Institute for Genomic Diversity, Cornell University, Ithaca, NY, (7)Washington State University, Pullman, WA P1194: Bioinformatics: Algorithms - Even Using LTC Software for Physical Mapping and Assisting in Sequence Assembly

Zeev M Frenkel1, Vladimir A Glikson2 and Abraham B Korol1, (1)Institute of Evolution, University of Haifa, Haifa, Israel, (2)MultiQTL Ltd, Haifa, Israel

301

C01: Computer Demo 1 The European Variation Archive at EMBL-EBI

Gary Saunders, European Bioinformatics Institute (EMBL-EBI), Hinxton, United Kingdom C02: Computer Demo 1 WebApollo 20: A Scalable, Distributed Sequence Annotation Editor

Nathan A Dunn1, Monica C Munoz-Torres2, Colin Diesh3, Deepak Unni4, Christine G Elsik4, Ian Holmes5 and Suzanna Lewis1, (1)Berkeley Bioinformatics Open-source Projects, Berkeley, CA, (2)Lawrence Berkeley National Laboratory, Walnut Creek, CA, (3)Division of Animal Sciences, University of Missouri, Columbia, MO, (4)S134D Animal Science Research Center, Columbia, MO, (5)Department of Bioengineering, Berkeley, CA C03: Computer Demo 1 GenSAS: A Web-Based Platform for Automated and Manual Curation of Genomic Sequence

Stephen P Ficklin1, Taein Lee1, Jodi L Humann1, Chun-Huai Cheng1, Jill Wegrzyn2, David Neale3 and Dorrie Main1, (1)Washington State University, Pullman, WA, (2)University of Connecticut, Storrs, CT, (3)Dept Plant Sciences University of California, Davis, CA

C04: Computer Demo 1 Sequence Viewer and Genome Workbench - Sequence Display and Analysis Tools

Kim D Pruitt1, Robert Falk2, Michael DiCuccio3, Terence Murphy2 and Anatoliy Kuznetsov3, (1)National Center for Biotechnology Information (NCBI/NLM/NIH), Bethesda, MD, (2)NIH/NLM/NCBI, Bethesda, MD, (3)National Center for Biotechnology Information, Bethesda, MD C05: Computer Demo 1 Analysing SNP Consequences on Genes and Proteins with Ensembl's Variant Effect Predictor

Emily Perry, European Bioinformatics Institute (EMBL-EBI), Hinxton, United Kingdom C06: Computer Demo 1 Genomicus: Fast and Intuitive Comparative Genomics in Plant and Animal Genome

Alexandra Louis1, Thi Thuy Nga Nguyen1, Matthieu Muffato2 and Hugues Roest Crollius3, (1)IBENS Paris, Paris, France, (2)EBI, Cambridge, United Kingdom, (3)Ecole Normale Supérieure, Institute of Biology (IBENS), Paris, France C07: Computer Demo 1 BamBam: Genome Sequence Analysis Tools for Biologists

Justin T Page, Zach S Liechty, Mark D Huynh and Joshua A Udall, Brigham Young University, Provo, UT

C08: Computer Demo 2 New Tools for Manual Genome Annotation in Eukaryotes: Zmap/Otterlace and Vega

Toby Hunt, Jane Loveland and Jennifer Harrow, Wellcome Trust Sanger Institute, Cambridge, United Kingdom C09: Computer Demo 2 The Triticeae Toolbox (T3): From the Ground Up

Victoria Carollo Blake1, David E Matthews2, Clay Birkett3, David Hane4 and Jean-Luc Jannink3, (1)USDA ARS WRRC, Albany, CA, (2)USDA ARS, Ithaca, NY, (3)USDA-ARS, Ithaca, NY, (4)University of California / USDA-ARS-WRRC, Albany, CA C10: Computer Demo 2 The Reinvention of MaizeGDB

Carson M Andorf1, Ethalinda Cannon2, John Portwood1, Abhinav Vinnakota2, Venkatanaga Sribalusu2, Lisa Harper3, Mary Schaeffer4, Jack Gardiner5, Bremen M Braun6, Darwin Campbell2, Jacqueline Richter2, Wimalanathan (Gokul) Kokulapalan2, Taner Z Sen7 and Carolyn J Lawrence8, (1)USDA-ARS, Ames, IA, (2)Iowa State University, Ames, IA, (3)USDA ARS, Albany, CA, (4)USDA ARS and University of Missouri, Columbia, MO, (5)Plant Genomics Outreach Consortium, Tucson, AZ, (6)MaizeGDB, Ames, IA, (7)USDA -ARS /Iowa State University, Ames, IA, (8)Iowa State University, Ames, IA 50011, IA

C11: Computer Demo 2 Methods for Collecting, Integrating, and Displaying Complex Genetic Data, Using the Legume Information System and PeanutBase

Steven B Cannon1, Andrew D Farmer2, Scott R Kalberer1, Jugpreet Singh3, Ethalinda Cannon4, Pooja E Umale5, Hrishikesh Lokhande6, Alan Cleary6, Nathan T Weeks1, Vijay Karingula4 and Sudhansu Dash7, (1)USDA-ARS-CICGRU, Ames, IA, (2)National Center for Genome Resources, Santa Fe, NM, (3)ORISE Fellow, USDA-ARS-CICGRU, Ames, IA, (4)Iowa State University, Ames, IA, (5)The National Center for Genome Resources, Santa Fe, NM, (6)NCGR, Santa Fe, NM, (7)Virtual Reality Application Center, Ames, IA C12: Computer Demo 2 Facilitating the Use of Next-Gen Sequence Data for Data-Driven Biology

Tazro Ohta, Hiromasa Ono, Yuki Naito, Takeru Nakazato and Hidemasa Bono, Database Center for Life Science, Mishima, Japan C13: Computer Demo 2 How to Use GDR, the Genome Database for Rosaceae

Sook Jung1, Stephen P Ficklin1, Taein Lee1, Chun-Huai Cheng1, Anna Blenda2, Jing Yu1, Ping Zheng1, Sushan Ru1, Cameron Peace1, Katherine M Evans3, Nnadozie Oraguzie4, Lisa DeVetter1, Albert G Abbott5, Ksenija Gasic5, Mercy Olmstead6 and Dorrie Main1, (1)Washington State University, Pullman, WA, (2)Genetics and Biochemistry, Clemson University, Clemson, SC, (3)Washington State University, Wenatchee, WA, (4)Washington State University, Prosser, WA, (5)Clemson University, Clemson, SC, (6)University of Florida, Gainesville, FL

302

C14: Computer Demo 2 CottonGen: The Community Database for Cotton Genomics, Genetics and Breeding Research

Jing Yu1, Sook Jung1, Chun-Huai Cheng1, Stephen P Ficklin1, Taein Lee1, Ping Zheng1, Don C Jones2, Richard G Percy3 and Dorrie Main1, (1)Washington State University, Pullman, WA, (2)Cotton Incorporated, Cary, NC, (3)USDA-ARS, Southern Plains Agricultural Research Center, College Station, TX C15: Computer Demo 3 GnpIS-Asso : A Generic Database for Managing and Exploiting Plant Genetic Association Studies Results Using High Throughput Genotyping and Phenotyping Data

Delphine Steinbach1, Guillaume Merceron2, Célia Michotey2, Raphael Flores1, Nacer Mohellibi1, Cyril Pommier1, Christopher Sauvage3, Stephane Nicolas4, Pierre Dubreuil5 and Jacques Le Gouis6, (1)INRA - URGI, Versailles, France, (2)INRA URGI, Versailles, France, (3)INRA GAFL, Montfavet, France, (4)INRA UMRGV, Gif sur Yvette, France, (5)Biogemma compagny, Chappes, France, (6)INRA GDEC, clermont ferrand, France C16: Computer Demo 3 HRGRN: A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks

Xinbin Dai, Jun Li, Tingsong Liu and Patrick Xuechun Zhao, The Samuel Roberts Noble Foundation, Ardmore, OK

C17: Computer Demo 3 Wheat3BMine, a Data Warehouse Dedicated to Wheat Chromosome 3B

Thomas Letellier1, Loic Couderc1, Frederic Choulet2, Manuel Spannagl3, Cyril Pommier1, Josep Lluis Gelpi Buchaca4, Paul J Kersey5, Hadi Quesneville1, Delphine Steinbach1 and Michael Alaux1, (1)INRA - URGI, Versailles, France, (2)INRA GDEC, Clermont-Ferrand, France, (3)Institute of Bioinformatics & Systems Biology, MIPS, Neuherberg, Germany, (4)Universitat de Barcelona, Barcelona, Spain, (5)EMBL - The European Bioinformatics Institute, Cambridge, United Kingdom C18: Computer Demo 3 Using the Wheat Tilling Database to Search Mutants of Interest

Hans Vasquez-Gross1, Ksenia Krasileva2, Francine Paraiso2, Xiaodong Wang2, Tyson R Howell2, Paul C Bailey3, Sarah Ayling3, Cristobal Uauy4 and Jorge Dubcovsky2, (1)Department of Plant Sciences, University of California, Davis, Davis, CA, (2)University of California Davis, Davis, CA, (3)The Genome Analysis Centre, Norwich, United Kingdom, (4)John Innes Centre, Norwich, England C19: Computer Demo 3 TreeGenes and CartograTree: Tools for Forest Tree Genomics

Emily Grau, UC Davis, Davis, CA, Hans Vasquez-Gross, University of California Davis, Davis, CA, John Liechty, Department of Plant Sciences, University of California, Davis, Davis, CA, Jacob Zieve, University of California, Davis, Davis, CA, Damian Gessler, University of Arizona, Santa Fe, AZ, David Neale, Dept Plant Sciences University of California, Davis, CA and Jill Wegrzyn, Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT

C20: Computer Demo 3 LegumeIP - an Integrative Platform to Study Gene Function and Genome Evolution in Legumes: Year 3 Update

Jun Li, Xinbin Dai and Patrick Xuechun Zhao, The Samuel Roberts Noble Foundation, Ardmore, OK C21: Computer Demo 3 National Center for Biotechnology Information Resources for Plant Genomics

Brian Smith-White1, Svetlana Iazvovskaia2, Anjana Raina Vatsan1, Terence Murphy3, Ilene Mizrachi1, Valerie Schneider1 and Kim D Pruitt1, (1)National Center for Biotechnology Information (NCBI/NLM/NIH), Bethesda, MD, (2)NCBI, Bethesda, MD, (3)NIH/NLM/NCBI, Bethesda, MD C22: Computer Demo 3 Manage Complex Computations Using Clouds and Containers in iPlant Atmosphere

Nirav Merchant, iPlant Collaborative/University of Arizona, Tucson, AZ, Eric Lyons, University of Arizona, Tucson, AZ and Edwin Skidmore, University of Arizona-iPlant Collaborative, Tucson, AZ

C23: Computer Demo 3 Using the Arabidopsis Information Portal

Jason R Miller1, Chia-Yi Cheng1, Benjamin D Rosen1, Vivek Krishnakumar1, Erik Ferlanti1, Svetlana Karamycheva1, Maria Kim1, Matt Hanlon2, Walter Moreira2, Steve Mock2, Joe Stubbs2, Rion Dooley2, Sergio Contrino3, Julie Sullivan3, Alex Kalderimis3, Gos Micklem3, Matt Vaughn2 and Christopher D Town1, (1)J Craig Venter Institute, Rockville, MD, (2)Texas Advanced Computing Center, Austin, TX, (3)Cambridge University, Cambridge, England C24: Computer Demo 4 Bioinformatic Analysis of Genotype By Sequencing (GBS) Data with NGSEP

Claudia Samantha Perea de La Torre, Juan Fernando De-la-Hoz, Juan Camilo Quintero, Daniel F Cruz and Jorge A Duitama Castellanos, International Center for Tropical Agriculture (CIAT), Cali, Colombia C25: Computer Demo 4 Flotilla: An Open-Source Toolkit for Single-Cell RNA-Seq Data Analysis

Michael T Lovci, Olga B Botvinnik, Patrick Liu, Boyko Kakaradov, Leen Jamal Schafer, Yan Song and Gene W Yeo, University of California, San Diego, La Jolla, CA C26: Computer Demo 4 The STATegra NGS Experiment Management System

Ana Conesa, Centro Investigacion Principe Felipe, Valencia, Spain

303

C27: Computer Demo 4 "Roll" Your Own Genomics Cluster with Rocks and the XSEDE-Compatible Basic Cluster

Jeremy Fischer, Barbara L Hallock and Carrie L Ganote, Indiana University, Bloomington, IN C28: Computer Demo 4 BioGPU: A High Performance Computing Tool for Genome-Wide Association Studies

Meng Huang, Washington State University, Pullman, WA C29: Computer Demo 4 The DOE Systems Biology Knowledgebase (KBase): Progress Toward a System for Inference and Modeling of Biological Function in Plants

Priya Ranjan, University of Tennessee, Knoxville, Knoxville, TN C30: Computer Demo 4 DNA Polymorphism Database from New-Generation Sequence Read Archive and Analytical Workflow

Takako Mochizuki1, Yasuhiro Tanizawa1, Takatomo Fujisawa1, Naruo Nikoh2, Atsushi Toyoda3, Asao Fujiyama3, Nori Kurata4, Hideki Nagasaki1, Tokurou Shimizu5, Eli Kaminuma1 and Yasukazu Nakamura1, (1)Genome Informatics Laboratory, NIG, ROIS, Shizuoka, Japan, (2)Liberal Arts, OUJ, Chiba, Japan, (3)Comparative Genomics laboratory, NIG, ROIS, Shizuoka, Japan, (4)Plant Genetics Laboratory, National Institue of Genetics, Shizuoka, Japan, (5)NARO Institute of Fruit Tree Science, Shizuoka, Japan

304

A, AshokKumar P0566, P0567 A, Malarvizhi P0954 Abasht, Behnam P0424, W652 Abate, Zewdie A P0637, W393 Abberton, Michael W175 Abbo, Shahal P0611 Abbott, Albert G. C13, P0888, W162,

W326 Abdel-Haleem, Hussein A. P0730 Abdullah, Meilina Ong W556 Abdul Manaf, Mohamad Arif W556 Abebe Bekele, Wubishet P0553, W541 Abelenda, José W736 Abernathy, Brian P0707, W866 Aboul-Naga, Adel M. W026 Abraham, Paul E. W346 Abrahamsen, Mitchell S. P0423 Abrams, Sam M. W828 Abrokwah, Francis W112 Abrouk, Michael P0195, P0589 Abud, Gabriel P0851 Acevedo, Maricelis P0644 Acharya, Ananta W296 Acharya, Charlotte P0873, P0882, W012 Achayra, Ananta W078 Acosta, Juan J. P0979 Acquadro, Alberto P1135 Adachi, Shunsuke P0497 Adam, Emma N. P0334 Adam, Gerhard P0130 Adam-Blondon, Anne-Francoise W421 Adams, Byron P1020 Adetunji, Modupeore P0394 Adhikari, Badri W128 Adhikari, Sajag P0719 Affolter, Verena P0327 Aflitos, Saulo P0871 Agarwal, Gaurav P0206, P0208, P0211,

P0778 Agbessi, Mawussé D.T. W552 Agbottah, Amy P0999 Aggrey, Samuel E. W651 Agnelli, Alberto P1037 Agossou Yao, D. Angelo R. P0998 Agrawal, Shiv Kumar P0763 Ågren, J. Arvid W894 Aguilar, O. Mario P0746 Aguilar Moron, Maria A. P0746 Ahmad, Ali W108, W109 Ahmed, Ahmed H. P0323, P0324 Ahmed, Nasar Uddin P0151 Ahn, Il-Pyung P0510 Ahn, Jong Hwa P0132 Ahn, Sang-Nag P0490 Aiba, Mina P0860 Ainouche, Malika Lily P1056, W015 Ainsworth, Elizabeth A. P0517, P0538,

P0727 Aitken, Karen S. W714 Aitken, Niccy P1023 Aitken, Sally N. W317, W573 Ajmone-Marsan, Paolo P0271 Ajmone Marsan, Paolo W106, W109,

W137, W387

Akagi, Takashi W333, W622, W717 Akama, Satoru P0803 Akashi, Kinya P0939 Akdemir, Deniz P1175, W802 Aken, Bronwen P1002 Akhunov, Eduard P0575, P0589, P0605,

W032, W639, W879 Akhunova, Alina W032 Akond, Masum P0711, P0714 Akpinar, Bala Ani P0591, W879 Akraiko, Tatsiana P0046 AL-Doss, Abdullah A. P0632 Al-Jabri, Maja P0340 Al-Naemi, Fatima W561 AL-Rasheid, Khaled AS. P0323, P0324 Al-Rubaye, Adnan P0422, W672 Al-Samman, Al-Samman P0100 Al-Tobasei, Rafet P0248 Alabady, Magdy S. P0976, W303 Al Abdallat, Ayed P0100, P0621 Al Abri, Mohammed A. P0328 Alam, Mukhtar P0527, P0536, P0545 Alamery, Salman P0824, W604 Alamri, Mohammed P0615, P0627 Alarfaj, Abdullah Abdelaziz P0452 Alaswad, Alaa P0710, P0732 Alaux, Michael C17, P0654, W421, W478, W504

Albarella, Sara W110, W111 Albert, Mark V. P0704 Albert, Victor A. W180 Alberti, Adriana P0597, W473 Alberti, Giorgio P0001, W316 Albertini, Emidio P0753, P1037 Albertsen, Marc C. W192 Albion, Rebecca L. P0155, P0218,

P1066, W347 Albrechtsen, Anders P0323, P0324 Albright, Jessica C W350 Albright, Julie D. P0329 Alcalá, Leodegario Osorio P0594 Aldwinckle, Herb W178 Alexander, Lee W139 Alexandrov, Nickolai W447 Alfama, Françoise W421, W478 Alfoldi, Jessica P1000, W090 AlHazmi, Mohamed Ismail P0471 Ali, Jauhar W173, W777 Ali, M Liakat P0490 Ali, R. Ayesha P0283 Ali, Sajid P0545 Ali, Shahin W114, W115 Alioto, Tyler P0390, P0746 Aljarrah, Mazen P0600 Allaby, Robin G. W241 Allais-Bonnet, Aurélie P0304 Al Lawati, Ali H. P0766 Allen, George C. W267, W741 Allentoft, Morten E. W399 Allison, Gordon G. W076 Allwright, Mike P0001, W316 Almeida Filho, Janeo P0095, P0985 Alonso, Diego P. P0177, P0439 Alonso, Roberto W164

Alós, E. P0667 Alphey, Luke P0433 Alqudah, Ahmad Mohammad I. W881 Alquraishi, Saleh A. P0323, P0324 Altenbach, Susan B. P0186, W677 Altinkut Uncuoglu, Ahu P1036 Altmueller, Janine P0447 Altpeter, Fredy P0010, P0546, P1092, P1093, W084, W625, W813, W814, W833

Aluome, Christelle P1015 Alvarado, Gregorio P0532 Alves, Alexandre Alonso P0007, P0008, W553

Alves, Anderson Luis P0231 Alves, Leonardo Cardoso P0012 Alves-Ferreira, Márcio P0966 Alves Carvalho, Susete P1015 Alwee, Sharifah Shahrul Rabiah Syed

W552, W557 Alzahrani, Khaloud P0412 Amadeu, Rodrigo P0925 Amaral, Elisabete W106 Amarante Guimarães Pereira, Gonçalo

P0213, P0543, W114 Amaya, Iraida P0919, P0920 Amills, Marcel P0356, P0360, P0386,

W137, W442, W575 Amin, Md. Nurul P0763 Amindala, BhanuPrakash P0566 Amiour, Nardjis P0535, W262 Ammar, Karim P0575, W774 Amoako-Attah, Ishmael W115 Amrine, Katherine C.H. W418 Amselem, Joelle W795 Amuge, Teddy P1071 Amundsen, Eric P0467 Amyot, Lisa P0772 An, Shaun W212 An, Yong-Qiang (Charles) W752 An, Yong-Qiang Charles P0700, P0734 Anai, Toyoaki P0706 Anantharaman, Thomas P1186 Andersen, Stig U. P0692, W506 Andersen, Stig Uggerhoj P0776, P0779 Anderson, James V. P0157 Anderson, Justin E. P0703, P0722, W403, W621

Anderson, Lorinda P0849, W689 Anderson, Olin W460, W474 Anderson, Rayna W146 Andersson, Leif P0324 Ando, Akira P0799 Ando, Asako P0373 Ando, Mei P0801 Ando, Tsuyu P0496 Andorf, Carson M C10 Andrade, Alan W180 Andrade, Eduardo W064 Andrade, Larissa Mara P0180 Andrade, Pablo P0549 András, Farkas P0582, P0586 Andreassen, Rune P0237, W040 Andreu, Nuria P0746

305

Andrews, Warren P1186 Andy King, C P0716 Aning, George W770 Anjum, Jasia P0946 Annicchiarico, Paolo W296 Antczak, Douglas P0319, P0323, P0328,

P0340 Antelme, Sebastien W094 Anthony, Nicholas B. P0412, P0414,

P0415 Anthony W Goering, Anthony W W350 Antonio, Baltazar P0485 Antoniou, Eric W088 Antoshechkin, Igor P0454, P1020 Anuradha, G P0788, W212 Anuradha, Kotla P0566, P0567 Anwar, Nadia P0660, P0671, W880 Ao, Risako P0497 Aoki, Koh P0850, P0852 Aoki, Toshio W734 Aprea, Giuseppe W180 Aquino Fournier, Catharine P1167 Aradhya, Mallikarjuna W188, W332 Araneda, Cristian P0260, W045 Aranzana, Maria Jose P0915 Araujo, Ana Claudia Guerra P0741,

P0743, W866 Aravin, Alexei P0123, W728 Arbizu, Carlos P1074 Archibald, Alan L. P0393, P1114, W135, W454

Arellano, Macarena P0062 Arend, Daniel P1155 Arendonk, Johan van P0351 Ariani, Andrea P0754, W219 Arick II, Mark P0343 Arick II, Mark A. P0462, P0465 Arighi, Cecilia P0429 Ariizumi, Tohru P0850 Arkin, Adam P1138 Armstead, Ian W430 Armstrong, Susan P0795 Arnal, Nadege P0070 Arnold, Carolyn P0333 Arnold, Jennifer P. P0465 Aroian, Raffi V. P0454 Arraes, Fabricio B.M. P0725 Arribat, Sandrine W849 Artico, Sinara P0966 Artlip, Timothy P0875, W592 Arumuganathan, Kathiravetpilla P0440 Arundale, Rebecca P0009 Arús, Pere P0915 Arya, Anoop P0350 Asamizu, Erika P1121 Asano, Satomi P1125 Ashby, Meredith P1183 Ashman, Tia-Lynn W711 Ashraf, Bilal H. P1054, W427, W433 Ashrafi, Hamid P0097, P0956 Ashwell, Chris P0394, P0400, P0401,

P0426, W028 Ashwell, Chris M. P0121

Asp, Torben P1050, P1051, P1054, W300, W427, W431, W432, W433, W564

Assis, Lidianne W002 Astruc, Jean-Michel P0379 Atkins, Craig W491 Atkinson, Jonathan P0057, W709 Atlin, Gary P0532, W852 Atokple, Ibrahim P0784, W766, W767 Atri, Chhaya W796 Attene, Giovanna P0753 Aubert, Grégoire P1015, W210 Aung, Banyar P0772 Aury, Jean-Marc P0597, W210, W795 Aury, Jean Marc W473 Austin, Kathleen J. P0378, P0380 Austin, Ryan P0773 Auvray, Benoît W390 Avci, Utku W076 Avila, Felipe P0315, P0321, W269 Avni, Raz P0572 Awad, Wahid P0630 Awan, Faisal Saeed P0946, P1093,

W625 Axen, Heather J. P0113 Axtell, Michael W578 Aya, Koichiro P1122, P1125 Aydagn, Yoseph Beyene P0532 Aydin, Yildiz P1036 AydoÄŸan, Abdulkadir W394 Ayele, Belay T. P0227 Ayling, Sarah C18, P0072, W033, W183,

W313 Ayoub, Mohammam P0670 Ayyappan, Vasudevan P0024, P0759 Azevedo, Gabriel C. W002 Azevedo, Vasco P0459 Azevedo Peixoto, Leonardo de P0085 Azhaguvel, Perumal P1048 Aziz, Irum P0619 Azuma, Akifumi P0878 Babar, Md A. P0523 Babiker, Ebrahiem P0645, W538 Babu, Raman W768 Bachem, Christian W736 Bacher, Blaire W556 Bachlava, Eleni P0950 Bachleda, Nicole W776 Bachtrog, Doris W657 Bacic, Antony P1184 Backlund, Jan Erik W503, W761 Baden, Russell W845 Bader, Rechian W581 Badgett, Marty Ray P0068 Bae, Sangsu P0092 Baenziger, P. Stephen P0603, P0605 Baer, Sara G P1030, W639 Baes, Christine F. P0281 Bagnaresi, Paolo P0587 Bagnato, Alessandro P0285, P0287, P0288

Bagyalakshmi, K. W815 Bahariah, B P0005 Bai, Guihua P0110, P0625, P0634

Bai, Jinhe P0215 Bai, Yang P0895 Bailey, Bryan W114, W115 Bailey, Donovan P0043, P0764, P0775, W484

Bailey, Ernest P0319, P0323, P0339 Bailey, Paul C. C18, W033, W183 Bailey, Rebecca W115 Bailey-Serres, Julia W356 Baillie, Bec P0107 Baily, Malorie P. P0315 Bain, Wendy W146 Baisakh, Niranjan P0194, W898 Bakaher, Nicolas P0870 Baker, Jason P0634 Baker, Robert P0735 Baker, Shannon P0634 Balacescu, Loredana P0526 Balacescu, Ovidiu P0526 Balasuriya, Udeni B. R. P0339 Baldini, Riccardo M. W097 Baldo, Angela M. P0898 Baldwin, Elizabeth A. P0215 Bales, Carmille P0734 Balkwill, Colan G. P0973 Balli, Soniya P0255 Baloyi, Timmy A P0646, P0649 Baltazar, Miriam D. P0509 Balteanu, Valentin Adrian P0386, W442 Balzergue, Sandrine W849 Bamberg, John W248 Ban, Jihye P0421 Ban, Seung Hyun P0896 Ban, Yusuke P0878 Banan, Darshi P0518, P0569 Band, Mark P0031, P0046 Bandeira, Nuno F. W678 Bandelj, Dunja P0104, P0885 Bandillo, Nonoy P0708 Banerjee, Anjan K W718 Banik, Mitali P1039, W291 Banks, Jo Ann P1082 Banks, Travis P0890, P0913, W328 Bannasch, Danika P0327, W270 Bansal, Urmil P0639, P0641, P0642 Banziger, Marianne P0532 Bao, Hua W828 Bao, Lisui P0240 Bapst, Beat P0281 Bar, Einat W227 Bar-Joseph, Ziv W358 Bar-Yaakov, Irit P0901 Barabaschi, Delfina P0587 Barad, Omer P0572, W184, W227 Barak, Simon P0855 Barak, Vered P0636 Barakat, Abdelali P0834 Barakat, Mohamed N. P0627, P0632 Barash, Yoseph W793 Barba, Paola P0873, P0882, W012,

W419 Barbazuk, Brad P0979 Barbe, Valerie P0597, W473, W795 Barbieri, Johanna P0304

306

Barbotte, Laetitia P0377 Barcaccia, Gianni W193 Bardak, Adem P0957 Bardet, Sébastien P1162 Barendse, William W155 Bariana, Harbans P0639, P0641 Barker, Brittany W255 Barker, Michael S. P1086 Barkley, Noelle A. P0784, W392 Barnes, Ian W234 Barnes, Steve W586, W809 Barrell, Daniel P1002 Barrero, Jose W681 Barrios-Perez, Ilse P0538 Barron, Lorna W013 Barros, Beatriz W002 Barry, Cornelius S. P0867 Barry, Kerrie W. P0003, P0570, W567,

W713, W780, W784 Bart, Rebecca P0093 Barth, Susanne W357, W434 Bartha, Denes W634 Bartholomé, Jérôme P0990, P0992, W305

Bartley, Laura P0504, W078 Bartoš, Jan P0195, P0590, P0658 Bartoszewski, Grzegorz W545 Baruca Arbeiter, Alenka P0104 Baruch, Kobi P0572 Bass, Hank W741 Bassi, Daniele P0916, W326 Bassil, Nahla P0906, P0907, P0923,

W335 Bastiaansen, John P0351 Bastianel, Marinês P0929, W161 Bastianelli, Giacomo P0088 Bastow, Ruth W395 Basu-Roy, Sayantani P0849, W689 Bates, Ronald O. W831 Bateson, Maria P0340 Batley, Jacqueline P0469, P0590,

P0782, P0824, W014, W254, W471, W604, W796

Batra, Sajeev P1124, P1126 Battenfield, Sarah D. P0599 Battey, James P0870 Batushansky, Albert P0855, W340 Batzel, Peter W525 Bauck, Stewart P0266 Bauduin, Matthew P0623 Baum, Amy S. P0981, W263 Baum, David A. P0983 Baumgard, Lance H. P0348, W025 Baumgartner, Kendra W418 Baumgartner, Wes P0167 Baute, Gregory J. P0950 Baxter, Ivan P0518, P0569, W746 Bayer, Philipp Emanuel P0816, P0824, W018, W604

Beale, Holly C. P0391 Beattie, Craig W. P0170 Beattie, Gwyn A. W284 Beaubian, Karen P0665 Beaulieu, Jean W319

Beaver, James P0752, W169, W221 Beavis, William D. P0961 Becerra Lopez-Lavalle, L. Becker, Annette P0141, P0797, W616 Bed'hom, Bertrand P0392, P0423 Bedada, Zewdu Edea P0295, P0316 Bednarczyk, Marek P0428 Bedre, Renesh P0194, W898 Beebe, Stephen E. P0752, W221 Beecher, Brian S. P0186, W677 Beeson, Samantha K. P0335 Beier, Sebastian W889 Beilstein, Mark A W486 Beissinger, Tim W388 Beissinger, Timothy P0529, P0531 Bektas, Yasemin P0140 Belamkar, Vikas P0690, W223 Belasque Jr., José P0931 Belcher, Araby P0664 Bellaloui, Nacer P0711 Bellanger, Laurence W180 Bellec, Arnaud P0070, P0074, P0584,

W473 Bellizzi, Maria W606 Bello, Nora P0134, P1030, W639 Bellone, Rebecca P0341 Bellott, Daniel Winston P0322 Bellucci, Elisa P0753 Belser, Caroline P0597, W473 Beltran, Sergi Beltran P0360, W442 Beltran G, Maria F P0062 Belyaeva, Irina W876 Belzile, François P0698 Benatti, Thiago P0550, W812 Benavente, Elena W097 Benazzo, Andrea P0753 Benchimol-Reis, Luciana Lasry P0758 Bendahmane, Abdelhafid W406 Bendixen, Christian P0285 Beneventi, Magda A. P0725 Benevenuto, Juliana P0466 Benidt, Sam P0522 Bennett, Malcolm J. P0057, W709 Bennetzen, Jeffrey L. P0576, W426,

W460, W746 Benning, Christoph W083 Benucci, Gian Maria Niccolò P1037 Berardini, Tanya Z. P1130, W056 Berge, Natalie F. P0169 Berger, Dave K P0544, P1045 Berger, Jens D. W394 Berges, Helene P0070, P0074, P0584,

P0591, P0663, P0796, P0950, W210, W473, W795, W882

Bergonzi, Sara W736 Berkman, Paul J. W714 Berlin, Konstantin W089 Bernard, Jean-Marc P1162 Bernardo, Rex P0530, W747 Bernes, Irene P0458 Berny, Jorge C. P0754 Berri, Mustapha P0363 Berrigan, Rebecca W503, W761 Berry, Simon P0602, W465

Bertelsen, Mads Frost P0323 Bertioli, David P0741, P0743, W866 Bertioli, Soraya W866 Bertolini, Francesca P0344, W823 Bertorelle, Giorgio P0753 Bertrand, Laurie P0597 Bett, Kirstin P0763, W209, W408, W872,

W873 Beuchle, Danielle P0183 Beulé, Thierry W552 Bevan, Michael W030 Bextine, Blake W064, W065 Beydon, Genséric P0070 Bhak, Jong P0274, W397 Bhakta, Mehul P0752, W221 Bhandawat, Abhishek P1053 Bharti, Arvind K. P0767 Bhattacharya, V. Gautam P0690, W223 Bhattacharyya, Madan K. P0810, W605 Bhattarai, Kishor K. P0770 Bhavani, Sridhar P0647, P0677 Bhering, Leonardo Lopes P0085 Bhide, Amey S. P0797 Bhide, Ketaki P0024, P0759, P1073 Bhowmik, Pankaj P0581 Biagetti, Eleonora P0753 Bianco, Erica W156 Biasioli, Franco P0903, W329 Bickhart, Derek P0273, P0277, W107,

W141, W144, W147, W155, W440 Bicknell, Ross P0972 Bidwell, Christopher A. W138 Biemond, Christiaan P1189 Bilgi, Bahay G. P1066, W347 Billiard, Sylvain P0796 Billis, Konstantinos P1002 Billon, Yvon P0168, P0361, P0363 Bilski, Piotr P0148 Bindschedler, Laurence W607 Binns, M.M. P0336 Binns, Matthew M. P0335 Birchler, James A. P0525, W580, W585 Bird, Nicholas P0602, W465 Birkett, Clay C09, P0653, P0656, W501,

W537 Birnbaum, Kenneth D W759 Bisaga, Maciej W540 Bishop, Stephen C. P0293 Bissuel, Christine W265 Biswas, Sudip P0508 Bitocchi, Elena P0753 Bitragunta, Deepak P0697, P0737 Bixley, Matthew J. W390 Bjorkquist, Angelica W028 Blackburn, Harvey P0169, P0279, W142,

W143 Blackman, Benjamin K. P0949, P1034 Blackmon, William J. P0690, W223 Blahut, Johnathon Roger P1018 Blake, Tom P0672 Blanchard, Steven W538 Blanco, Antonio P0575, P0578, P0585,

P0587 Blanco-Ulate, Barbara W418

307

Blanco Pastor, Jose Luis P1032 Blaustein, Leon P0447 Blavet, Nicolas P0086 Blechl, Ann W603 Blechl, Ann E. P0186, W677 Blenda, Anna C13, P0888 Block, Hushton P0165 Blott, S. P0336 Blott, Sarah P0335 Bluhm, Burt H. P0456 Blumwald, Eduardo W566, W769 Bluyssen, Hans P0428 BM, Khadi P0954 Bo, Kailiang P0932 Boase, Murray P0972 Boava, Leonardo P. P0929, W161 Boddicker, Rebecca L. W025 Bodénès, Catherine W795 Bodin, Loys W151 Bodunrin, Abiodun W228 Boerjan, Wout P1042, W293 Boerma, Roger P0730, W776 Boerwinkle, Eric W139, W453, W861 Bogdanove, Adam W607 Bogden, Robert P0030 Bogeat-Triboulot, Marie-Béatrice W308 Bohn, Martin P0477 Boichard, Didier A. P0272, P0304 Boitard, Simon P0270, P1192 Bok, Jin Woo W350 Bolek, Yuksel P0957 Bolger, Marie W060 Bolger, Marie E P1134 Bolin, Jay F. P1078 Boller, Beat W300 Bolser, Dan P1119 Bomba, Lorenzo W109 Bombardier, Lauren P0849, W689 Bombarely, Aureliano P0129, P1083 Bond, Jude W135 Bonetta, Dario P0773 Bonham-Smith, Peta P0143 Bonierbale, Merideth P0846 Bonman, J. Michael P0644, W538 Bonnett, David W774 Bono, Hidemasa C12 Booker, Helen P1039, P1043, W291,

W294 Boote, Kenneth P0752, W221 Borchel, Andreas P0234 Borevitz, Justin O. P0023, P1023 Borg, Solange P1182 Borodovsky, Mark W091, W203 Boroughs, Ben P0682, W536 Borovsky, Dov P0434 Borrell, Andrew K. W682 Bosch, Maurice W076 Boshier, David W313 Bossolini, Eligio P0637, W393, W797 Bosze, Zsuzsanna P0443 Botanga, Christopher P0613 Botella, Miguel A. P0919 Botha, Frederik C W816 Bottje, Walter P0173, W671

Botvinnik, Olga B. C25, P1149 Bouchet, Anne-Sophie W265 Bouchet, Sophie P0554, P0563 Bouffier, Laurent P0990, P0992 Boughman, Jenny W798 Boukar, Ousmane P0784, W766, W767 Bourne, Philip G001 Bousquet, Jean W319 Boutte, Julien P1056, W015 Bouvet, Jean-Marc W554 Bovet, Lucien P0870 Bovina, Riccardo P0657, W508, W705 Bovine Respiratory Disease Consortium

W140 Bovo, Samuele P0344, W823 Bowers, John E. P0950 Bowman, Brett P1183 Bowman, Brian Carter P0608 Bowman, Megan J P1168, W184 Boxall, Suzanna P1069 Boykin, Deborah P0193 Boyko, Adam R. W131, W132 Boyle, Kerry P0635 Boyles, Richard P0552 Braasch, Ingo W525 Bradbury, Peter P0528, P1193 Bradeen, James M. P0891 Braden, Laura M. W438 Bradish, Christine P0923 Bradley, Daniel G. W235, W456 Brady, Siobhan W356 Braeutigam, Andrea P0179 Braithwaite, Evan W539 Brannick, Erin P0424, W652 Braques, Régis P0304 Brashier, Michael P0343 Brasileiro, Ana C. M. P0136, P0741,

P0743 Braun, Bremen M C10 Braun, David M. P0556, W079 Braun, Hans-Joachim W774 Brauning, Rudiger W020, W146, W451, W459

Bräutigam, Andrea P1084, P1085 Bravo, Juliana Pereira P0808, P0996 Bravo, Soraya P0062 Bredeson, Jessen V. W121 Breen, James M. P0233, P0475, P0877,

W041 Breen, Patrick P0976, W303 Brenchley, Rachel P0433, P1069 Brendel, Oliver W305, W308 Brennan, C. W463 Brenton, Zach P0552 Bressiani, José Antonio P0543 Breton, Fréderic W557 Brick, Leslie A. P0755 Brick, Mark A. P0755 Briggs, Robert E. P0119 Briggs, Steven W850 Bright, Lauren Ashley P0343 Brilhante, Osmundo P0966 Brill, Eva P0431 Brinas, Laura P0597

Bristow, Jim W780 Brito, Michael dos Santos P0180 Britt, Anne B. W740 Britto, Dahyana S. W116 Britton, Monica T. W332 Brkljacic, Jelena P0793 Broad Genomics Platform W090 Broccanello, Chiara W804 Brock, Marcus T. W103 Brodsky, Jae P1165 Broggini, Giovanni AL P1104 Brohammer, Alex W184 Brooks, Samantha A. P0328, P0329,

P0331, P0338, P0340 Brooks, Siraprapa P0889 Brouwer, Cory W538 Brouwer, Paul P1084 Brown, C. Titus W653, W786 Brown, Dale P0310 Brown, Judith K W113 Brown, Patrick J. P0018, P0517, P0538,

P0561 Brown, Ryan W538 Brown, Susan P0134, W067, W639 Brown-Guedira, Gina P0672 Brozynska, Marta P0486 Bruce, Heather L. P0165 Bruce, Myron P0189, W352 Brueggeman, Robert S. P0474, P0650,

P0675, P0679, P0680, P0978 Bruggmann, Remy P0526 Brum, Itaraju P0550 Brumbley, Stevens M P0037 Brummer, E. Charles P0767, W078, W296

Brummer, Joe E. P0026, W563 Brunel, Dominique P1015 Brunner, Susanne P0648 Bruno, Laura C. P0027 Brunt, Andrew Van W556 Brusslan, Judy A. P0838, W261 Brutnell, Thomas P. P0058, P0570,

P1016, W344 Bryant, Doug P0923 Bryant, Johnny P1030 Bryant, Stephanie A P0122 Bryant, Stephanie A. W743 Buchanan, Fiona C P0300, P0305 Buchanan, Justin W. P0297 Buck, James P0730 Buckler, Edward S. P0513, P0528,

P0873, P1158, P1193, W123, W567 Buckles, Elizabeth P0340 Buckner, Brent W695 Budak, Hikmet P0591, P0633, W879 Budar, Françoise P0663, W882 Budiman, Muhammad Arief W556 Buell, C. Robin P0842, P0843, W184, W248, W567

Buffalo, Vince W183 Buggs, Richard P1185, W313 Bukhman, Yury V. P0027 Bukowski, Robert P0513 Bukun, Bekir W394

308

Bulli, Peter P0637, W393 Buluç, Aydın W713 Bundy, Joseph P0886 Bundzinsk, Ilara G. P0112, W837 Bunn, David A. W770 Buonaccorsi, Vincent P0236, P0257, W697

Burdiak, Pawel P1133 Buré, Cyril W308 Burešová, Veronika P0582, P0586 Burge, Dylan P1086 Burger, Joseph W227 Burgess, Brandon P0968 Burgess, Diane W632 Burgess, Shane W646 Burgess, Shane C P0343 Burgos-Paz, William W156 Burgueño, Juan P0594, P0596 Burke, John P0555, P0561, W750 Burke, John M. P0950, P0952 Burke, Molly K. W637 Burkholz, Alexandra W809 Burnette, James P1143, W259, W696 Burow, Gloria P0555, P0561, P0738,

W750 Burow, Mark D. P0738 Burrell, Millie W640 Burrill, John P1165 Burris, Jason N. P0021, P0199 Burris, Kellie P. P1097 Burstin, Judith P1015, W210 Bürstmayr, Hermann P0130 Burt, David P1114 Burt, David W. P0393, P0396, P0398 Burton, James W109 Burton, Joshua N. P0044, W144, W200,

W440 Bury, Paul P0663, W882 Busanello, Carlos P0657, W508, W705 Busatto, Nicola P0892, P0893, P0902, P0903, W329

Busch, Anke W791 Bushakra, Jill M. P0923 Busov, Victor W594 Buttazzoni, Luca P0355 Butterfield, Tim W332 Buxton, Simon P1145, P1171 Buyyarapu, Ramesh P0965 Byrne, Stephen P1050, P1051, P1054,

W300, W427, W431, W432, W433, W564

Cabral, Adrian P0618 Cabuk Sahin, Ezgi P1036 Caccamo, Mario P0602, P1114, W313,

W465 Cadle-Davidson, Lance P0873, P0876,

P0882, P0887, P0889, W012, W419 Caetano, Alexandre R. P0231, P0289,

P1170, W038 Caffall, Kerry P1093, W625 Cahoon, Ed W623 Cai, Guohong P0119 Cai, Qing P0098 Cai, Xiwen P0607, W365

Cai, Zhe W703 Caicedo, Ana W097 Caig, Vanessa P0052 Cain, Scott W367, W407 Calderón, M.C. P0667 Calla, Bernarda P0431 Calò, Daniela Giovanna P0344, P0355,

W823 Calus, Mario P.L. P1172 Câmara Ferreira, Francisco P0746,

W201 Camargo, Eduardo L. O. P0543 Cameron, Connor T. P0170, P0767 Cammack, Kristi M. P0378, P0380 Campbell, Benjamin W. P0717 Campbell, Darwin C10 Campbell, Nathan P0081 Campo Sánchez, Sonia W732 Campoy Corbalán, José A. W334 Campuzano, Gaspar Estrada P0594 Camus-Kulandaivelu, Létizia W557 Canario, Laurianne P0168 Candreva, Jason P0546, W814, W833 Canela, Oriol P0356 Canesin, Lucas Eduardo Costa W821 Cannarozzi, Gina P1057 Cannon, Ethalinda C10, C11, P0697,

P0735, P0737, P1123, W487, W611, W613, W877

Cannon, Steven P0699 Cannon, Steven B. C11, P0690, P0693,

P0695, P0697, P0735, P0737, P1123, W223, W403, W487, W613, W866

Cánovas, Angela P0310, P0356, P0360, W442

Cantao, Mauricio P0418 Cantao, Mauricio Egidio P0176, P0358 Cantrell, Bonnie P0296 Cantu, Dario P0637, W393, W418,

W603, W804 Cao, Han P0042, P0077, P0319, P1186 Cao, Heping P0004 Cao, Zhe P1058, W550 Cápal, Petr P0086, P0582, P0586 Capella Gutierrez, Salvador J. P0746,

P0750 Capettini, Flavio P0600 Capitan, Aurélien P0304 Capmbell, Darwin P0516 Capote, Juan W442 Cappellin, Luca P0903 Caputo, P. P0335, P0336 Caramante, Martina P0853 Carareto, Claudia P0948, W182 Carasco-Lacombe, Cathy W557 Carazzolle, Marcelo Falsarella P0213,

P0543 Carbonel, Sérgio Augusto Morais P0758 Carbonell, Jose W164 Cardeno, Charis W332, W568 Cardoso, Marisa P0358 Cardoso, Taina P0356 Cariaga, Kathleen A. W119 Carillier, Céline P0383, W444

Carling, Jason P0052 Carlini-Garcia, Luciana P0547 Carlsen, Steven A. P0474, P0650 Carlson, Craig H. P0003, W315, W720 Carlson, John E. P0969, W304, W312,

W878 Carlson, Joseph W. P1124, P1126,

W409 Carman, John G. W190 Carmo, Valdevino W116 Carneiro, Monalisa S. P0011 Carocha, Victor P0974 Carollo Blake, Victoria C09, P0653, P0656, W501, W537

Carpentier, Sebastien C W070, W679 Carrasco, Basilio P0912, W330 Carrington, James W732 Carson, James P1113 Carstens, Maryke P0544 Carter, Patrick A. P0894 Carty, Helen P0385 Carvalho, Ana P0974 Carvalho, Giselle de P0466 Carvalho, Igor Bacon P0741 Carvalho, Paula V. P0136 Carvalho Andrade, Marcela P0851 Carver, Brett F. P0624 Carver, Jeremy W678 Carville, Jackie P0263 Casadio, Rita P0344, P0575, W823 Casas, Eduardo P0119 Case, Austin J. P0677 Caserta, Raquel P1103 Caseys, Celine W797 Casler, Michael P0023, W429, W567 Caspi, Ron P0129 Cass, Cynthia L. P0027, W083, W094 Cassin, Andrew M. P1184 Castañeda, Nadia Vieira P0489 Castell-Miller, Claudia W099 Castelló, Anna W824 Castiglione, Stefano W634 Castric, Vincent P0796 Castro, Ariel P1174 Castro, Daniel Bedo Assumpção P0929,

W161 Catalan, Pilar P1023 Cattivelli, Luigi P0587, W888 Cattonaro, Federica P0587, P0591,

W179, W308 Cauet, Stephane P0070 Cavagnaro, Pablo P1077 Cavallini, Juliana da Silva P0931 Cavanagh, Colin W681 Cave, Vanessa W020 Ceccarelli, Salvatore P0621, W177 Cellon, Catherine P0925 Cenci, Alberto W070 Centritto, Mauro W308 Cepela, Jason P0843 Cericola, Fabio P0659, P1050, P1054,

P1135, W427, W433 Cerutti, Mario W179 Cervantes-Pérez, Sergio Alan P0216

309

Cervera, Maria Teresa P0982 Cha, Seong W W206 Chabbert, Brigitte P1042, W293 Chadha-Mohanty, Prabhjit P0505 Chae, Won Byoung P0826 Chaffin, Shawn W538 Chagne, David P0972 Chaidir, Nadia I. P0950 Chakrabarti, Manohar P0197 Chalhoub, Boulos P0818, W104, W280,

W604 Chaluvadi, Srini W746 Chamberlin, Mark A. W192 Chambers, Alan P0214, W323, W359 Chamrad, Ivo P0191 Chan, Agnes P W315 Chan, Agnes P. P0003 Chan, Crystal W209 Chan, Patricia P. P0391 Chan, Saki P0042, P0319 Chandra, Ambika W299 Chandra, Aneal P1129 Chang, Chia-Hui P0862 Chang, Dan P0324 Chang, Peter W209, W394 Chang, Peter L P0780 Chang, Shuang W643 Chang, Wei W871 Chantreau, Maxime P1042, W293 Chao, Shiaoman P0589, P0607, P0629,

P0634, P0637, P0644, P0651, P0665, W032, W365, W393, W538, W879

Chapinal, Núria P0298 Chapman, Antony V. E. P0192, W607 Chapman, Jarrod W029, W713 Chapman, Kent W086 Chapman, Mark A. W308 Chapple, Richard W147 Charron, Carine W714 Chaturvedi, Samridhi P0441 Chaturvedi, Sushil P0783, W009 Chaudhary, Manil P1129 Chaudhuri, Arkaprava W796 Chauhan, Raj D. P0093 Chaves, Amalia S. P0290 Chekhovskiy, Konstantin P1048 Chellapilla, Bharadwaj W778 Chemayek, Bosco P0639 Chen, Ai-Lin P0862 Chen, Ailu P0240, W039 Chen, Changbin P0533, P0534 Chen, Charles P0782 Chen, Charles Y. P0098 Chen, Chengxuan P0702 Chen, Chien-Hua P0862 Chen, Chuanchuan P0221 Chen, Chunxian P0099, W162 Chen, Cynthia P0069 Chen, Dongqin W700 Chen, Fadi W548 Chen, Feng P1009 Chen, Guoxiong P0671, W880 Chen, Hua P0601 Chen, Jay P0217

Chen, Jiafa P0514 Chen, Jianli P0634 Chen, Jianqing P0911 Chen, Jinbo P1155 Chen, Jinfeng P0936 Chen, Junfeng P0308 Chen, Kaiyi P0862 Chen, Lei P0135, P0172 Chen, Min W845 Chen, Ning W796 Chen, Pinghua P0098 Chen, Qijiao P1027 Chen, Riyan P1023 Chen, Ru-Kai P0098 Chen, Shiyuan P0694, P0696 Chen, Songbiao W606 Chen, Sumei W548 Chen, Weidong P0457, W207 Chen, Wenbo P0440 Chen, Xianming P0637, W393 Chen, Xinlu P1009 Chen, Xiuhua P0010, W814 Chen, Xuemei G004 Chen, Zhiliang W635 Chen, Zhongxu P0228 Cheng, Chia-Yi C23, P0790, P0792, W059, W410, W876

Cheng, Chun-Huai C03, C13, C14, P0888, P0953, P1153, W162, W571, W872, W874

Cheng, Chunyan P0936 Cheng, Feng P0814 Cheng, Hans P0417, W534, W644,

W669 Cheng, Jianlin W128 Cheng, Lailiang P0895 Cheng, Peng P0744, W208 Cheng, Shifeng P1085 Cheng, Zhihao W587, W688 Cherney, Jerome W567 Cherng, Shin-jiun P0941 Cheung, Matthew P1145, P1171 Chevre, Anne-Marie W796 Chhalliyil, Pradheep P0045, P0061 Chhatre, Vikram W257 Chhetri, Mumta P0639 Chibanguza, Kundai P0886 Childers, Christopher P1118, W875 Childs, Kevin L. P1168, W184 Chilvers, Martin W286 Chin, Jason P0097, W089, W180 Chin, Joong Hyoun P0489 Chinnaraja, C. W815 Chino, Fumika P1063 Chiorato, Alisson Fernando P0758 Chitikineni, Annapurna P0781, P0788,

P0789 Chitikineni, Anu P0206, P0783, W009 Chitnis, Parag W153 Chitnis, Vijaya R. P0227 Chiulele, Rogerio W766 Cho, Seoae P0325, P0357, P0365 Cho, Yoo-Hyun P0484 Cho, Young B. P0715

Choe, Junkyoung P0164 Choi, Beom-Soon P1081 Choi, Bu-Woong P0484 Choi, Cheol P0896 Choi, Doil P0132, P0863, P0865, P0866 Choi, Dong-Woog P0220, P1087 Choi, Hong-Il P1081 Choi, Igseo P0225, P0372, W828 Choi, Kimyung P0353 Choi, Nu Ri P0353 Choi, San P0220 Choi, Sang-Ho P0450 Choi, So-Young P0403 Choi, Sun Hee P0496 Choi, SuRyun W102 Choi, Woo Lee P0196 Choi, Yang Do P0153, P0812 Choisne, Nathalie W421 Chopra, Ratan P0738 Choudhary, Bibha P1046, P1047, P1072,

W806 Chougule, Kapeel W483 Choulet, Frederic C17, P0597, P0654,

W031, W473, W478, W691 Chowdhary, Bhanu P P0322, P0333 Christe, Camille W320 Christian, Ryan W. P0899 Christin, P. a. P0179, W426 Christopoulou, Marilena P1011, W196,

W380 Chuah, Aaron P1023 Chugh, Vishal P0622 Chung, Sung Jin P0092, P0219 Ciacciulli, Angelo P0916 Cianzio, Silvia P0731 Cicak, Toby P1096 Cintra, Leandro C. P0231, P0289 Ciobanu, Daniel W829 Ciobanu, Daniel C. P0367, P0374 Ciotola, Francesca W110 Cirera, Susanna W824 Cisse, Ndiaga P0784, W766, W767 Claessens, Annie W296 Clark, Dale P0613 Clark, Dominic W376 Clark, Jo W313 Clark, Lindsay V. P0026, W563 Clark, Matt P0144, P1114 Clark, Matthew D. P0887 Clark, Randy W002 Clark, Richard M. P0145 Clark, Tyson A. P0049, P0073, W360 Clarke, Carling P0580 Clarke, Fran R. P0588, P0593, P0617,

P0620 Clarke, John M. P0593, P0617 Clarke, Kasia P0652 Clarke, Laura P1114 Clarke, Shannon W020, W146, W390, W458

Clarkson, Cara P0378 Clasen, Benjamin W600 Claude, Andrew P0343 Clavijo, Bernardo P0072, W313

310

Clavijo, Jose Alejandro P0752, W221 Cleary, Alan C11, P0693, P0697 Clegg, Michael T. P0669 Clement, Didier P0997, W120 Clément, Gilles P0535, W262 Clemente, Thomas E P0705, W084,

W755 Clemente, Tom W623 Clements, Dave W354 Clemons, Kimberly P0956 Cleveland, Beth P0250 Cleveland, Matthew W533 Clifton, Kari P0113 Clifton-Brown, John C. P0028 Cline, Hollis P0448 Clop, Alex P0376, W824 Close, Timothy J. P0204, P0658, P0784,

P0785, P0786, W489, W766, W767 Clouse, Jared P1044 Cloutier, Sylvie P0160, P1039, P1043,

W291, W294 Clowers, Katie J P1035 Coble, Derrick J. W028 Cockett, Noelle P0382, W139, W453 Cockrum, Rebecca P0169, P0310 Cockrum, Rebecca R. P0380 Coe, Michael W335 Coelho, Susana M W716 Cofre, Teresa D C G P0931 Cogan, Noel O. I. P0107, W297 Coggeshall, Mark P0969, W304, W312,

W878 Cohen, David W308 Cohn, Marc A. P0488 Colasuonno, Pasqualina P0578 Colazo, Marcos G. P0165 Colbert, Raphael P0752, W221 Cole, John B. P0273, P0277, W141,

W150, W155 Coleman, Craig E. P0455 Coleman, Stephen P0334 Coletta, Angelo W110 Colgan, Don J. W635 Collard, Bertrand P0489 Colle, Marivi P0937 Colli, Licia W109 Collier, Chad P0059, P0107 Collier, Ray P0025, W566 Collin, Myriam W552 Collins, A. Grace P0020 Collins, Cassandra P0877 Colmsee, Christian P1155 Colombi, Cinzia P0916 Comai, Luca W588, W622, W717, W742 Comstock, Jack P0009, W811 Conant, Gavin P0378, P0380, W632 Conesa, Ana C26, W092, W794 Conev, Rumen P0890 Conklin, Phillip Adam W740 Conner, Anthony J P0776 Consuegra, Sofia P0233, W041 Contreras- Castillo, Carmen J. P0301 Contrino, Sergio C23, P0790, P0792,

W059

Cook, Devin P0173 Cook, Douglas R P0780, W209 Cook, Douglas R. W394 Cook, Frank P0339 Cook, Mark W304, W878 Cook, Meridith P0082 Cooksey, Amanda M. W646 Coombs, Joseph P0842 Cooper, Alan P0475 Cooper, Elizabeth A. P0552 Cooper, Laurel P1123, W487, W612,

W613, W842 Cooperstone, Jessica P0851, P0857 Copetti, Dario W860 Coram, Tristan W624 Coriton, Olivier W796 Cormican, Paul W434 Cormier, Fabien W684 Cornelius, John A. P0448 Corol, Delia W808 Corrado, Giandomenico P0853 Correa Molinari, Hugo B. P0203 Corredig, Milena P0283 Correll, Melanie P0752, W221 Coruzzi, Gloria W058 Corvelo, André P0390, P0746 Cosenza, Gianfranco W108, W109 Costa, Estela A. W821 Costa, Fabrizio P0892, P0893, P0902,

P0903, W329 Costa, Guglielmo P0892, P0893, P0902,

P0903, W329 Costa, Juliana M. P0177 Costa, Katrina W375 Costich, Denise W567 Costin, Alexandra Silvia P0386 Cote, Linda P0873 Cottingham, Robert W. P1138 Cottman, MariEllen P1165 Cotucheau, Julien P0869 Couderc, Loic C17, P0654, W478 Couger, M. Brian W672 Couldrey, Christine W020 Couloux, Arnaud P0597, W473 Courtial, Audrey P0070 Courtright, Amanda P0448 Cousins, Peter P0873 Coutinho, Luiz Lehmann P0290, P0418 Couturon, Emmanuel W180, W181 Coville, Jean Luc P0392 Covington, Michael P0817 Covington, Michael F. W103 Cowling, Wallace A. W796 Cox, Timothy P0385 Coyne, Clare P0763, W208 Coyne, Clarice J. P0744, W209, W210 Cozzi, Maria C. P0287, P0288 Cozzuto, Luca P0746, P0750 Crabb, James L. P0858 Cram, Dustin J P0626 Cramer, Grant R. W675 Crampton, Mollee C P0756 Craven, Maryke P0541

Cregan, Perry P0101, P0699, P0708, P0730

Crepeau, Marc P0988, W332, W568, W569

Crisovan, Emily P0842, W567 Crist, Debbie P0793 Cristancho, Marco A. W178 Cristofani-Yaly, Mariangela P0929, W161 Cronk, Quentin C. B. W320 Cronn, Richard P0065, P0764, P0968 Crooijmans, Richard W535 Crooijmans, Richard P.M.A. P0350 Crooker, Brian A. W150 Cros, David W554 Crosby, Robert W264 Crossa, José P0532, W389, W774 Crouzillat, Dominique W180, W181 Crowhurst, Ross N P0972, W331 Crozier, Jane W114 Cruickshank, Jenifer P0314 Cruz, Cosme Damião P0085 Cruz, Daniel F. C24 Cruz, Fernando P0390 Cruz, Libertado W109 Cruz-Hernandez, Pedro P0259 Cseh, András P0586 Cseke, Leland J. W176 Cuacos, Maria P0795 Cuesta-Marcos, Alfonso P0664, P0673 Cuevas, Jaime W389 Cui, Yuehua P0842 Cullis, Christopher P1038, W292 Cumbie, William Patrick P0986 Cunnick, Joan W832 Cunningham, Hannah C. P0378 Cunningham, Michael P0986 Curiel, Luis W474 Curik, Ino P0443 Curry, Caitlin J. P1022 Curry, J D P0385 Curtolo, Maiara P0929, W161 Curuk, Pembe P1031 Cushman, John C. P0150, P0155,

P0218, P1066, W347 Cuthbert, Richard D. P0588, P0620 Cwiek, Hanna W504 Czaban, Adrian P1050, P1054, W427, W432, W433

Czarnecki, Olaf P0217 Czypionka, Till P0447 D'Hont, Angélique W714 D'hont, Angélique W074 Da, Yang P0273, P1176, W150 da Costa, Ricardo W076 Dacosta-Calheiros, Emmanuel W394 Daetwyler, Hans D. P0639, W297 Dai, Lu P0702 Dai, Xinbin C16, C20, P0688, P0794 Dai, Xiongtao W460 Dalen, Love W238 Daley, Maureen W566 Dall'Olio, Stefania P0344, W823 Dalloul, Rami A. P0405

311

Dalrymple, Brian P0381, W135, W139, W453

Dalsing, Brad P0538 Dalton-Morgan, Jessica W796 Damodaran, Suresh P0718, P0719,

W626 Danchin, Coralie P0304 Dandekar, Abhaya W188, W332 Danowitz, Ann W860 Dantas, Simone P1019 Dapprich, Johannes P0733 Darby, Alistair C. P0433, P1069 Dardick, Christopher W326 Darracq, Aude W809 Darre, Thibaud W181 Darrier, Benoît W691 Das, Pranab J P0322, P0333 Das, Roma R. P0742, W763, W778 Dash, Sudhansu C11, P0695, P0697,

P0699, P0735, P0737 Da Silva, Jorge A. P0550, W812 da Silva, Luiz Otavio Campos P0289 da Silva, Naiara Milagres Augusto P0231 da Silva, Poly Hannah P1019 Da Silva-Linge, Cassia P0916 Datema, Erwin P0940, P1189 Datla, Raju W035 Datson, Paul W013 Datta, Swapan K P0783, W009, W212 Daum, Chris W567 Davassi, Alessandro P0553 Davey, Chris P0028 Davidson, Bob W818, W819 Davidson, William S. P0235 Davies, Kevin P0972 Dávila, Guillermo Fuentes P0594 Davis, Brian W. W133 Davis, Charles C P1086 Davis, Emily P0374 Davis, Richard V.N. P0121, P1150 Davis, Theodore B P0050 Davitt, Jack P0969, W304, W312, W878 Davy, Marcus W013, W331 Dawe, R. Kelly W581 Dawson, Andrew M. P0676 Dawson, Eric P1113 Dawson, William P0434 De-la-Hoz, Juan Fernando C24 Deal, Karin R. P0574, P0577, W460,

W474 Deal, Roger B. W356 Dean, Deborah P0881, W547 Dean, Lisa W392 DeBarry, Jeremy W485 De Bei, Roberta P0877 Debener, Thomas W551 De Beukelaer, Herman P1173, W383 Debladis, Emilie W552 de Both, Michiel P0940 de Both, Michiel TJ W122 Dechow, Chad P0276, W136 Decker, Jared P0275 Decker, Jared E. P0280, P0290, P0302,

P0326, W154, W252

DeClerck, Genevieve P0490 Decorps, Christophe P0869 Dedemo, Gisele Cristina P0184 Defilippi, Bruno P0874 De Gernier, Hugues W266 DeGironimo, Lisa P1086 De Guzman, Christian P0506 Dehesh, Katayoon W085 Dehgani, Hamid P0502 DeIulio, Gregory A. W097 De Jesus, Susana P0857 de Jesus Santos, Marcelo W116, W118 De Jong, Darlene M. P0859 De Jong, Gerben P0286 de Jong, Hans P0827, P0871 deJong, Pieter J. P0988, W568, W569 Dekkers, Jack C.M. P0225, W770,

W828, W832 de Kochko, Alexandre P0948, W180,

W181, W182 Delany, Mary W645 De La Salle, Tignegre Jean-Baptiste

P0784, W767 Delauriere, Laurence P0066 Delaye, Luis P0746, P0750 de Leon, Natalia W184 DeLeon, Teresa P0488 Delgado, Juan V W442 Delgado, Melissa Kaye P0413 Delgado-Salinas, Alfonso P0746, P0750 Della Rocca, Gianni W308 Delledonne, Massimo P0587, P0753,

P0893, P0902 de los Campos, Gustavo W389 Del Terra, Lorenzo W179 DeLuca, Thomas H. P0981, W263 Del Valle Echevarria, Angel W545 Demars, Julie W151 deMena, Janet P0401 Démene, M.N. W324 De Meyer, Geert P1173, W383 Demorest, Zachary W600 Dempewolf, Hannes W395 Deng, Cecilia H. P0972, W013 Deng, Ying P0935 Deng, Zhanao P0924, P0927, P1058, W550

Denis, Marie W554 Denny, Roxanne P0771 Denoyes, Béatrice P0920, W324 Denver, Colin A. P0107 dePamphilis, Claude P1078, W618 DePauw, Ron M. P0588, P0620 De Pessemier, Jérôme W266 Der, Josh P1085 Der, Joshua P. P1078, P1082, P1086,

W618 Dereeper, Alexis P0944, P1111 Derevnina, Lida P0460, P0472, P1013, W436

Dermawan, Hugo W813 Derr, James N. P1022 Der Sarkissian, Clio P0324 Descombes, Patrick W180

Deshmukh, Rupesh W706 Deshpande, Panchajanya W088 Deshpande, Santosh P0557, P0558,

P0562, P0566, P0567 Deshpande, Shweta W567 Desiderio, Francesca P0575, P0587 De Silva, Nihal W013 Desmae, Haile P0208 Dessie, Tadelle P0295 De Storme, Nico P0090, W191 Detering, Frank P1129 Dettori, Maria Teresa W326 Devani, Ravi S. W718 Dever, Louise P1069 DeVetter, Lisa C13, P0888 Devisetty, Upendra Kumar P0817, W103, W482

De Vita, Pasquale P0585 Devitt, Nicolas P0767 Devkota, Ravindra P0625, P0634 Devos, Katrien M. P0576, W460, W746 Dewar, Ken P1183 Dey, Shatovisha P0414 Deyholos, Michael P1039, P1043,

P1086, W290, W291 Deys, Kathleen W422 Dhakal, Smit P0625 Dhaliwal, H.S. P0622 Dhanapal, Arun Prabhu P0716 Dhandapani, Vignesh W102 Dharmaraj, PS P0788, W212 Dhekney, Sananand A P0881 Dhillon, Braham W351 Dhillon, Narinder P0941 Dhingra, Amit P0146, P0858, P0899,

P0912, W467 Dhorne-Pollet, Sophie P0171 Dhugga, Kanwarpal P0015 Di-Palma, Federica P1114 Dias, Cristiano Villela W115 Dias, Elaine S. P0948, W182 Diaz, Federico P1040 Díaz, Francisca P. P1029 Diaz, Rodrigo W640 Diaz-Sala, Carmen P0982 Dickerson, Julie P0737, W607 Dickey, Alexia P1098 DiCuccio, Michael C04, P1142 Didion, Thomas W433 Diesh, Colin C02, P0432, P1154, W411 Diesh, Colin M. P0267, P0268, P1117 DiFazio, Stephen P0003, W008, W315, W720

Di Gaspero, Gabriele W186 Digel, Benedikt W888 Di Guardo, Mario W329 Dijkhuizen, Laura P1084 Dilda, Francesca P0313 Dilkes, Brian P. W588 Dilla-Ermita, Christine Jade P0489 Dillman, Adler P1020 Dimalanta, Eileen T P0043, P0050 Dinesh-Kumar, S.P. W674 Ding, Shou-Wei W733

312

Ding, Yiliang P0836, W792 Dinkins, Randy P0193, P0197 Dinneny, Jose P1016 Diop, Ndeye Ndack W761 Dirlewanger, Elisabeth W334 Distelfeld, Assaf P0572, P0575 Divers, Thomas J P0338 Dlugosz, Elizabeth M. P0021, P1091 Do, Duy N. P0352 Dobbels, Austin A. P0701 Doblin, Monika S. P1184 Dobon-Alonso, Albor W603 Doddamani, Dadakhalandar P0211,

P0778, P0783, W009, W763 Dodds, Ken W146, W390 Doebley, John P0520 Dogramaci, Munevver P0157 Doherty, Colleen J W101 Dohm, Juliane C. P0746 Dohse, Cassandra Anne P0681, W539 Doi, Koji P1148 Dolezal, Marlies A. P0285, P0287 Dolezel, Jaroslav P0086, P0191, P0195,

P0582, P0586, P0587, P0589, P0590, P0591, P0658, W014, W210, W460, W471, W886

Domingues, Douglas S. P0213, W180 Dondini, Luca W326 Dong, Jiangli P0131 Dong, Taoran W746 Dong, Xiangshu P0831 Donmez, Dicle P1101 Donnini, Domizia P1037 Donnison, Iain P0028 Donofrio, Nicole P0757 Donoso, José M. P0915 Doohan, Fiona P1090, W463 Dooley, Rion C23, P0790, P0792, W059 Dopazo, Joaquin W164 Doré, Joël P0363 Dorlhac de Borne, François P0869 Dorn, Kevin M. P0835 Dornbusch, Tino P0054 Doron-Faigenboim, Adi W227 Dorrestein, Pieter W678 dos Santos Fernandes, Luciel W116 Dossett, Michael P0923 Doty, Sharon L. P0981, W263 Doucet, Aurelien J. W131 Douches, David P0842, P0843, W248,

W738 Dougherty, Laura P0895 Douglas, Carl W320 Douglas, Gavin W894 Doulis, Andreas P0845 Douthe, Cyril W308 Dowd, Patrick F. P0027 Dowling, Charlie P0019 Doyle, Jeffrey J. P0699 Dozzi Tezza, Renata Izabel P0184,

P0931 DP, Biradar P0954 Drabo, Issa P0784, W766, W767 Drake, James P0097, W089

Drayton, Michelle P0107 Dreisigacker, Susanne W774 Drew, Robert P0255 Drewe, Philipp P0145 Dreyer, Léanne L. P0065 Dridi, Sami P0173, W671 Driscoll, Carlos A. W127 Droc, Gaëtan P0944, W714 Drouilhet, Laurence W151 Droz, Jean-Marie P0179 Drummond, Marcela Gonçalves W109 Du, Chunguang W867 Du, Dongliang P0924, P0926 Du, Xiaoyun P0926 Du, Yu-su W703 Duan, Weike P0815 Dubcovsky, Jorge C18, P0575, P0637,

P1027, W032, W033, W183, W393, W462, W603, W879

Dubreuil, Pierre C15, P1128 Dubrovsky, Joseph G. P0034, P0222 Dufayard, Jean-François P0944 Dugan, Shannon W068 Dugas, Diana V. P0764, P0775 Duguid, Scott P1039, P1043, W291,

W294 Duijvesteijn, Naomi W157 Duitama Castellanos, Jorge A. C24 Duke, Sara W010 Dukowic-Schulze, Stefanie P0533, P0534

Duncombe, Jillian L P0300 Dunham, Rex P0245 Dunislawska, Aleksandra P0428 Dunn, Nathan A C02, P0432, P1154,

W411 Dunnell, Kelsey L. P0978 Dupanloup, Isabelle P0324 Dupont, Christopher L. P0930 Duran, Chris P1145, P1171 Durand, Céline P0597, W473 Durand, Eleonore P0796 Durand, Sophie W421 Durand-Gasselin, Tristan W557 Durward-Akhurst, Sian Ann P0317 Dvorak, Jan P0577, W188, W460, W474 Dweikat, Ismail P0556 Dwiyanti, Maria S. P0489 Dyck, Jim P0682, W536 Dyer, John W086 Dzahini-Obiatey, Henry W112 Dzakula, Zeljko J. P1186 Dzama, Kennedy P0292, P0293 Dzierzon, Helge P0972 Dziuba, Piotr P0303 Dzomba, Edgar F. P0384, W443 D’Hont, Angélique W552 Eaglen, Sophie P0286 Ebata, Toshinobu P0492 Eber, Frederique W796 Eberth, John Edmund P0339 Ebitani, Takeshi P0495 Ebrahimzadeh, Hassan P0115 Echeverria, Dimas P0755

Echeverry-solarte, Morgan P0615 Eckalbar, Walter L. P0116, P0445 Ecker, Joseph W358 Eckert, Andrew J. W572 Eddy, Alison P0343 Edger, Patrick W101, W632 Edriss, Vahid P0659, P1055 Eduardo, Iban P0915 Edwards, David P0469, P0590, P0778,

P0782, P0824, W014, W471, W604, W763

Eeuwijk, Fred E. van P0001, W308, W316

Ehrenmann, François W795 Einhorn, Todd P0146 Eisley, Chris P0225 Eizenga, Georgia C. P0490, W010 El-Hout, Nael P0009 El Baidouri, Moaine W628 Elbeltagy, Ahmed R. W026 Eldridge, Mark D.B. W635 Eliades-Becker, Stacie H. P0111 Elias, Sabrina Moriom P0508 Ellis, Danielle P1060 Ellis, Shona P1086 Ellison, Amy P0233, W041 Ellison, Melinda J. P0378, P0380 Ellison, Shelby P1077, W219 Ellison, Shelby L. W222, W250 Elsadr, Hanny P0913, W328 Elsen, Jean-Michel P0423 Elser, Justin L. P0872 Elshafei, Adel A. P0627 Elsik, Christine G. C02, P0267, P0268,

P0432, P1117, P1154, W411 Emediato, Flavia L. P0945 Emiliani, Giovanni P0001, W316 Ence, Daniel D. W524 Endelman, Jeffrey P0840, P0841, W738 Endo, Takashi R. P0671, W880 Engineer, Cawas P0806 Engle, Taylor P0374 English, Adam C. W139, W453, W861 Engstrom, Kayla P0533 Enk, Jake W236, W238 Enns, Richard M. P0169, P0310, W142 Epperson, William P0167 Epstein, Lynn W603 Erb, Ionas P0746, P0750 Erice, Gorka P0517, P0538 Erickson, Galen P0016 Ermini, Luca P0324 Ernst, Catherine W. W831 Ernst, Cathy P0225, W643 Esch, Maria P1155 Eshel, Orly W044 Eskipehlivan, Senem W088 Eskridge, Kent P0556 Esquerré, Diane P0392 Estellé, Jordi P0363 Estill, Katy P0415 Ethe-Sayers, Scott W088 Eudes, François P0635 Eujayl, Imad W807

313

Eulgem, Thomas P0140 Eun, Chang-Ho P0928 Evans, Dyfed P0162, P1007 Evans, Jay D. P1118 Evans, Joseph W567 Evans, Katherine M. C13, P0888, P0894 Evans, Luke W008, W720 Eveland, Andrea L. W404, W498 Evenhuis, Jason P. P0254 Eversole, Kellye P0571, W172, W284 Evrard, Aurelie W031 Ewers, Brent E. W101 Ewing, Aren M. P1014 Excoffier, Laurent P0324 Eyzaguirre, Raul P1040 Ezura, Hiroshi P0850, P0860 FAANG Consortium, The P1114 Fabre, Stéphane W151 Fack, Veerle P1173, W383 Fahima, Tzion P0575, P0611, P0636, P1027, W473, W603

Fahlgren, Noah P0686, W096 Fahrenkrog, Annette M. P0979 Fahrenkrug, Scott C. W150 Fait, Aaron P0855, W340, W844 Faivre Rampant, Patricia P0001, W316,

W795 Fajardo, Diego A. P0770 Fakhoury, Ahmad M. P0456 Falcão, Alexandre W002 Falchi, Rachele W326 Falcon, Celeste Marie W220 Falk, Robert C04, P1142 Falque, Matthieu P0849, W689 Famula, Randi P0987, W332 Fan, Bin P0362, P0375, P1158 Fan, Xing W633 Fanelli, Flaminia P0344, W823 Fang, David D. P0955, P0960, P0962 Fang, Xiaodong P0274 Fang, Yongxiang P1069 Fang, Zhou P0669 Fantini, Oscar P0304 Faraut, Thomas P0392 Faria, Karina de Cassia P1021 Farina, Anna W019, W540 Faris, Justin D. P0575, P0641, P0651,

W365 Farmer, Andrew D. C11, P0690, P0693,

P0697, P0735, P0737, P0767, P0768, P0771, W223

Farneti, Brian P0892, P0893, P0902, P0903, W329

Farrar, Kerrie P0028 Farré Belmonte, Marta P0274 Farrell, Jacqueline D. P0695, P0699 Farrelly, Marc P0111 Fatokun, Christian P0784, W767 Fauve, Julie W230 Fay, Justin P1004, W249 Fazio, Gennaro P0875, P0898 Fazio, Gia W085 Fè, Dario P1050, P1054, W427, W433 Feau, Nicolas W351

Federizzi, Luiz P0682, W536 Fedorowicz-Stronska, Olga P0188 Feed Efficiency Consortium W140 Feeley, Kevin H. P0695, P0735 Fei, Shui-zhang P0131 Fei, Zhangjun P0440, P0909, W225, W226, W227, W229

Feldman, Max J P0518, P0569 Fellers, John P0189, W352 Felton, Gary W287 Feng, Chao P0094 Feng, Jiuhuan W595 Feng, Kai P0217 Feng, Lihua P1027 Feng, Xiaoxiao P0221 Fennell, Anne P0873, W675 Fenwick, Paul P0602, W465 Ferchaud, Stephane P0361 Ferguson, Armenia A. W870 Ferguson, Erin P0033, P0035 Ferguson, Morag P1071, W126 Ferlanti, Erik C23, P0790, P0792, W059,

W410, W876 Fernandes, José R.A. P0089 Fernandez, Gina P0923 Fernandez-Pozo, Noe P0129 Fernandez Gomez, Jose P0616 Fernandez i Marti, Angel P0914, P0917,

W196 Fernando Garcia, Jose P0271, P0301,

W108, W141, W155, W387 Fernie, Alisdair R. P0753, P0855 Ferragonio, Pina P0585 Ferrandi, Chiara W111 Ferrarini, Alberto P0753 Ferrasa, Adriano P0931 Ferre, Fabrizio W106 Ferreira, Savio S. P0011, P0549 Ferreira de Carvalho, Julie W015 Ferrie, Alison M.R. P0581 Ferro, Jesus Aparecido P0184, P0931 Ferro, Maria Ines T. P0184, P0931 Feuillet, Catherine W172, W473, W691 Feye, Kristina W832 Ficco, Donatella Bianca Maria P0585 Ficklin, Stephen P. C03, C13, C14,

P0888, P0953, P1153, W162, W571, W872, W873, W874

Figeac, Martin P0796 Figueira, Antonio P0551 Figueroa, Melania W099 Filho, Jaire A. F. P0007, P0008, W553 Filichkin, Sergei W099 Filipecki, Marcin P0864 Filiz, Ertugrul P1005 Filkov, Vladimir W306, W307 Finkers, Richard P1061 Finn, Chad P0923, W335 Finno, Carrie J. P0317, P0327, P0330, P0337, W272

Fiore, Alessia W019, W180 Fiorito, Graziano P0073, W360 Firmino, Ana P0458 Fischer, Jeremy C27

Fisher, Ann P0873 Fisk, Scott P0673 Fister, Andrew W117 Fitzpatrick, Matthew W257 Fitzsimmons, Carolyn P0165 Flachowsky, Henryk P0897, P0900,

P1104 Fleck, Neil D. P0981, W263 Fleming, Allison P0283 Fleury, Delphine W884 Flexas, Jaume W308 Flicek, Paul P1002, P1114 Flinn, Paul P0181 Flook, Josh P0523 Florea, Liliana P1164 Flores, Raphael C15, P1128, W421,

W478, W504 Flury, Christine P0281 Fobert, Pierre P0635 Fobis-Loisy, Isabelle P0796 Fodor, Agota P0880 Foerster, Hartmut P0129 Fofana, Bourlaye P0160 Fogarty, Melissa C. P0681, W539 Foissac, Sylvain P0392, W445, W535 Foley, Michael E. P0157 Folta, Kevin M. P0214, W323, W359 Fontanesi, Luca P0287, P0344, P0355, P0443, W823

Font i Forcada, Carolina P0914, W196 Ford, Stephen P. P0170 Foresman, Bradley W538 Formey, Damien W493 Formighieri, Eduardo Fernandes P0007, P0008, W553

Forrest, Kerrie P0639, P0641 Forseille, Li P0635 Forster, John W297 Forsythe, Evan S W486 Fortes, Marina R. S. W149 Foschi, Stefano P0916 Foster, Cliff E. P0027 Foucal, Adrian P0324 Foulkes, John P0057, W709 Fountain, Tara W252 Fourment, Joelle P0070 Fowler, Ben P0257 Fowler, D. Brian P0128 Fox, Tim W192 Francia, Enrico P0587, P0674 Francis, David M. P0851, P0857 Francis, Tammy P0635 Francisco, Perigio B P0505 Francisco-Ortega, Javier W558 Franckowiak, Jerome P0678 Franco, Jorge P0514, P0596 Franco Garcia, Antônio Augusto P0758 Franje, Neil W777 Franklin, Chris P0795 Frascaroli, Elisabetta P0604 Frazier, Taylor P. P0022, P0212 Frechette, Cameo P0480 Fredholm, Merete W824 Freeling, Michael R W629, W630, W632

314

Freetly, Harvey C. W288 Frelichowski, James P0964, W016,

W685, W848 Frels, Katherine P0603, P0605 Frenkel, Zeev M. P0587, P0589, P1194,

W473, W475 Fresnedo Ramirez, Jonathan P0873,

P0887, W419 Frias, Leonor P0390 Fricano, Agostino P0587 Frick, Michele P0467 Friedemann, Peter D. P0523 Friesen, Ken P0181 Friesen, Timothy L. P0474, P0650,

P0651, P0675, P0679, W365 Frigo, Erika P0287, P0288 Fritschi, Felix B P0716 Fritz, Allan K. P0599, P1095 Fritz, Sébastien P0379 Fritz-Waters, Eric P0225, P0269, P1113,

P1157, W025, W108 Froenicke, Lutz P0460, P1062, W196,

W436, W866 Froman, David P. P0404, W659 Fu, Daolin W603 Fu, Fengli P0717, P1004, W403 Fu, Haihui P0182 Fu, Weixuan P0424, W652 Fu, Yong-Bi P1039, W291 Fuentealba, Maria P0625, P0634 Fuentes-Utrilla, Pablo W135 Fuerst, Greg P0192, W607 Fuganti-Pagliarini, Renata P0203 Fujii, Kenichiro P0712, P0713 Fujisawa, Takatomo C30, P1131 Fujita, Kenji P0495 Fujita, Masahiro P0492 Fujita, Pauline W892 Fujiyama, Asao C30, P0492, P1089,

P1131, W527 Fukuda, Naoya P0850 Fukumoto, Shoma P0860 Fukuoka, Hiroyuki P0847 Fukuoka, Shuichi P0496 Fumagalli, Matteo P0323, P0324 Fung, Pauline P0773 Funkhouser, Scott A. W831 Funston, Rick P0296 Furtado, Agnelo P0486 Furtado, Edson P0458 Furtado dos Santos, Rodrigo P0095,

P0985 Furuki, Eiko P0652 Gaasterland, Terry P1159 Gabaldon, Toni P0746, P0750 Gabler, Nicholas K. W025 Gadaleta, Agata P0578, P0585, P0587 Gadau, Jürgen W524 Gadoury, David P0873 Gai, Junyi P0724 Gaiarsa, Jonas W. W819 Gaiero, Paola P0871 Gaikwad, Kishore P0933 Gaikwad, Priyanka S. P0557

Gailing, Oliver P0969, W312, W878 Gaitan, Alvaro W178 Gaju, Reshmi P0057, W709 Galantino-Homer, Hannah L. P0331 Galbusera, Peter W109 Galimberti, Giuliano P0344, P0355,

W823 Galindo, Leonardo W290 Galla, Giulio W193 Gallagher, Joseph P. W213, W631 Gallardo, Rodrigo W770 Galliart, Matthew P0134, P1030, W639 Gallina, Sophie P0796 Gallo, Maria P0740 Gallo, Maurizio P0355 Galpaz, Navot W227 Ganal, Martin W. P0047, P0606 Ganatra, Mehul P0050 Gandolfi, Barbara W127, W128 Ganji, Satish P0465 Ganote, Carrie L. C27, P0075 Gao, Caixia W598 Gao, Dongying W866 Gao, Feng P0227 Gao, Guangtu P0244, P0247, P0252 Gao, Jian W588 Gao, Lei W190 Gao, Lingling W491 Gao, Peng P0635 Gao, Yongming W777 Gao, Zhi P0525, W585 Garbe, John P1176 Garbe, John R. W150 Garcia, A.P. P0426 García, Adriana P0282, P0294 Garcia, Antonio Augusto F. W002 Garcia, Gonzalo P0072 Garcia, Jose Fernando W109 García, José Luís P0746 Garcia, Nathan P0533 Garcia-Giron, Carlos P1002 Garcia-Mas, Jordi P0746 Gardiner, Jack C10, P0516, P1123,

W487, W613 Gardiner, Laura P0479, W268 Garg, Gagan W491 Garg, Neha W678 Garg, Vanika P0211, P0781, P0788 Garner, Austin G. P0949 Garner, John P1109 Garnett, Trevor W339 Garnett, Trevor Paul W336 Garnica, Diana W518 Garreau, Hervé P0443 Garrett, Karen W639 Garrick, Dorian J. P0281, P0297, W145 Garry, Frank P0310 Garsmeur, Olivier W552, W714 Garvin, David F. P0133, W099 Garvin, Tyler P0097 Gas-Pascual, Elisabet P0851, P0857 Gasic, Ksenija C13, P0888, W335 Gasparyan, Boris P0475 Gassmann, Marcus P1182

Gast, Fernando W178 Gaston, Amèlia W324 Gattolin, Stefano P0916 Gaude, Thierry P0796 Gaudet, Denis P0467 Gauger, Phillip C W832 Gaur, Pooran M P0206, P0209, P0781,

P0782, P0783, W009, W778 Gautier, Nadine P0070 Gavryliuk, Olesia P0797 Gawronski, Piotr P0148 Gazaffi, Rodrigo W002 Ge, Song W703 Gebauer, Marlene W330 Gehan, Jackson P0139 Gehan, Malia P0686, W096, W101 Geib, Scott P0431 Gélinas, Nancy P0970 Gelpi Buchaca, Josep Lluis C17, P0654 Gelvin, Stan P1099 Genestout, Lucie P0304, P0377 Geng, Xin P0243, W048 Genomes to Fields Consortium P0516 Genovesi, Dennis W299 Gent, Jonathan I W581 Georganas, Evangelos W713 George, Andrew P0430 George, Iniga S. W675 George-Jaeggli, Barbara W682 Georgi, L. P0995 Gepts, Paul P0754, W219 Geraldes, Armando W320 Gérardi, Sébastien W319 Gershwin, Laurel P0312 Gerttula, Suzanne W307 Gessese, Mesfin P0639 Gessler, Cesare P1104 Gessler, Damian C19, W311 Geurts, Pierre W849 Gezan, Salvador P0752, W221 Ghadge, Amita G W718 Ghaffari, Noushin P0040 Ghai, Pooja W011 Ghan, Ryan M. W675 Ghani, Saima S. P0536 Gheyas, Almas P0398 Ghose, Kaushik P0160 Ghosh, Sharmila P0333, W271 Giachetto, Poliana F P0289, P1170 Giacometti, Sonia P0014 Gianoglio, Silvia P1135 Gianola, Daniel W389 Gibbs, Richard A. P0073, W068, W139,

W360, W453, W861 Gibon, Yves W334 Gibson, David P1030 Gibson, Ryan P0523 Gidda, Satinder W086 Gielen, Jan P0663, W882 Gil, Juliana P0472 Gil, Rosa Juliana P1013, W380, W436 Gilbert, Kerri W732 Gilbert, M Thomas P P0324 Gilbert, Robert P0009

315

Gilkerson, Robert P0307 Gill, Clare A. P0278 Gill, Kulvinder P0015, P0610, W424 Gill, Navdeep P0950 Gill, Upinder S. P0774 Gilmore, Barbara P0923 Gimenes, Marcos A. P0136 Gimenez, Daniele Fernanda Revoredo

P0184 Ginolhac, Aurélien P0323, P0324 Gion, Jean-Marc P0989, W305 Giorgi, Debora W019, W540 Giovanniello, Valentina P0585 Giovannoni, James W227, W739 Girard, Chloe W590 Gitzendanner, Matthew A P1082 Giuffra, Elisabetta P0171, P0350, W445, W535

Giuliano, Giovanni W019, W180 Giusti, Juliana P0178 Gkoutos, Georgios P1123, W487, W613 Glass, N. Louise P0002, W349 Glenn, Mike P0875 Gless, Jordan P0340 Glikson, Vladimir A. P1194, W475 Glover, Natasha W691 Glowaca, Katarzyna P0026, W563 Gmitter, Fred G. P0215, P0924, P0926,

P0927, W162 Go, Yun Young P0339 Goddard, Mike E. G005, W023 Godfrey, James P0279, W143 Godin, C. W324 Godoy, Jayfred Gaham P0629 Godoy, José P0390 Goepfert, Simon P0870 Goesmann, Alexander P0141 Goettel, Wolfgang P0700, W752 Goetz, Frederick P0256 Goetz, Giles P0256 Gogniashvili, Mari Z. P0583 Gold, John R. P1025, P1033 Goldammer, Tom P0234 Goldberg, Robert B W845 Goldman, Maria Helena de Souza P0180 Goldman, Sam W058 Golebiewski, Marcin P0303 Golicz, Agnieszka P0469, W604 Gomes de Sá, Pablo H. C. P0459 Gómez-Orte, Eva W871 Gonçalves, Helena P0089 Gonda, Itay W227 Gonda, Michael G. P0264 Gong, Guoyi W225 Gong, Hong P0492 Gong, Ji-Ming P0152 Gong, Lei W213 Gong, Yunchen P0773 Gong, Yundeng W109 Gongora, Carmenza E. W178 Gonzales, Michael P0699 Gonzales, Michael D W232 Gonzalez, A W221 Gonzalez, Abiezer P0752

Gonzalez, Irene P0746 González, Mauricio P0874 Gonzalez, Michael V. P0381 Gonzalez, Rayner P0356, P0360 Gonzalez-Ceron, Fernando W651 Gonzalez-Ibeas, Daniel P0987, P0988,

W332, W569 Gonzalez-Martinez, Santiago W634 Gonzalez-Reymundez, Agustin P1174 Good, Allen W337 Goodrich-Blair, Heidi P1020 Goodstein, David M. P1124, P1126,

W326, W409, W780 Goodwin, Sara W088 Goolsby, John W640 Gordon, Sean W099, W566 Gordon, Vanessa S. P0009 Gore, Michael A. P0745, W208 Gorjanc, Gregor W533 Gorni, Chiara P0313 Gos, Gesseca W894 Goss, Erica W115 Götherström, Anders W238 Goto, Akitoshi P1148 Goto, Ronald M. P0413 Goto, Shingo W163 Götz, Stefan P1152 Gou, Jin-Ying W603 Goubet, Pauline P0796 Gouker, Fred E. W008, W720 Gourreau, Jean-Marie P0304 Gouzy, Jérôme P0950 Govindarajulu, Rajanikanth W711 Gowda, Manje P0542 Gowda, Siddarame T. P0434 Gowik, Udo P0179 Goyache, Felix W442 Gqola, Bomikazi N P0649 Grabowski, Paul P0023, W567 Graça, Clara S. P0974 Gradziel, Thomas M. P0917 Graebner, Ryan P0664 Graf, Robert P0467 Graham, Michelle A. P0193, P0699,

P0721, P0731 Graham, Sean W P1086 Gramacho, Karina Peres P0997, W120 Gramzow, Lydia P0797, P1008 Grandke, Fabian P1177 Grando, Stefania P0566 Graner, Andreas W381, W881 Grant, David P0695, P0735 Grant, Joshua N. P0021 Grant, Trudi Nadia Lavinia P0881 Grassa, Christopher J. P0950 Grau, Emily C19, P0988, W311, W569 Gray, Dennis P0881, W547 Gray, Miranda M W639 Gray, Sharon B. W356 Graybosch, Robert P0592 Graziosi, Giorgio W179 Gredler, Birgit P0281 Green, Allan W087 Green, Jonathan A. W830

Green, Richard W863 Greenberg, Anthony P1187 Greenhalgh, Robert P0145 Greenham, Kathleen W101 Greenspan, Alex W394 Greer, Lee F. W637 Gregory, Brian D. W790 Gregory, Richard P1069 Grennan, Aleel P0010, W084, W814 Gresham, Cathy W646 Gress, Laure P0361 Greve-Pedersen, Morten P1050, P1054,

P1055, W427, W433 Grewe, Felix W543 Griffiths, Andrew G. P0776, P0779 Griffiths, Marcus P0057, W709 Griffiths, Phillip P0745, W169 Griffiths, Simon P0057, W709 Grimwood, Jane P0699, P0707, P0965,

W326, W529, W780, W784 Grinberg, Nastasiya F. W430 Grissom, Stephanie P0333 Groenen, Martien A.M. P0350, W535 Grohs, Cécile P0304 Groover, Andrew W306, W307 Groover, Andrew T. W742 Grossi-de-Sa, Maria Fatima P0966 Grossi de Sa, Maria Fatima P0725 Grossl, Paul P1049 Grotewold, Erich P0793 Groth, Don P0512 Group, the AdaptMap W441 Grover, Corrinne E. W213, W631 Gruber, Margaret Y. P0772 Gruissem, Wilhelm W122 Grumet, Rebecca P0937 Grüneberg, Wolfgang P1040 Grunwald, Niklaus W348 Gu, Cuihua P0734 Gu, Jenny P0068, P0519 Gu, Li-Li P0805 Gu, Liuqi P0438 Gu, Suna P0371 Gu, Xi P0976, W303 Gu, Xiaorong P0406 Gu, Xingyou W595 Gu, Yong Q. P0577, P1043, W460,

W474 Guadagno, Carmela Rosaria W101 Guajardo, Joselin P0993 Guan, Feng W109 Guan, Le Luo W828 Guan, Peizhu W341 Gubbels, Emily A. W543 Gubler, Frank W681 Guduru, Krishna Kumar P1079 Guédon, Y. W324 Guerche, Claire W478 Guhlin, Joseph P0768, P0771 Guichoux, Erwan P0989 Guida, Stephanie M. P0170 Guignon, Valentin P0944 Guigo, Roderic P0746, P0750, W201 Guilhabert, Magalie W285

316

Guillard, Lenaīg P0535, W262 Guillon, Eline P0796 Guiltinan, Mark W114, W117 Guimaraes, Claudia W002 Guimarães, Patricia Messenberg P0741, P0743, W866

Guimaraes, Simone P0368 Guimarães, Simone E.F. P0351, P0366 Gunasekara, Chathura P0967 Gundlach, Heidrun W432 Gunupuru, L. W463 Guo, Baozhu P0208, P0739, P0742 Guo, Hui W280, W583, W865 Guo, Jia P0018 Guo, Jie W703 Guo, Shaogui W225, W229 Guo, Xiang W366 Guo, Yi-Ning P0784, P0785, W767 Guo, Ying P0406 Guo, Yufang P0867 Guo, Yufeng P0967 Guo, Zifeng P0606 Gupta, Namita P0060 Gupta, Ravi P0954 Gupta, Sarika W615 Gupta, Thejas Makam Shivakumar

P1046, P1047, P1072, W806 Gupta, Vikas P0776 Gurtowski, James P1138, W088 Gusmini, Gabriele P0682, W536 Gut, Ivo P0390 Gut, Marta P0390 Guthrie, Cade W085 Gutierrez, Alejandro P. P0235 Gutierrez, Lucia P1174 Gutierrez, Osman A. W119 Gutierrez, Rodrigo A W355 Gutiérrez, Rodrigo A. P1029, W058 Gutierrez-Gonzalez, Juan J P0133 Guttieri, Mary P0603, P0605 Guttman, David P0773 Guyot, Romain P0948, W180, W181,

W182 Guzmán, Carlos P0596, P0599 Ha, Jungmin P0150 Haag, Maria T. P0837 Haaning, Allison M. P0661 Haas, Matthew William P0190 Haase, Bianca W128 Haberer, Georg W559 Habib, Madhia P0946 Hackett, Kevin P1118 Hadacek, Franz W189 Haddad, Gabriel W400 Haddad, Nasri P0621 Hadfield, Tracy P0382 Hadziabdic, Denita W547 Haegeman, Annelies W431, W564 Hagen, Darren E. P0267, P0268, P1117,

W147 Hague, Steve P0964, W016, W685,

W848 Hahn, Michael G. W076 Haile, Jemanesh K P0593, P0617

Haiminen, Niina W357, W434 Haley, Scott P0634 Hall, Anthony P0479, P0573, W268 Hall, Brian P0431 Hall, Megan P0026, W563 Hall, Neil P0433, P0479, P1069, W268 Hall, Richard P0519, P1183 Hallock, Barbara L. C27, P0075 Halperin, Eran W227 Hamann, Andreas W317, W573 Hambrook, David P0279, W143 Hamelin, Richard W351 Hamerman, Inbal P0572 Hamidou, Falalou P0208 Hamilton, John Paul P0842 Hamilton, Ruaraidh W450 Hammer, Graeme L W682 Hammer, Sabine P0373 Hammond, Boyd P0849, W689 Hamon, Perla P0948, W180, W181,

W182, W710 Hamon, Serge P0948, W180, W181,

W182 Hamwieh, Aladdin P0100 Hamzic, Edin P0423 Han, Bal-Kum P0938 Han, Bin P0492 Han, Fangpu P0094, P0525, W366,

W585 Han, Yi P0073, W139, W360, W453,

W861 Hanawa, Yumiko P0612 Handa, Hirokazu P0612 Handa, Takashi W549 Handler, David C.L. W675 Hane, David C09 Hane, James W491 Hanke, Viola M. P0897, P0900 Hanley-Bowdoin, Linda P1181, W267, W741

Hanlon, Matt C23, P0790, P0792, W059 Hannoufa, Abdelali P0772 Hansen, Julie W296 Hansen, Peter J. W155 Hao, Jingjie P0131 Hao, Xingjie W109 Haque, Taslima P0508 Harada, John W845 Hardigan, Michael P0842, W248 Harding, Scott A. P0976, W303 Hardner, Craig P0894 Hardy, Matt W825 Hare, Matthew P. W012 Harel-Beja, Rotem W227 Hariharan, Nivedita P1046, P1072, W806 Harkess, Alex W620 Harland, Richard M. W826 Harlizius, Barbara P0351 Harmanova, Klara P0833 Harmon, Frank P0203 Harmon, Stephanie P0081 Harper, Lisa C10, P1123, W487, W613 Harris, Donna K. P0730 Harris, Glenn P0999, P1003

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P1186, W014, W471, W886 Hatlen, Andrea P0819 Haug-Baltzell, Asher K P0402 Haun, William J. W600 Hauser, Heiko P0064 Havey, Michael J. W545 Hawken, Rachel J. P0423, P0430 Hawkins, Simon W P1042, W293 Hayashi, Satomi P0469, P0590, P0824,

W014, W471, W604 Hayashi, Takeshi P0878, P1179 Hayden, Matthew W681 Hayden, Matthew J P0639, P0641 Hayes, Ben P0639, W297 Hayes, Chad P0555, P0561, W750 Hayes, Kevin R. W771 Hayes, Patrick M. P0664, P0673 Hayes, Richard D P1124, W409 Haynes, Paul A. W675 Hays, Dirk P0634 Hayward, Alice C W796 Hazen, Samuel P W076, W097 Hazzouri, Khaled Michel W894 He, Chunlin W761 He, Fei P1138 He, Mingze P1123, W487, W613 He, Qiang P0484 He, Sangang P0172 He, Weiming P0783, W009 He, Yanghua P0416, W643 He, Yong P0588, P0620 He, Yuke P0200 He, Yuqing W683 Healey, Adam P0994 Hearne, Sarah P0514 Heaton, Michael P. W453 Hebard, F. P0995 Hecht, Benjamin P0260, W638 Heckerman, David W818, W819 Heckmann, Stefan W589 Hefer, Charles A. W320 Hefferon, Tim P1109 Hefner, Ethan P0340 Hegarty, Joshua M W033

317

Hegarty, Matthew P0233, W041, W430, W540

Hegeman, Adrian P0887, W419 Heidaritabar, Marzieh P1172 Heiner, Cheryl P0073, P1183, W360 Heinig, Rebecca W119 Heintzman, Peter D. W239 Heinze, Berthold P0982, P0991, W634, W641

Heinze, Jürgen W524 Heitkam, Tony W071 Hellens, Roger P. W331 Heller-Uszynska, Katarzyna P0052 Hellsten, Uffe W780 Helm, James H. P0600 Hemeg, Hassan A. Hemeg P0471 Hemmati, Melody Naghmeh P0726,

P0729 Hemstad, Peter P0873, P0887, W419 Henderson, Ian R. W690 Hendrickson, Christopher P0146, P0858 Hendrix, Keith W392 Henry, Christopher P1138 Henry, Isabelle W717 Henry, Isabelle M. W588, W622, W742 Henry, Julie L. P0455 Henry, Lucas P. P0949 Henry, Nate W304, W878 Henry, Robert P0486, W171, W714 Hentrich, Klaus P0079 Heo, Eun-Beom P0484 Heo, Kweon P0026, W563 Herai, Roberto H. P0931 Hérault, Frédéric P0423 Herb, Dustin W. P0673 Herbert, Denise P0141 Herdy, Joseph R. P0120, W743 Hermans, Christian W266 Hermans, Christian RM P0809 Hernandez, Alvaro P0031, P0046, W229 Hernández, Carlos Moisés P0594 Hernandez, David P0043, P0775 Hernandez, Georgina W493 Hernandez, Richard Bryan P0025, W566 Hernandez Oñate, Miguel P0746 Herndon, David R. P0381 Herndon, Nicolae P0134 Herren, Gerhard P0648 Herrera, Jesus Rommel V. W109 Herrera, Raul P0993, W325 Herrera-Estrella, Alfredo P0746, P0750 Herrrera-Estrella, Luis P0216 Hertel, Klemens W791 Hertz-Fowler, Christiane P0433 Heslop-Harrison, Pat W071, W295 Hess, Jon W638 Heuertz, Myriam W797 Hewitt, Seanna L. P0858 Heyduk, Karolina P1017 Hibberd, Julian M P0179 Hickey, John W533, W763, W778 Hickey, Lee P0678 Hickey, Luke P0097 Hicks, Derrick W085

Hidalgo, Oriane W426 Hidema, Jun P0799 Hiebert, Colin W883 Higgins, Janika P0111 Hilario, Elena P0972, W013, W331 Hilder, Cassie W085 Hill, Josh P0040 Hill-Skinner, Sarah Ellen P0183 Hilley, Josie L. P0559 Himmelbach, Axel W363, W889 Himmelbauer, Heinz P0746, P0750 Hirai, Masami Yokota P0685 Hirakawa, Hideki P1121, W100 Hirano, Takashi P0749 Hirao, Tomonori P0229 Hirasawa, Tadashi P0497 Hirel, Bertrand P0535, W262 Hiroi, Kenichiro P0801 Hirose, Aya P0712 Hiroyuki, Ohta W526 Hirsch, Candice P0540, W184 Hirsch, Cory D. P0540, P0843, W184 Hladnik, Matjaž P0885 Hlongoane, Tsepiso P0643, P0646 HM, Vamadevaiah P0954 Ho, Chak-Sum P0373 Ho, Wai Kuan P1075 Hoal, Eileen W109 Hoang, Thy P1165 Hobbs, Matthew W635 Hocking, Paul M. P0396, P0398 Hodac, Ladislav W189 Hodgins, Kathryn A. W317, W573, W893 Hodnett, George W640 Hoegenauer, Kevin A. P0956 Hoehndorf, Robert P1123, W487, W613 Hoerandl, Elvira W189 Hofberger, Johannes A. W627 Hoff, Jesse P0275 Hoff, Jesse L. W154 Hoff, Katharina W203 Hoffman, Gregg G. W741 Hoffmann, Federico G. W279 Hoffmann, Hermann P0011 Hoffmann, Thomas P0918 Hoffmeier, Andrea P0797 Hofreiter, Michael P0324 Hojsgaard, Diego W189 Hok, Puthick P1129 Holalu, Srinidhi V. P0949 Holdgate, Sarah P0602, W465 Holdsworth, William L. P0744, W208 Holl, Heather M. P0331 Holland, Doron P0901 Hollenbeck, Christopher M. P1025, P1033

Holliday, Jason W317, W573 Holloway, Chelsee P0169 Holm, Karl W894 Holm, Lars-Erik P0285 Holme, John P0079 Holmes, Ian C02, P0432, P1154, W411 Holmes, Mark P0569 Holt, Carson W569

Holt, Tim P0169, P0310 Holtz, Michael P0600 Holtz-Morris, Ann P0988, W568 Hon, Ting P0049, W360 Honaas, Loren P1078 Hong, Yeong Ho P0421 Hong, Yeon Joo P0802 Hong, Yue W587 Hongo, Jorge A. P1140 Hooi, Wei Yeng W552 Hoopen, Martijn ten W115 Hoover, Cindi A. P0324 Hopper, Colleen P0052 Hopper, Daniel W. W675 Hori, Kiyosumi P0056, W170 Hori, Koichi W526 Horn, Renate P0998 Hornoy, Benjamin W319 Horsley, Richard P0672 Horvath, Aniko P0920 Horvath, David P. P0157 Hoshikawa, Ken P0850, P0860 Hosokawa, Munetaka P0865 Hossain, Khwaja G P0623 Hossain, Md. Alamgir P0505 Hossain, Md Shakhawat W846 Hotton, Sara K. P0082 Hou, Yanlin W366 Hou, Zhuocheng P0175 Houben, Andreas W589 Hough, Josh W719 Hourlier, Thibaut P1002 Houston, Ross D. W046 Howad, Werner P0915 Howard, Rebecca P0079 Howarth, Catherine P0682, W536 Howell, Elaine C. P0795 Howell, Tyson R. C18 Howerth, Elizabeth W. W651 Høyheim, Bjørn P0237 Hoyos-Villegas, Valerio P0716 Hřibová, Eva P0109 Hsieh, John CF. P0395, P0399 Hsieh, Tzung-Fu W538 Hsing, Yue-ie C. P0201, W839 Hu, Jinguo P1065 Hu, Songnian P0319 Hu, Xiaoxiang P0406 Hu, Yan P0454 Hu, Zhiliang P1157 Hua, Jinping W215 Huala, Eva P1123, P1130, W056, W487,

W613 Huang, Bevan E P0604 Huang, Emma W681 Huang, Jiaying P0702 Huang, Jinming W252 Huang, Jiyue W584, W587, W688 Huang, Lei W703 Huang, Lin P0028, P1027 Huang, Lin-Chien P0448 Huang, Linkai P0212 Huang, Linzhou W700 Huang, Mao P0598

318

Huang, Meng C28, P1163 Huang, Ming P0215 Huang, Pu P0570 Huang, S Carol W358 Huang, Tengbo P0930 Huang, Wei P0699, P0737 Huang, Xuehui P0492 Huang, Yan P0334 Huang, Yinghua P0135, W745 Huang, Yung-Fen W537, W538 Huang, Zhiyong P0274 Hubbard, Allen P0401, P0408, P1150 Huber, Dudley P0986 Hubner, Sariel P0611, P0950 Hucl, Pierre J. P0588 Huddleston, John P0308 Hudson, Matthew E. W751 Hudson, Nicholas James P0173 Hueber, Yann P0109, P0944 Huefner, Neil D. W847 Huerta-Espino, Julio P0647 Huettel, Bruno P1084 Hufford, Matthew P0529, P0531, W251 Hufford, Matthew B. P0520 Hufnagel, Barbara W002 Hughes, Daniel S. T. W068, W139,

W453, W861 Hughes, David W808 Hughes, Jennifer F P0322 Hughes, Timothy R. W358 Huh, Jin Hoe P0132, P0196 Huisman, Abe P0376, W824 Huits, Henk P1061 Hulbert, Scot P0461 Hulse-Kemp, Amanda M. P0956, P0958 Humann, Jodi L. C03, P1153, W571 Hume, David P1114 Hume, Rachael P0843 Hummel, Aaron P0093 Hummel, Gregoire P0039 Hummel, Iréne W308 Hummel, Tracy P0686, W096 Hunt, Arthur P0197 Hunt, Toby C08, W371, W825 Hunter, Courtney P0343 Hunter, David P1129 Hunter, Wayne W064, W065, W167 Huo, Naxin P0221, P0577, W460, W474 Hur, Yoon Kang P0829, P0831 Hurni, Severine P0648, W243 Huson, Heather J P0279, P0384, W137, W143, W144, W155, W440, W443

Husted, Søren P0668 Hutchins, Elizabeth D. P0116, P0445 Hutchison, Jana L W141 Huteau, Virginie W796 Huttly, Alison K. P1094, W835 Huynh, Bao Lam P0204, P0784, P0786,

W489, W766, W767 Huynh, Mark D. C07 Huynh, Mindy P0341 Huynh-Thu, Vân Anh W849 Hwa, Teh-yang P0501 Hwang, Chin-Feng P0873

Hwang, Eun-Young P0699 Hwang, Mi Sook P0220, P1087 Hwu, Kae-Kang P0862 Hyde, John P0232, P0236 Hyma, Katie P0873, P0882, W012,

W419 Iamartino, Daniela P0313, W106, W108,

W109 Iazvovskaia, Svetlana C21, P1120 Ibañez, VIctoria W164 Ibarra-Laclette, Enrique P0216 Ibelli, Adriana Mercia Guaratini P0176,

P0418 Ibrahim, Amir P0634 Ichihara, Hisako P1121 Ichinoseki, Runa P0799 Idris, A.S. P0005 Iezzoni, Amy W335 Ignacio, Juan Carlos I. P0509 Illa-Berenguer, Eudald P0856 Ilut, Daniel W199 Im, Ji-Hoon P1068, W895 Im, Sung Oh P1087 Imani, Samira P0115 Imperial, Juan P0473 Incerti, Ornella P0578 Inche, Adam P1182 Iñiguez, Luis P W493 Innes, Roger W. W607 Inoue, Kentaro W603 Iorizzo, Massimo P1077, W222, W250 International Buffalo Consortium W106,

W108, W109 International Goat Genome Consortium,

(IGGC) W137 International Wheat Genome Sequencing

Consortium, The P0571, W473 Iqbal, Muhammad P0536 Irish, Vivian F. P0930 Isaacson, Tal P0901 Isgren, C.M. P0335, P0336 Ishiga, Yasuhiro P0774 Ishihara, Masayuki P0612 Ishii, Takashige W701 Ishikawa, Tomomi P1148 Ishimoto, Masao P0706, P0712, P0713 Isidro Sánchez, Julio P0595 Isik, Fikret P0990, P0992 Iskra-Caruana, Marie-line W112 Islam, Md Nurul P0069 Islam, Md Sariful P0955 Islam-Faridi, Nurul P0995 Islamovic, Emir W538 Islas-Trejo, Alma P0310 Ismail, Abdelbagi M. P0508, P0509 Iso-Touru, Terhi P0284 Isobe, Sachiko P0056 Ito, Kikukatsu P0154 Ito, Yukihiro P0799 Itoh, Hironori P0500 Itoh, Takeshi P0511, P0749 Iturra, Carolina P0062 Ivamoto, Suzana Tiemi P0213 Ivanov, Nikolai V. P0870

Iwano, Megumi P0800 Iwata, Hiroyoshi P0847, P1166, P1179 Iyama, Yukihide P0495 Izawa, Takeshi P0500 Izgu, Tolga P1031, P1101 Jääskeläinen, Marko W871 Jabbari, Jafar P0777 Jabeen, Farzana P0567 Jaccoud, Damian P0052 Jack, Peter P0602, W465 Jackson, Aaron W010 Jackson, Eric W538, W539 Jackson, Scott A. P0699, P0707, P0753,

W628, W866 Jaffe, David B. P1000, W090, W274 Jaffrezic, Florence P0171 Jaganathan, Deepa P0209, P0782 Jahn, Daniela P0991, W641 Jahoor, Ahmed P0659 Jain, Akshay W058 Jain, Rashmi P0493, P1138 Jain, Ritesh P0434 Jaiswal, Pankaj P0872, P1123, W487,

W613, W842 Jakob, Katrin W810 Jakse, Jernej P0104, P0463, P0885, P1067

Jakubiec, Jadwiga P1026 Jaligot, Estelle W552 Jamal Schafer, Leen C25, P1149 Jamilloux, Véronique W478 Janečka, Jan E P0322 Jang, Geupil W708 Jang, Hosung P0196 Jang, Insu P1110, P1137 Jang, Mi-So P0822, P0823 Jang, Woojong P1081 Jang, Young-Seok P0825 Jang, Young Eun P0709 Jang, Yun-Jung P0938 Janila, Pasupuleti P0208, P0739, P0742 Jankowska, Maja W589 Jannink, Jean-Luc C09, P0614, P0647,

P0653, P0656, P1187, W501, W537, W763, W778

Jänsch, Melanie P0900, P1104 Jansen, Marcus P0054 Jansky, Shelley P0840, W738 Janss, Luc L. P1050, P1054, W427,

W433 Janss, Luc LLG. P0352 Janssen, Antoine P0940, P1189 Janz, Dennis W308 Jareczek, Josef W213 Jarquin, Diego P0708 Jarvis, Erich P0402 Jasieniuk, Marie W851 Jasinovica, Svetlana P0033, P0035 Jasonowicz, Andrew P0256 Jastrebski, Sara F. P0400 Javornik, Branka P0463, P1067 Jaxtheimer, Justin P0333 Jay, Jeremy W538 Jayakodi, Murukarthick P0437, P1081

319

Jayale, Ashwin S. P0208 Jeanotte, Richard P0134 Jeddeloh, Jeffrey A. P0522 Jellen, Eric N. P0681, P1044, W539 Jellen, Rick W538 Jenkins, Jerry W305, W326, W345,

W529, W713, W780, W784 Jenkins, Johnie N P0955 Jenkins, Joseph W253 Jenko, Janez W533, W763 Jennings, Tara N. P0968 Jensen, Christian Sig P1050, P1054,

P1055, W427, W433 Jensen, Elaine P0028 Jensen, Jens D P0659 Jensen, Just P0352, P0659, P1050,

P1054, P1055, W427, W433 Jensen, Kevin P1049 Jensen, Philip P0898 Jeon, Eun-Ji P0823 Jeong, Dong-Hoon P0498, W727 Jeong, Namhee P0699 Jeong, Soon-Chun W754 Jeong, Won-Joong P0220, P1087 Jerabkova, Hana P0191 Jesenicnik, Taja P0463 Jestrow, Brett W558 Jeuken, Marieke W198 Jeunger, Thomas P0508 Ji, Guoli P0182 Jia, Gaofeng P0101 Jia, Melissa W011 Jia, Qidong P1009 Jia, Yulin W011 Jia, Zhangcai P0943 Jian, Jainbo P0783, W009 Jian, Jianbo W491 Jian, Jiang P0691 Jiang, Chen P0240, P0242, P0245 Jiang, Fengying P0635 Jiang, Hui P0570, P1016 Jiang, Jiming P0842 Jiang, Ke W615 Jiang, Liang W700 Jiang, Ligang P0943 Jiang, Ning W870 Jiang, Shicui P0156 Jiang, Yiwei W567 Jiang, Zhihua P0354, P1191, W826 Jiao, Chen W229 Jiao, Yinping P0555, W750 Jiao, Yuannian W865 Jighly, Abdul Qader P0621 Jimenez, Esbal W155 Jin, Cai P0110 Jin, Dianchuan W583 Jin, Huizhe W865 Jin, Yue W365 Jing, Runchun P0521 Jo, Aru-Na P0977 Jo, Sung-Hwan P0164 Jo, Yeong Deuk P0865 Jodari, Farman W010 Joecker, Anika P1185, W313

Joest, Moritz W890 Joets, Johann P0070 Jogdeo, Sanjuro P0968 Joh, Ho Jun P1081 Johnson, Charles D. P0040 Johnson, Eric T. P0027 Johnson, Evan B. P0835 Johnson, Gary S. P0388, W111, W636 Johnson, Jeremy P1000, W090 Johnson, Kim L. P1184 Johnson, Loretta C P0134, P1030, W639 Johnson, Maren A P0623 Johnson, Patricia A. P0409 Johnson, Patricia L W390 Johnson, Rebecca N. W635 Johnson, Rodger K. P0367 Joly, Jacques W334 Jones, Brian P0807 Jones, Don C. C14, P0953, P0956 Jones, James P0752, W221 Jones, Jeryl P0387 Jones, Jonathan DG P0844 Jones, Laura W418 Jones, Samuel S. P1078 Jones, Sarah I. P0205 Jones, Simon R. M. W438 Jonsson, Hákon P0323, P0324 Jordan, David R. P0071, P0678, W682 Jordan, Katherine W032 Jordan, Mark P0227, P0618 Jordan, Marsha P0613 Jordana, Jordi W442 Jorge, Pedro P0089 Jørgensen, Uffe W434 Jorrín, Beatriz P0473 Joseph, Batieno T. Benoît P0784, W766,

W767 Joseph, Charles P0087 Josephs, Emily W894 Joshi, Meenu P0162 Joshi, Nikhil P0327 Joshi, Shailesh Vinay P1007 Joshi, Trupti P0060, P0694, P0696 Juanillas, Venice Margarette P0489 Juenger, Thomas W782 Juenger, Tom P1028 Juin, Hervé P0423 Juliano, Gabriela F. P0551 Julio, Emilie P0869 Jun, YoungKeun P0896 Jung, Hee-Jeong P0151 Jung, Hyun Shin P1087 Jung, Je Hyeong P0546, P1092, W813,

W814, W833 Jung, Je Won P0437 Jung, Jungsu P0861 Jung, Sook C13, C14, P0888, P0953, W162, W872, W874

Jung, Woo-Young P0353 Jungerius, Annemieke P1061 Junqueira, Vinicius P0085 Jupe, Florian P0844 Juretic, Nicoleta P1183 Jurman, Irena W179

Juskiw, Patricia P0600 Kabeta, Yadeta P0600 Kacar, Yildiz P1031, P1101 Kachman, Stephen D. P0367, P0374 Kaczmarek, Malgorzata P0188 Kadam, Suhas W706 Kadarmideen, Haja N. P0352 Kadri, Samir M. P0177, P0439 Kaeppler, Shawn W184, W567 Kaga, Akito P0706, P0713, P0749 Kagale, Sateesh P0581 Kage, Udaykumar P0638 Kahla, A. W463 Kahles, Andre P0145 Kahraman, Abdullah W394 Kain, Steven R P0029 Kajala, Kaisa W356 Kajikawa, Masataka P0939 Kajita, Kei W333 Kajiya-Kanegae, Hiromi P0847 Kakaradov, Boyko C25, P1149 Kakeda, Katsuyuki P0612 Kalavacharla, Venu (Kal) P0024, P0623,

P0756, P0757, P0759, P1073, W402, W494

Kalberer, Scott R. C11, P0690, P0697, P0735, P0737, P1123, W223, W487, W613

Kalbfleisch, Ted P0319 Kalbfleisch, Theodore S. P0320, P0324,

P0339, W276 Kalderimis, Alex C23, P0790, P0792,

W059 Kale, Sandeep P0209 Kale, Sandip M P0782, P0788 Kalla, Sara E P0328 Kaloshian, Isgouhi P0140 Kambiranda, Devaiah M. P0883, P0886 Kamineni, Lakshmi Praveena P0401 Kaminuma, Eli C30, P1131, W163 Kamphuis, Lars W491 Kanamori, Hiroyuki P0511, P0706 Kanayama, Yoshinori P0850 Kandel, Ramkrishna P1065 Kandel, Shyam P0981, W263 Kandula, Suresh Raju P1079 Kane, Nolan P0950, W256, W849 Kanegae, Hiromi P1125 Kanehisa, Minoru W205 Kang, Byoung-Cheorl P0865 Kang, Jin-Ho P0865 Kang, Jungtaek P0349 Kang, Kyu-Suk P0977 Kang, Yang Jae P0747 Kannan, Baskaran P0010, P0546,

P1093, W625, W814, W833 Kanno, Maasa P0852, P1122, P1125 Kantar, Melda P0633 Kantar, Michael B. W403 Kantarski, Traci R. P0579 Kantartzi, Stella P0711, P0714 Kanth, Bashistha P0219 Karadsheh, Amer P0621 Karalius, Joseph P1156

320

Karamycheva, Svetlana C23, P0790, P0792, W059

Karan, Ratna P0010, P0546, W814, W833

Kardaisky, Igor P1185 Karingula, Vijay C11 Karkkainen, Marko W500 Karlen, Steven D. P0027, W094 Karmakar, Kanika W718 Karp, Peter D P0129 Karpinski, Stanislaw P0148, P1133 Karthikeyan, Savita P1046, P1072,

W806 Kassem, Abdelmajid P0711, P0714 Katageri, Ishwarappa S P0954 Katam, Ramesh P0886 Kataoka, Tomomori P0056 Katari, Manpreet S. W058 Katayose, Yuichi P0706 Kato, Atsushi P0939 Kato, Kenji W879 Kato, Yoichiro P1085 Katta, Krishnamohan P0778, P0781,

P0782 Katzir, Nurit W227, W229 Kaur, Ramanjot P0610 Kaur, Simerjeet P0015 Kavi Kishor, P B P0562, P0782 Kawada, Daiki P0612 Kawahara, Yoshihiro P0511 Kawanabe, Takahiro W100 Kaya, Erdal P1036 Kayang, Boniface W770 Kearns, Dan P0391 Kearse, Matt P1145, P1171 Keating, Aileen F. P0348 Keating, Shaunagh P0057, W709 Keays, Maria P0224, W372 Kedra, Darek P0746 Keeble-Gagnere, Gabriel W472 Keele, John W. P0264 Keinath, Melissa P0446 Keliet, Aminah W421 Kelleher, Neil L W350 Keller, Beat P0641, P0648, W243 Keller, Nancy P W350 Keller, Stephen W257, W318 Kelly, Laura J. W313 Kelly, Matthew P0366, P0368, W149 Kelton, David P0298 Kemena, Carsten W524 Kenigswald, Merav W227 Kenney, Brett P0248 Kent, Matthew P. P0244 Kent, Matthew R W581 Kenyon, Lawrence P0941 Keough, Brendan P0035, P0071 Keppel, Cassie P0084 Kerhornou, Arnaud P1119 Kern, Colin P1116, W279 Kersey, Paul J. C17, P0654, P1119, P1132, W414

Kershner, Kevin P0066 Kessler, Michael W797

Kettener, Karine P0550 Ketudat-Cairns, Mariena W109 Keurentjes, Joost J.B. W308 Keyser, Matthew P0263 Khaing, Aye Aye P0484 Khan, Aamir W P0211, P0778, P0781,

P0788, P0789, W212 Khan, Asif P0855 Khan, Awais P1040 Khan, Azeem Iqbal P0946 Khan, Muhammad Y P0536 Khan, Saad M. P0696 Khan, Sumaiya Farah P0508 Khan, Wasif U P0527, P0545 Khan, Zareen P0981, W263 Khandakar MD, Rayhanul Kabir P0484 Khateeb, Kamel P0901 Khatib, Hasan P0166 Khatun, Amina P0371 Khazi, Fayaz Khera, Pawan P0742 Khodwekar, Sudhir P0969 Kholodov, Mike P1109 Khoo, Choon Kiat P0398 Khorasani, Mahsa P0981, W263 Kianian, Shahryar F. P0589, P0628,

W544 Kich, Jalusa Deon P0358 Kidd, Jeffrey M. W131 Kiefer, Christiane P0827 Kiggundu, Andrew P1102, W073 Kijas, James P0382, W455 Kijas, James W. W139, W453 Kikuchi, Kazuhiro P0058 Kikuchi, Shinji P1063 Kikuchi, Shoshi P0499 Kilaru, Aruna W082 Kilian, Andrzej P0052, P0514, P0590,

P0594, P0920, P1129, W502 Kilian, Benjamin P0858, W881 Killian, Andrzej W461 Kilper, Roland P0078 Kim, Bellbull W212 Kim, Changhoon W212 Kim, Changsoo W810 Kim, Daeil P0103, P0904, P0906, P0907 Kim, Do-Soon P0723, P1068, W895 Kim, Eui-Soo P0348, P0421, W026,

W150 Kim, Heebal P0291, P0325, P0357,

P0365, P0450 Kim, Hyun Hee P1081 Kim, HyunJung P0490, P0861 Kim, In-Jung P0928 Kim, Jaebum P0274 Kim, Jaemin P0357 Kim, Jae Woo P0312, W147 Kim, Jae Yoon P0546, W814, W833 Kim, Jay W. W524 Kim, Ji-Eun P0164 Kim, Jihun W212 Kim, Jin-Won P0723, W895 Kim, June-Sik P0132 Kim, Ki Sun P0132

Kim, Kwan-Suk P0295, P0371 Kim, Kwang-Soo P0825 Kim, Kwan Suk P0316, P0348 Kim, Kyu-Won P0484, P0510 Kim, Kyung Do P0707, W628 Kim, Kyunghee P1081 Kim, Maria C23, P0790, P0792, W059,

W410, W876 Kim, Moon Young P0709 Kim, Myung-Shin P0863, P0866 Kim, Nam-Hoon P1081 Kim, Nam-Soo P0825 Kim, Sangmi P0164 Kim, Sangwook P0348 Kim, Seolah P0103, P0904, P0906,

P0907 Kim, Seong-U P0928 Kim, Seungill P0132, P0863, P0866 Kim, Shinje P0822, P0823 Kim, Soo-Hyung P0981, W263 Kim, Sungwon P0405 Kim, Sunhee P0220, P1087 Kim, Tae-Ho P0164 Kim, Tae-Sung P0484, P0510 Kim, Tae Hyun P0411, W666 Kim, Won-Il P0371 KIM, Won-Sik P0080 Kim, Wonyong P0457, W207 Kim, Woonsu P0299 Kim, Yong-Min P0863, P1110 Kim, Yong-Yul P0977 Kim, Yoon-Kyeong P0103, P0904,

P0906, P0907 Kimmel, Erik W421, W504 Kimura, Gaku P0491 Kinder, Bradley P0968 King, Andrew G. W635 King, Ian P. P0057, P0683, P0684,

W709 King, Julie P0057, P0683, P0684, W709 King, Matthew P0950 King, Ross D. W430 King, Zachary Raymond P0728 Kingham, Bruce P0759 Kippes, Nestor W879 Kiranmayee, K N S Usha P0562 Kirkpatrick, Brian W. W148 Kirst, Matias P0095, P0979, P0985 Kissel, Ewaut W070, W679 Kitajima, Akira W163 Kitajima, João Paulo P0466 Kitashiba, Hiroyasu P0820, W100 Kitts, Paul P1105, P1115, W273, W515 Klaas, Manfred W357, W434 Klagges, Carolina W330 Klatt, Simone W189 Klein, Antonia W524 Klein, Patricia E. W640, W682 Klein, Robert Richard P0071 Kleinhofs, Andris P0658 Klevorn, Claire W392 Klingeman, William W547 Klink, Vincent P. P0691 Klocova, Barbora P0589

321

Kloiber-Maitz, Monika P0553 Klopp, Christophe W557, W593 Klos, Kathy L. W538 Klosterman, Steve W436 Knaak, Carsten P0553 Knapp, Mary P1030 Knapp, Steve P0950 Knauf, Vic W085 Knight, Emilie P0683 Knol, Egbert P0366, P0368, W157 Knol, Egbert F. P0351 Knorst, Verena P1051, W300 Knoth, Jenny L. P0981, W263 Knox, Curtis P0033 Knox, Paul W808 Knox, Ron E. P0588, P0617, P0620 Koba, Takato P1063 Kobayashi, Asako P0056 Kobayashi, Fuminori P0612 Kobayashi, Masaaki P0852, P1125,

P1161, P1166 Kobayashi, Shozo P0878 Koch, Jennifer W304 Kochian, Leon W002, W854 Koczyk, Grzegorz P0188 Koeck, Astrid P0283, P0298 Koeda, Sota P0865 Koester, Dietrich P0064 Koganti, Prasanthi P. P0250 Koh, Chushin W809 Koh, Chu Shin P0580 Koh, Hee-Jong P0494 Koh, Yeon-Ju P0938 Kohel, Russell J. P0961 Kojima, Mikiko W734 Kokulapalan, Wimalanathan (Gokul) C10 Kol, Guy W227, W715 Kola, Gurulakshmi P0568 Kolb, Fred L. W538 Kölliker, Roland P1051, W300 Köllner, Bernd P0234 Koltes, James E. P0225, P0269, P1113,

P1157, W025, W108, W147 Komatsu, Kunihiko P0712, P0713 Komatsuda, Takao P0612, P0660,

P0671, W880 Kommadath, Arun W828 Kommineni, Radhika P0567 Kondo, Motohiko P0497 Kondo, Satoshi W526 Kong, Byung-Whi P0173, W671 Kong, Wenqian W748, W896 Konkin, David J. F. P0580 Kono, Atsushi P0878 Kono, Thomas J. Y. P1004, W403 Kono, Thomas Y. P0717 Kooyers, Nicholas J. P1034 Kopecky, David P0195 Korban, Schuyle W756 Koren, Sergey W089, W144, W440 Korf, Ian W535 Korhan, Hamdullah P0957 Koriabine, Maxim P0988, W568 Korie, Sam P1102, W073

Korlach, Jonas W180 Korneliussen, Thorfinn S. P0323, P0324 Korniviel, Pavel W010 Korol, Abraham B. P0575, P0589, P0611, P1194, W473, W475

Kosky, Anthony P1165 Kost, Thomas D P1104 Kosuge, Kazumasa P0713 Koszewski, Nick J. P0395, P0399 Koter, Marek D. P0864 Kottenhagen, Nina P0797 Kouakou, Koffie W112 Kozik, Alexander P1011, P1062, W196,

W380 Kozyra, Katarzyna P1026 Krafsur, Greta P0310 Kraiser, Tatiana P1029 Krajewski, Pawel P0188, W504 Kramer, Melissa W088 Kramer, Michael W843 Kranis, Andreas W533 Krasileva, Ksenia C18, W033, W183 Kremer, Antoine W795 Kreplak, Jonathan W210 Krerowicz, Amanda P0033, P0035 Kresovich, Stephen P0552 Krishnakumar, Vivek C23, P0003,

P0790, P0792, W059, W315, W410, W720, W876

Krishnamoorthy, Sriram P0415 Krishnamurthy, L P0206, P0209 Krishnavajhala, Aparna P0691 Krom, Nick P0137 Kropp, Jenna P0166, W021 Krueger, Robert R. P0947, W559, W560 Krugman, Tamar P0447, P0611, P0636,

P1027 Krutovsky, Konstantin V. P0984 Kryschenko, Alyona W093 Kubalakova, Marie P0086, W014, W471 Kubo, Yasutaka P0850 Kudapa, Himabindu P0206, P0209, P0211, P0782, W004

Kudo, Toru P1125 Kudrna, Dave W860 Kuehn, Larry A. P0264, W288 Kugler, Karl G. P0130, P0631 Kühn, Carsten P0234 Kuhn, Gerrit W180 Kuhn, Jonas P1145, P1171 Kuhn, Robert W891 Kujawa, Steve P0030 Külahoglu, Canan P1084 Kumar, Ajay P0589, P0590, P0615 Kumar, Akhil P0535, W262 Kumar, Dibyendu P0303 Kumar, Indrajit P0058 Kumar, Krishan P0600 Kumar, Sachin P0588, P0620 Kumar, Sandeep W601 Kumar, Santosh P1039, W291 Kumar, Satish P0622 Kumar, Sundip P0622

Kumar, Vinay P0206, P0208, P0781, P0788, P0789, W212

Kumar, Vivek P1138 Kumari, Sunita P1119, P1138 Kumar TK, Santosh P0343 Kumke, Katrin W589 Kumpatla, Siva P0523 Kunde-Ramamoorthy, Govindarajan

W567 Kunduru, Sravani P1079 Kuo, Richard P0393, P0398 Kupcsik, Laszlo W266 Kurata, Nori C30, P0492, P1131 Kurczynski, Krzysztof P1129 Kuriakose, Boney P0954 Kuroda, Yosuke W805 Kurokawa, Ken W526 Kuruganti, Sowmya P0988, W569 Kurz, Samantha P0179, P1084 Kushalappa, Ajjamada Chengappa

P0638 Kusi, Francis P0784, W766, W767 Kusumi, Kenro P0116, P0445, P0448 Kutzler, Michelle P0315 Kuznetsov, Anatoliy C04, P1142 Kwak, Myoung-hai W219 Kwak, Woori P0365 Kwan, Yen Yen W552 Kwicklis, Madeline P0533 Kwon, Hyung Wook P0437 Labadie, Karine P0597, W210, W473,

W795 Labate, Carlos A. P0112, W837 LaBlanc, Chantal W267 La Borde, Niegel D P0556, P0564 Labra, Massimo P1037 Lachagari, V B Reddy P0954 Lachagari, Vijay Bhaskar Reddy P1079 Lachance, Hannah P0296 Lacrima, Katia P0587 Laerke, Poul E W434 LaFave, Matthew C. P1139 Lahaye, Marc W334 Lai, Jinsheng P0520, P0525 Lai, Song-Jia W109 Lai, Zhao P0950 Lai, Zhou W851 Laidò, Giovanni P0585 Laimbeer, Parker P0842, P0845 Lake, Douglas F. P0116 Lakey, Nathan W556 Lakhanpal, Neha P0832 Lakhssassi, Naoufal P0710, P0732,

P0733, W405 Lalanne, Céline P0989, W593 Lalanne-Tisné, Guillaumme W334 Lam, Ernest P0077, P1186 Lam, Quyen W085 Lama, Martina P0916 Lamande, Shireen W128 Lambel, Shaunese W230 Lamberson, William R. P0378, P0380 Lambert, Bart P0813 Lambert, Joshua W. P0334

322

Lamont, Susan J. P0121, P0394, P0395, P0399, P0400, P0401, P0411, P0426, W028, W647, W770, W847

Lamour, Kurt Lamprecht, Matt P0069 Landaeta-Hernandez, Antonio J. W155 Landell, Marcos G. A. P0547 Landi, Vincenzo W442 Landolin, Jane W089 Lane, Thomas P0969, W304, W312,

W851, W878 Lang, Daniel W531 Lang, Zhihong P0520 Langdon, Tim W540 Lange, Matthias P1155, W616 Lange, Simone W203 Langhorst, Bradley W P0050 Langlade, Nicolas P0950, W849 Langley, Charles H. P0988, W332,

W568, W569 Langridge, Peter W680 Lanham, Brad P1129 Lanini, Brenda W230 Lanna, Dante P.D. P0290 Lanteri, Sergio P1135 LaPatra, Scott P0254 Laperche, Anne W265 Lapierre, Catherine W094 Larkin, Denis M. P0274 Larmande, Pierre P1111, W448 Laroche, André P0467 Larrain, M. Angelica P0260 Larroque, Hélène P0383, W444 Larson, Brandon W002 Larson, Steve P1049 Larsson, Anders P1086 Larzul, Catherine P0361, P0363 Lascoux, Martin W894 Lassaline, Mary P0341 Lassiter, Kentu P0173 Laten, Howard M. P0704 Latorre, Claudio P1029 Lau, Bayo W090 Laudencia-Chingcuanco, Debbie P0128 Launay, Amandine W421 Laurent, Thibaut P0869 Lavelle, Dean P1062, W196, W380 Laviola, Bruno Galvêas P0007, P0085 Lavulo, Lopeti T. P0107 Lawit, Shai J. W192 Lawley, Cynthia W106 Lawrence, Carolyn J. C10, P0516,

P1123, W487, W613 Lawrence, Gary W. P0691 Lawson, Nicholas L P0456 Lawton-Rauh, Amy W897 Laybats, Anthony W557 Lazo, Gerard R. W063 Le, David P1165 Lea, Peter J. P0535, W262 Leach, Jan E. W066, W172, W284, W855

Leakey, Andrew D.B P0517, P0518, P0538, P0569

Leal-Bertioli, Soraya C M P0136, P0741, P0743

Lear, Teri P0323 LeBoldus, Jared M. P0978 Le Bris, Philippe W094 Lecardonnel, Jérôme P0171 Leckie, Brian M. P0859 Le Cunff, Loïc P0880 Ledbetter, Craig A. P0873, P0876, W419 Ledur, Monica Correa P0176, P0418 Lee, Alvin P0079 Lee, Bo Mi P0164 Lee, Byungwook P1137 Lee, Chang-Yong P0484 Lee, Chien-Yueh P1118 Lee, D.K. P0018 Lee, Dooyoung P0127 Lee, Fleet N. W011 Lee, Geung-Joo P0092, P0219, W810 Lee, Gung-Pyo P0938 Lee, Han Yong P0153, P0812 Lee, Hayan W088, W818, W819 Lee, Hyeonjun P1095 Lee, Hyun-Jeong P0299 Lee, HyunJoo P1081 Lee, Hyun Oh P1081 Lee, Insuk P0806 Lee, Jayern P0709 Lee, Je Min P0861 Lee, Jennifer W513 Lee, Jeong-Hee P0164 Lee, Ji-Young W708 Lee, Ji Yeon P0403 Lee, Jiyoon P0196 Lee, Jonghoon P1081 Lee, Ju-Hoon P0450 Lee, Jung-Hun W708 Lee, Jungmin P0923 Lee, Jun Heon P0353, P0373 Lee, Junki P1081 Lee, Lan-Ying P1099 Lee, Michael W146 Lee, Michael A W390 Lee, Myoung Hee P0164 Lee, Rian P0751, P0755, P0757 Lee, Sang-Myoung P0371 Lee, Sanghyeob P0013, P0102 Lee, Scott J W076, W097 Lee, Seunghee W860 Lee, Soonbong P0822, P0823 Lee, Suk-Ha P0709, P0747, P0762 Lee, Sung-Il P0825 Lee, Sung-Jin P0403 Lee, Sung-Jong P0666 Lee, Tae-Ho W810 Lee, Tae-Jin W267, W741 Lee, Tae-Young P0723 Lee, Taein C03, C13, C14, P0888,

P0953, P1153, W571, W874 Lee, Tak P0806 Lee, Vivian P0802 Lee, William P0424, W652 Lee, Young-Sang P0484 Lee, Yunjoo P0494

Lee, Yun Sun P1081 Lee, Yvonne P0258 Leebens-Mack, Jim P1017, P1086, W614, W620

Leeds, Timothy D. P0248, P0252, P0254 Leegood, Richard P0179 Lefaucheur, Louis P0168 Le Gall, Sophie W334 Le Gouis, Jacques C15, P0057, P1128,

W709 Lehnert, Sigrid A. P0430, W149, W152 Lei, Li P0145 Leisner, Courtney P0538 Leisser, Willmar W002 Leitch, Ilia J W426 Lekkala, Saradadevi W103 Lekkala, Sivarama Prasad P0954 Lembke, Carolina G. P0011, W818,

W819 Lemm, Jana P0047 Lemmens, Marc P0130 Lemmon, Zachary P0520, W615 Lenaghan, Scott C. P0014, P0020, P0021, P0199, P1091, P1097

Leng, Yueqiang P0680 Lenk, Ingo P1050, P1054, W427, W433 Lennon, Sarah W842 Lenobel, Rene P0191 Lents, Clay A W827 Lepage, Patricia P0363 Le Paslier, Marie-Christine P1015 Lepelley, Maud W180 Leplat, Florian P0668 Le Provost, Grégoire P0974, P0989, W593, W795

Leroy, Philippe W460 Leroy, Thibault W795 Leslie, Charles W188, W332 Leslie, John F. P0470 Lestari, Puji P0494 Lesur, Isabelle W593, W795 Letellier, Thomas C17, P0654, W421,

W478, W504 Le Thiec, Didier W308 Leung, Hei W521 Leung, Kevin P1165 Lev, Shery W227 Levi, Amnon W229, W230 Lewin, Harris W141 Lewin, Harris A. P0274 Lewinsohn, Efraim W227 Lewis, Christopher P0385 Lewis, David P0972 Lewis, Edwin E. P1020 Lewis, Suzanna C02, P0432, P1154,

W411 Lewsey, Mathew G W358 Lexer, Christian W320, W634, W797 Leyser, Ottoline P0687, W095 Li, An P0319 Li, Changxi P0165 Li, Chao P0240, P0242, P0671, W880 Li, Donghui P1130, W056 Li, Fay-Wei P1082, P1085, P1086

323

Li, Feng P0820, P0821, W099, W100, W105

Li, Feng-Peng P0484, P0510 Li, Gang W127 Li, Guanglin P1009 Li, Haizhen P0943 Li, Heng W238 Li, Hongjie P0208 Li, Hongyao P0525 Li, Huihui P0594, W461 Li, Ji P0936 Li, Jia P0346 Li, Jialian P0362 Li, Jiaming P0908 Li, Jiayang W700 Li, Jin W600 Li, Jingping W583 Li, Jun C16, C20, P0688, P0794 Li, Kun W603 Li, Lei-Ting P0905, P0910 Li, Li P0183, W468 Li, Lingyan P0319 Li, Lydia P0186 Li, Meng P1193 Li, Pingchuan P1039, P1043, W188,

W291 Li, Q. Quinn P0182 Li, Rui W826 Li, Ruiqiang W225 Li, Wenrong P0172 Li, Xiang P0967 Li, Xiangfeng P0274 Li, Xianran P1010, W747 Li, Xiaobo W081 Li, Xiaonan W102 Li, Xiaoping P0570 Li, Xinyun P0369 Li, Xiu-Qing W283, W744 Li, Xuehui W296 Li, Xuesong W078 Li, Yan P0724 Li, Yang P0724 Li, Yanjun P0702 Li, Yinghui P0705, W755 Li, Yun P0242, P0245 Li, Yutao P0430 Li, Zenglu P0730, W776 Li, Zhenni P0535, W262 Li, Zhi-Kang W773, W779 Li, Zhijian T. P0881 Li, Zhikang W777 Liachko, Ivan W144, W200, W440 Liang, Chengzhi P0055 Liang, Haiying P0969, W312, W878 Liang, Xuanqiang P0208, P0742 Liang, Xue P0319 Liang, Yanchun P0060 Liang, Yong W460, W474 Liao, Boshou P0208 Liao, Yu-Chen P0862 Liaubet, Laurence P0168 Libault, Marc P0707, W492 Liberal González, Isabel María P1032 Liberatore, Katie L. P0628, W544

Libershteyn, Vlad P1165 Lichtenzveig, Judith P0468, W210 Lidzbarsky, Gabriel P0636 Liechty, John C19, P0988, W311, W569 Liechty, Zach S. C07, P0963 Lien, Sigbjørn P0244 Lightfoot, David A. P0536, P0711,

P0714, P0720, P0726, P0729, W168 Lillehoj, Hyun S. P0421 Lillis, Jacquelyn P0873, P0889, W419,

W422 Lillis, Jacquelyn Ann P0876 Lim, Sooyeon P0450 Lim, Sung Don P0218 LIM, Sung DON P0150 Lim, Yong Pyo P0826, W102, W466 Lima, Joni E. P0551 Lin, Chung-cheng P0941 Lin, Han P1118 Lin, Jean-yu P0941 Lin, Jer-Young W845 Lin, Jun-Wei P1118 Lin, Li P0142, W005 Lin, Meng-ying P0501 Lin, Yann-rong P0501 Lin, Yao-Cheng P0544 Lin, Zibei W297 Linares, Angela M. W169 Lindblad-Toh, Kerstin P1000, W090 Lindow, Steven E. P1103 Lindquist, Erika A. P0003 Lindquist, Ingrid E. P0170 Lindtke, Dorothea W797 Ling, Kai-Shu P0440, W229 Linz, Luke P0084 Lippman, Zach W615 Liptak, Stephanie P0113 Lipzen, Anna P0570 Lisch, Damon W629 Liston, Aaron P0065, P0775, P0968,

W711 Liu, Bang P0354 LIU, Bin P0319, W275 Liu, Bo P0958 Liu, Cheng P0671, W880 Liu, Chu-Yin P0862 Liu, George P0277, W107, W150 Liu, George E. W141 Liu, Haibo P0347 Liu, Haiping P0125 Liu, Hui P0546, W814, W833 Liu, Jiayin P0341 Liu, Jing P0354 Liu, Jinpeng P0444 Liu, Jinze P0334 Liu, John P0239, P0240, P0242, P0245, W055

Liu, Juge P0724 Liu, Jun P0147 LIU, LI P0865 Liu, Li-yu Daisy P0501 Liu, Lijun W306 Liu, Ling P0524 Liu, Melissa Huang P1182

Liu, Mingjun P0172 Liu, Patrick C25, P1149 Liu, Ping-Li W703 Liu, Rong W703 Liu, Ruyu W109 Liu, Sanzhen P0183 Liu, Sarah W094 Liu, Shikai P0240, P0242, P0245 Liu, Shiming P0710, P0732, P0733 Liu, Shuangshuang P1023 Liu, Shudong P0172 Liu, Shuyang W474 Liu, Shuyu P0625, P0634 Liu, Sixin P0244, P0247, P0252 Liu, Siyao W563 Liu, Tingsong C16, P0794 Liu, Wansheng P0170, P0276, W136 Liu, Wing Yee P0468 Liu, Xiaolei P0362, P0375, P1158, P1193

Liu, Xin P0702, P0783, P1085 Liu, Xu P0842 Liu, Xue W700 Liu, Xuejiao P0936 Liu, Yalin P0525, W585 Liu, Yang P0696 Liu, Yao P0362 Liu, Yi P0811 Liu, Yong-Xin P0525 Liu, Yue P0221, W861 Liu, Yun-Hua P0964, W016, W685, W848

Liu, Yunfeng P0705, W755 Liu, Zhaohui P0679 Liu, Zhilong P0172 Liu, Zhixin P1071 Liu, Zhiyong W460, W474 Liu, Zongrang P0700, W752 Livingstone III, Donald W119 Lloyd, Johnny P1123, W487, W613 Lo, Sassoum P0784, P0785, W767 Loaec, Mikael W478 Loan, Nguyen To W149 Lobaton, Juan David P0761 Lobo, Francisco P. P0008, P0231,

P1021, P1140 Locovare, Heather P0068 Lodes, Michael J. P0033, P0035 Logacheva, Maria D. P1059 Lohmiller, Leslie P0849, W689 Lohmueller, Kirk E. P0388, W636 Lokhande, Hrishikesh C11, P0697 Lomsadze, Alexandre W203, W204 Lonardi, Stefano P0658, P0784, W767 Londo, Jason P0873, P0882, W012,

W419, W422 Long, Anthony D. W637 Long, Hai W474 Long, Stephen P0010, P0026, W084,

W563, W814 Longhi, Sara P0893 Lonsdale, Andrew P1184 Loopstra, Carol P0984, P0987, P0988,

W569

324

Lopes, Francisco Claudio da Conceicao P0550

Lopes, Marcos S. P0366, P0368 Lopes, Marcos Soares P0351 Lopes, Paulo S. P0351, P0366, P0368 Lopes, Uilson Vanderlei P0997, W120 Lopez, Francisco W395 Lopez, John P1109 López, Pedro Figueroa P0594 Lopez-Cruz, Marco W389 Lopez-Valle, Mayra P0222 Lopez Vernaza, Manuel A. P1090 Lor, Vai W246 Loraine, Ann P0922 Lorberg, Sarah P0469 Lorenz, Aaron P0556, P0665, P0708,

W778 Loreto, Francesco W308 Lotterhos, Katie W317, W573 Lou, Ping W101 Lou, Qunfeng P0936 Louis, Alexandra C06, P1006 Lovatt, Alan W430 Lovci, Michael T. C25, P0012, P1149 Loveland, Jane C08, W371, W825 Lovell, John T. W194 Loving, Crystal W832 Low, Eng-Ti L W556 Lowe, Todd M. P0391 Lowry, David P1028 Lowy, Ernesto P0746 Lozito, Maria Luisa P0578 Lu, Fachuang W094 Lu, Fei P0513, W123 Lu, Fu-Hao W030 Lu, Hong P0521 Lu, Huangjun P1064, P1065 Lu, Jerry P1119 Lu, Mengmeng P0984 Lu, Xin P0098 Lu, Yue P0110, P0640 Lubberstedt, Thomas P0477 Luby, Chris D P0305 Luby, James J. P0873, P0887, W335,

W419 Lucas, Mitchell R. P0204, P0784, P0785, P0786, W489, W767

Lucas, Stuart James P0591 Lucretti, Sergio W019, W540 Lucy, Matthew C. W025 Lun, Yanni W032 Lund, Mogens S P0272 Lundquist, Judith P0323 Lundqvist, Udda P0671, W880 Lunney, Joan K. P0225, P0372, P0373, W828

Luo, Chenglong P0406 Luo, Hong W562 Luo, Ming-Cheng P0574, P0590, P0658,

W014, W188, W460, W471, W474 Luo, Song W600 Lupiani, Blanca W847 Lutz, Joseph W538 Luzzatto, Tal W678

Lv, Yuqi P0364 Lv, Zhenling P0525 Lyda, Sydney P0886 Lykkjen, Sigrid P0342 Lynaugh, Hannah J. P0340 Lyons, Eric C22, P0402, W460, W486 Lyons, Leslie A W128 Lyons, Leslie A. P0389, W127, W130 Lyons, Russell W149 Lysak, Martin A. P0814, P0827, P0833, W579

M, Milner Kumar P0954 Ma, Hai-Ling P0152 Ma, Hao P0250, P0251, W052 Ma, Hong W584, W587, W688 Ma, Jian P0274 Ma, Jianxin P0699, P0705, W755 Ma, Li P0273, P1176, W150 Ma, Li-Jun W353, W435 Ma, Shisong W674 Ma, Wei W589 Ma, Xu P0221 Ma, Xue-Feng P0028 Ma, Yu P0744, W208 Ma, Zhengqiang W460, W474 Maass, Erika P1078 Mabiala, André W305 Macaya Sanz, David W634 Maccaferri, Marco P0575, P0604, P0637,

W393 MacCallum, Iain P1000, W090 Macchietto, Marissa P1020 Mace, Emma P0071, P0678, W682 Macedo, Leonardo Lima Pepino P0966 Macfarlane, Andrea W430 Mach, Núria P0363 Machado, Adriane P0052 Machado, Marcos Antonio P0929,

P1103, W161 Macharia, Godwin P0644 Machida, Gregorio P0532 Machita, Kayo P0706 MacHugh, David E. P0324 Macias Gonzalez, Miguel W196 Mack, Savannah P0343 Mackenzie, Sally W490 MacLachlan, P.R. W035 Maclean, Paul W020 MacLeod, James N. P0320, P0324,

P0334, P0444 MacNeil, Michael D. P0293 Madder, Kayla M P0300, P0305 Madoui, Mohammed-Amin W210 Madsen, Ole P0350, P0366, P0368,

W535 Madubanya, Lebogang Angelo P0541 Madzima, Thelma F. W581 Maeda, Andrea BV P0956 Mafi Moghaddam, Samira P0751, P0755,

P0760 Magalhaes, Jurandir W002 Magbanua, Zenaida P0465 Magbanua, Zenaida V. P0462 Magill, Clint W436

Magni, Federica P0587, P0591, W179 Magris, Gabriele W186 Mahama, Anthony Assibi P0482 Mahato, Ajay Kumar P0933 Mahfouz, Magdy W510 Mahoney, Aaron P0461 Maia, Ivan G. P0210, P0808, P0996 Main, Dorrie C03, C13, C14, P0744,

P0763, P0888, P0894, P0953, P0961, P0988, P1153, W162, W209, W322, W326, W335, W569, W571, W872, W873, W874

Maiti, Rama P1109 Maiwashe, Azwihangwisi P0293 Majid, M.A. P0995 Majumdar, Rajtilak P0876, P0889 Makarevitch, Irina P0480, P0481, P0540, W260, W694

Malakar, Ayan P0720 Malchiodi, Francesca P0298 Maldonado, Jonathan P0912 Maldonado dos Santos, Joao V. P0696 Malek, Joel A. W559, W721 Malenica, Ivana P0448 Malig, Maika P0308 Malik, Richard W128 Malik, Sachin P0622 Malitic-Layaoen, Geraldine Ann V. P0489 Mallick, Swapan W238 Malolepszy, Anna P0692, W506 Maloof, Julin N P0817 Maloof, Julin N. W103 Maltais, Véronique P0970 Mamidi, Sujan P0751, P0755 Manahan, Ted W142 Mancini, Melina C. W821 Mandakova, Terezie P0814, P0827, P0833

Mandel, M. Alejandra P1071 Mandrou, Eric W305 Manechini, João R. P0547 Mangenot, Sophie W473 Mangu, Venkata R. P0194, W898 Manns, David P0873, W419 Manohar, Surendra S P0739 Manoharan, Muthusamy P0759, P1073 Manrique Carpintero, Norma C. P0842 Mansanet, Camille W151 Mansfeld, Ben P0937 Mansfield, Anna Katherine P0873 Mansfield, Shawn D. P0027, W307 Mansveld, Sandra W122 Mantovani, Eder Eduardo P0615 Mantovani, Paola P0604 Mantri, Nitin W469 Manunza, Arianna P0360, W442 Manzella, Daniele W395 Mao, Linyong W229 Mao, Long W460, W474 Mao, Yongjiang W109 Mapholi, Ntanganedzeni Olivia P0293 Maranas, Costas D. P0535, W262 Marancik, David P. P0254 Marand, Alexandre P0842

325

Marande, William P0070, P0796 Marchand, Gwenaelle W849 Marchant, Blaine P1082 Marco, Mariotti W201 Marcolino Gomes, Juliana P0203 Marelli, Jean-Philippe W115, W116,

W118 Margarido, Gabriel Rodrigues Alves

W818, W819 Maria, David P1040 Maria, SR P0563 Maricle, Brian P1030, W639 Marino, Celso Luis P0550 Markelz, Cody P0817, W103 Markey, Alysta P0269 Markham, Emily P1181 Markiewicz, Augustyn W504 Marks, M. David P0835 Marley, Kara B. P0264 Marone, Daniela P0585 Marot, Guillemette P0171 Marquand, Elodie P1015 Marques-Bonet, Thomas P0324, W131 Marraccini, Pierre W180 Marroni, Fabio W186 Marsden, Clare W636 Marsden, Clare D. P0388 Martelli, Pier Luigi P0344, W823 Martelli, Pierluigi P0575 Martienssen, Rob W556 Martienssen, Robert W267 Martin, Fergal P1002 Martin, Frank P0460, W436 Martin, Guillaume W714 Martin, Olivier C. P0849, W689 Martínez, Amparo W442 Martinez, Paula P0469 Martinez-Garcia, Pedro J P0987, P0988, W332, W568, W569

Martínez-Gómez, Pedro W326 Martins-Lopes, Paula Filomena P0089 Marubbi, Thea P0433 Mas, Justine P0070 Mascarenhas, Athena D. P0704 Mascher, Martin P0670, W363, W713,

W886, W889 Mashanov, Vladimir W760 Mashingaidze, Kingstone P0537, P0541 Maslov, Sergei P1138 Mason, Andrew S. P0396 Mason, Annaliese S. W796 Mason, John G P0138 Masonbrink, Rick W213 Massaccesi, Luisa P1037 Massey, Laura W230 Massi, Andrea P0575, P0604 Massirer, Katlin B. P0012 Mastrangelo, Anna-Maria P0575, P0585,

P0587 Masuko-Suzuki, Hiromi P0799, P0800,

P0801 Masumba, Esther A. P1070 Matala, Andrew P. W638 Mateescu, Raluca P0297, W145

Mateo de Arias, Mayelyn W190 Mather, Diane P0652 Mathew, Lisa Sara W559, W721 Mathis, Luc W600 Matika, Oswald P0293 Matsaunyane, Lerato Bame Tsalaemang P0848

Matsuda, Tomoki P0800, P0801 Matsumoto, Takashi P0485, P0511 Matsunaga, Hiroshi P0847 Matsunaga, Koji P0229 Matsuno, Kyohei P0491 Matsuoka, Makoto P1122, P1125 Matsushima, Mai P0800, P0801 Matthews, Benjamin F. W602 Matthews, David P0653, W501, W537 Matthews, David E. C09, P0656, W765 Matthews, William Charles P0204 Mattison, Ashley Jean P0560 Matvienko, Marta P0034, P0222, P0956 Maughan, Jeff P1044, W539 Mauleon, Ramil P. P0489 Max-Aguilar, Adriana P0259 Maximova, Siela W117 May, Bernie P. P0249 May, Catherine P0445 May, Sean Tobias W057 Mayer, Danielle P0901 Mayer, Klaus F. X. P0130, P0576,

P0631, W030, W432, W460, W559 Mayes, Mary Sue P0269 Mazourek, Michael P0744, P0745, W208 Mazza, Raffaele W106 Mazzoni, Gianluca P0344, W823 Mbenoun, Michael P0458 McAssey, Edward V. P0952 McAuslane, Heather P1065 McCabe, Chantal E. P0731 McCallum, Emily J W122 McCarthy, Fiona P0116, P0402, W480 McCarthy, Fionna W646 McCartney, Curt A. P0618, W538 McClean, Phillip P0751, P0755, P0757,

P0760 McClung, C. Robertson W101 McCombie, W. Richard W088, W460 McCormick, Ryan F P0559 McCouch, Susan P0489, P0490, P1187,

W010, W764 McCourt, Peter P0773 McCoy, AM P0342 McCue, Kent F. W063 McCue, ME P0318, P0321, P0332,

P0335, P0336, P0342 McCuiston, Jamie P1093, W625 McDaneld, Tara G. W139 McDaniel, Stuart W530, W619 McDowell, John W674 McEwan, John W020, W135, W146,

W390 McFerson, Jim W335 McGee, Rebecca P0744, P0763, W208,

W209 McGill, Jodi L. P0119

McGinnis, Karen M. W581 McGrath, J. Mitchell W808 McGuire, Pat W188, W460 McHale, Leah P1011, W380, W403 McHoull, Barry P1182 McIntosh, Robert A. P0648 McIntyre, Lauren M. P0538, W800 McKay, John P0798 McKay, John K. W194 McKay, Stephanie P0296, W147 McKinnon, John J P0305 McLaren, Graham W503, W761 McLysaght, Aoife W576 McNally, Kenneth L. W699 McNeece, Brant T. P0691 McNellis, Timothy P0898 McQuistan, Adam P0266 McWilliam, Sean W149 Mdladla, Khanyisile P0384, W443 Mead, David P0033, P0035, P0071 Meadows, Jennifer W134 Mebalo, Joyce P0643 Medina, Tatiana Boluarte P0846 Medina-Espinoza, Jesus A. P0259 Medrano, Juan F. P0310 Meerow, Alan W. W558 Meeta, Madhu W603 Meghen, Ciaran P0111 Megias, Manuel P0233, W041 Megraw, Molly W401, W840 Meheust, Raphael P0796 Mehra, Surbhi P0683 Mehrotra, Sudeep P1183 Mehtre, Shivaji P0557 Meier, Cecile W634 Meinhardt, Clinton W706 Meinhardt, Lyndel W114, W115 Meinke, David P1123, W487, W613 Meisel, Barbara P0532 Meisel, Lee W326 Mejía, Nilo P0874 Meksem, Khalid P0710, P0711, P0714,

P0732, P0733, W509 Melka, Hailu Dadi P0295 Melloni, Maria N.G. P0547 Melnick, Rachel W114 Memili, Erdogan W022 Menda, Naama P1123, P1160, W487,

W613, W724 Mendioro, Merlyn S. P0509 Mendoza, Kristelle M. P0405 Meng, Yan P0192 Mentaberry, Alejandro P0746 Menzel, Gerhard W071 Mercado, Noe B. P0159 Merceron, Guillaume C15, P1128, W421,

W504 Merchant, Nirav C22, P0696 Merchuk, Lianne P0636 Mercière, Maxime W557 Mergoum, Mohamed P0615 Merot l'Anthoene, Virginie W180 Merriwether, Andrew P0315 Mertz Henning, Liliane M. P0203

326

Mesnard, François P1042, W293 Messing, Joachim W185 Metz, Richard P P0040 Meuwissen, Theodorus M. W042 Meyer, Rick P0734 Meyer, Susan E. P0455 Meyers, Blake C. P0707 Meza, Leticia P0613 Mezey, Jason P1187, W010 Mezzullo, Marco P0344, W823 Mhiret,, Worku Negash W295 Miao, Jiamin P0212 Micali, Sabrina W326 Michael, Todd P. P0519 Michal, Jennifer W826 Michaud, Réal W296 Micheli, Fabienne P0997, W120 Michelmore, Richard P0460, P0472,

P1011, P1013, P1062, W196, W380, W436, W866

Michelotti, Vania P0587 Michno, Jean-Michel P0722, W621 Michot, Pauline P0304 Michotey, Célia C15, P1128, W421,

W504 Mickelson, JR P0318, P0321, P0332,

P0335, P0336, P0337, P0342 Micklem, Gos C23, P0790, P0792, W059 Micklos, Dave W258, W693 Miclaus, Mihai P0526 Midorikawa, Takafumi W603 Miglior, Filippo P0283, P0298 Mihelich, Nicole T. P0158 Mikel, Mark A. P0031, W184 Miklas, Phillip P0751 Milanesi, Marco W109 Milano, Elizabeth R. P1028 Milc, Justyna P0674 Miller, Allison W420 Miller, Donald P0319, P0323, P0340 Miller, Jason R. C23, P0765, P0771,

P0790, P0792, W059, W061, W410, W876

Miller, Marcia M. P0413, W662 Miller, Marisa Elena P0628, W544 Miller, Melanie M. P0454 Miller, Michael P0244 Miller, Phillip S. P0367 Miller, Robert N. G. P0945 Miller, Tamara Iva P0748, W219 Milner, Sara G P0575, P0604, P0657,

W508, W705 Min, Sun-Kyung P0484 Minamikawa, Mai P0847 Ming, Ray W180, W822 Ming, Yao W491 Minnaar-Ontong, Adré P0646 Minniefield, Bre P1003 Minoche, Andre E. P0746 Miquel, Martine P0535, W262 Mir, Héctor Eduardo Villaseñor P0594 Mireau, Hakim P0663, W882 Mirebrahim, Hamid P0658, P0784, W767 Mishima, Kentaro P0229

Mishina, Kohei P0671, W880 Mississo, Essivi W112 Mistry, Divya W607 Misztal, Ignacy W650 Mitani, Nobuhito P0878 Mitchell, Rob P0016 Mitchell, Sharon E. P0873, P0882,

W012, W747 Mittal, Shipra P0774 Miyao, Akio P1148 Miyatake, Koji P0847 Mizrachi, Eshchar P0973 Mizrachi, Ilene C21, P1112, P1120, W512

Mochida, Keiichi P0154, P0685 Mochizuki, Takako C30, P1131 Mock, Steve C23, P0790, P0792, W059 Mockaitis, Keithanne P0988, P1151,

W569 Mockler, Todd P0686, W096 Mockler, Todd C. P0519, P0923, W099,

W101 Moen, Thomas P0244 Moglia, Elia P0014 Mohamad, Arif P0005 Mohammadi, Mohsen P1004 Mohamoud, Yasmin A. W559, W721 Mohan, Amita P0610 Mohd Din, A.S. P0005 Mohebbi, Mohammad P0976, W303 Mohellibi, Nacer C15, P1128, W421 Moine, Deborah W180 Moioli, Bianca W109 Moir, Richard P1145, P1171 Mok, Young Geun P0196 Mokhber, Mahdi W109 Molina, Antonio W442 Molnár, István P0582, P0586 Molnar-Lang, Marta P0582, P0586, W361

Monaco, Marcela Karey P1119 Moncada, Pilar W178 Monfort, Amparo P0918 Monsma, Scott P0033, P0035, P0071 Monson, Melissa S. P0405 Montague, Michael J W127 Monteiro-Vitorello, Claudia B. P0466 Monteros, Maria J. P0767 Montes, Christopher P0517, P0538 Montes, Christopher M. P0727 Montesinos-Lopez, Osval A. W389 Moore, A. P0335, P0336 Moore, Gary P1118 Moore, Graham P0683 Moore, Laura P1123, W487, W613 Moore, Stephen W149 Moose, Stephen P. W075, W084, W338 Moraes, Fabrício E. P0112, W837 Moraga, Carol P1029 Moraga, Roger P0776, P0779 Morales, Melvin P. W155 Morales-Cruz, Abraham W418 Moran, John V. W131 Moran, Paloma P0233, W041

Morandini, Piero P0014 Moran Lauter, Adrienne N. P0721 Morcia, Caterina P0674 Moreira, Luis P0089 Moreira, Walter C23, P0790, P0792,

W059 Moreira Alves, Gustavo W796 Moreland, Chris P0083 Moreno, Carole R. P0377, P0379, W452 Moreno, Javier Ireta P0594 Moreno, Marcia P0550 Mores, Nelson P0358 Moretzsohn, Marcio de Carvalho P0741 Morgan, Ed P0972 Morgan, Theodore P1030, W639 Morgante, Carolina P0743 Morgante, Michele P0001, P0575,

P0587, W179, W186, W308, W316, W326

Mori, Satomi P0706 Morimoto, Kyoko P0852, P1125 Morishige, Daryl P0559, W174 Mormede, Pierre P0361 Moroldo, Marco P0171 Morrell, Peter L. P0669, P1004 Morris, Adam P0436 Morris, Chris A. W148 Morris, Geoffrey P0023, P0552, P0554,

P0563, W749 Morris, J. Bradly P1080 Morrison, Neil P0433 Morrissey, Rhiannon P0113 Morse, Alison P0538 Mortazavi, Ali P1020 Moscou, Matthew J. W099 Moser, Michel P0868 Moses, Daniela P0969 Moska, Magdalena P1026 Moskvin, Oleg V. P0027 Moss, Dustin P0258 Moss, Shaun P0258 Moss, Steven P0113 Mostafa Emam, Ahmed P0442 Motamayor Arias, Juan Carlos W116,

W118, W119 Motawei, Mohamed P0627 Motes, Christy P0767 Mott, Richard P0145 Mottiar, Yaseen P0027 Mouille, Grégory P0535, W262 Mourão, Gerson B. P0290 Mousel, Michelle P0381 Moussa, Ihab Mohamed P0453, P0471 Moustafa, Khaled A. P0627, P0632 Movassat, Maliheh W791 Mower, Jeffrey P. W543 Moya, Ernesto Solís P0594 Moya-León, Maria A. P0993, W325 Moyers, Brook P0950 Mraz, Amy P0030 Msoffe, Peter W770 Muchadeyi, Farai C. P0384, W443 Muchadeyi, Farai Catherine P0292 Muchero, Wellington P0217, W783

327

Mudadu, Mauricio A. P0290 Mudge, Joann P0170, P0533, P0534,

P0736, P0765, P0767, P0770, P0771 Muehlbauer, Gary J. P0658, P0661,

P0672, P0717, P1004, W713 Muela, Víctor Manuel Hernández P0594 Mueller, Hans-Georg W460 Mueller, Laurence D. W637 Mueller, Lukas P0129, P1160, W162,

W180, W722, W723, W724 Mueller, Ulrich W098 Mueth, Nicholas Arthur P0461 Muffato, Matthieu C06, P1006 Mugo, Stephen P0532 Muhairwa, Amandus W770 Muhantay, Gemenggul P0319 Muhire, Gervais P0165 Muir, William P0689, P1180, W669 Mujahid, Nisma P0343 Mukherjee, Meenakshi P0387 Mukherjee, Shreyartha P0137, P1048 Mullaart, Erik P0286 Mullen, Jack L. P0798 Mullen, Robert W086 Müller, Andreas W804 Muller, Emmanuelle W112 Muller, Robert P1130, W056 Mullet, John P0559, P0560, W174, W682 Mullins, Ewen P1090, W463 Mulvane, Joseph P1119 Mummenhoff, Klaus P0797 Mun, Myeong-il P0829 Mun, Terry P0692, W506 Munafo, Daniela B P0050 Munghate, Rajendra P0562 Munhoz, Carla de Freitas P0074 Muniswamy, S P0788 Munoz, Patricio R. P0095, P0925, P0985 Muñoz-Amatriain, Maria P0204, P0658,

P0784, W767 Muñoz-Mejías, Eva W442 Munoz-Torres, Monica C. C02, P0432,

P1154, W411 Munyaneza, Joseph E. W063 Munz, Jack W083 Mur, Luis P1023 Murad, Rabi P0483 Murali, Shwetha C. W068, W139, W453,

W861 Muranaka, Toshiya W734 Murat, Florent P0584, W795 Murata, Kazumasa P0495 Murata, Mayara Mari P0931 Muren, Eva P1000 Murphy, Daniel N. P1002 Murphy, Rebecca W174 Murphy, Terence C04, C21, P1120,

P1142 Murphy, Terence D. P0791, P1105,

P1115, W273, W515 Murphy, William J. W127, W129 Murray, Armond P0574, W474 Murray, Kevin D. P1023 Murray, Seth W685

Mutka, Andrew P0093 Mutryn, Marie P0424, W652 Mutschler, Martha A. P0859 Mutton, Miguel Angelo P0184 Muylle, Hilde W431, W564 Muzny, Donna M. P0073, W068, W139,

W360, W453, W861 Mwacharo, Joram W026 Myburg, Zander P0973 Myer, Phillip W288 Myers, Jim P0745, P0751 Myers, Matt P0552 Myka, Jennifer P0323 Mysore, Kirankumar S. P0137, P0774,

P1099 N'Diaye, Amidou P0575, P0593, P0617,

W035 Naazie, Augustine W770 Nabemoto, Moe P0799, P0800, P0801 Nadon, Brian P0699 Naegele, Rachel P0842 Nag, Rishi P1002 Nagabhyru, Padmaja P0193 Nagahora, Mika P0491 Nagai, Chifumi W119, W822 Nagano, Atsushi J. P1166 Nagappan, Jayanthi P0464, W556 Nagarajan, Ragupathi P0610 Nagasaki, Hideki C30, P1131, P1136 Nageswara-Rao, Madhugiri P0764,

P0775, W851 Nagy, Istvan W432 Nagy, Mate P0060 Nah, Gyoungju P0723, P1068, W895 Naik, B Jayanna P0568, P1079 Naithani, Sushma P0872, W417, W838 Naito, Ken P0749 Naito, Yuki C12 Najar, Fares Z. P0965 Nakamura, Kyoko W558 Nakamura, Yasukazu C30, P1121,

P1131, W163 Nakamura, Yukino P1141 Nakashima, Jin P0774 Nakaya, Akihiro P1121 Nakayama, Thiago J. P0203 Nakazato, Takeru C12 Nakazono, Mikio P0800 Nam, Bora P0339 Nambara, Eiji P1161, W596 Nambisan, Suran R P1047 Nanasato, Yoshihiko P0939 Nandety, Aruna W078 Nanduri, Bindu P0167, P0343 Nanjappa, Gnanesh W538 Nanni, Laura P0753 Naoumkina, Marina P0960, P0962 Narayan, Jitendra P0274 Narum, Shawn P0081, P0260, W638 Nascimento, Eliza P0741 Nascimento, Leandro Costa P0543 Naumann, Julia P1078 Navarini, Luciano W179 Navarrete-Estrada, Georgina W493

Nave, Moran P0572 Nawrath, Christiane P0671, W880 Nayak, Spurthi P0209 Nayak, Spurthi N. P0208, W811 Nayidu, Naghabushana K. P0143 Nazzicari, Nelson W296 Ndeve, Arsenio Daniel P0204, P0784,

P0785, P0787, W767 Neale, David C03, C19, P0987, P0988,

P1153, W311, W332, W568, W569, W571

Neary, Joe M. P0169, P0310 Negoro, Satomi P0847 Negri, Barbara W002 Neibergs, Holly L. P0312 Neinhuis, Christoph P1078 Nelson, Andrew D W486 Nelson, C. Dana P0995 Nelson, Matthew N. P0777, W491, W796 Nelson, Randy P0705, P0727, W706,

W755 Nelson, Rex P0735, P1123, W610,

W613 Nelson, Rex T. P0695, W487 Nelson, Susan M. W190 Nemeth, Csilla P0684 Nepomuceno, Alexandre P0203 Nesi, Nathalie W265 Nettleton, Dan P0183, P0192, P0522,

W025, W607 Neuffer, Barbara W894 Neugebauer, Kerri P0189, W352 Neupane, Anjan P0474 Neves, Leandro Gomide P0979 Newcomb, Richard D. W331 Newman, Sheryl-Anne N W390 Newton, Linsey P0842 Ngo, Hanh P0972 Ngo, Thanh C. W474 Nguyen, Hanh P0705, W623, W755 Nguyen, Henry T. P0060, P0694, P0696,

P0702, W001, W706 Nguyen, Nhung T P0407 Nguyen, Thi Thuy Nga C06, P1006 Nguyen, Thuy N P0950 Nhlapo, Thulile F. P0063 Nice, Liana P0672 Nichols, Krista M. P0256 Nichols, Richard A P0819 Nicholson, Paul P0027 Nicolas, Alain P0088 Nicolas, Stephane C15, P1128 Nicolazzi, Ezequiel Luis W108, W109,

W137, W441 Niebauer, Megan P0033, P0035 Nielsen, Kare Lehmann P1185 Nielsen, Rasmus P0323, P0324, W398 Nierop, Klaas G.J. P1084 Nieu, Rita P1016 Nigam, Shyam N P0739 Niknam, Vahid P0115 Nikoh, Naruo C30, P1131 Nikolau, Basil P0134 Nikoloski, Zoran P0753, P0855

328

Nikoumanesh, Kianoush P0807 Nilausen, Chelsea P0970 Nilsen, Kirby W035 Nimmakayala, Padma W228, W229 Ning, Li P0406 Ning, Yuese W606 Niraula, Prakash P0691 Nirmal, Ravi Chandrabhan P0609 Nishimura, Minoru P0706 Nishio, Takeshi P0820, W100 Nishiyama, Tomoaki P1089, W527 Nissila, Eero P0489, W500 Niu, Baixiao W584 Niu, Lizhu P0375 Niu, Pengxia P0371 Nizampatnam, Narasimha R P0718,

W626 Nobile, Paula M. P0180 Noblick, Larry W558 Noce, Antonia W442 Noirot, Céline W593 Noli, Enrico P0575 Nolte, Arne P0447 Nonaka, Keisuke W163 Nonneman, Dan P0370, W827 Nookiah, Rajanaidu W556 Norelli, John L. P0875, P0897, W335,

W592 Norton, E.M. P0336 Nosaki, Denise P0458 Notredame, Cedric P0746, P0750 Nou, Illsup P0151, P0829 Nouroz, Faisal W071 Novelli, Valdenice Moreira P0929, W161 Nsabiyera, Vallence P0639 Ntshakaza, Pamella P0649 Nuessly, Gregg P1065 Null, Daniel J. P0273 Nunes, Alessandra Vasconcellos P0808 Nunome, Tsukasa P0847 Nuraliev, Maxim S. P1059 Nurkowski, Kristin W317, W573 Nusbaum, Chad W090 Nussbaumer, Thomas P0130, P0660 Nuzhdin, Sergey V P0780 Nuzhdin, Sergey V. W394 Nwosu, Chigozie V. W116 Nyachiro, Joseph P0600 Nyaku, Seloame T. P0965 O'Connell, Jeffrey R. P0273 O'Connor, Devin P0687, W095 O'Donovan, Claire P1108, W373 O'Geen, Henriette W851 O'Neill, Rachel W808 Oard, James P0512 Oatway, Lori P0600 Oberlander, Kenneth P0065 Obermoeller, Dawn P0436 Ocampo, Fabiola P0210 Ocarez, Nallatt P0874 Ocheya, Silvano P0625, P0634 Ochiai, Takayuki P0497 Oddy, V. Hutton W135 Oellrich, Anika P1123, W487, W613

Oettler, Jan W524 Ogiso-Tanaka, Eri P0749 Oh, Chang Sik P0861 Oh, Sewon P0103, P0904, P0906,

P0907 Oh, Youngjae P0103, P0904, P0906,

P0907 Ohlrogge, John W082 Ohlson, Breck P1165 Ohta, Tazro C12 Ohtaka, Kinuka W526 Ohyama, Akio P0847 Ohyama, Kiyoshi W734 Ohyanagi, Hajime P0492, P0852, P1122,

P1125, P1161, P1166 Oikeh, Sylvester P0532 Ojha, Sohita P0404, W672 Okada, Miki W851 Okamuro, Diane Jofuku W233 Okamuro, Jack K. P0682, W536 Okano, Katsunori P0713 Okazaki, Kazuyuki W805 Okono, Fred W761 Okubara, Patricia P0461 Olalere, MO P0563 Olatoye, Olalere Marcus P0554 Oldroyd, Giles G006 Oliker, Leonid W713 Oliphant, Tebogo P0646 Oliveira, Karine M. P0550 Oliveira, Priscila S.N. P0290 Oliveira Veras, Adonney A. P0459 Oliver, Rebekah W538 Oliver, Richard P. P0652 Ollhoff, Alexandrea P0655 Olmstead, James P0925 Olmstead, Mercy C13, P0888, W162,

W335 Olohan, Lisa P0479, W268 Olsen, Christian P1145, P1171 Olsen, Michael S. P0532 Olsen, Odd-Arne P0631 Olson, Andrew P1119 Omari, Khaled P0772 Omoteno, Motoyasu P0495 Omrak, Ayca W238 Onda, Yoshihiko P0154, P0685 Ono, Eiichiro P1041 Ono, Hiromasa C12 Onogi, Akio P0847 Oo, Win Htet P0484 Ooi, Leslie Cheng-Li W556 Oono, Youko P0511, P0612 Ooshima, Sayaka P0860 Opitz, Lennart P1167 Oppert, Brenda P0181 Orabi, Jihad P0659 Oraguzie, Nnadozie C13, P0888 Orbovic, Vladimir P0930 Orchard, Caleb P0851 Orchard, Sandra W368, W374 Ordway, Jared W556 Orellana, Ariel W326

Orendovici-Best, Teodora P0969, W304, W312

Orlando, Ludovic P0318, P0320, P0323, P0324, W237

Oropeza-Aburto, Araceli P0216 Orrù, Luigi P0587 Orsi, Ricardo O. P0177, P0439 Ort, Don P0010, W084, W814 Ortiz-Barrientos, Daniel W633 Ortiz-Monasterio, Ivan P0594 Osaka, Masaaki P0800 Osborne, Colin P. P0179 Osborne, Edward J. P0145 Osborne, Ruth P0613 Osbourn, Anne W520 Osei-Amponsah, Richard P0359 Osier, Michael V. P0889 Osipowski, Paweł P0032, P0476 Osman, Kim P0795 Osorio, Sonia P0919 Osorno, Juan P0752, P0760, W221 Ostevik, Kate W633 Otani, Masato P1161 Othman, Abrizah P0005 Ott, Alina P0522 Ouadi, Sonia P0870 Ougham, Helen W842 Ounit, Rachid P0658 Ouyang, Shuhong W460, W474 Ouzunova, Milena P0553 Oveido, Oliver P0533 Overholt, William A. W640 Owens, Chris P0884 Owens, Gregory L. P0950, P0951 Ownley, Bonnie W547 Owusu, Sandra P0969 Ozaki, Soichi P0852, P1125 Ozias-Akins, Peggy P0208 Özkan Ünal, Emel W109 Ozyigit, Ibrahim Ilker P1005 P. VanTassell, Curtis P0277, W106,

W108, W137, W141, W144, W150, W440

Pacheco Cruz, Igor P0916 Padilha, Joseane P0136 Padmakshan, Dharshana W094 Page, David C P0322 Page, Justin T. C07, P1044, W214 Pagotto, Uberto P0344, W823 Paiva, Jorge A P P0974 Paiva, Samuel W142 Paiva, Samuel Rezende P0231, P0289 Pál-Gábor, Henrietta P1029 Palhares, Alessandra P0466 Palkopoulou, Eleftheria W238 Pallara, Patrizia W019 Palle, Sreenath R. P0984 Palmer, Mitchell V. P0119 Palti, Yniv P0244, P0247, P0252, W053 Pan, Yong-Bao P0098 Pandey, Manish K P0208, P0739, P0742 Pandolfi, Jose Rodrigo P0176 Pandya, Ravi W818, W819 Paneru, Bam D P0248, P0253, W047

329

Pang, Edwin W469 Pang, Junling P0525, W585 Pang, Wenxing W102 Pang, Xin P0936 Panitz, Frank P0285 Pant, Shankar R. P0691 Panter, Stephen P0138 Papa, Roberto P0753, W247 Papadimitriou, Stavros P0578 Pappas, Gerogios P0746 Paradis, Francois P0165 Paraiso, Francine C18, W033 Parameswari, B. W815 Parco, Arnold P0488 Pareek, Chandra S. P0303 Paria, Nandina P0322 Parich, Alexandra P0130 Parida, Laxmi W357, W434 Paris, Margot W634, W797 Park, Boyeong P0421 Park, Carissa P1157 Park, Chan Ho W606 Park, Cheol Soon P0484 Park, Eun-Jeong P1087 Park, Hyesun P0299 Park, Hyun-Seung P1081 Park, Hyunwoo W623 Park, Jee Young P1081 Park, Jeong Mee P0828 Park, Ji-Min P0977 Park, Jong-In P0151 Park, Jong-Won W812 Park, Kwang-Wook P0349 Park, Kyong-Cheul P0825 Park, Minkyu W426 Park, Robert P0642, P0678 Park, Seongjin P1110, P1137 Park, So-Yon P1099 Park, Soon Ju W615 Park, Suhyoung P0826, W708 Park, Sunjung W086 Park, Yong-Jin P0484, P0510 Parliament, Kelly P0523 Parnpai, Rangsun W109 Parra, Lorena W380 Parsons, Jim W050 Parsons, Joshua P1077 Parthasarathy, Sai P0523 Parupalli, Swathi P0788 Pasam, Raj K. W881 Pasan, Fernando P0834 Paschoal, Alexandre W180 Pasquariello, Marianna P0674 Pastina, Maria Marta W002 Patel, Anand W507 Patel, Dhwani Apurva P0469 Pater, Dianne P0798 Paterson, Andrew H. P0558, W280,

W583, W748, W810, W865 Pathak, Bhuvan P0546, W814, W833 Patil, Sangitaq P1165 Patil, Suyash P0788 Patocchi, Andrea P0900, P1104 Pattathil, Sivakumar W076

Patterson, David J. W154 Patterson, Thomas P0523 Paul, Rachel E P0569 Paul, Rachel E. P0518 Paul, Robin P0988, W569 Paulitz, Timothy P0461 Paulo, Joao P0001, W308, W316 Pauluzzi, Germain W356 Pauluzzi, Germain C W007 Pautler, Michael P0890 Paux, Etienne P0597, W031, W379,

W473, W478 Pavy, Nathalie W319 Pawelkowicz, Magdalena P0032, P0476 Pawlowski, Wojtek P0534 Payne, Adrienne P0001, W316 Payne, Thomas P0594, P0596 Pazhamala, Lekha T. P0209, P0211,

P0788 Pazos-Navarro, Maria P0777 Peace, Cameron C13, P0888, P0894,

W335 Pearce, Stephen W183 Pearman, Peter P. W797 Pearson, Les P0986 Pecchioni, Nicola P0674 Pechtl, Isabell P1182 Pedas, Pai P0668 Pedersen, Jeffrey P0016 Pederson, Gary A. P1080, W747 Peditto, David P0648 Peever, Tobin P0457, W207 Pegg, Timothy P0504 Peitsch, Manuel C P0870 Peixoto, Jane de Oliveira P0176, P0418 Peixoto Junior, Rafael Favero P0180 Pelàez, Pablo W493 Pellegrineschi, Alessandro P0550 Pellegrini, Matteo W577 Pellegrino, Gloria W179 Pelletier, Gervais P0975 Pelletier, Julie W845 Pellino, Marco W189 Peluso, Paul P0068, P0097 Pembleton, Luke P0107, W297 Pena, Roberto J. P0594, P0599 Pendarvis, Ken P0116, W646 Peng, Jia-Shi P0152 Peng, Junhua P0026, W563 Peng, Ting P0125 Peng, Yanhui P0199, W851 Peng, Ze P0740 Penha, Helen Alves P0074 Penin, Aleksey A. P1059 Penmetsa, R. Varma W211, W394 Penmetsa, R Varma P0780, W209 Pepper, Alan E. W640 Pera, Susana P0974 Peraldi, Antoine P0027 Percy, Richard G. C14, P0953, P0961 Père, Marie-Christine P0168 Perea de La Torre, Claudia Samantha

C24 Pereira, Anirene G.T. P0301

Pereira, Bruna F.T. P0547 Pereira, Luiz F. P. P0213 Pereira, Maria Leonor P0089 Pereira, Willian Eduardo Lino P1103 Peretti, Vincenzo W110 Perez-Elizalde, Sergio W389 Perez-Enciso, Miguel W156 Perez-Enriquez, Ricardo P0259 Perez-Rodriguez, Paulino W389 Pérez de León, Adalberto A. P0307 Perez Enciso, Miguel W533 Perkin, Lindsey P0181 Perkins, Andy P0343 Perochon, Alexandre P0185, W463 Peron, Gustavo de Carvalho P0931 Perrotte, J. W324 Perry, Daniel P0666 Perry, Emily C05, P1144, W369 Perry, Nigel P0972 Perseguini, Juliana Morini Kupper

Cardoso P0758 Persia, Michael P0394, P0400, P0426 Persia, Michael E. P0121, P0395,

P0399, P0401, W028 Pertea, Geo P0577, W460, W474 Perumal, R P0563 Perumal, Sampath P1081 Perumbakkam, Sudeep W644 Peternelli, Luiz A. P0105 Peters, Leila P. P0466 Peters, Sander A. P0042, P0871 Petersen, Bent P0323, P0324 Petersen, Jessica L. P0321, P0330 Petersen, Lillian P0323 Peterson, Brenda P0845 Peterson, Daniel G. P0462, P0465,

W280 Peterson, Mary P0923 Petit, Aurélie W324 Petit, Morgane L. P0379 Petrie, James W087 Petrik, Deborah W094 Petroli, Cesar Daniel P0514 Petrovska, Beata P0191 Petryszak, Robert W416 Pfannebecker, Kai C. W616 Pfeifer, Matthias P0576, P0631, W030,

W432 Pfender, William F. W099 Pham, Anh P0730, W776 Pham, Gina P0842 Phan, Huyen TT P0652 Phan, Lon P1109 Phelan, Vanessa W678 Philippe, Florian P1111 Philippe, Romain W473 Phillippy, Adam W144, W440 Phillippy, Adam M W089 Phillips, Jean W761 Phillips, Jeremy L. P1124, P1126, W409 Phillips, Mark A W637 Phillips, Wilberth W114, W115 Phipps, Tenisha P1093, W625 Phuke, Rahul M. P0567

330

Phutane, Megha P0027 Piaskowski, Julia W162 Piekarski, Alissa P0173 Pierce, Brian P1129 Pierce, Tessa P1159 Piercy, R.J. P0335, P0336 Pietrella, Marco W019, W180 Pigna, Gaia P0014 Piles, Miriam P0443 Pillet, Jeremy P0214, W323, W359 Pin, Didier P0304 Pin, Pierre P0663, W882 Pinard-van der Laan, Marie-Hélène

P0423 Ping, Jieqing P0705, W755 Pinhasi, Ron P0475 Pinheiro, Kenny C P0459 Pinheiro Martinelli, Adriana P0966 Pinnow, David P1080 Pinosio, Sara W186 Pinto, Luciana R. P0547 Pinzon-Latorre, David W290 Pipia, Ia Z. P0879 Pirani, Ali P0265, P1165 Pires, J. Chris W632 Pires, Jose Luis P0997, W120 Pirintsos, Stergios Arg. P0154 Pirona, Raul W326 Pissaroglo, Mellissa P0752, W221 Pissetti, Caroline P0358 Pixley, Kevin P0594 Plader, Wojciech P0032, P0476 Plastow, Graham S P0345, P0374, W828 Platt, Roy N. W279 Platts, Adrian W894 Platz, Gregory J P0678 Pliego, Clara W607 Plieske, Joerg P0047 Plomion, Christophe P0989, P0990,

P0992, W305, W593, W795 Plotto, Anne P0215 Plowiec, Arkadiusz P0428 Poblete, Gisselle P0912 Poelchau, Monica P0432, P1118, W411 Poets, Ana M. P0669 Poinar, Hendrik W238 Pokorn, Tine P1067 Poland, Jesse P0592, P0599, P0647,

P1030, W362, W538, W639, W713 Polevikov, Antonina P0447 Polkinghorne, Adam W635 Pollastri, Susanna W308 Polle, Andrea W308 Polley, Andreas P0047 Pollott, Geoff E P0338 Polowick, Patricia L. P0581 Pommier, Cyril C15, C17, P0654, P1128,

W421, W504 Ponce De Leon, F. Abel W150 Poncet, Valerie W180 Ponniah, Sathish Kumar P1073 Pons, Agueda W442 Pont, Caroline P0584 Porch, Timothy P0745, W169

Porembski, Stefan P0998 Porter, Sandra P1147 Portis, Ezio P1135 Portis, Flavio P1135 Portnoy, David S. P1033 Portnoy, Vitaly W227 Portoneto, Laercio P0306, W152 Porto Neto, Laercio R. W155 Portugal, Arllet W761 Portwood, John C10 Posada, Huver W178 Posbergh, Christian J P0338 Postlethwait, John H. W525 Potier, A. W324 Potier, Bernard W714 Pouch, Milan P0833 Pound, Michael P. P0057, W709 Pourkheirandish, Mohammad P0660,

P0671, W880 Poux, Celine P0796 Powell, Charles A. P0434 Powell, Ellis J. W832 Powell, Wayne W395, W430 Powers, Carol P0624 Powers, Stephen W808 Pozniak, Curtis P0575, P0588, P0620 Pozniak, Curtis J P0580, P0593, P0617,

W035 Prakapenka, Dzianis P1176 Prakash, Jai P0933 Prasanna, Boddupalli M. P0532 Prat, Elisa P0070, P0796 Prather, Randall S W830 Prazzoli, MariaLucia P0587 Preece, Justin W415 Premaraj, Shyamaly P0374 Presting, Gernot W582 Price, Jonathan P0479, W268 Prieto, Pilar P0667 Prieto Barja, Pablo P0746, P0750 Prince, Silvas J. P0702 Prinsen, Raphaelle T.M.M. P0287,

P0288 Project Research Team, the Bovine

Respiratory Disease Complex Coordinated Agricultural P0312

Protasio Pereira, Luiz-Filipe W180 Pruitt, Kim D. C04, C21, P0791, P1105,

P1115, P1120, P1142, W106, W273, W515

Pryer, Kathleen M. P1082, P1085 Przybecki, Zbigniew P0032, P0476 Puchalski, Brent P0467 Puchalski, Byron P0467 Puchta, Holger W599 Puiu, Daniela P0577, P0988, W332,

W460, W474, W568, W569 Pujar, Anuradha P1123, W487, W613 Pujar, Shashikant P1115, W273 Puli, Chandra Obul Reddy P0568, P1079 Pumphrey, Michael P0629, P0637, W393 Punna, Ramu P0562, P0566, P0782, W123

Purcell, Catherine P0232, P0236, W051

Purcell, Larry C P0716 Purchase, Candice W721 Purdy, Sarah W077 Puritz, Jonathan B. P1025, P1033 Puryear, Jeffrey P0987 Puzey, Joshua W523 Qaadri, Kashef P1145, P1171 Qi, Aiming W808 Qi, Aladaer P0319 Qi, Shan W607 Qian, Qian W700 Qiao, Mengmeng P0125 Qiao, Xin P0905, P0910 Qin, Xiang W139, W453, W861 Qiu, Dan P0702 Qiu, Jin-Long W517 Qiu, Lijuan P0705, W755 Qiu, Mengjie P0319 Qiu, Zhongwei P0319 Qu, Hao P0406 Qu, Lujiang P0417 Quandt, Dietmar W618 Quero-Garcia, José W334 Quesneville, Hadi C17, P0654, W421,

W478, W504, W795 Quintanilla, Raquel P0356, P0360 Quintero, Juan Camilo C24 Quinton-Tulloch, Mark P0479, W268 Qureshi, Naeela P0641 Ra, Won-Hee P0484, P0510 Raanin, Keerthivasan Chandradoss

P1046, P1047, P1072, W806 Rabanus-Wallace, Mark T P0475 Rabiei, Babak P0502 Racelis, Alexis W640 Radisek, Sebastjan P0463, P1067 Radwan, Osman W561, W756 Raffin, Annie P0990 Raghavan, Maanasa P0324 Ragu, Mohana W796 Ragupathy, Raja P1039, W291 Rahimi, Mehdi P0502 Rahimi Ashtiani, Samira P0138 Rahman, Md. Sazzadur P0508 Rahman, Mukhlesur P0108 Rai, Aswathy N P0167 Raina, Aparna S. P1053 Rainey, Katy Martin P0689, P1180 Raithel, Seth P0134 Rajao, Daniela W832 Rajaraman, Sitaram P0971 Rajewski, John P0556 Rajput, Bhanu P1115, W273 Rajwanshi, Ravi P0720 Ralph, John P0027, W094 Ralph, Paula P1078 Ralston, Sarah P0342 Ramakrishnan, Srividya P1138 Ramalingam, Abirami P0209, W004 Raman, Harsh W604 Ramaraj, Thiru P0765, W712 Ramaraj, Thiruvarangan P0533, P0767,

P1044 Ramayo-Caldas, Yuliaxis P0363

331

Ramesh, Palakurthi P0568 Ramey, Holly R. P0280 Ramirez, Oscar W156 Ramirez-Gonzalez, Ricardo H. P0602, W465

Ramos, John P0434 Ramos, Patricio P0993 Ramos, Rommel T. J. P0459 Ramsay, Larissa W209 Ramsay, Trevor W306 Ramsey, Sheila P0327 Ramstein, Guillaume P. W429, W565,

W567 Ramunno, Luigi W108, W109 Randhawa, Harpinder P0467 Randhawa, Mandeep P0639 Raney, Nancy E. W831 Ranjan, Priya C29, P1138 Rank, David P0068, P0097 Rao, Idupulapati P0752, W221 Rao, Rosa P0853 Raoul, Jérôme P0377 Rapicavoli, Nicole P0097 Rappel, Wouter-Jan P0806 Rasmussen, Søren Kjærsgaard P0668 Rathjen, John P. W518 Rathore, Abhishek P0208, P0566,

P0742, P0783, W009, W212, W763, W778

Rathore, Dheeraj P1090 Rätsch, Gunnar P0145 Rattanakon, Supakan W423 Rattunde, Fred W002 Rau, Domenico P0753 Raudsepp, Terje P0315, P0322, P0333 Rauh, Brad P0552 Raveendran, Muthuswamy P0073, W360 Rawat, Nidhi P0613, P0924, P0927 Ray, David A. W279 Ray, Jeffery D. P0716 Razaque, Samsad P0508 Reagan, Russell W332 Reagon, Michael W097 Real, Daniel P0777 Rebl, Alexander P0234 Rebolledo, Boris P0062 Records, Angela W172, W284 Reddi, K V N Rathnakar P0568 Reddy, Arjula R P0568, P0954, P1079 Reddy, CVC Mohan P0568 Reddy, Joseph S P0167 Reddy, Lachagari V. B. P0568 Reddy, Sanjay W847 Reddy, Umesh K. W228, W229 Redoña, Edilberto D. P0507 Reecy, James M. P0225, P0269, P0297,

P1113, P1157, P1188, W025, W054, W106, W108, W145, W147, W158, W278, W663

Reed, Kent M. P0405, W656 Rees, Jasper P0292, P1045 Reeves, Gregory P. P1088 Regiani, Thais P0112, W837 Regitano, Luciana C.A. P0290, W252

Reguera, María W566 Reich, David W238 Reichert, Gert-Jan P1084 Reid, Robert W538 Reidel, Edwin W609 Reis, Matheus P0426 Reisch, Bruce P0873, P0882, P0889,

W012, W419 Reis Júnior, Osvaldo P0213 Reitsma, Kathleen P1074 Rellán Álvarez, Rubén P1016 Ren, Longhui P0693, P0737, W866 Ren, Yi W225 Ren, Zhuqing P0364 Renaut, Sebastien W197 Rendón-Anaya, Martha P0746, P0750 Rengel, David W849 Renken, Lindsey P0040 Renny-Byfield, Simon W213 Rensing, Stefan A. P1089, W527 Resende Jr., Marcio F P0095, P0985 Resztak, Justyna A P0979 Reuveni, Moshe W757 Reveche, Maria Ymber V. P0489 Reverter, Antonio P0306, P0430, W152,

W155 Revilleza, Jastin E. W777 Rexroad, III, Caird E. P0244, P0247,

W055 Rey, Elodie W172 Rey, Jessica D. P0505 Rey, M Dolores R. P0667 Reyes, Jose L W493 Reyes Chin-Wo, Sebastian P0460, P1011, P1013, P1062, W196, W380, W436

Reynaldo, Yadira W394 Reynolds, James O. P0381 Reynolds, Matthew P0594, P0596, W774 Reynoso, Mauricio A. W356 Rhee, Seung Yon P0806 Rhee, Sun-Ju P0938 Rhoads, Douglas D. P0404, P0407,

P0412, P0414, P0415, W642, W648, W654, W658, W664, W670, W672, W673

Rhoads, Robert P. W025 Riaz, Summaira P0873, W418 Ribaut, Jean-Marcel W761 Ribeca, Paolo P0390 Ribeiro-Alves, Marcelo P0966 Ribeiro Reis, Rafaela P0203 Ribolla, Paulo E. Martins P0177, P0439 Ricaurte, Jaumer P0752, W221 Ricca, Mariana W618 Ricci, Andrea P0575 Richards, Christopher M. W391 Richards, Jonathan P0474, P0675, P0679, P0978

Richards, Stephen W068, W139, W453, W861

Richaud, Frédérique W552 Richter, Jacqueline C10 Riddle, Suzette P0310

Ridenour, John B. P0456 Riedl, Ken M. P0857 Rieseberg, Loren H. P0950, P0951,

W197, W317, W573, W633, W849, W851, W893

Rife, Trevor W. P0592 Riggio, Valentina P0293 Riggs, Penny W137 Rigoreau, Michel W180, W181 Rigotti, Serena W122 Rincent, Renaud P1178 Rincon, Gonzalo P0306 Rinehart, Timothy A. P0922, W547 Rios, Juan Carlos P0912 Rios-Acosta, Lorena P0517, P0538 Rischkowsky, Barbara W026 Risinger, Jan P0040 Rival, Alain W552 Rivas, Paulina P0062 Rivero, Luz P0793 Rizzolatti, Carine P0663, W882 Robert-Granié, Christèle P0383, W444 Roberts, Philip A. P0204, P0784, P0785,

P0786, W489, W766, W767 Robinson, Julie W834 Robledo, Francisco P0912, W334 Robson, Paul R. H. P0028 Rochfort, Simone P0138 Rodde, Nathalie P0070, P0663, W882 Röder, Marion S. P0606 Rodgers-Melnick, Eli P0528, W008,

W720 Rodrigo, M.J. P0667 Rodrigues, Fabiana Aparecida P0203 Rodrigues, Josiane Isabela da Silva

P0101 Rodrigues, Marcela Iara P0996 Rodrigues Guimaraes, Joao F. P0095,

P0985 Rodriguez, Juan C. W474 Rodriguez, Monica P0753 Rodriguez-Alonso, Gustavo P0034, P0222

Rodriguez-Salus, Melinda P0140 Rodriguez Lopez, Carlos M P0233, P0877, W041

Roe, Bruce A. P0965 Roest Crollius, Hugues C06, P1006 Roffler, Stefan W868 Rogel-Gaillard, Claire P0363, P0373,

P0443 Rogers, Allison P0408, P0429 Rogers, Jane W172 Rogers, Jeffrey P0073, W139, W360,

W453, W861 Rognon, Gabriel P0392 Rohland, Nadin W238 Rohrer, Gary A. P0370, W827 Rojas, J. Alejandro W286 Rokhsar, Daniel S. P1124, P1126, W029, W080, W326, W409, W713, W780, W864

Roldan-Ruiz, Isabel W431, W564 Rolshausen, Philippe E. W418

332

Roman-Paoli, Elvin P0752, W221 Romaniuc, Alan Roberto P1170 Rombauts, Stephane W019, W202 Romero-Severson, Jeanne P0969,

W312, W878 Ron, Mily W356 Ronald, Pamela P1138 Rong, YIng P0058 Rooney, William W174 Rooney, William L. P0559 Roorkiwal, Manish P0781, P0782,

P0783, W009, W763, W778 Roozeboom, Kraig L. W747 Rosa, Guilherme J. M. P0105 Rosa, João Ricardo Bachega Feijó

P0758 Rosa, Kamila O. P0290 Rosado, Tatiana Barbosa P0007 Rosas, Juan Carlos W169 Rose, Michael R. W637 Rosen, Benjamin D. C23, P0790, P0792,

W059, W410, W876 Roskens, A. Bruce P0682, W536 Ross, Jason W. P0348, W025 Ross, Pablo J. W535 Ross-Ibarra, Jeffrey P0529, P0531 Rossignol, Pascale P0930 Rossini, Laura P0916, W326, W888 Rossoni, Attilio P0288 Rosyara, Umesh R. P0841 Rothan, Christophe W324 Rothfels, Carl J. P1082, P1085, P1086 Rothschild, Max F. P0121, P0348,

P0394, P0395, P0399, P0400, P0401, P0426, W026, W028, W137

Rotter, Bjorn P0733, P0941 Rottmann, Will P0986 Rouard, Mathieu P0109, P0944, W070,

W074, W679 Roulund, Niels P1050, W433 Roumet, P. W504 Rounsley, Steve P1071 Rouse, Franchesca P0001, W316 Rouse, Matthew P0644 Rouse, Matthew N. W365 Rousseau-Gueutin, Mathieu W015 Roux, Jolanda P0458 Roux, Nicolas P0109, P0944, W070 Rowe, Suzanne W390 Rowland, Diane P0740 Rowland, Gordon W294 Rowland, Raymond R. R. P0225, W828 Royaert, Stefan E. W116, W118 Roy Choudhury, Dipa P1146 Royer, Frédéric P1162 Ru, Sushan C13, P0888, P0894 Ruan, Yuefeng W035 Ruas, Max P0944 Rubin, Carl-Johan P0324 Rubin, Edward M. P0324 Rudd, Jackie C P0625, P0634 Rueda, Carlos Gustavo Martínez P0594 Ruess, Holly P1074 Ruff, Travis P0030

Rüger, Simon W308 Ruhsam, Markus P1086 Ruiz, Didac Santesmasses W201 Ruiz, Felipe de Jesús P0282, P0294 Ruiz, Manuel P1111, W448 Ruperao, Pradeep P0778, P0782 Rupp, Oliver P0141 Rupp, Rachel P0379, W137 Russ, Carsten W090 Russo, Maria Anna P0585 Russo, Vincenzo P0355 Rutkoski, Jessica P0647 Ruttink, Tom P0195, W431, W564 Ryder, Oliver P1000 Rydzak, Patrick W065 Rynge, Mats P0696 Ryona, Imelda P0873 Ryu, Ju Hyun P0132 Ryu, Sangryeol P0450 Sa, Maria E.L. P0725 Sa, Suellen P0341 Saad El-din Ahmed, Sahar W109 Sabates, Sofia P1030 Sabot, François W552 Saburido Álvarez, Soledad P0746,

P0750 Sacco, Randy E. P0119 Saccomani, Massimo W804 Sacks, Erik J. P0026, W563 Sacks, Gavin P0873, W419 Sade, Nir W566 Sadia, Bushra P0946 Sadowski, Jan P0188 Saelao, Perot P0397, P0425 Safar, Jan P0191, P0591 Safranski, Timothy J. W025 Sage, Rowan F. P0179 Sage, Tammy L. P0179 Sager Bittara, Lauren P. P0675 Saha, Gopesh P0763 Saha, Malay C. P0024, P0137, P1048,

W078 Saha, Rajib P0535, W262 Saha, Surya W726 Sahab, Sareena P0138 Sahrawat, Kanwar P0567 Saied, Clare W537 Saintilan, Romain P0304, P0379 Saint Pierre, Carolina P0594, P0596 Saito, Kazuki W734 Saito, Misa P1125 Sajjad, Mohammad P0545 Sakai, Hiroaki P0496, P0749 Sakakibara, Hitoshi W734 Sakayama, Hidetoshi P1089, W527 Sakazono, Satomi P0799, P0800, P0801 Sakhale, Sandeep A P0562 Sakiroglu, Muhammet P1036 Sakuma, Mari P0660 Sakuma, Tetsushi W734 Sakurai, Tetsuya P0154, P0685 Sakuray, Leonardo Murai P0213 Salamin, Nicolas W797 Salas, Alexis P0062

Salas-Leiva, Dayana E. W558 Salcedo, Adriana W894 Saleeba, Jennifer A. P0807 Salem, Abdelazem P0632 Salem, Mohamed P0248 Sallam, Ahmad P0665 Sallam, Ahmed M. A. P0311 Salmon, Armel P1056, W015 Salojärvi, Jarkko T P0971, W302 Salse, Jerome P0584, W795 Salvi, Silvio P0575, P0604, P0657, W508, W705

Salzberg, Steven L P0577, P0988, W332, W460, W474, W568, W569

Samans, Birgit P0818, P0819 Samarkoon, Thilani P0134 Sambanthamurthi, Ravigadevi W556 SameerKumar, CV P0788, P0789 Saminathan, Thangasamy W228 Samineni, Srinivasan W778 Sammons, R Douglas W851 Samore, Antonia B. P0287 Samorè, Antonia Bianca P0344, P0355,

W823 Sampson, Juliana P1109 Sana, Maria W156 Sanabria, Yamid P0512 Sanchez, Armand P0376, W442, W824 Sanchez, Federico P0746, W493 Sanchez, Geisha Shaina Lyn B. P0489 Sanchez, Juan W603 Sanchez, Laura W678 Sanchez, Leopoldo P0990, W554 Sanchez, Vanessa W558 Sanchez-Moran, Eugenio W687 Sánchez-Sevilla, José F. P0919, P0920 Sanchez Perez, Gabino F. P0871, W019 San Cristobal, Magali P0168 Sandal, Niels P0692, W506 Sanders, William S. P0462, P0465 Sanderson, Lacey-Anne W408, W872, W873

Sandhu, Hardev S. P0009, W811 Sandionigi, Anna P1037 Sang, Dajun W700 Sankoff, David P1019, W180 Sansaloni, Carolina Paola P0514, P0594 Sanseverino, Walter P0746 Santalla, Marta P0746 Santana, Damaris W169 Santhosh, Sam P0954 Santoro, Nicholas P0027, W078, W094 Santos, Anselmo Azevedo P0074 Santos, Jansen Rodrigo Pereira P0204,

P0784, P0785, W767 Santus, Enrico P0285 Sarah, Gautier P1111 Saranga, Yehoshua P0611, P0636, W364

Sarazin, Alexis P0796 Sardos, Julie P0109, P0944 Sargolzaei, Mehdi P0283, P0298 Sasaki, Harumi P0706 Sasaki, Takuji P0485

333

Sasaki, Yohei P1122, P1125, P1161 Saski, Christopher A. P0969, W282,

W312 Sassa, Hidenori P1063 Sating, Richard P1165 Sato, Akihiko P0878 Sato, Mayu P0799 Satou, Kazuhito P0749 Satyawan, Dani P0747, P0762 Saucedo-Barron, Cesar J. P0259 Saunders, Diane W519 Saunders, Gary C01, P1106, W370 Sauvage, Christopher C15, P0854,

P1128 Sawada, Yuji P0685 Sawai, Satoru W734 Sawers, Ruairidh P0594 Sawkins, Mark W503, W761, W762 Saxena, Rachit K P0788, P0789, W212 Sayama, Takashi P0706, P0712, P0713 Sayre, Brian P1188, W026, W137,

W144, W440 Sazuka, Takashi P1166 Sbalzarini, Marco P0578 Scaglione, Davide P0001, W179, W316 Scalabrin, Simone P0001, P0575,

P0587, W179, W308, W316, W326 Scanlon, Michael P1010, W499 Scarano, Daria P0853 Schaefer, Rob P0318 Schaefer, Robert W277 Schaeffer, Mary C10 Schaeffer, Scott P0899 Schaffer, Ari W227 Schaffert, Robert W002 Schafleitner, Roland P0941 Schagat, Trista P0066, P0096 Schardl, Christopher P0193 Schatz, Michael P0097, P1138, W088,

W615, W819, W859 Schelkunov, Mikhail I. P1059 Schenkel, Flavio P0283, P0298 Schiavini, Fausta P0285, P0287, P0288 Schiavo, Giuseppina P0344, P0355,

W823 Schijlen, Elio W019 Schinor, Evandro Henrique P0929, W161 Schlake, Hannah P0569 Schlarbaum, Scott P0969, W312, W878 Schlauch, Karen A. P0155, P1066, W347 Schlegel, Kim W122 Schluepmann, Henriette P1084, P1085 Schlueter, Jessica P0699, W538 Schmickl, Roswitha P0065 Schmidt, Carl J. P0121, P0394, P0400,

P0401, P0408, P0426, P0429, P1116, P1150, W028, W279, W660, W770

Schmidt, Eva P1182 Schmidt, Martha W115 Schmidt, Thomas W071 Schmidt, Ty B P0167 Schmitz, Robert W187 Schmutz, Jeremy P0003, P0570, P0699,

W326, W529, W713, W780, W784

Schnabel, Robert D. P0275, P0280, P0290, P0302, P0312, P0388, P0837, W111, W141, W147, W154, W252, W636

Schnabel, Sabine W308 Schnable, James C W497 Schnable, Patrick S. P0183, P0522, W382, W495, W900

Schneeberger, Korbinian W428 Schneider, Blair Kathleen P0426 Schneider, Jim F. P0370, W827 Schneider, Kevin W582 Schneider, Maria P. C. P0459 Schneider, Valerie C21, P0791, P1120 Schnell, Raymond J. W116, W118, W119 Schnurbusch, Thorsten P0606, P0670,

W881 Schoel, Bernd P0045, P0061 Scholten, Olga E. P1061 Scholz, Uwe P1155, W713, W889 Schook, Lawrence B. P0373 Schrader, Lukas W524 Schranz, M. Eric P0827 Schranz, M Eric P0179, W627 Schreiber, Lukas P0912 Schreier, Spencer P0718, W626 Schroeder, Julian I. P0798, P0806 Schroeder, Mercedes P0140 Schroeder, Steven G. P0277, W108,

W141, W144, W155, W440 Schrooten, Chris P1172 Schroyen, Martine P0225 Schubert, Mikkel P0323, P0324 Schubert, Veit W589 Schuhmacher, Rainer P0130 Schukken, Ynte H. P0079 Schulman, Alan H. W871, W886 Schulman, Nina F P0284 Schultner, Eva W524 Schultz, Carolyn J. P1184 Schulz-Streeck, Torben P0553 Schumacher, Cassie A. P0076 Schuster, Stephan P0969 Schwab, Wilfried P0918 Schwacke, Rainer P1134 Schwartz, David C. W139 Schwartz, Steven P0851, P0857 Schwarz, Erich M. P0454 Schwarz, Flavio P0117, W437 Schwarzacher, Trude W071, W591 Schweiger, Wolfgang P0130 Schweitzer, Peter P0873, W419 Schwinn, Kathy P0972 Scott, Alison Dawn P0983 Scotti, Emilio P0344, P0355, W823 Seabury, Christopher M. P0381, W140 Searle, Iain P0877 Seaver, Samuel M. D. P0163, P1066,

P1138, W347, W784, W836 Sebastian, Jose P1016 Sebela, Marek P0191 Sedbrook, John C. P0027, W083, W094 Seefried, Franz R. P0281 Seem, Bob P0873

Seetharam, Arun P0232 Seetharam, Arun S. P0520, W412 Seeve, Candace P0984 Seferian, Rhianna P0341 Segev, Ori P0447 Segovia, Vanesa P0602, W465 Seguin-Orlando, Andaine P0323, P0324 Sehabiague, Pierre P0532 Sehgal, Deepmala W774 Sehgal, Sunish K. W713 Seibert, Jacob T. P0348, W025 Seidel, Michael W559 Sekhar, Akila Chandra P0568, P1079 Seki, Hikaru W734 Seki, Kousuke P1063 Sela, Hanan P1027 Selosse, Marc-André P1059 Selsby, Joshua T. W025 Selvanayagam, Sivasubramani P0562,

P0566 Semagn, Kassa P0532 Semel, Yaniv W505, W737 Sempéré, Guilhem P1111, W448 Sen, Taner Z. C10 Senalik, Douglas P1074, P1077, W222,

W250 Senturk Akfirat, Funda P1036 Seo, Dongwon P0353 Seo, Seongwon P0299 Seon, Dong W212 Septiningsih, Endang M. P0509 Seraj, Zeba Islam P0508 Serapiglia, Michelle W315 Serba, Desalegn P0137, W078 Serbin, Shawn P. P0518 Sergio Cortez, Gamboa P0594 Sergio Ivan, Román Ponce P0282,

P0294 Serizawa, Hiroaki P1063 Serra, Octavio P0915 Serradilla, Juan Manuel W442 Serrano, Jonathan P0730 Servin, Bertrand P0270, P0423 Sese, Jun P0803 Sessa, Emily P1082, P1086 Session, Adam W713 Settles, A. Mark W899 Settles, Matthew P0176, P0418 Severin, Andrew J. P0232, P0236,

P0520 Sevindik, Basar P1031 Seymour, Roger P0154 Sforça, Danilo A. W821 Shabir, Nadeen P0371 Shack, Leslie A P0167 Shaff, Jon W002 Shah, Trushar P0566 Shaker, Patricia D.C. P0466 Shakiba, Ehsan P0490, W010 Shamimuzzaman, Md P0207 Shan, Yunfeng P1043 Shandu, Siphiwokuhle P0537 Shang, Yongjin P0138 Shanker, Vijay P0429

334

Shanklin, John P0546, W084, W814, W833

Shanmugasundram, Achchuthan P1024 Shannon, Grover P0702, W706 Shanshan, Yang W682 Shao, David P1109 Shao, Jonathan W115 Shao, MIN P0091 Shapiro, Beth G002, P0324, W239 Sharaf, Abdoallah W824 Sharbel, Tim W189, W193 Sharbel, Timothy F. W194 Sharma, Govind C. P0965 Sharma, Hari P0562 Sharma, Keshav P0691 Sharma, Mamta P0788 Sharma, Nimisha P0933 Sharma, Prachi P0622 Sharma, Rajan W436 Sharma, Rajiv W881 Sharma, Rishu W166 Sharma, Sapna P0130, W432 Sharma, Shailendra W563 Sharma, Shiveta W563 Sharma, T. R. P0933 Sharma*, Ram K. P1053 Sharma Khatiwada, Sandeep P0456 Sharon, Itai W787 Sharpe, Andrew G. P0580, P0581,

P1039, W035, W209, W291, W476, W809

Sharpe, Richard P0858 Sharpe, Ted W090 Shasha, Dennis W058 Shasidhar, Yaduru P0739 Shatters Jr., Robert G. P0434 Shaw, Jonathan W529, W784 Shearer, Lindsay P0849, W689 Sheikh, Imran P0622 Sheikh, Mehboob B P0883 Shekhtman, Eugene P1109 Shelton, Jennifer P0134 Shem Tov, Doron W227 Shen, Botong P0273 Shen, Danyu W115 Shen, Jie P0435 Sheng, Zheya P0406 Shepherd, Daisy W020 Sher, Andrew P0980 Sher, Andrew W. P0981, W263 Sherman, Jamie P0613, W032 Sherwood, David A. W190 Shi, Haiying P0060 Shi, Lina P0125 Shi, Qinghua W366 Shi, Shanshan P1071 Shi, Yongsheng W791 Shi, Zi W117 Shigematsu, Miku P1176 Shih, Ming-der P0201 Shikata, Masahito P0850 Shim, Sang-In P0538 Shim, Sangrea P0709 Shimelis, Hussein P0649

Shimizu, Kentaro K. P0800, P0803, W618

Shimizu, Takehiko P0706 Shimizu, Tokurou C30, P1131, W163 Shimizu, Yukari P1063 Shimizu-Inatsugi, Rie P0803 Shimpa, Lindsey P0623 Shin, Chanseok P0127, P0812 Shin, Diana P0793 Shin, Donghyun P0291 Shin, Hosub P0132, P0196 Shin, Hyunsuk P0103, P0904, P0906,

P0907 Shin, Sang-yoon P0127 Shinozaki, Kazuo P0154, P0685 Shinozuka, Hiroshi P0107, W297 Shinozuka, Maiko P0107 Shirasawa, Kenta W100 Shirsekar, Gautam W606 Shishkova, Svetlana P0034, P0222 Shiu, Shin-Han W522 Shockey, Jay W086, W245 Shomura, Ayahiko P0496 Shotkoski, Frank P1102, W073 Showmaker, Kurt P0462, P0465 Shtratnikova, Viktoriya Ju. P1059 Shu, Dingming P0406 Shu, Shengqiang P1124, W326, W529,

W784 Shuck, Kathy P0339 Shumaker, Ketia P0969, W231, W312,

W878 Sibout, Richard W094 Sicheritz-Ponten, Thomas P0323, P0324 Siebert, Lydia J. P0309 Siemens, David P0834 Siemering, Kirby P0777 Sierro, Nicolas P0870 Sigel, Erin M. P1082, P1085 Signer-Hasler, Heidi P0281 Sikora, Marcin P0303 Silva, Artur Luiz Costa P0048, P0459 Silva, Claudio B. C. W821 Silva, Fabyano F. P0366, P0368 Silva, Herman P0912, W321, W326, W327, W330, W334

Silva, Joaquim Manoel da P0289, P1021, P1170

Silva, Mariana de Souza e W837 Silva, Mariana Souza P0112 Silva-Junior, Orzenil Bonfim P0743,

P0945 Silveira, Sylvia P0966 Silverstein, Kevin AT P0736, P0765,

P0768, P0771 Sim, Sheina P0431 Simkova, Hana P0587, P0589, P0590,

P0591, W014, W471, W886 Simmonds, James P0642 Simmons, Alvin M. P0440 Simmons, Rachel E. P0249 Simon, Phil P1074 Simon, Philipp W. P1076, P1077, W222,

W250

Simon, Reinhard P1040 Simons, Margaret P0535, W262 Simsek, Ozhan P1031, P1101 Simsek, Senay P0615 Singh, A. K. P0933 Singh, Akshay P0933 Singh, Davinder P0642, P0678 Singh, Dharmerndra P0622 Singh, Gagandeep P1053 Singh, Jaswinder P0015, P0662 Singh, Jugpreet C11, P0690, P0697, P0735, P0737, W223

Singh, Kanwardeep P0610 Singh, Karam W491 Singh, Kashmir P0832 Singh, Muneendra W778 Singh, Murari P0621 Singh, N. K. P0933 Singh, Namrata P0490 Singh, Narendra P P0783, W009 Singh, Pawan P0594, P0596 Singh, Pradeep P0488 Singh, Rajinder W556 Singh, Ram P0340 Singh, Ratnesh W299 Singh, Ravi P. P0599, P0647, W461 Singh, S. K. P0933 Singh, Shardendu K P0716 Singh, Sukhwinder P0594, P0596, W461 Singh, Surinder P0662, W087 Singh, Vikas K P0788, P0789 Sinha, Neelima R. W356 Sinha, Pallavi P0788 Sinha, Sangram W718 Sirault, Xavier P0038 Sisco, P. P0995 Sisneros, Nick P0068 Siwek, Maria P0428 Skidmore, Edwin C22 Skoglund, Pontus W238 Skoneczka, Jeffrey A P0727 Skot, Kirsten P. W430 Skot, Leif W430 Skowron, Waldemar P0864 Slattery, Rebecca A. P0010, W814 Slavov, Gancho T. P0028, P0274 Slawinska, Anna P0428 Sloan, Daniel P1052 Slotte, Tanja W894 Slovin, Janet P. P0921 Slunsky, Renate W641 Small, Ian P0071, W542 Smallfield, Bruce P0972 Smart, Lawrence P0003, W008, W315,

W720 Smeda, John R. P0859 Smeekens, Sjef P1084 Smets, Pia W317 Smith, Carolyn P0069 Smith, Christopher D. W524 Smith, Douglas P0373 Smith, Hazel Katherine P0001, W308,

W316 Smith, James R. P0716

335

Smith, Jeramiah J. P0118, P0120, P0122, P0124, P0446, W743

Smith, Jonathon E. P0456 Smith, Kevin P. P0661, P0665, P0672,

P1004 Smith, Morgan C. P0159, P0161 Smith, Scott W538 Smith, Steven W W556 Smith, Timothy P.L. W139, W144, W288,

W440, W789, W862 Smith, Todd P1147 Smith, Wayne P0964, W016, W685,

W848 Smith-White, Brian C21, P0791, P1120 Smoczynski, Rafal P0303 Smolinski, Tomasz P0759 Sneller, Clay P0598 Snowdon, Rod P0553, P0818, P0819 Sobczynski, Helen A. P0405 Socias i Company, Rafael P0914, P0917 Soderlund, Carol W460 Soekamto, Michael P0413 Soh, Hye Yeon P0132 Soifer, Ilya W184 Sollars, Elizabeth W313 Solovieva, Elena P1148 Soltani, Ali P0760 Soltanloo, Hassan P0115 Soltis, Douglas E. P1082 Soltis, Pamela S. P1082 Somers, Daryl J. P0890, P0913, W328 Sonah, Humira W706 Sonder, Kai P0514 Sone, Mikako P0800, P0801 Song, Bo P1085 Song, Jawon P1181, W267 Song, Jian P0548, W811 Song, Jiuzhou P0277, P0416, P0417, W024, W141, W643, W665

Song, Li P0765, P1164 Song, Liang W358 Song, Lin P0242 Song, Qijian P0101, P0699, P0708,

P0730 Song, Qingxin P0959, W216 Song, Yan C25, P1149 Song, Zhihong P0134 Songkumarn, Pattavipha W606 Sonstegard, Tad S. P0271, P0277,

P0279, P0301, W106, W108, W137, W141, W143, W144, W150, W155, W387, W440

Sorahi Nobar, Mona P0115 Sørensen, Anker P0053 Sorgini, Crystal A. P0538 Sorrells, Mark E P0614, P0647, W746,

W763 Soto-Cerda, Braulio W294 Soucaze, Marion P0796 Soula, Julie P1162 Sourdille, Pierre W691 Sousa, Tatiane Pires P1021 Souza, Alessandra Alves de P1103 Souza, Anete P W821

Souza, Emanuel W707 Souza, Glaucia M. P0011, P0549, W817,

W818, W819 Souza, Layanne B. P0551 Souza, Marcela M. P0290 Souza, Silvana Creste P0180 Souza, Sylvia M. W002 Souza-Neto, Reinaldo Rodrigues de

P1103 Souza Junior, Manoel Teixeira P0008,

W553 Soysal, Ihsan W109 Spalding, Edgar W853 Spangenberg, German P0138, W297 Spangler, Matt L. W027 Spannagl, Manuel C17, P0654, W432,

W559 Spanu, Pietro W607 Sparks, Erin W704 Specht, James E. P0705, P0708, W755 Speidel, Scott E. P0169, P0310, W142 Speiser, Lyndi E P0378 Spittle Kim, Kristi P0068, P0519 Spooner, David P1074 Spotted Gar Genome Consortium W525 Spring, Otmar P0460, W436 Springer, Nathan M. P0540, P0843, W496

Sprink, Thorben W686 Sprycha, Yves P0998 Squance, Michael P0028 Sreedhar, Arjun P1046, P1047, P1072,

W806 Sreekanta, Suma P0717 Sribalusu, Venkatanaga C10 Sridhar, Varshini P0886 Srinivasan, Subhashini P1046, P1047,

P1072, W806 Sripathi, Venkateswara R. P0965 Srivastava, Manish P0933 Srivastava, Manoj W190 Srivastava, Stuti W058 Srour, Ali P0726 St. Clair, Savanah P0784 Stabellini, Natalia Spagnol P0550 Stacey, Gary P0694 Stadnik, Agnieszka P0238, W037 Stagegaard, Julia P0323 Staiger, Elizabeth A. P0329, P0340 Stajner, Natasa P0463, P1067 Stam, Maike W581 St Amand, Paul P1030, W639 Stanca, A Michele P0587 Stanke, Mario W203 Stankova, Helena P0590, W014, W471 Staton, Margaret P0969, P0995, W304, W312, W878

Staton, S. Evan P0950, W195 Staub, Jack E. P1049 St Clair, Savanah M P0785, W767 Stec, Adrian O. P0722, W403, W621 Steel, Victor P0986 Steffen, Joshua G. P0145

Steffenson, Brian J. P0190, P0672, P0677, W887

Steibel, Juan P. P0225, W831 Steige, Kim W894 Stein, Joshua P1119, W413 Stein, Nils P0657, P0658, P0670, W363,

W508, W705, W713, W886, W889 Steinbach, Delphine C15, C17, P0654, P1128, W421, W478, W504, W795

Steinfartz, Sebastian P0447 Stella, Alessandra W109, W137, W441 Stelly, David P0958, W218 Stelly, David M. P0956, P0965 Stenderup, Jesper P0324 Stenmark, Kurt P0310 Stephen, Stuart W681 Stephens, Claire S. P0409 Sternberg, Paul W. P0454, P1020, W396 Stevanato, Piergiorgio W804 Stevens, Carlynn P0327 Stevens, Kristian P0988, W332, W568,

W569 Stevens, Rick P1138 Stevenson, Dennis Wm. P1086, W842 Stewart, Fiona J P0050 Stewart Jr., C. Neal P0014, P0020,

P0021, P0199, P1091, P1097, W851 Still, David W. P1060, W470 Stinchcombe, John W894 Stirnweis, Daniel P0648, W243 Stock, Patricia P1020 Stoc�es, Stepan P0195 Stoddard, Thomas W600 Stoffel, Kevin P0956 Stökl, Johannes W524 Stölting, Kai N. W634, W797 Stones-Havas, Steven P1145, P1171 Stoop, Marianne P0286 Storey, Roy W331 Stothard, Paul W828 Stougaard, Jens P0692, W506 Straathof, Christina T. P0165 Straub, Shannon P0065, P0775 Strausbaugh, Carl W807 Strauss, Günter P0323 Strauss, Steven W594 Streich, Jared C. P1023 Strem, Mary W115 Stricker, Christian P0281 Strickler, Susan R. P0839, W180, W725 Strillacci, Maria G. P0287, P0288 Strnadova, Veronika W713 Stromberg, Arnold J P0334 Strozzi, Francesco W106, W111 Strzala, Tomasz P1026 Stuardo, Marcela P0062 Stubbs, Joe C23, P0790, P0792, W059 Studer, Bruno P1051, W300 Stupar, Robert M. P0717, P0722, P0771,

P1004, W403, W597, W621 Su, Baofeng P0245 Su, Handong P0525, W585 Su, Hang W587, W688 Su, Wenyue P0182

336

Suarez-Gonzalez, Adriana W320 Suarez-Lopez, Victor P0259 Subramaniam, Sabarinath W159, W481 Subramanian, Jayasankar P0913, W328 Subramanian, Senthil P0718, P0719, W626

Subudhi, Prasanta K. P0488 Suda, Jan P0065 Sudini, Harikishan P0208 Suggi Liverani, Furio W179 Sugimoto, Kazuhiko P0495, P0503,

P0612 Sugiura, Masahiro P0223 Suhre, Karsten W559 Sui, Shunzhao P1058, W550 Sullivan, Julie C23, P0790, P0792, W059 Sultmanis, Stefanie P0179 Sumantri, Cece W109 Sun, Chuanyu P0273 Sun, Chunyu P0156 Sun, Honghe W225, W229 Sun, Jiajie W155 Sun, Liang P0401, P0408, P0429, P1116 Sun, Lianjun P0705, W755 Sun, Luyang P0240, P0245 Sun, Qi P0513, P0873, P0882, P0887,

W012, W419 Sun, Qixin W460, W474 Sun, Qun P0651 Sundararajan, Anitha P0533, P0534,

P0770 Sundaresan, Venkatesan W856 Sunil, Meeta P1046, P1047, P1072,

W806 Sunkar, Ramanjulu W006, W493 Surana, Priyanka P0192, W607 Suren, Haktan W317, W573 Surujdeo-Maharaj, Surendra W115 Suryanarayana, V P0788 Susko, Alexander Quentin W546 Suteu, Dana P0526 Sutherland, Ben J. G. W438 Sutter, Nathan B. P0328 Sutton, Tim P0782 Suwabe, Keita P0799, P0800, P0801,

P1122, P1125 Suzuki, Akinori P0847 Suzuki, Chika P0713 Suzuki, Go P0799, P0800, P0801,

P1122, P1125 Suzuki, Yutaka P1089, W527 Swain, Martin P0233, W041 Swaller, Timothy P0028 Swamy, Mallikarjuna P0505 Swanson, John David P0113, P0149,

P0159, P0161 Swanson, Mark P0146 Swarbreck, David P1114, W313 Swennen, Rony W070, W679 Swiderski, Cyprianna P0343 Swiecicka, Magdalena P0864 Swinburne, J. P0335, P0336 Swofford, Ross P1000 Syahanim, Salvatore P0005

Sylvia, Megan P0161 Sysopha, Jessica W097 Sze, Sing-Hoi W685, W848 Szövényi, Péter W618 Tabata, Satoshi P1121, W100 Tadele, Zerihun P1057 Tadeo, Francisco R W160 Tadiello, Alice P0892, P0893, P0902,

P0903, W329 Tadmor, Yaakov (Kobi) W227, W229 Tagiri, Akemi P0660 Taguchi, Akane P1063 Taguchi, Kazunori W805 Tai, Thomas H. W742 Tainaka, Hitoshi P1166 Takacs, Elizabeth M. P0873, W419 Takagi, Hiroki P0788 Takagi, Kyoko P0706, P0713 Takahashi, Hirokazu P0800 Takahashi, Hiroyuki W805 Takahashi, Kazunori P0799 Takahashi, Masakazu P0712 Takahira, Junko W796 Takai, Toshiyuki P0497 Takanashi, Hideki P1166 Takano, Tomoyuki P1122, P1125,

P1141, P1161 Takayama, Seiji P0800 Takazawa, Mai P0852 Takebayashi, Yumiko W734 Takeuchi, Yoshinobu P0503 Takita, Marco A. P0929, P1103, W161 Talag, Jayson W860 Talame, Valentina P0657, W508, W705 Talbert, Luther P0613, P0629, W032 Talbot, Richard W135 Taliercio, Earl P0700, W752 Talon, Manuel W160, W164 Talukder, Shyamal K P1048, P1095 Tan, Cheng P1176 Tan, Chor Tee P0625, P0634 Tan, Joon Sheong W557 Tan, Kar-Chun P0652 Tan, Xu W865 Tan, Yan-Qiu P0805 Tanabata, Takanari P0056 Tanaka, Charlene P0186, W677 Tanaka, Yuri P0500 Tang, Cuiming P0215 Tang, Guiliang P0125, W729 Tang, Haibao P0003, W315, W377,

W720 Tang, Ho Man P0183 Tang, Jifeng P0940 Tang, Juliet P0539 Tang, Xiaomin P0849, W689 Tang, Yuhong P0137 Tânia, Agostini-Costa P0136 Taniguti, Lucas M. P0466 Tanizawa, Yasuhiro C30, P1131 Tanno, Chigusa P0799 Tanskanen, Jaakko W871, W886 Tao, Ryutaro W333, W622, W717 Tao, Yaxiong P0375

Tao, Ye P0702 Tapio, Miika P0284 Taran, Bunyamin W408 Tarang, Ali R. P0502 Tarekegne, Amsal P0532 Taron, Christopher H P0050 Tartarini, Stefano W326 Tatara, Edouard P0663, W882 Tatarinova, Tatiana W093 Tatusova, Tatiana P0791, W516 Tavakol, Elahe W888 Tayal, Aditi P0268, P1117 Taylor, Daniel B P0478, W488 Taylor, Gail P0001, W253, W308, W316 Taylor, Jeremy F. P0275, P0280, P0290,

P0302, P0308, P0312, P0837, W111, W141, W147, W154, W252

Taylor, Kristen W147 Taylor, Lisa M. P0120 Taylor, Nigel J. P0093, W125 Teasdale, Matthew D. W457 Tecle, Isaak Y. P1160, W724 Teh, Chee-Keng P0006, W555 Teh, SLT W419 Teh, Soon Li P0887 Teingtham, Kanokwan P0556 Teixeira, Raffaella P0332 Tekerek, Halil P0957 Telluri, Mohan W763 Temesgen, Banchgize Getie P0642 Tempelton, Alan P0447 Teng, Pan P0429 Tennessen, Jacob W711 Tenreira, T. W324 Teotia, Sachin P0125, W729, W731 Teramoto, Yumiko P1148 Terashima, Shin P1122, P1125, P1141,

P1161 Terauchi, Ryohei P0788 Terefe, Tarekegn P0643, P0649 Terenina, Elena P0361 Terol, Javier W160, W164 Terry, Matthew P0307 Teruya, Kuniko P0749 Terzi, Valeria P0674 Tesso, Tesfaye T. P0563, W747 Tetreault, Hannah P1030 Thampi, Parvathy P0444 Thao, Fue P1165 Thapa, Shree P P0449 Theißen, Günter P0797, P1008 Thibaud-Nissen, Francoise P0051,

P1115, W273, W514 Thibivilliers, Sandra W078 Thilmony, Roger P0025, W566 Thimmapuram, Jyothi P0024, P0759,

P1073 This, Patrice P0880 Thissen, Uwe P1189 Thomas, Donald P0307 Thomas, George P0954 Thomas, Milton P0169, P0310, W142 Thomas, Varghese W285 Thomason, Jim P1119, P1138

337

Thompson, Henry J. P0755 Thompson, Matthew W901 Thompson, Steve P0523 Thompson, William F. W267, W741 Thomson, James P0082, P0091, P1100 Thomson, Michael J. P0489, P0509 Thorgaard, Gary P0248 Thornber, Carol P0159, P0161 Thrimawithana, Amali H. P0972 Thrower, Nick P0027 Thudi, Mahendar P0781, P0782 Thulin, Carl-Gustaf P0443 Thurber, Carrie S. P0561 Thurston, Yaqoob P0759 Thyssen, Gregory P0955, P0960, P0962 Tian, Bin P1095 Tian, Zhixi P0705, W753, W755 Tibbits, Josquin W681 Tidwell, Jason P. P0307 Tiede, Tyler P0665 Tiffin, Peter L. P0765, P0768, P0771,

P1004 Tilghman, Shelletta P0886 Tillett, Richard L. P1066, W347 Tillman, Barry P0740 Timms, Peter W635 Timoney, Peter P0339 Timoshevskiy, Vladimir P0446, W743 Ting, Ngoot-Chin W556 Tinker, Nicholas A. P0682, W536, W537,

W538, W541 Tinning, Matthew P0777 Tiwari, Vijay K. P0590, W477 Tixier-Boichard, Michèle P0392 Tizioto, Polyana C. P0290, P0308, P0312

Toaff-Rosenstein, Rachel P0312 Tobias, Christian W566 Todd, Antonette P0757, P0759 Todd, James W811 Todhunter, Rory P1193 Togawa, Roberto C P0743 Togawa, Roberto C. P0945 Tokunaga, Tsuyoshi P1166 Tollenaere, Reece P0824, W604 Tollis, Marc P0445 Toloue, Masoud P0040, P0436 Tomaz, Tiago P0517, P0538 Tomokazu, Masahiro P0612 Tomooka, Norihiko P0749 Tonda, Raul P0360, W442 Tondelli, Alessandro W888 Tondo, Cecile L. W119 Tong, Wei P0484 Tonnis, Brandon P1080 Tononi, Paola P0587 Toomajian, Christopher P0145, P0470 Torkamaneh, Davoud P0698 Torres, Eduardo P0874 Torres, G William P0305 Torres, Maria Fernanda W559, W721 Tortereau, Flavie P0377 Tosky, Emily P0374

Tosser-Klopp, Gwenola P0377, W137, W151, W439, W446

Toubiana, David P0855, W340 Tounosu, Noriaki W526 Town, Christopher D W059, W315, W720 Town, Christopher D. C23, P0003,

P0790, P0792, W410, W876 Townsend, Belinda W808 Toy, John P0016 Toyoda, Atsushi C30, P0492, P1089,

P1131, W527 Toyooka, Kiminori P0685 Trainin, Taly P0901 Tranchant-Dubreuil, Christine W180 Traore, Amadou W442 Trapp, Clint P0107 Trask, Stan P0226, P0230, P1107 Treible, Wayne P1150 Trenhaile, Melanie P0367 Trethowan, Richard P0619 Trick, Harold N. P0189, P1095, W352 Trigiano, Robert N. P0881, W547 Tripahti, Leena P1102, W073 Tripathi, Jaindra P1102, W073 Tripathi, Shailesh W778 Triska, Martin W093 Troìa, Angelo W097 Trovato, Andrea P0313 Truco, Maria Jose P1062, W196, W380 Trujillo, Diana P0736 Trujillo, Joshua P0043, P0775 Truong, Sandra P0559 Trzasko, Meaghan P0149 Tsai, Chung-Jui P0976, W303 Tsai, Mong-Hsun P0862 Tsai, Wen-shi P0941 Tsavatapalli, Vijaya P1118 Tseng, Elizabeth P0049, P0073, P0393,

W360 Tsilo, Toi John P0643, P0646, P0649 Tsonis, Panagiotis A. P0446 Tsuchida, Cayla W380 Tsuchiya, Rie P0491 Tsuda, Mai P0706 Tsujimoto, Hisashi P0939 Tsutsumi, Nobuhiro P1166 Tuberosa, Roberto P0575, P0604,

P0657, W508, W705 Tublitz, Nathan P0073, W360 Tudor, Catalina Oana Tudor P0429 Tuggle, Christopher K. P0225, P0347, W832

Tuinstra, Mitch P0563 Tullio, Rymer R. P0290 Tulpova, Zuzana P0590 Turakulov, Rust P0777 Turley, Rickie B. P0962 Turner, Sarah D. P1076 Turner-Maier, Jason P1000, W090 Turnipseed, Stephanie P0686, W096 Turo, Chala J. P0468 Tushemereirwe, Wilberforce P1102,

W073

Tuskan, Gerald A. P0003, P0217, W310, W574, W720, W780

Tüyel, A. Umut P1036 Tyler, Brett W115, W674 Tyler, Ludmila W097 Tyler-Smith, Chris W825 Tzarfati, Raanan P0611 Tzfadia, Oren P0855 Tzury, Galil W227 Uauy, Cristobal C18, P0602, P0642,

W033, W183, W465, W603 Udall, Josh P1044 Udall, Joshua A. C07, P0956, W281 Udvardi, Michael K. P0767 Uhlen, Anne K. P0631 Ullah, Hidayat P0527, P0536, P0545 Ullah, Zia P0527 Um, Tae Young P0153, P0812 Umale, Pooja E. C11, P0697 Umekawa, Yui P0154 Umemoto, Naoyuki W734 Uni, Zehava W655 Unni, Deepak C02, P0432, P1154, W411 Unni, Deepak R. P0267, P0268, P1117 Upadhyaya, Hari D P0208, P0739,

P0742, P0783, W212 Upham, Kendall P0842 Uppalapati, Srinavasa R. P0137, P0774 Urbanski, Dorian F. P0692, W506 Urinovska, Jana P0191 Urrutia, Maria P0918 Usadel, Bjorn P1134, W735 Uszynski, Grzegorz P0052, P1129, W502

Utro, Filippo W357, W434 Utsunomiya, Yuri Tani P0271, P0301,

W109, W155, W387 Uzzaman, Md. Rasel P0316 Vaattovaara, Aleksia P1133 Vadez, Vincent P0557, P0558 Vaghchhipawala, Zarir P1099 Vaillancourt, Brieanne P0842, W567 Vajana, Elia W109 Valadão, Isabella B. P0011 Valarik, Miroslav P0589 Valberg, Stephanie J. P0317, P0330,

P0332, P0337 Valdes-Fragoso, Billy P0001, W308,

W316 Valduriez, Patrick W448 Valè, Giampiero P0587 Valente, Guilherme Targino W821 Valente, Luisa P1135 Valentini, Alessio W106, W109 Vallarino, José G. P0919 Valle, Giorgio W179 Valledor, Luis P0062 Vallejo, Roger L. P0252, W049 Vallejo, Veronica P0867 Vallejos, Carlos Eduardo P0752, W221 Vallet, Jeffrey L. W827 Valliyodan, Babu P0060, P0696, P0702 Valpuesta, Victoriano P0919 Van, Sonny P0574, W474

338

Van 't Hof, Arjen P0433 Van Allen, Michelle W192 van As, Pieter P0376, W824 van Bers, Nikkie P0041 van Binsbergen, Rianne P1172 van Boxtel, Jos W085 VanBuren, Robert P0519 Vandecasteele, Celine W180 van de Geest, Henri P0871 Vandemark, George J. P0457, W207 Vandenberg, Albert W209, W408 van den Berg, Irene P0272 Van den houwe, Ines P0109 Van de Peer, Yves P0544, W202 Vandepoele, Klaas W431 Vander Heiden, Jason P0060 van der Knaap, Esther P0856 Van der Nest, Ariska P0458 van der Vossen, Edwin P0940, W714 van der Werf, Adrie P1084 Vandewege, Michael W. W279 Van de Wouw, Angela P0469 Van Deynze, Allen P0097, P0956, W072 Van Eck, Joyce W615 Van Eck, Leon P0891 Van Eenennaam, Alison P0306, P0312 van Eerdt, Bas P0036 van Eijk, Michiel P0106, P0940, W511 van Gessel, Nico W531 Van Glabeke, Sabine W431, W564 van Haeringen, Wim P0079 van Ham, Roeland P1189 van Heerwaarden, Joost P0992 Vanhercke, Thomas W087 van Kaauwen, Martijn P1061 Van Keuren-Jensen, Kendall P0448 Van Klink, John P0972 van Koeverden, Gerald P0026 van Oeveren, Jan P0940 van Oosterom, Erik W682 van Orsouw, Nathalie J. P0940 van Parijs, Frederik W431, W564 VanRaden, Paul M. P0273 Van Sluys, Marie-Anne W818, W819, W820

Van Stijn, Tracey W146 Vanstraelen, Sigrid W809 Van Tassell, Curtis P. P0279, W143 Vantini, Juliana da Silva P0184 van Workum, Wilbert P1061 Varakumar, Pandit P0568, P1079 Varala, Kranthi K. W058 Varela, Eduardo Sousa P0231 Varès, Didier W849 Vargas, Lourdes W156 Varma, Ram P0265 Varner, Dickson P0333 Varshney, Rajeev K P0206, P0208,

P0209, P0211, P0739, P0742, P0778, P0781, P0782, P0783, P0788, P0789, W004, W009, W165, W212, W378, W385, W425, W436, W763, W778

Vartanyan, Sergey W238 Vaske, David P0111

Vasoya, Deepali P0419, W661 Vasquez-Gross, Hans C18, C19, P0988,

W033, W183, W311, W569, W879 Vasudevan, Balaji P1099 Vatansever, Recep P1005 Vatsan, Anjana Raina C21, P0791,

P1120 Vaudin, M. P0335, P0336 Vaughn, Justin N P0198 Vaughn, Matt C23, P0790, P0792,

P1113, P1181, W062, W267 Vaughn, Matthew W059, W479 Vautrin, Sonia P0070, P0591 Vázquez, Martín P. P0746 Vee, Vanessa P0073, W139, W360,

W453, W861 Veeckman, Elisabeth W431, W564 Veenstra, Lynn D. P0614 Veerkamp, Roel F. P1172 Veilleux, Richard P0845 Veilleux, Richard E. P0842, P0846 Vekemans, Xavier P0796 Velasco, Dianne M. W219 Velasco, Riccardo P0892, P0893,

P0902, P0903, W329 Velazquez, Ahmed Missael Vargas

P0324 Vellani, Tia W434 Vendramin, Elisa W326 Vendramin, Vera P0575, W308 Venere, Paulo César P1021 Venglat, Prakash W035 Venkatesan, Aravind P1127, W448, W841

Vensel, William P0186, W677 Ventura, Ricardo W390 Verardo, Lucas L. P0366, P0368 Verbruggen, Nathalie P0809 Verbyla, Arunas W681 Verbyla, Klara W681 Vercoe, Phil W135 Verde, Ignazio W326 Verdelet, Daphné W421 Verderio, Gabriele W888 Verleih, Marieke P0234 Verma, Janu W123 Verma, Shailender Kumar P0622 Vernimmen, Douglas P1114 Veroneze, Renata P0351 Verweij, Walter P0144 Vevey, Mario P0287 Viana, João Herbert W002 Viands, Don W296 Vianello-Brondani, Rosana P. P0746 Vicentini, Renato P0012, W821 Vicient, Carlos M. W871 Vidal, Marjorie P0992 Vidal, Oriol W442 Vidigal, Bruna S. P0741, W866 Vidilla, Montse W442 Vieira, Maria Lucia Carneiro P0074 Viger, Maud P0001, W308, W316 Viglino, Andrea P0313 Vignal, Alain P0392

Vignes, Matthieu W849 Vijayaraghavan, Anupama P0093 Vikram, Prashant P0594, P0596, W461 Vila, Carles W131 Vilar da Silva, Jose H. W651 Vilarinho, Aloisio P0010, P1093, W625,

W814 Viljoen, Erika P1045 Vilkki, Johanna P0284 Villa, Víctor Zamora P0594 Villate, Laure W795 Villela, Luciana Cristine Vasques P0231 Vilstrup, Julia P0323 Vincent, Amy W832 Vincent, Eric B. P0066 Vincentz, Michel W821 Vincourt, Patrick P0950, P1162, W849 Vinnakota, Abhinav C10 Vippin, Cina P0052 Virdi, Kamaldeep S P0804 Virk, Parminder S. P0505 Visendi, Paul P0590, W014, W471 Visger, Clayton J P1082 Vishwakarma, Manish K P0739 Visser, Richard W736 Viswanathan, R. W815 Vitek, Christopher P0307 Vitte, Clémentine P0070 Vitulo, Nicola P0587, W179 Vivek, Bindiganavile S. P0532 Vivoda, Elisabetta W230 Vizzotto, Giannina W326 Vlaic, Augustin W109 Vlasova, Anna P0746, P0750, W201 Vodkin, Lila P0205, P0207, P0715 Vogel, John P1016, W099, W566, W780, W785

Voillet, Valentin P0168 Volante, Andrea P0587 von Korff, Maria W888 von Wettberg, Eric J P0780, W394 Voskoboynik, Ayelet W758 Vosman, Ben P1061 Voss, S. Randal P0446 Voytas, Dan P0093, W597, W600 Vrana, Jan P0086, P0191, P0582,

P0586, W014, W471, W886 Vrhovsek, Urska P0903 Vuong, Tri D. P0702, W706 Wachowski, Ludvik K W122 Waddell, Eli Nathaniel P0872 Wade, Claire W128 Wadl, Phillip W547 Wafula, Eric Kenneth P1078 Wagner, Andreas W618 Wagner, Geoffrey P0819 Wagner, Sarah T. P1078 Wai, Ching Man W822 Wai, Jennifer W180 Waide, Emily H. W832 Wakimoto, Hironobu P0511 Waksmunski, Andrea P1159 Waldbieser, Geoff P0239, W036 Walenz, Brian P0765

339

Walia, Harkamal P0508 Walker, Andrew P0873, W418 Walker, Lloyd T. P0965 Wallington, Emma W603 Walls, Ramona P1123, W487, W613 Walugembe, Muhammed P0395, P0399 Waminal, Nomar Espinosa P1081 Wanamaker, Steve P0204, P0658,

P0784, P0785, W766, W767 Wandycz, Antoni P1146 Wang, Changquan W085 Wang, Chao P0354 Wang, Chunkao P1176 Wang, Cong W587 Wang, Dechun P0734 Wang, Donghai W747 Wang, Fangfang W299 Wang, Fei P0956 Wang, Guo-Liang W606 Wang, Hao P0576, W460 Wang, Honglang P0842 Wang, Hongyang P0354 Wang, Jaw-Fen P0862 Wang, Ji-Rui W188 Wang, Jian P0246, P0250 Wang, Jianchao P0319 Wang, Jianping P0548, P0565, P0740, W811

Wang, Jiaojiao P0694 Wang, Jin-teh P0941 Wang, Jing W366 Wang, Jirui P0228 Wang, Juexin P0060, P0696 Wang, Jun P0274, P0783, W009, W584 Wang, Junping W297 Wang, Kangyu P0156 Wang, Kevin P1098 Wang, Li P0529, P0531, W583 Wang, Lipu P0635 Wang, Magretha Diane P0292 Wang, Min P0073, W139, W360, W453,

W861 Wang, Minghui P0882, W012 Wang, Mingli P0700, W747, W752 Wang, Ming Li P1080 Wang, Mingxun W678 Wang, Pauline P0773 Wang, Penghao W681 Wang, Qiang P1109 Wang, Qishan W799 Wang, Rui P0680 Wang, Ruijia P0240 Wang, Rui Peng P0940 Wang, Schichen P0589, P0605, W183 Wang, Shan P0110 Wang, Shichen W032 Wang, Shuilian W109 Wang, Tongli W317 Wang, Wei W894 Wang, Weiping P0042, P0077 Wang, Wendy W. P0017 Wang, Wenling P1093, W625 Wang, Xiao-Qiang P0484 Wang, Xiaodong C18, W033, W603

Wang, Xiaojun P0319 Wang, Xiaoping P0217 Wang, Xiaowu P0814 Wang, Xinwang P0017 Wang, Xiu-Jie P0525, W585 Wang, Xiyin P0942, P1001, W069,

W280, W583, W810, W865 Wang, Xue P0675 Wang, Xuewen W746 Wang, Xueyan W011 Wang, Yan P0067 Wang, Yanan P0354 Wang, Yanbo P0215, P0926 Wang, Yanfang P0156 Wang, Yanqiang P0406 Wang, Yi P0156, P0221, P1043, W460,

W474 Wang, Ying P0411, P0425, P0427,

W847 Wang, Yingxiang W584, W587, W688 Wang, Yong-Fei P0805 Wang, Yonghong W700 Wang, Yuanyuan P0261 Wang, Yue-Jun P0152 Wang, Yunzhu P0934 Wang, Zan P0769 Wang, Zhenyi W583 Wang, Zhenzhong W460, W474 Wang, Zhiquan P0345 Wang, Zi-Xuan P0492 Wanke, Stefan P1078 Warburton, Marilyn P0539 Ward, Jane W808 Ward, Ming P1109 Ware, Doreen P0555, P1119, P1138,

W750, W785, W858 Warinner, Christina G007, W240 Warkentin, Tom W210, W408 Warner, Ryan M. P0867 Warren, Wesley W127, W667 Warschefsky, Emily W394 Warth, Benedikt P0130 Warthmann, Norman P1023 Wasserscheid, Jessica P1183 Watanabe, Atsushi P0229 Watanabe, Masao P0799, P0800,

P0801, P1122, P1125 Watanabe, Satoshi P0706 Watanabe, Tei W526 Waters, Amanda P0540 Waters, Brian M P0605 Watson, Andrea P0016 Watson, Mick P1114, W788 Waugh, Robbie W713, W885 Wayne, Robert W636 Wayne, Robert K. P0388, W131 Weaber, Robert P0296 Wear, Emily E. W267, W741 Weber, Andreas P. M P0179 Weber, Andreas PM P1084, W343 Weber, Gregory M. P0250 Weber, Kristina P0306 Webster, Alexandre P0123, W728 Webster, Teresa A. P0265

Wechter, Patrick W229, W230 Weclawski, Jakub P0148 Weeks, Nathan P0695 Weeks, Nathan T. C11, P0690, P0697,

P0737, W223 Weers, Brock D. P0560, W682 Weglarz, Piotr W. P0704 Wegrzyn, Jill C03, C19, P0987, P0988,

P1153, W311, W332, W568, W569, W571

Wei, Hairong P0967, W309 Wei, Sharon P1119 Wei, Yanling W296 Weichselgartner, Tobias W524 Weigend, Steffen W668 Weinig, Cynthia W101, W103 Weirauch, Matthew T W358 Weisenfeld, Neil W090 Weitemier, Kevin P0065, P0968 Welch, Timothy J. P0252 Wells, Darren M. P0057, W709 Wells, James E. W288 Wells, Kevin W147, W830 Welsh, Amy P0387 Welti, Ruth P0134 Weltzien-Rattunde, Eva W002 Wempe, B P0563 Wen, Zixiang P0734 Wendel, Jonathan F. W213, W631 Wendler, Neele W363 Wendt, Toni P1090 Wenger, Alex P0690, W223 Wenzl, Peter P0594, W395, W461 Wesoły, Joanna P0864 Wessels, Mark P0385 Westergaard, Gastón P0746 Westhoff, Peter P0179 Weston, Dave P1138, W529, W781, W857

Whalen, Jeanne W332 Wheeler, Nicholas P0969, W312, W878 Wheeler, Raymond P1165 Whelan, Sarah E. P0118 Whetten, Ross P0984 Whigham, Ehren W607 Whitacre, Lynsey W252 Whitacre, Lynsey K. P0326, W154 Whitaker, Vance M. W335, W359 White, Paula A. P1022 White, Stephen N. P0381 Whitham, Steven A. P0721 Whitlock, Michael C. W317, W573 Whitney, Brent W503 Whitworth, Kristin M. W830 Wiatros, Natalia P0480 Wicker, Thomas P0576, P0641, W460, W868, W889

Wideman, Robert F P0412, P0414, W672

Widmer, Franco P1051, W300 Wieckhorst, Silke P0553 Wieczorek, Doug P0066 Wiegert-Rininger, Krystle P0867 Wielgus, Susan P0842

340

Wiens, Gregory D. P0252, P0254 Wierzbicki, Heliodor P1026 Wiggans, George R. P0266, P0273,

P0279, W143, W150 Wight, Charlene P. W538 Wijoyo, Stanley P1129 Wildhagen, Henning W308 Wildschutte, Julia W131 Wileman, Ben P0264 Wilkerson, Curtis W094 Wilkins, Marc R. W635 Wilkinson, Michael J P0233, P0475,

W041 Willems, Glenda W809 Willerslev, Eske P0323, P0324 Willhoit, Megan E. P0027 Williams, Angela H. P0468 Williams, John P0313, W106, W108,

W109, W110, W111 Williams, Mark A. P0846 Williams, Paul P0539 Williamson, Robert J. W194, W894 Willis, John H. P1034 Wilson, Joan P0030 Wilson, L P1030 Wilson, Miranda L. P0302, W252 Wilson, Pip P1023 Wilson, Richard K W127 Wincker, Patrick P0597, W210, W473,

W795 Windham, Michael D. W190 Wing, Rod A. P0487, W449, W698, W860

Wingen, Luzie U. P0057, W709 Wingfield, Mike P0458 Wintermantel, William M. P0440 Winters, Ana W076 Wise, Aaron W358 Wise, Roger P0192, P0658, W607 Wisniewski, Michael P0875, W592 Wisniewski, Michael E. P0897 Witek, Agnieszka I P0844 Witek, Kamil P0844 Wittendorp, Jon P0030 Wojcieszek, Michal Krzysztof P0032, P0476

Wolf, Paul G. P1082, P1085, P1086 Wolfe, Cari P0279, W143 Wolfe, Marnin W124 Woltinge, Dennis P0940 Womack, James P0308, W106 Won, Jungyeon P0103, P0904, P0906, P0907

Wone, Bernard W. M. P0155 Wong, Debbie P0639 Wong, Eric A. W655 Wong, Gane Ka-Shu P1009, P1085,

P1086 Wong, Joan P0472, P1013, W436 Wood, Kelsey P0460, P0472, W436 Woodhouse, Margaret R. W629 Woody, Scott T W692 Woolliams, John A. W533 Worku, Mulumebet P0114

Worley, Kim W532 Worley, Kim C. P0073, W068, W139,

W360, W453, W861 Worren, Merete M. P0237 Wright, Chris P0031, P0046 Wright, Kalen Nicole P0124 Wright, Mark P0490 Wright, Matthew W566 Wright, Stephen I. W194, W894 Wrzaczek, Michael P1133 Wu, Cheng-Cang Charles P0069, W017, W350

Wu, Di P0969 Wu, Haifang P0077 Wu, Hao P1093, W625 Wu, Jianzhong P0496 Wu, Jie P0077 Wu, Jun P0905, P0908, P0909, P0910 Wu, Juyou P0905 Wu, Kati W603 Wu, Keyi P1191 Wu, Le-Shin P1151 Wu, Wei P0183, P0522 Wu, Xiao-Lin P0266, P1191 Wu, Xiaohui P0182 Wu, Xiaoming P0820, P0821, W105 Wu, Yong-pei P0501 Wu, Yuye W747 Wu, Zhe P0935 Wu, Zhiqiang P1052 Wubben, Martin P0462, P0465 Wuerschum, Tobias W608 Wüest, Rafael O. W797 Wulff, Brande W034 Wurah, Ornogeah P1188 Wurm, Yannick W524 Wyatt, Nathan A. P0650 Wyschetzki, Katharina W524 Wyse, Donald L. P0835 Xavier, Alencar P0689, P1180 Xavier, Mauro A. P0547 Xi, Kequan P0600 Xi, Zhenxiang P1086 Xia, Ling P0052 Xiang, Daoquan W035 Xiang, Ruidong W135 Xiao, Changchun W730 Xiao, Hua P0846 Xiao, Lichan W460, W474 Xiao, Qiying P0809 Xie, Fuliang P0022 Xie, Mingtang W358 Xie, Qingmei W643 Xie, Shaojun P0525 Xie, Zidian W582 Xin, Xu W888 Xin, Zhanguo P0555, P0561, W750 Xing, Yue P0278 Xiong, Zhongguo P1071 Xu, Dong P0060, P0694, P0696 Xu, Huaqin W196 Xu, Jiajia W266 Xu, Jiang P0077 Xu, Jianlong W777

Xu, Jie W629 Xu, Kejing P0135 Xu, Kenong P0895 Xu, Lingyang P0277, W141 Xu, Pei P0784 Xu, Rongyan W587 Xu, Ruo W607 Xu, Shizhong W386, W803 Xu, Steven S. P0575, P0607, P0651,

P0964, W016, W365 Xu, Weihui P0192 Xu, Wenwei W685 Xu, Xiangyang P0702 Xu, Xuewen P0354 Xu, Xun P1085 Xu, Yong W225, W229 Xu, Yunbi W772 Xu, Zhanyou P0961 Xue, Cheng P0909 Xue, Liang-Jiao P0976, W303 Xue, Qingwu P0625, P0634 Xue, Shiming P0600 Xun, Xu P0783 Yacoub, Haitham P0420 Yadgary, Liran W655 Yagi, Kouhei P0032 Yalcin Mendi, Yesim P1031, P1101 Yamada, Naohiro P0706 Yamada, Toshihiko P0026, W301, W563 Yamagishi, Michel E Beleza P0289,

P1170 Yamaguchi, Hirotaka P0847 Yamaguchi, Naoya P0713 Yamaguchi, Takuya P0495 Yamamoto, Eiji P0847 Yamamoto, Naoki P1161 Yamamoto, Takashi W734 Yamamoto, Toshio P0497 Yamane, Hisayo W333 Yamanouchi, Utako P0503 Yamazaki, Yukiko P0491, P0492 Yamini, K N. P0788 Yan, Jianbing W224, W775 Yan, Jun P1027 Yan, Liuling P0624 Yan, Wei P0410 Yan, Yiyuan P0417 Yanagui, Karina P0543 Yandell, Mark W524, W569 Yang, Dewei P0182 Yang, Guojun W869 Yang, Jessica P0773 Yang, Jinliang P0131 Yang, Jin Ok P1110, P1137, P1169 Yang, Jinzeng P0258 Yang, Kui P0354 Yang, Liguo W109 Yang, Ning P0410, P0417 Yang, Sam P0956 Yang, Shanshan P0873, W174, W419 Yang, Shouping P0202 Yang, Tae-Jin P0437, P1081 Yang, Tianfu P0345 Yang, Wei P0783

341

Yang, Xiaohan P0150, W310, W347 Yang, Xiping P0548, P0565, W811 Yang, Yang W083 Yang, Yinong W244, W702 Yano, Kentaro P0800, P0801, P0852,

P1122, P1125, P1141, P1161, P1166 Yano, Masahiro P0496, P0503, W170 Yano, Ryoichi P0712 Yao, Chengguo W791 Yao, Feng-Yong P0805 Yao, Jianbo P0246, P0248, P0250,

P0251, P0387 Yao, Jun P0242, P0245 Yao, Xiaoming P0274 Yao, Zhen P0227 Yaping, Feng P0303 Yaremcio, Barry P0165 Yasue, Hiroshi P1148 Yasumoto, Shuhei W734 Yazawa, Takayuki P0660 Ye, Changrong P0507 Ye, Heng W595 Ye, Juanying W584 Ye, Rosa P0069, W350 Ye, Xinfu P0182 Yeam, Inhwa P0861 Yeaman, Sam W317, W573 Yee, Muh-ching P1016 Yeh, Cheng-Ting P0183, P0522 Yelick, Katherine W713 Yen, Yang W464 Yendrek, Craig P0517, P0538 Yeo, Gene W. C25, P1149 Yeom, Seon-In P0863 Yepes, Marcela W178 Yerka, Melinda P0016 Yesiloglu, Turgut P1101 Yi, Guoqiang P0410 Yigit, Erbay P0043 Yildiz, Mehtap P1077 Yim, Hyung-Soon P0274 Yim, Won Cheol P0150, P0155, P0218, P1066, W347

Yin, Chuntao P0461 Yin, Hengfu W310, W347 Yin, Rui P0156 Yokota, Akiho P0939 Yokoyama, Koji P1122, P1125 Yonash, Nissim W715 Yonemaru, Jun-ichi P0496 Yoo, Ji Hye P0026, W563 Yoo, Shinjae P1138 Yoon, Duhak P0299 Yoon, Min-Young P0484 Yoon, Sangwoong W566 Yoon, SH P0325 Yordanov, Yordan W594 York, Larry M. P0057, W709 Yorke, James A W568 Yorke, James A. P0988, W569 Yoshida, Takuhiro P0154, P0685 Yoshinaga, Arata P1042, W293 Yoshioka, Terutaka W163

You, Frank M. P0160, P1039, P1043, W188, W291, W294, W460

You, Weiwei P0262, W043 You, Youngsook P1060 Youens-Clark, Ken P1119 Young, Amy P0327 Young, Carolyn W289, W298 Young, Nelson D. W097 Young, Nevin D. P0736, P0765, P0768,

P0770, P0771 Youssef, Helmy M. P0670 Yu, Chang Yeon P0026, W563 Yu, Deyue W003 Yu, Haowei W359 Yu, Jiang W135 Yu, Jianming P0563, P1010, P1193, W384, W747

Yu, Jie P0484 Yu, Jing C13, C14, P0888, P0953,

P0961, W874 Yu, John Z. P0961 Yu, Obarley W212 Yu, Qibin P0215 Yu, Qingyi W299, W812 Yu, Xiaoqing W747 Yu, Yeisoo P1081, W860 Yu, Yuan P0215 Yuan, Daojun W217 Yuan, Jiazheng P0734 Yuan, Jing P0094 Yuan, Jingwei P0410 Yuan, Luxia W474 Yuan, Yaowu W617 Yucebilgili Kurtoglu, Kuaybe P1005 Yue, Chaoyin P0135 Yue, Chengyan W335 Yue, Wei P0470 Yue, Xiangpeng P0276 Yun, ByoungKook P0484 Yun, Kil-Young P0822, P0823 Yun, Lan P1049 Yurchenko, Olga W086 Yurco, Julia M. P0314 Yusnizar, Yulnawati W109 Yuyama, Priscila Mary P0213 Zacarías, L. P0667 Zaccagna, Paolo P0578 Zaccaron, Alex Z. P0456 Zaccaron, Marcio L. P0456 Zaitlin, David P1083 Zaldei, Alessandro P0001, W316 Zale, Janice P0546, W814, W833 Zaluski, Rodrigo P0439 Zamir, Daniel P0855 Zander, Manuel Matias P0469 Zander, Mark W358 Zandkarimi, Hana P0194, W898 Zanella, Ricardo P0176, P0418 Zantinge, Jennifer L. P0600 Zarth, Sara P0358 Zatoń-Dobrowolska, Magdalena P1026 Zatserklyana, Oleksandra P0726 Zayed, Adel W264 Zayed, Amro P0439

Zazula, Grant W239 Zebu Genome Consortium, The W387 Zehnsdorf, Maik P0746 Zeisek, Vojtěch P0065 Zeisler, Viktoria P0912 Zembower, Nicole P0969, W304, W312 Zeng, Erliang P1190 Zeng, Liang P0702 Zeng, Peng P0702 Zeng, Qianchun P1093, W625 Zeng, Qifan P0241, P0245 Zeng, Xi P0169 Zeng, Zheng P0444 Zeng, Zixian P0842 Zerlotini, Adhemar P0290 Zhai, Zhiyang P0546, W814, W833 Zhan, Shing H P1086 Zhang, An P0805 Zhang, Baohong P0022 Zhang, Chengcheng W078 Zhang, Dapeng W114 Zhang, Dong W748 Zhang, Fan P0943 Zhang, Feng W600 Zhang, Fu-min W703 Zhang, Gengyun W009 Zhang, Guojie P0274 Zhang, Guorong P0625, P0634 Zhang, Guoyu P0943 Zhang, Haiying W225 Zhang, Hong-Bin P0156, P0319, P0964,

W016, W685, W848 Zhang, Hongtao P0187 Zhang, Hua P1109 Zhang, Huanmin P0416, W643 Zhang, Jianfeng P0773 Zhang, Jianwei W860 Zhang, Jiaren P0242, P0245 Zhang, Jie W225 Zhang, Jinbo W225 Zhang, Jing P0060 Zhang, Jisen W822 Zhang, Junli P0637, W393 Zhang, Lan W583 Zhang, Li P0752, W221 Zhang, Meiping P0156, P0964, W016, W685, W848

Zhang, Mingyi P0607 Zhang, Mingyue P0909 Zhang, Ning W700 Zhang, Peng P1071 Zhang, Qifa W386 Zhang, Qijun P0964, W016 Zhang, Shaoling P0905, P0908, P0909,

P0910 Zhang, Shujun W109 Zhang, Songhua P0113 Zhang, Wei P0607, W212 Zhang, Wenguang W137 Zhang, Wentao P0635 Zhang, Xiao-Ning P0802, W676 Zhang, Xiaoguo P0010, W814 Zhang, Xiaoyu W581 Zhang, Xin P0375

342

Zhang, Xinquan P0212 Zhang, Xinzhong P0625 Zhang, Yang P0964, W016, W685,

W848 Zhang, Yi-Jing P0152 Zhang, Yu P0354 Zhang, Yuan-Ming P1193 Zhang, Zhanyuan P1099 Zhang, Zhiwu P1158, P1193, W801 Zhao, Bingyu P0022, P0212, P0811 Zhao, Dongyan W870 Zhao, Hua P0026, W563 Zhao, Jing P0515 Zhao, Kangmei W078 Zhao, Meixia P0705, W755 Zhao, Patrick Xuechun C16, C20, P0688,

P0794 Zhao, Pengshan P0671, W880 Zhao, Wei P0274 Zhao, Xinghua W190 Zhao, Yiqiang P0406 Zhao, Zhenhua P0411 Zhebentyayeva, Tatyana P0969, P0995,

W312 Zheng, Chunfang P1019, W180 Zheng, Peizhong P0523 Zheng, Ping C13, C14, P0763, P0888,

P0953, W162 Zheng, Xiao-ming W703 Zheng, Xiuting P0956 Zheng, Yi W229 Zhong, Gan-Yuan P0895 Zhong, Shaobin P0680 Zhou, Bo W606 Zhou, Huaijun P0397, P0411, P0425,

W535, W649, W770, W847 Zhou, Hui P0098 Zhou, Peng P0765, P0768, P0771 Zhou, Ran W008, W720 Zhou, Shiguo W139 Zhou, Xiang W826 Zhou, Xin P0707 Zhou, Yongqiang P0364 Zhou, Zeyu W357 Zhou, Zhou P0710, P0732 Zhu, Feng P0175 Zhu, Jian-Kang W242 Zhu, Jianrong P0098 Zhu, Jun W848 Zhu, Lan W078 Zhu, Tingting P0574, W188, W460,

W474 Zhu, Xianwen P0607 Zhu, Xinguang P0126, W342 Zia, Muhammad Anjum P0946 Ziegler, Greg W746 Zielinski, Kelsey P0552 Ziems, Laura Ashlee P0678 Zieve, Jacob C19, W311 Zimin, Aleksey P0988, W106, W524,

W568, W569, W570 Zimmermann, Niklaus E. W797 Zinkgraf, Matthew W307 Zinkgraf, Matthew S. W306, W742

Zogibi, Onizan Godian P0451 Zohar, Matat P0901 Zohren, Jasmin P1185, W313 Zorilla, Jassmine W070, W679 Zou, Hongda P0611 Zuccolo, Andrea W326 Zumstein, Kristina W356 Zuo, Bo P0174 Zuo, Fuyuan W109 Zuo, Tao P1012 Zurn, Jason D. P0644 Zwer, Pamela P0682, W536 Zynda, Greg P1181

343

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Networkingcards byQuartzy

Networkingcards byQuartzy

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PosterPresentationPickup

January 10-14, 2015Plant & Animal Genome XXIII Conference

Town & Country Resort & Convention CenterGrand Exhibit Hall

San Diego, CA

EN

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AGUACULTURE POSTER SESSION

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January 10-14, 2015Plant & Animal Genome XXIII Conference

Town & Country Resort & Convention CenterLower Exhibit Hall

San Diego, CA

345

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Documents

FINAL PROGRAM, ABSTRACT & EXHIBIT GUIDE · Plant & Animal Genome XXIII Registration & Meeting Schedule . Registration - ATLAS FOYER . Friday January 9 12:00pm - 9:00pm . Saturday