Institute of Biotechnology National Ilan University Master
70
國立宜蘭大學生物技術研究所 碩士論文 Institute of Biotechnology National Ilan University Master Thesis 擬魚化抗體表現載體的構築 Construction of fishnized antibody expression vector 指導教授:賴裕順 博士 Yu-Shen Lai, Ph. D. 研究生:呂柏毅 Po-Yi Lu 中華民國九十七年七月
Institute of Biotechnology National Ilan University Master
II
Abstract
Nervous necrosis virus (NNV) is one of the most serious fish
pathogens, which infects sea
water fish fry, causing mortality as high as 90%. The first case of
NNV-infection was reported in
Japan in 1990, currently there is no effective method to prevent
this virus infection. In Taiwan,
the first case of NNV infection was reported from grouper fishery
in 1994, which caused 90%
mortality of fish fry. Therefore, the purpose of this study is to
elucidate the pathogenesis
mechanism of NNV and develop an effective method for preventing and
control NNV viral
infection.
Immune gene therapy is one of the safety and efficient
biotechnological methods to prevent
virus infection. Earlier, only mouse monoclonal was developed,
however, that caused immune
system responses in human body. In 1984, humanized antibodies have
been developed by
combining the antigen binding site of mouse antibody with the Fc
portion of human antibody
through recombinant DNA technology. These chimeric humanized
antibodies have no side
effects and eliminate the possible toxicity. Moreover, the
immune-related cells would be
activated to strengthen the human immune system that ultimately
results in significant specific
protection against infections. In this study try to apply the idea
and technology of humanzied
antibody to grouper fish study. Genetic engineering methods we
applied to create a fishnized
antibody, by combining the antigen binding site of mouse monoclonal
antibody and the Fc
portion of the fish IgM.
In this study, we success in fishnized antibody construction, the
total length is 2.4 kb which
combined with the 1.4 kb antigen binding site of mouse monoclonal
antibody and 1 kb of the Fc
portion of the fish IgM. This plan purpose hopes to draft the
setting-up of fishnized antibody
technology, to develop a method or vaccine to prevent NNV infection
and to study the
regulational mechanisms of fish's immune system. Three of mouse
hybridoma, fishnized
antibody and single-chain Fv antibody. Finally to develop a novel
fish disease prevention and
therapeutical methods. Finally, we hope to develop a simple,
innovative, perfect, and effective
prevention approaches for disease prevention and further
research.
III
FvFv
(papain) Fab
(fragment of antigen binding) (VL +CL) (VH +CH1)
phage surface display expression system B
(HBsAg) Fab Fab B
disulfide-stabilized Fv fragment (Jia, 2008) Fab
(cross
4
cDNA cDNA
female Lewis rats
cDNA Ig-like motif fragment
cDNA
()
Grouper IgM heavy chain constant region plasmid Fv plasmid (
)
()
Bromophenol blue (Merck)
Calcium Chloride (J.T.Baker)
1,4-Dithiothreitol (Merck)
dNTP (Yeastern Biotech)
High-Range Rainbow Molecular Weight Markers (GE®)
Isopropanol (Sigma)
Kanamycin (Sigma)
Ligase buffer (10 ×) (RocheNew England BioLabs®)
Methanol (Mallinckrode)
NEB buffer 2 (10 ×) (New England BioLabs®)
NEB buffer 4 (10 ×) (New England BioLabs®)
NEB buffer 1 (10 ×) (New England BioLabs®)
NBT /BCIP (Roche)
Oligo dT (Invitrogen)
Phenol (Amresco®)
RT buffer (Invitrogen)
17
Yeast extract (BactoTM)
(BioDoc-ItTM System)
(Thermo HeλIOSβ)
(Lab Tech Lotplate Stirrer LMS-1003)
(MiNi-PROTEAN 3 Cell)
(Pantech 5100 Spire Mixer )
(Labnet VX-100 Vortex Mixer )
(METTLER TOLEDO PB602-S)
(Thermo Genesys 10)
1 × 107 (HyBridoma 56, HB 56)
15 ml 180 × g 5 10 ml PBS
180 × g 5 1 ml PBS
1.5 ml 180 × g 5 UltraspecTM RNA 1 ml
vortex 5 200 μl chloroform 15
5 12,000 × g 15 4 300
μl isopropanolvortex 30 12,000 × g 1 4 75
1 ml vortex 30 12,000 × g 30 4 75 1
ml vortex 30 12,000 × g 30 412,000 × g 3
50 μl DEPC-H2O
RNA
()RNA (Reverse Transcription)
RNA 5 μg DEPC-H2O 18 μl 1 μl oligo dT (1 μg/μl)
1 μl dNTP (10 mM) 20 μlvortexspin down 65
5 5 5 μl RT buffer1 μl RNAin (RNAase
inhibitor)1 μl RTasevortexspin down 37 2 (
42 1 ) cDNA
() (primer)
HB 56 light chain IgM Fc
(CH2-CH4)chimeric heavy chain 7
HB56 heavy chain to pET 20b-grouper IgM CH2-CH4 plasmid forward
primer (Nde I)GGGAAT
21
TCCATATGCAGGCCCAACTGCAGCAGCCTGGG
HB56 heavy chain to pET 20b-grouper IgM CH2-CH4 plasmid reverse
primer (Hind III) : CCCA
AGCTTTGTACATATGCAAGGCTTACA
HB56 light chain to pET 23a forward primer (Nde I) :
GGGAATTCCATTGGACATTGTGATG
ACCCAGTCTCAG
HB 56 light chain to pET 23a reverse primer (Hind III)
:CCCAAGCTTACACTCATTCCTGTT
GAAGCTCTT
IgM constant region for CH2-CH4 to pET20b forward primer (Hind III)
: CCCAAGCTTATATAT
CAGTTGCCAACTCTTAAAGTA
IgM constant region for CH2-CH4 to pET 20b reverse primer (Xho I) :
CCGCTCGAGCTGGGCC
TTGCACGTTTCAGGGATGTT
chimeric heavy chain to pSecTaq2A forward primer (Asc I) :
TTGGCGCGCCAGGCCCAACTG
CAGCAGCCTGGG
chimeric heavy chain to pSecTaq2A reverse primer (Xho I) :
CCGCTCGAGGCTGGGCCTTGC
ACG TTTCAGGGATGTT
HB 56 light chain to pSecTaq2B forward primer (Hind III) :
CCCAAGCTTGACATTGTGATG
ACCCAGTCT
HB 56 light chain to pSecTaq2B reverse primer (Xho I) :
CCGCTCGAGGACACTCA
TTCCTGT TGAAGCTCTT
Chimeric heavy chain to p-N1-pSecTaq2B HB 56 light chain plasmid
forward primer (Kpn I) :
CGGGGTACCCGA TGTACGGGCCAGATATACGCG
Chimeric heavy chain to p-N1-pSecTaq2B HB 56 light chain plasmid
reverse primer (Not I) :
ATAAGAATGCGGC CGCTTACTGGGCCTTGCACGTTTC
HB 56 light chain to p-EGFP-N1 forward primer (Nhe I) :
CTAGCTAGCATGGAGACAGACA
CACTCCTGCTA
HB 56 light chain to p-EGFP-N1 reverse primer (EcoR I) :
CCGGAATTCCAGCATGCCTGC
TATTGTCTTCCC
22
50 μl template
DNA (0.05 μg)dNTP (0.2 mM)forward primer (0.1 μΜ)reverse primer
(0.1 μΜ)1 μl (5
U/μl) Bio Taq DNA polymerase5 μl 10X PCR buffer (1.5 mM
MgCl2)
50 μl
()PCR
95 10 95 1 55 1 72 1-2 (
) 35 72 10 (extension)
()
1 (1 g +99 ml TAE buffer)
55
DNA DNA loading dye 1:5
2 100 35 50 μg/ml
ethidium bromide 10
()PCR (VIOGENE PCR-MTM clean up kit)
PCR 0.5 ml PX buffer column 2
ml 10,000 × g 1 0.5 ml WF buffer column
10,000 × g 1 0.7 ml WS buffer (100) column
10,000 × g 1 column 10,000 × g 3
column 1.5 ml 50 μl column
2 10,000 × g 2
()DNA (VIOGENE Gel-MTM Kit)
DNA 1.5 ml
23
0.5 ml GEX buffer 60 20 2 invert
0.7 ml column
2 ml 10,000 × g 1 ( 0.7 ml )
0.5 ml WF buffer column 10,000 × g 1 0.7 ml WS
buffer ( 100 ) column 10,000 × g 1
column 10000 × g 3 column 1.5 ml
50 μl column 2 10,000 × g 2
27
grouper IgM heavy chain
grouper IgM CH2-CH4 1 kb
pET 20b grouper IgM CH2-CH4 pET 20b
Hind III Xho I digest
grouper IgM CH2-CH4 pET 20b
Hind III Xho I digest pET 20b-grouper IgM CH2-CH4 ligation
grouper
IgMCH2-CH4 pET 20b
pET 20b-chimeric heavy chain (heavy chain of HB56 Fab -grouper IgM
CH2-CH4)
HB56 RNA
HB56 RNA cDNA
HB56 Fab heavy chain 0.7
kb pET 20b-grouper IgM CH2-CH4
Nde Hind III digest
HB56 Fabheavy chain pET 20b-grouper IgM
CH2-CH4 Nde Hind III digest pET 20b-
heavy chain of HB56 Fab-grouper IgM CH2-CH4 ligation HB56
Fabheavy
chain pET 20b-grouper IgM CH2-CH4
pET 23a-HB56 light chain
HB56 RNA
HB56 RNA cDNA
HB56 light chain (LC) 0.7 kb pET
28
23a Nde Hind III digest
HB56 light chainpET 23a
Nde Hind III digest pET 23a-HB56 light chain ligation
HB56 light chain pET 23a
pSecTaq2A-chimeric heavy chain (heavy chain of HB56 Fab -grouper
IgM CH2-CH4)
pET 20b-chimeric heavy chain
chimeric heavy chain 1.7 kb pSecTaq2A
Asc I Xho I digest
pSecTaq2A signal sequence CMV promoter
chimeric
heavy chainpSecTaq2A Asc I Xho I
digest pSecTaq2A-chimeric heavy chain ligation chimeric heavy
chain
pSecTaq2A
pET23a-HB56 light chain
HB56 light chain 0.7 kb pSecTaq2B
Hind III Xho I digest pSecTaq2B
signal sequencepoly A site
HB56 light chainpSecTaq2B
Hind III Xho I digest pSecTaq2B-HB56
light chain ligation HB56 light chain pSecTaq2B
29
signal sequencepoly A sitepSecTaq2B-HB56 light chain 1.2
kb pEGFP-N1 Nhe I EcoR I digest
signal sequencepoly A site
pSecTaq2B-HB56 light chain pEGFP-N1
Nhe I EcoR I digest pEGFP-N1-pSecTaq2B-HB56 light chain
ligation
signal sequencepoly A sitepSecTaq2B-HB56 light chain
pEGFP-N1
p-N1-pSecTaq2B-HB56 light chain -pSecTaq2A chimeric heavy chain
(heavy chain of HB56
Fab -grouper IgM CH2-CH4)
pSecTaq2A-chimeric heavy chain
signal sequenceCMV promoterpSecTaq2A-chimeric heavy chain
2.5 kb pEGFP-N1-pSecTaq2B-HB56 light chain
Kpn I Not I digest (pEGFP-N1-pSecTaq2B-HB56 light chain
digest EGFP)
signal sequence CMV promoter pSecTaq2A-chimeric heavy chain
p-N1-pSecTaq2B-HB56 light chain Kpn I
Not I digest p-N1-pSecTaq2B-HB56 light chain-pSecTaq2A chimeric
heavy chain ligation
signal sequenceCMV promoter pSecTaq2A-chimeric heavy chain
p-N1-pSecTaq2B-HB56 light chain
p-N1-pSecTaq2B-HB56 light chain-pSecTaq2A-chimeric heavy
chain
pSecTaq2B-HB56 light chain pSecTaq2A-chimeric heavy chain (heavy
chain of
HB56 Fab-grouper IgM CH2-CH4) HB56 light chain
chimeric heavy chain
T101 cutaneous T cell lymphoma (CTCL) chronic lymphocytic
leukemia (CLL) human anti-mouse immunoglobulin (mIgG)
(Sears, 1984; Reynolds,
1989; Shawler, 1985; Jaffers, 1986)
Fv 2005
phage display library B-LyS (B-lymphocyte stimulator)
Fv C305C305 B-LyS (BCMA) B-LyS
B
C305 B-LyS C305
(Liu, 2005) 2006 CTLA4 (Cytotoxic T lymphocyte associated
Ag-4) Fv (pHEN1) CTLA4
Fv CTLA4 APC CD80/CD86 T
31
(Chen, 2006) 1998
p17
p17 cDNA
cDNA Fv Fv T
T T
(Tewari, 1998)
(assemble) (Tavladoraki, 1993; Benvenuto, 1995)
N901
(Roguska, 1994) 2008 B
(H67) HuS10HuS10 B S protein
HuS10 B
B B
1988
immunoblotting G (envelope
glycoprotein)N (nucleocapsid related protein)M1 M2 (matrix proteins
1 2)
2000 model (viral
hemorrhagic septicemia virus, VHSV) Fv Fv
envelope glycoprotein in vitro Fv
DNA
DNA
(Ichthyophthirius multifiliis)
Fv
Fv Fv
33
1.7 kb chimeric heavy chain (heavy chain of HB56 Fab-grouper IgM
CH2-CH4)
0.7 kb HB56 light chain (LC)
Fab IgM Fc Fab
IgM Fc
IgM Fc
Fab
Fc
34
M V 1 2 3 4 5 6 7 8 9 10 11 12 13 14
(bp)
1.5 K
CH2-CH4
Lane V: pET 20b
Lane 1-14: pET 20b-grouper IgM CH2-CH4 ligation plasmid
19121314151618
202324252729
35
500
250
1 Hind III Xho I 12 24
pET20b grouper IgM CH2-CH4 1 kb
Lane M : marker
36
(bp)
1.5 K 1 K
1 pET 20b grouper-IgM CH2-CH4 plasmid
HB56 Fab heavy chain
Lane M : marker
Lane V: pET 20b grouper-IgM CH2-CH4 plasmid
Lane 1-7: pET 20b heavy chain of HB56 Fab-grouper IgM CH2-CH4
ligation plasmid 1235
6910
500
250
1 Nde Hind III 1910
pET 20b grouper-IgM CH2-CH4 plasmid HB56 Fab heavy
chain 0.7 kb
Lane M : marker
Lane 1-3: digest pET 20b heavy chain of HB56 Fab-grouper IgM
CH2-CH4 ligation plasmid 19
10
chain (LC)
Lane M : marker
Lane 1: pET 23a-HB56 light chain ligation plasmid 27
39
500
250
1 Nde Hind III 27
pET23a HB56 light chain (LC) 0.7 kb
Lane M : marker
Lane 1: digest pET 23a-HB56 light chain ligation plasmid 27
40
M V 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 (bp)
4 K 3 K
2.5 K 2 K
250
heavy chain -1
Lane M : marker
Lane V: pSecTaq2A
Lane 1-15: pSecTaq2A-chimeric heavy chain ligation plasmid
12345678910
1112131415
41
(bp)
1.5 K 1 K 750 500
M V 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
1 pSecTaq2A chimeric
heavy chain -2
Lane M : marker
Lane V: pSecTaq2A
Lane 1-15: pSecTaq2A-chimeric heavy chain ligation plasmid
16171819202122
2324252627282930
42
M 1 2 3 4 5 6 7 8 9 10 11 12
(bp)
500
250
1 Asc I Xho I 23678
111718202526 pSecTaq2A chimeric heavy chain
1.7 kb
Lane M : marker
Lane 1-12: digest pSecTaq2A-chimeric heavy chain ligation plasmid
236781117
1820252627
43
(bp)
light chain (LC)
Lane M : marker
Lane V: pSecTaq2B
Lane 1-5: pSecTaq2B-HB56 light chain ligation plasmid
711161820
44
4 K 3 K
2.5 K 2 K
250
1 Hind III Xho I 111620
pSecTaq2B HB56 light chain (LC) 0.7
kb
Lane M : marker
Lane 1-4: digest pSecTaq2B-HB56 light chain ligation plasmid
11161820
45
M V 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
(bp)
pSecTaq2B-HB56 light chain (LC) -1
Lane M : marker
Lane V: pEGFP-N1
Lane 1-15: pEGFP-N1-pSecTaq2B-HB56 light chain ligation plasmid
12345678
9101112131415
46
M V 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 (bp)
4 K 3 K
2.5 K 2 K
1 pEGFP-N1
pSecTaq2B-HB56 light chain (LC) -2
Lane M : marker
Lane V: pEGFP-N1
Lane 1-15: pEGFP-N1-pSecTaq2B-HB56 light chain ligation plasmid
161718192021
222324252627282930
47
M 1 2 3 4 5 6 7 8 9 10 11 12 13 14
(bp)
1 K 750 500
1 Nhe I EcoR I 2567
9101415161722252729 pEGFP-N1 pSecTaq2B-HB56
light chain (LC) 1.2 kb
Lane M : marker
Lane 1-14: digest pEGFP-N1-pSecTaq2B-HB56 light chain ligation
plasmid 2567910
1415161722252729
48
2.5 K 2 K
1 pEGFP-N1-pSecTaq2B-HB56 light chain (LC) plasmid
pSecTaq2A-chimeric heavy chain
Lane M : marker
Lane 1: p-N1-pSecTaq2B-HB56 light chain-pSecTaq2A-chimeric heavy
chain ligation plasmid 1
49
2.5 K
2 K
1.5 K
1 K
750
1 Kpn I Not I 1
pEGFP-N1-pSecTaq2B-HB56 light chain plasmid
pSecTaq2A-chimeric
heavy 2.5 kb
Lane M : marker
plasmid 1
IgM Fc ) CMV
promoter signal sequence
51
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