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Investigation of portal vein blood flow in cirrhotic portal hypertension using computer-based and physical modelling methods Svetla Bogomilova Petkova For the degree of Doctor of Phylosophy Swinburne University of Technology Melbourne, Australia 2008

Investigation of portal vein blood flow in cirrhotic …...I, Svetla Bogomilova Petkova, declare that this thesis: Contains no material which has been accepted for the award to the

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Page 1: Investigation of portal vein blood flow in cirrhotic …...I, Svetla Bogomilova Petkova, declare that this thesis: Contains no material which has been accepted for the award to the

Investigation of portal vein blood flow in cirrhotic portal

hypertension using computer-based and physical modelling

methods

Svetla Bogomilova Petkova

For the degree of Doctor of Phylosophy

Swinburne University of Technology

Melbourne, Australia

2008

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Abstract

Portal hypertension commonly accompanies liver cirrhosis and complicates the

condition by adding extra risk to the patient survival chances.

This thesis investigates the blood flow through the portal vein in portal

hypertension using a combination of physical experiments and computer

modelling and simulations. Tissue culturing techniques are discussed and a

novel design bioreactor is developed to accommodate the specific requirements

of such a system within the in vitro growth of a blood vessel on biodegradable

scaffold. That bioreactor is used for the physical experiments and Laser Doppler

Anemometry measurements and can be adopted for a range of tissue engineering

purposes. Computational Fluid Dynamics using commercially available software

to create non-Newtonian flow representations in idealised portal vein model

with and without additional obstructions is shown to have good agreement with

the experiments. The model provides a range of useful and otherwise difficult to

get information about the flow of whole blood and each blood cells group in

terms of velocity, particle paths, pressure, strain, wall shear stress and

combinations of those parameters.

The research presented in this work shows the impact of additional obstructions

within the portal vein on the flow, and the need to further investigate the

apparent impact the different blood cell types (their size and concentration) have

on the overall flow pattern. It is important to understand the factors impacting on

the flow as they are a determining factor in patient with liver cirrhosis and portal

hypertension survival chances.

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Acknowledgements

This research was possible thanks to the work, dedication and help of the following people (and the list is not possible to be completed):

My lecturers and course co-ordinator during my Masters Degree and work colleagues thereafter, who taught me the basis of what I know now, and showed me that I can achieve anything if I work hard enough.

Dr. Enzo Palombo as my Co-ordinating supervisor who managed to stay positive and believe in me even when I didn’t.

Dr. Tony Barton, my second supervisor for his critical review of my work and constant questioning.

Peter Robb and the team in the Engineering workshop for helping me design and manufacture the stainless steel parts of the bioreactor.

Andrew Moore for his help with polymers and biomaterials and his “home-made” scaffolds. Andy in IRIS and my friend Tony Acquadro for their help learn how to operating the LDA.

Ian Birchall for introducing me to the great people in Melbourne Royal Hospital (Thanks to Prof. Robert Gibson), for giving me support and believing I can do the work.

Alamgir Hossain, a fellow research student, who helped with the development of the computer model and taught me how to utilise the available software, and for his friendship. Dr. Jamal Naser, for his supervision and advice related to the CFD component of this thesis. And for saying “it’s possible, yes, it’s do-able”.

My fellow postgraduate research students, my friends, who constantly told me to keep going and were there to support me (and remind me that live is waiting for me past the completion line).

The Swinburne Student Union and Swinburne University Postgraduate Association, not only for their support, but for giving me a different area to work on (student rights and representation) while writing my thesis. This goes especially to Sally Skinner, Terry Eyssense and Wayne Cupido for their guidance and help during difficult times.

To all my friends, who have been waiting for years to have a dinner with me or go to the movies, your sacrifice is appreciated and I’ll be making it up to you.

And lastly, but definitely not least, to my family, to all the people who mean the World to me and live thousand of miles away, thank you for allowing me the time to complete my research and supporting me from so far away.

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I, Svetla Bogomilova Petkova, declare that this thesis:

Contains no material which has been accepted for the award to the

candidate of any other degree or diploma;

To the best of my knowledge contains no material previously published

or written by another person except where due reference is made in the

text of the thesis; and

Where the work is based on joint publications, discloses the relative

contributions of the respective workers or authors.

There has been no professional editing on this thesis

The publications resulting from this work have been identified and their

prior publication has been acknowledged.

7th February 2008

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Table of Contents

CHAPTER 1 Introduction

1.1. Background 1

1.2. Aims of the research 3

1.2.1. Expected contribution of this research 4

1.2.2. Limitations of this research 4

1.3. Structure of the thesis 5

1.3.1. Thesis outline 5

1.3.2. Steps used in this research 7

1.4. Practical contributions to knowledge 7

CHAPTER 2 Literature Review

2.1. Anatomy and Physiology of the Liver – brief introduction 9

2.1.1. Introduction to the basics liver zoning 11

2.1.1.1. Structure of the liver 11

2.1.1.2 Structure of blood vessels 13

2.1.2. The effects of Cirrhosis on Liver tissue 15

2.1.3. Cirrhosis as a disease 16

2.1.4. Clinical Problems associated with Cirrhosis 16

2.1.5. Methods of dealing with Cirrhotic Liver 18

2.1.6. Direction of blood flow in Cirrhosis 19

2.1.7. Regeneration of the Liver 20

2.1.8. Factors for scar-production and for regeneration 21

2.2. Portal Hypertension 22

2.2.1. Nature of Portal Hypertension 22

2.2.1.1. Intrahepatic portal hypertension 24

2.2.1.2. Prehepatic portal hypertension 25

2.2.1.3. Posthepatic portal hypertension 26

2.2.2. Ways for overcoming portal hypertension or its complications 27

2.2.3. Effects of portal hypertension in some liver disease treatments 28

2.2.3.1. Partial liver transplantation 28

2.2.3.2. Orthotopic liver transplantation 29 iv

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2.3. Blood flow through the Liver 29

2.3.1. Portal Circulation 30

2.3.2. Reverse flow 33

2.3.3. Spontaneous reverse flow and arguments against its existence 34

2.3.4. Streamline flow 36

2.3.5. Hepatic artery and portal vein blood flow relationship 37

2.4. Determining and regulation the Liver blood flow 38

2.5. Shunting 39

2.5.1. Nature of the shunts occurring during portal hypertension 40

2.5.2. Types of shunts depending on shunted blood volume 41

2.5.3. Transjugular Intrahepatic Portosystemic Shunt (TIPS) 45

2.5.3.1. Nature of TIPS – surgical procedures 46

2.5.3.2. Complications of portal hypertension treated with TIPS 47

2.6. Other treatments and methods for overcoming portal hypertension 51

2.6.1. Mechanical devices 51

2.6.2. Bioartificial Liver 62

2.6.2.1. Bioreactors – types, principles and some problems 63

2.6.2.2. Hollow fibre bioartificial liver 64

2.6.2.3. Fluidised Bed Bioartificial Liver 65

2.6.3. Non-shunt operations 65

2.6.4. Sclerotherapy 66

2.6.5. Balloon Tamponade 66

2.7. Medical conditions associated with Portal Hypertension 66

2.7.1. Complications of Liver Transplantation 67

2.7.1.1. Shunts 67

2.7.1.2. Stenosis 67

2.7.1.3. Embolization of the portal vein or one of its branches 68

2.7.2. Hepatopulmonary syndrome 69

2.7.3. Variceal bleeding 69

2.7.4. Hepatic hydrothorax 70

2.7.5. Portal hypertensive gastropathy 70

2.7.6. Porto-pulmonary hypertension 71

2.7.7. Other liver disease conditions 72

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2.8. Vessel blockages and thrombosis 73

2.9. Cell Adhesion 77

2.9.1. Terminology 78

2.9.1.1. Tissue Engineering 78

2.9.1.2. Importance of the endothelial cell lining of blood vessels 80

2.9.2. History of cell adhesion and cell seeding 81

2.9.3. Methods of cell seeding and cell adhesion 82

2.9.3.1. Endothelial cell seeding 82

2.9.3.2. Cell differentiation 83

2.9.3.3. Possible improvement in endothelial cell growth 84

2.9.4. Difference between static and dynamic conditions for cell seeding

and cell adhesion 85

2.9.4.1. Electrostatic endothelial cell seeding method 87

2.9.4.2. Dynamic cell seeding technique 87

2.10. Scaffold requirements 88

2.11. Scaffolds and scaffold materials 90

2.11.1. Comparison of materials 92

2.11.2. Techniques for manufacturing scaffolds 97

2.11.3. Dacron prostheses 98

2.11.4. Non-woven scaffold 98

2.11.5. Modified ePTFE and PTFE 99

2.11.6. Biodegradable scaffold 99

2.11.7. Other types of scaffolds 100

2.12. Coating of biomaterials 101

2.12.1. Coating the material with a layer of endothelial cells 101

2.12.2. Coating with fibronectin and E-selectin 103

2.12.3. Carbon-deposited surface and Diamond-like Carbon coating 104

2.12.4. Coated with grafted adhesion peptides 105

2.12.5. Encapsulation of the graft 105

2.13. Why pulsatile flow is important 105

2.13.1. Waveforms and pulsatility 106

2.13.2. Endothelial cells – graft relationship 108

2.13.3. Effect of hemodynamics on endothelial cells 108

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2.13.4. Vessel compliance 109

2.14. Other methods and approaches for addressing the problems of cirrhosis

of the Liver and vessel transplant in general 110

2.15. Future work 112

2.16. Conclusions 113

CHAPTER 3 Commonly used methods and parameters in blood flow modelling and

thesis specific used theoretical and experimental methods

3.1 Introduction 114

3.1.1. Methods for measurement of portal blood flow 114

3.1.2. Generic flow measurements 117

3.1.2.1. Electromagnetic Flowmeters 117

3.1.2.2. Ultrasonic Methods 117

3.1.2.3. Electrical Impedance Techniques 119

3.1.2.4. Tracer Techniques 119

3.1.3. Flow measurements based on pressure gradients, flow in other

blood vessels, or numerical estimation. 119

3.1.3.1. Portal vein blood flow measurement based on pressure gradient

between portal and hepatic veins 121

3.1.3.2. Measurements based on pressure drop within the blood vessel 121

3.1.3.3. Volume flow measurements 122

3.1.3.4. Measurements of Portal Vascular Resistance 122

3.1.3.5. Measurements of the Hepatic and Portal Venous Pressure 123

3.1.3.6. Relationship between vessel diameter and velocity 124

3.1.3.7. Measurement of Portal blood flow 124

3.1.4. Doppler flowmetry 125

3.2. Laser Doppler Anemometer 125

3.2.1. Principle of Laser Doppler Anemometry 125

3.2.2. Models used for LDA 130

3.3. Computational Fluid Dynamics (CFD) Modelling 133

3.3.1. Non-Newtonian flow 137

3.3.2. Numerical simulations and modelling 137

3.3.3. Limitations of CFD and future work 139

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3.3.4. FLUENT model used in this thesis 140

3.4. Blood flow properties 141

3.4.1. Rheological properties of human blood 141

3.4.1.1. Properties of blood in patients with chronic liver disease 147

3.4.1.2. Non-Newtonian properties of blood 147

3.4.1.3. Blood viscosity 148

3.4.1.4. Blood cell behaviour as suspended particles in the blood flow 149

3.4.2. Newtonian flow 150

3.4.3. Factors governing portal vein hemodynamics 150

3.4.4. Specific factors impacting on branched vessels 151

3.4.5. Hemodynamics of vascular grafts 153

3.4.6. Impact of portal hypertension on vascular hemodynamics 153

3.5. Theoretical reasoning for the proposed model 157

3.5.1. Laminar flow of blood 157

3.5.2. Basic laws governing the cardiovascular system 158

3.5.3. Fluid mechanics definitions 160

3.5.4. Commonly used assumptions 160

3.5.5. Additional effects impacting the circulation 162

3.5.6. Wave propagation in the cardiovascular system 163

3.5.6.1. Pulsatile flow 164

3.5.6.2. Importance of hemodynamics on modelling of blood flow 166

3.5.7. Tissue culturing studies 166

3.5.7.1. Tissue culture methods 166

3.5.7.2. Preparation and test studies 167

3.6. LDA experimental set-up 169

3.6.1. Bioreactor and LDA 169

3.6.2. Fluid and model vessel 170

3.6.3. Pump and reservoirs 171

3.7. Ideas for future work 171

3.7.1. Heating of fluid 171

3.7.2. Developing the model vessel from different material 172

3.7.3. Blood flow modelling 172

3.8. Conclusions of the Chapter 172

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CHAPTER 4 Bioreactor

4.1. Introduction 174

4.1.1. The use and historical development of Bioreactors 174

4.2. Types of Bioreactors 176

4.2.1. Tissue culture static bioreactors 176

4.2.2. Extracorporeal bioreactor systems – some examples 177

4.3. Development of the Bioreactor used in this study 177

4.3.1. The initial idea and design 177

4.3.1.1. Parallel plate bioreactor 178

4.3.1.2. Pulsatile Bioreactor – where the idea came from 180

4.3.1.3. Another example of pulsatile bioreactor – aortic heart valve growth 182

4.3.2. First prototype of the Bioreactor 183

4.3.3. New, simplified Bioreactor 185

4.4. Requirements of a bioreactor for tissue culture of blood vessels 191

4.5. Advantages and disadvantages of the bioreactor 195

4.5.1. Advantages of the new bioreactor design 195

4.5.2. Disadvantages of the new design 197

4.6. Future work and optimization of the device 197

7. Conclusion 198

CHAPTER 5 Measurements, Simulations and Results

5.1. Geometry and Grid generation 200

5.1.1. Grid generation 200

5.1.2. Scaling 201

5.2. Model assumptions 201

5.2.1. Geometry 201

5.2.1.1. 3-D geometry 201

5.2.1.2. Size, diameter and branching 202

5.2.2. Flow 202

5.2.2.1. Common flow assumptions 202

5.2.2.2. Observations 203

5.3. Benefits and limitations 204

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5.4. Visualisation 205

5.5. Mathematics and parameters 209

5.5.1. Continuity and Momentum Equations 210

5.5.2. Viscosity equations 211

5.6. FLUENT models: simulation results 214

5.6.1. First model visualization 214

5.6.2. Comparison between models with and without obstructions 219

5.6.3. FLUENT comparisons of different velocities 224

5.6.3.1. Velocity magnitude 225

5.6.3.2. Visualization opportunities with FLUENT 226

5.6.4. Particle tracking 230

5.6.5. Newtonian verses non-Newtonian flow 233

5.6.6. Idea for portal vein shunt 239

5.6.6.1. Non-Newtonian flow visualization 240

5.6.6.2. Newtonian flow visualisation 243

5.7. Visualisation of LDA measurements 244

5.7.1. Measurements and different visualisation opportunities 244

5.7.2. Comparison between visualization using different vector lengths 250

5.7.3. Comparison between normal and obstructed models 252

5.7.4. The most appropriate vector length 254

5.8. Comparison between CFD and LDA models 256

5.9. Conclusions 262

CHAPTER 6

Conclusion 264

Future work 268

References 271

Appendix 1 i

Appendix 2 xi

Appendix 3 xvii

Appendix 4 xviii

Appendix 5 xxi

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List of Figures CHAPTER 2 Literature Review

Figure 2.1. Anterior and Posterior views of the Human Liver 10

Figure 2.1.1.1.1.Structure of the liver 12

Figure 2.1.1.1.2. Blood vessel network within a hepatic lobule 13

Figure 2.3.1.1. Human blood circulation 30

Figure 2.3.1.2. Portal circulation and systemic circulation anastomosis 31

Figure 2.3.1.3.Portal circulation with most small intestines removed

and the liver turned upwards and backwards. 32

Figure 2.3.1.4.Normal Hemodynamics 33

Figure 2.3.1.5. Splanchnic steal theory 33

Figure 2.5.2.1. Distal splenorenal shunt 42

Figure 2.5.2.2. H-shunt 42

Figure 2.5.2.3. Portocaval shunt 42

Figure 2.5.3 TIPS placements principle 46

Figure 2.6.1.1.Medtronic pump 57

Figure 2.6.1.2. VFP pump designed by Yambe et al. (2000) 58

Figure 2.6.2.1. Extracorporeal BAL circuit schematic representation 62

CHAPTER 3 Methods Used in Modelling Experiments

Figure 3.2.1.1. Experimental setting of LDA – basic operational principles 127

Figure 3.2.1.2. The probe and the probe volume 127

Figure 3.2.1.3. Doppler frequency to velocity transfer function for a frequency

Shifted LDA system 128

Figure 3.2.2.1. Silicone cast of varicose vein (stage 1) 131

Figure 3.2.2.2. Rigid polyester resin model of the varicose vein (stage 2) 131

Figure 3.2.2.3. Elastic silicone rubber model based on the previous two models

(stage 3) 131

Figure 3.2.2.4. Representation of bi (tri) furcation 132

Figure 3.2.2.5. Comparison between the two glass models and scale 133

Figure 3.3. Wall shear stress and flow streamline patterns at different cross

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sections of the aorta using CFD analysis 135

Figure 3.3.2.1. Normal and Protrusion model vessel of prosthetics graft

connection to a blood vessel 138

Figure 3.3.4. Grid for (a) normal model; (b) blocked model 141

Figure 3.4.4. Rigid, simple model of equal dimension branching of a vessel 151

Figure 3.5.6. Relationship between pressure, area of vessels and the speed blood

moves with through them in the circulation 163

Figure 3.5.6.1.1. Pulsation of pressure in the circulation 164

Figure 3.5.6.1.2. Mean velocity and velocity fluctuations in the cardiovascular

system 165

Fig 3.6.1. Schematic representation of the experimental set-up 169

CHAPTER 4 Bioreactor

Figure 4.2.1. Multichamber pulsatile bioreactor (a) and experimental

set-up (b) 175

Figure 4.3.1.1.Parallel Plate Bioreactor 179

Figure 4.3.1.2.1 Pulsatile Bioreactor 181

Figure 4.3.1.2.2 Schematic representation of pulsatile Bioreactor 181

Figure 4.3.1.3. Pulsatile bioreactor for tissue engineered aortic heart valve 182

Figure 4.3.2.1. Diaphragm at neutral and above neutral position

and the pressure chamber 184

Figure 4.3.2.2. Schematic diagram of the prototype bioreactor 185

Figure 4.3.3.1. Simplified Bioreactor: front view with silicone tubing attached 186

Figure 4.3.3.2. Upper (left) and lower (right) rings with connected spikes 187

Figure 4.3.3.3. Inlets in front and outlets in the background 188

Figure 4.3.3.4. Glass lid of bioreactor with the gas inlet/outlet 188

Figure 4.3.3.5. Assembled Bioreactor with both rings without the lid 189

Figure 4.3.3.6. Technical drawing of the lower ring 190

Figure 4.4.1. Joining of lower and perfusion chambers 192

Figure 4.4.2. Close up of central area where the scaffold is attached 194

Figure 4.4.3. Inner cylinder and spikes 194

Figure 4.4.4. Bioreactor during LDA measurements 195

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CHAPTER 5 Measurements, Simulations and Results

Figure 5.4.1. LDA visualisation experiments of obstructed vessel in bioreactor 205

Figure 5.4.2. Cross-section of the inner diameter of an ideal glass vessel

and the outside square shape 206

Figure 5.4.3. LDA visualization experiments with normal (non-obstructed)

model in bioreactor 206

Figure 5.4.4. Laser beam through the glass model – side view 207

Figure 5.4.5. LDA experimental setup 207

Figure 5.4.6. Water tank with bioreactor submerged in it 208

Figure 5.5. Calculating k-n parameters for use in the Power Law equation 209

Figure 5.6.1.1. 3-D Grid of simplified blood vessel structure 214

Figure 5.6.1.2. Contours of static pressure (Pascal) in a vessel, assuming identical

outflow from both branches 215

Figure 5.6.1.3. Velocity vectors coloured by velocity magnitude (m/s)

in a vessel, assuming identical outflow from both branches 215

Figure 5.6.1.4. Contours of wall shear stress (Pascal) in a vessel 216

Figure 5.6.1.5. Contours of boundary cell distance in a vessel 216

Figure 5.6.1.6. Cutting planes parallel to the x-axis of velocity vectors

coloured by velocity magnitude 217

Figure 5.6.1.7. Cutting planes positioned within the model representing

contours of velocity magnitude 218

Figure 5.6.1.8. Scaled Residuals 218

Figure 5.6.2.1.(a) Contour of velocity magnitude on an x-y plane cutting

through the middle of the geometry (Z=0 plane) without obstructions 220

Figure 5.6.2.1.(b) Contour of velocity magnitude on an x-y plane cutting

through the middle of the geometry (Z=0) with obstructions 220

Figure 5.6.2.1.(c): Closer view of the contour of velocity magnitude

on Z=0 plane with obstructions 220

Figure 5.6.2.2.(a) Contour of static pressure on Z=0 plane without obstructions 221

Figure 5.6.2.2.(b) Contour of static pressure on Z=0 plane with obstructions 221

Figure 5.6.2.3.(a) Contour of strain rate on Z=0 plane cutting through

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the middle of the geometry without obstructions 222

Figure 5.6.2.3.(b) Contour of strain rate on Z=0 plane with obstructions 222

Figure 5.6.2.4.(a) Contour of wall shear stress on Z=0 plane without obstructions 223

Figure 5.6.2.4.(b): Contour of wall shear stress on Z=0 plane with obstructions 223

Figure 5.6.3.(a). Contours of strain rate when velocity is set at 0.0015m/s 224

Figure 5.6.3.(b). Contours of strain rate when velocity is set at 0.0225m/s 224

Figure 5.6.3.1.1. Z=0 plane contours of velocity magnitude when velocity

is simulated at 0.07m/s 225

Figure 5.6.3.1.2. Z=0 plane velocity magnitude when velocity is simulated

at 0.015m/s 226

Figure 5.6.3.2.1. Velocity vectors at the wall with grid coloured by velocity

magnitude (m/s) when velocity is simulated at 0.07m/s 227

Figure 5.6.3.2.2. Velocity vectors at the wall without the grid coloured by

velocity magnitude (m/s) when velocity is simulated at 0.07m/s 227

Figure 5.6.3.2.3. Contours of the wall shear stress (Pascal) (at the wall) 228

Figure 5.6.3.2.4. Velocity vectors in the Z=0 plane coloured by Y velocity (m/s) 228

Figure 5.6.3.2.5. Velocity vectors in Z=0 plane coloured by static pressure 229

Figure 5.6.3.2.6. Histogram of frequency of velocity magnitude 229

Figure 5.6.3.2.7. Static pressure verses position in the model in the Z=0 plane 230

Figure 5.6.4.1. Leukocyte particle traces coloured by velocity fraction 231

Figure 5.6.4.2. Erythrocyte particle traces coloured by velocity fraction 231

Figure 5.6.4.3. Platelet particle traces coloured by velocity fraction 232

Figure 5.6.4.4. Plasma particle traces coloured by velocity fraction 232

Figure 5.6.4.5. Single stream particles 233

Figure 5.6.5.1. Contours of velocity magnitude (m/s) for a Newtonian flow 234

Figure 5.6.5.2.(a) Profiles of velocity magnitude (m/s) non-Newtonian auto scale 235

Figure 5.6.5.2.(b) Profiles of velocity magnitude (m/s) scaled 235

Figure 5.6.5.2.(c) Contours of velocity magnitude (m/s) for non-Newtonian 236

Figure 5.6.5.3. Contours of velocity (m/s) in Z=0 plane for Newtonian flow 236

Figure 5.6.5.4.(a) Profiles of velocity magnitude (m/s) for non-Newtonian flow 237

Figure 5.6.5.4.(b) Contours of velocity in Z=0 plane for non-Newtonian flow 237

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Figure 5.6.5.5. Contours of wall shear stress (Pascal) for Newtonian flow 239

Figure 5.6.5.6. Contours of wall shear stress for non-Newtonian flow 239

Figure 5.6.6.1.1. Contours of velocity magnitude (m/s) 240

Figure 5.6.6.1.2. Contours of wall shear stress (Pascal) 241

Figure 5.6.6.1.3. Contours of wall shear stress (Pascal) 241

Figure 5.6.6.1.4. Contours of static pressure 242

Figure 5.6.6.2.1. Velocity vectors coloured by velocity magnitude (m/s)

in the default interior 243

Figure 5.6.6.2.2. Contours of velocity magnitude (m/s) at Z=0 plane 243

Figure 5.6.6.2.3. Contours of Static pressure (Pascal) in the default interior 244

Figure 5.7.1.1. LDA measurements of mean velocity in the normal vessel 246

Figure 5.7.1.2. Representation of mean velocity vectors only (vector length 300)

without the contours in a normal vessel (without obstructions) 247

Figure 5.7.1.3. Representation of the obstructed vessel with vector length of 300 247

Figure 5.7.1.4. Close up of the obstructed vessel with vector length of 300 248

Figure 5.7.1.5. A representation of rake of stream traces in a close up view

of the obstructed vessel with vector length of 300 249

Figure 5.7.1.6. A representation of rake of stream traces in a close up view of the

obstructed vessel with vector length of 1500 250

Figure 5.7.2.1. Normal vessel with vector length of 300 (same as Figure 5.7.2.2.) 251

Figure 5.7.2.2. Normal vessel with vector length of 500 252

Figure 5.7.3.1 Normal model with vector length of 700 253

Figure 5.7.3.2. Obstructed model with vector length of 700 253

Figure 5.7.4.1. Normal model with vector length of 300 254

Figure 5.7.4.2. Obstructed model with vector length of 1000 255

Figure 5.7.4.3. Obstructed model with vector length of 1500 255

Figure 5.8.1. CFD points from the inlet to the middle of the branching in

normal vessel 256

Figure 5.8.2. CFD points in the right branch in normal vessel 257

Figure 5.8.3. CFD points in the left branch in normal vessel 257

Figure 5.8.4. Points measured using LDA in normal vessel 258

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Figure 5.8.5. Height of vessels used in LDA and CFD simulations 259

Figure 5.8.6. Height points in the vessels from the CFD simulations

up until just after the trunk obstruction 259

Figure 5.8.7. Height points in the vessels from the CFD simulations

at the area of branching and just below the obstructions in the branches 260

Figure 5.8.8. Velocity in the Left and Right branches around

obstructions for the CFD simulated model 260

Figure 5.8.9. LDA measured points in the obstructed model below the Branching 261

Figure 5.8.10. LDA measured points in the obstructed model in the branching 261

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List of Tables

CHAPTER 2 Literature Review

Table 2.5.2. Comparison between before and after distal splenorenal

shunting in 10 patients 44

Table 2.11.1.1. Comparison of different materials 93

Table 2.11.1.2. Comparison of commercially available suture materials 95

CHAPTER 3 Methods Used in Modelling Experiments

Table 3.3.4.1. Dimensions of the geometry used in this model 141

Table 3.3.4.2. Non-Newtonian power law parameters used in this study 141

Table 3.4.1.1. Composition of human blood 143

Table 3.4.1.2. Blood properties according to the literature 144

Table 3.4.1.3. Portal vein flow 145

Table 3.4.6.1. Comparison between control and Child-Pugh classified patients 154

Table 3.4.6.2. Duplex Doppler Ultrasound measurements of vessel diameter

and average velocity in 14 patients with alcoholic cirrhosis and

portal hypertension 155

Table 3.4.6.3. Duplex Ultrasonographic measurements in 22 control

and 29 PH patients 155

Table 3.4.6.4. Comparison between control and cirrhotic patients

using Doppler Ultrasonography data 156

Table 3.4.6.5. Difference between healthy individuals and patients

with portal hypertension 156

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List of Abbreviations Transjungualar Intrahepatic Portosystemic Shunt (TIPS)

Laser Doppler Anemometry (LDA)

Computational Fluid Dynamics (CFD)

Portal hypertension (PH)

Portal vein (PV)

Transcutaneous Doppler Sonography (TDS)

Intravascular Doppler Sonography (IDS)

Endothelial Cells (EC)

Human Umbilical Vein Endothelial Cells (HUVEC)

Fused Deposition Modelling (FDM)

Rapid Prototype technique (RP)

Pellethane® (PEU)

NH4 plasma treated PEU (PEU-NH4)

H2O plasma treated PEU (PEU-H2O)

Fluorinated PEU (PEU-fluorine)

Polyethylene imine treated PEU (PEU-PEI)

Heparin treated PEU (PEU-heparin)

Polyethylene (PE)

H2O plasma treated PE (PE-H2O)

CF4 plasma treated PE (PE-CF4)

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CHAPTER 1

Introduction

1.1. Background

There is expectancy that by 2010 the worldwide incidence of hepatitis C, a major

cause of liver disease, will probably exceed that of HIV (Gornam 2001). The most

popular treatment for liver disease still is transplantation, but with the number of

patients awaiting an operation increasing, the proportion of available donors

decreases. Growing liver tissue in vitro using “bioreactors” is a potential alternative

treatment. Such devices can be used for both growing new liver tissue for

transplantation or for drug testing. However, one of the setbacks of any in vitro

grown tissue is that there is no certainty that it can reproduce the function of the

original tissue under in vivo conditions.

Portal hypertension is one of the major complications in patients with diseases of

the liver, such as liver cirrhosis, veno-occlusive disease, idiopathic extrahepatic

portal vein obstruction and pre-hepatic portal idiopathic pathology. Portal

hypertension is a build up of pressure in the portal vein, usually just before it enters

the liver. Thus, there is a significant reduction of the blood flow to the liver, which

causes diminished blood supply to the organ and reduction of normal function.

When portal hypertension occurs, the most common solution to restoring the normal

blood flow is to use shunts. A shunt is a graft, which takes the blood from one part

of a blood vessel to another or from one blood vessel to another to bypass problem

areas in the vessel.

In the past, different types of shunts, such as side-to-side, end-to side and

transjungualar intrahepatic portosystemic shunt (TIPS), have been used. However,

in most cases they were used only as a temporary assist device and had to be

replaced after some time due to thrombosis, graft failure and platelet adhesion on

the graft. These are only some of the many reasons why shunts are usually used

only as a short-term solution to assist medication treatment. A more permanent

1

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solution to these problems is to create a bypass or shunt which has minimally

thrombogenic properties, from a minimally platelet adhesive material with a high

degree of durability.

The material from which a shunt or bypass is made generally can be classified as:

synthetic (man-made), autograft (from another vessel of the same patient),

homograft (from another human donor) or animal modified vessel (treated to be

non-antigenic). As well as all the above there are natural shunts that are collateral

pathways of thin-walled new vessels, which the body “creates” to bypass the

diseased vessel. These occur spontaneously, are unpredictable, uncontrollable and

are at high risk of breaking thus causing internal bleeding in the patient. They are

not the type of shunts considered in this thesis.

Synthetic shunts are usually made from polyglycolic acid, polyglucolactic acid,

polylactic acid or polycaprolactone.

A homograft (or animal modified) blood vessel used as a bypass has problems of

incompatibility and rejection by the immune system of the recipient, resulting in the

patient having to take life long immune suppression drugs, thus being more exposed

to other diseases.

Nowadays, it is regular practice to create a bypass and shunt from another vessel of

the patient. There are many benefits to this method compared to the synthetic grafts

or other homografts including high biocompatibility, low risk of rejection and lower

tissue stress.

However, there are certain limitations to this practice of using other blood vessels

(usually venous autografts) – sometimes there are no suitable veins due to other

diseases causing occlusion of the veins (like thrombosis), high blood pressure or

even structural changes in the vessel wall; and the issue of vessel compliance has

been under investigation for the last two decades.

Thus, creating a graft in vitro, using the patient’s own tissue cells to form the new

vessel is a potential alternative solution.

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In this research, methods for the creation of in vitro autografted blood vessels using

the patient’s own cells grown on biodegradable scaffold in a bioreactor to overcome

portal hypertension are proposed.

1.2. Aims of the research

This thesis comprises several parts, attempting to bring together a variety of current

research in the areas of liver and portal hypertension, in vitro cell growth and

scaffolding, design and building of necessary equipment, through to computer

modelling and simulations.

The overall aim of the work is to compose a model of portal vein blood flow in

portal hypertension, with emphasis of the flow dynamics in cirrhotic patients, to

potentially assist surgery assessment and provide information to the medical

practitioner.

One of the expected outcomes of the work is to investigate the possibility of

creating in vitro shunts for non-emergency operations by growing tissue on

biodegradable scaffold in a specially designed and novel type of bioreactor.

The computer simulations will be repeated as physical experiments using Laser

Doppler Anemometry (LDA) measurements utilising the new bioreactor, using a

vessel model with the same geometry as the one used in Computational Fluid

Dynamics (CFD) simulations and liquid with same viscosity as blood (as used in

the computer model). Good agreement between the computer model and physical

experiments is expected. As a result of this work a simple, easy to use, user friendly

and accurate model will be developed, which can be adapted to suit researcher’s

needs and individualised to each patient. That model should represent velocity,

velocity vectors and particle pathways for whole blood or each of the elements

found in blood in terms of: pressure; wall shear stress; strain rate; the impact

viscosity has on the flow; the changed flow when obstructions in the portal vein are

assumed or known; and any combination of the above. Blood will be treated as non-

Newtonian and cell types are to be described using their size and density. The

density, and size if needed, can be given as the exact values of the patient and the

model will individualise the flow visualisation to reflect the input parameters.

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Although the 3-dimensional geometry created in this research will be simplified, it

can be re-drawn based on patient scans, thus giving a realistic view of the flow.

This simple geometry is the basis for the model, which needs customisation to be

useful in medical practice.

This work also outlines areas for future research and suggests improvements and

optimisations to all sections of the thesis. Clinical studies are highly recommended

for assessing the practical usefulness of the model.

1.2.1. Expected contribution of this research The aim of this research is to investigate ways to overcome portal hypertension and

provide a long-term solution via an autograft blood vessel and/or better

understanding of blood flow characteristics using computer modelling. The research

aims to show ways for growth of a new blood vessel in vitro on a biodegradable

scaffold under simulated flow conditions, using the patient’s own cells, in a

specially designed bioreactor. After the scaffold degrades, a new blood vessel will

result. This will eliminate the need to take another vessel from the patient to create

the shunt. The vessel will be biocompatible, resulting in less stress for the body.

The computer model is intended to further our understanding of hemodynamics in

the portal vein in cirrhotic portal hypertension and to allow for easy customization

of design of the vessel scaffold to reflect the specifics of each patient. It has to

allow for non-experts to run the modelling and understand the results. The intent is

to minimize the opportunity for misinterpretation of the results and to permit for

simulation of blockages within the portal vein.

1.2.2. Limitations of this research The implementation of the method of growing a blood vessel in vitro using cells

harvested from the patient in routine medical practice will have certain limitations.

For example, it is not suitable for emergency situations, as the technique will

require months for appropriate tissue growth, special equipment and trained

operators.

Tissue engineering and biodegradable scaffolding materials (including their

manufacturing) are still under development and there is no ‘perfect’ method to

achieve a replica of natural vessels. In this research, a difficulty that was

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encountered was the manufacture of the scaffold, as either the material with the

desired characteristics was unsuitable for the currently available Rapid Prototype

manufacturing equipment, or the machines needed independent research and

development to be able to produce an appropriate scaffold from available materials.

The computer model has to be adjusted and adapted manually and accurate

parameters have to be specified by the operator. Currently, the shape of the vessel

(the grid generated with Gambit) needs to be re-drawn each time depending on the

scanned image of the vein in each patient. If the medical image can be converted

directly into the computer model (novel computer coding is required) this limitation

can be eliminated.

Most of the limitations can be addressed in future research, and so the major

limitation of this thesis is the lack of clinical testing and validation.

1.3. Structure of the thesis

1.3.1. Thesis outline The structure of the thesis is described in brief below.

In the first chapter a brief introduction to the problem and the methods currently

used for solutions are given.

The second chapter deals with the physiology of the liver, and the clinical problems

of cirrhosis and portal hypertension. Here, the most commonly used ways for

dealing with portal hypertension are discussed, and an emphasis on the blood flow

to the liver and the variety of techniques used to measure it are described. Types of

shunts currently used, as well as other treatment methods (including mechanical

devices, bioartificial liver support and bioreactors) are presented. Overviews of

complications and related medical conditions, as well as vessel obstruction, in

portal hypertension are presented.

Further, the literature review chapter gives general overviews of tissue culturing and

methods for cell adhesion to different scaffolding materials, and the variety of

coating materials available are presented. Special requirements for small grafts are

described as the branches of the portal vein and the possible new shunt model can

be smaller than 6mm (in this thesis the sub-branches only are smaller than 6mm

diameter). The importance of pulsatile flow for cell growth with respect to the

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endothelial cell layer and vessel compliance are given. The experiments performed

for this part of the thesis are outlined and future work recommendations are made.

In the third chapter, methods for blood flow measurement in the portal vein are

described in light of their benefits and drawbacks. Laser Doppler Anemometry is

introduced and explained, as this was the method used for physical experimental

measurement in this work. The following sub-chapter on Computational Fluid

Mechanics using Gambit and FLUENT software is presented to enhance our

knowledge on the features of the computer model developed as part of this thesis

and provide the physics and mathematics background to the model. Rheological and

hemodynamic characteristics of the blood flow in healthy and cirrhotic patients and

the impact portal hypertension has on them are combined with general theories and

studies of the blood flow in the human cardiovascular system. The tissue culturing

experiments are presented in brief, and the experimental set-up for the physical

measurements is given. Some more ideas for future work are outlined.

Chapter Four describes the new bioreactor prototype and gives the rationale of the

optimisation work carried out. The operating principle and real-life images of the

device are presented. How this bioreactor meets the requirements for tissue-

culturing device is argued, and possible improvements are suggested. The

advantages of the novel design are explained and the reasons for creating a new

device are given.

The Results chapter (Chapter 5) deals mainly with the computer model and gives

details of geometry generation, flow properties used, the mathematics and

visualisation used in the model. Separate visualisations for velocity, pressure and

wall shear stress are given for both an obstructed (assuming three regions of

obstruction in the vessel) and normal simplified model of the portal vein.

Comparisons between results obtained by using assumptions for Newtonian and

non-Newtonian flow, and using a range of velocities, are presented. Multiphase

flows are simulated for blood plasma, erythrocytes, leukocytes and platelets by

solving separate non-Newtonian power law equations and these are presented as

velocity particle tracking. Visualisation of LDA measurements and the limitation of

that method are presented, followed by the Conclusions chapter and

recommendations for future work. This work highlights areas requiring further

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research in both theory and practice and provides ideas for some future

investigations.

1.3.2. Steps used in this research

For the purpose of in vitro growth of a blood vessel, tissue-culturing methods are to

be used on a variety of materials under steady conditions. This will enable the

establishment of working protocols and evaluation of the methods currently used

and allow for possible areas of future research to be developed. Only basic

experiments were carried out, as this area fell outside of the scope of the research

undertaken. Nonetheless, it has been identified as an area of great interest and

importance.

Design and manufacturing of a novel bioreactor for in vitro tissue engineering will

provide optimum conditions for graft development and subsequent testing with the

device to find areas for optimisation.

Computer modelling (simulations and visualisations) with a vessel and flow similar

to the ones used in the physical experiments need to show good agreement with

results obtained with both methods. The model needs to be simple to use and to

provide information otherwise difficult to obtain via physical measurements.

The computer model has to be easily adaptable to represent the specific conditions

of individual patients, as they will have different physical parameters of the portal

vein (size and shape), blood composition (blood cell components) and flow

parameters (depending on the underlying reasons of the disease and their overall

health).

This thesis represents research carried out aiming to achieve all of the above,

namely: technical design and manufacturing of a novel bioreactor; computer

generation and verification of the vessels modelled: and the opportunity for tissue

culturing in sterile laboratory conditions.

1.4. Practical contributions to knowledge

The following areas are expected to have practical impact on research in this field

and to further our knowledge and understanding of those topics:

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• The design and development of a new type easy-to-use low cost bioreactor for

in vitro growth, which can assist in providing an appropriate environment for

tissue graft culturing. It must have a minimal number of parts, be easy to

sterilise (by autoclaving), and be re-designed to provide versatility and

flexibility thus allowing individualisation of each graft geometry.

• Creating a computer model capable of simulating the flow specifics of

individual patients would provide the opportunity to study the blood flow

behaviour and possibly determine regions of higher risk of the development of

obstructions and blockages. The viability of the in vitro grown vessel could

then be ‘tested’ before manufacturing and tissue culturing by simply creating

new models or modifying existing models to be an exact replica of the desired

vessel.

• Providing a comprehensive review of liver functioning and blood flow in portal

hypertension, cell seeding methods and scaffolding materials, discussing the

physics of portal vein blood flow, and highlighting some of the key factors

which can assist in the development of the desired in vitro grown autograft to

be used as shunt or as replacement for the original vessel. These will make it

easier to understand the complexity of factors contributing to the problems in

the field.

• Modelling the components of blood (the cells) as separate phases will further

our understanding on the impact their density and size has on the blood flow

and portal vein in hypertension.

The practical aim of this research is to investigate ways to overcome portal

hypertension and propose a long-term solution via an autograft blood vessel and/or

better understanding of blood flow characteristics using computer modelling.

Investigations of various tissue culturing techniques and available biodegradable

materials is carried out and a novel bioreactor to host the graft is developed. The

computer model is intended to further our understanding of hemodynamics in the

portal vein in cirrhotic portal hypertension and to allow for easy customisation of

design of the vessel scaffold to reflect the specifics of each patient. This model is

easy to use and does not require computer programming, as data can be simply

inputted, by non-experts, once the model has been created.

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CHAPTER 2

Literature Review

2.1. Anatomy and Physiology of the Liver – brief introduction The liver is the second-largest organ in the human body after the skin. It

is a spongy, reddish brown gland that lies just below the diaphragm in the

abdominal cavity. Lying in the upper right side of the abdomen, most of it is

protected by the ribs. The liver lies beneath the diaphragm in the abdominal

cavity, and above the right kidney (Miller and Leavell 1972). Weighing

approximately 1.5 kg, it pulses continuously as 1.5 litres of blood pass through

it every minute. There are reservoirs of blood in the liver called venous sinuses,

which can hold up to 3.5 litres for boosting blood volume in emergencies (The

Primary Biliary Cirrhosis Foundation 2000). It serves to metabolise

carbohydrates and store them as glycogen; metabolise lipids (fats, including

cholesterol and certain vitamins) and proteins; manufacture digestive fluid, bile;

produce blood-clotting factors; and destroy old, worn-out red blood cells. Two

large lobes, the right and the left, make up most of the liver while the smaller

quadrate and caudate lobes are attached to the right lobe. The lobes are made up

of lobules – six-sided cells arranged in sheets one cell thick – that are closely

arranged around blood vessels, bile ducts, lymph vessels, and nerves. Certain

reticuloendothelial cells (Kupffer cells) line these lobules and play a role in

immunity. Approximately three sides from each six-sided cell are in contact

with a blood vessel, and three are adjacent to a bile duct. The lobules are

grouped in clusters so that the bile manufactured by each lobule passes down a

common duct, which connects to larger ducts that lead to the common hepatic

duct. This duct joins with the cystic duct of the gallbladder and enters the

duodenum along with the pancreatic duct of Wirsung.

The histological composition of the liver is predominantly hepatocytes

(around 78%), non-parenchymal cells (including Kupffer cells and endothelial

cells – around 6%), with the remaining volume being sinusoidal lumen, biliary

channels and intracellular spaces (Puviani et al. 1998).

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The liver has an unusual portal (venous) circulation that has two sets of

capillaries instead of one. Veins draining the upper intestinal tract unite to form

a large vein that then divides again, as an artery would, to form capillary-like

structures, called sinusoids within the liver; sinusoids reunite to form large

veins that return blood to the heart. As liver cells die, the fibrous tissue is

deposited around the small vessels in the liver. This fibrous tissue disturbs the

portal circulation of blood through the liver. The destruction of liver cells

impairs the liver’s ability to store nutrients and to detoxify chemicals produced

by the body or coming from outside.

Figure 2.1. Anterior and Posterior views of the Human Liver (Encyclopaedia Britannica 2005) The liver has a dual blood supply: the portal vein represents a low-pressure

system without significant pulsatility of flow; and the arterial system provides

high pressure and pulsatile flow. Normally, hepatic arterial flow amounts to

200ml/min corresponding to 20-30% of the total blood supply of the liver (Arey

1957; Flemming et al. 1983; Sherlock 1978; Stary et al. 1992; Strandell et al.

1973). Intrahepatic vascular resistance is increased 5-fold in cirrhosis (Moriyasu

et al. 1986), leading to an increase in portal pressure and opening of portacaval

shunts. In advanced cirrhosis, even reverse portal blood flow can occur (Hűbner

et al. 2000). With decreasing portal venous inflow to the liver and spontaneous

or therapeutic portosystemic shunts, the liver blood supply becomes largely

dependent on hepatic arterial perfusion.

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2.1.1. Introduction to the basics liver zoning

According to Prof. Dr. MD. J. Reichen (1998) from the Department of Clinical

Pharmacology, University of Berne, Switzerland, and the handbook for students

at the same University, the liver’s weight is between 1200 – 1500 g, and the

blood passing through it is 25-30% from the heart minute volume, from which

1/4 - 1/3 is coming from the hepatic artery and 2/3 – 3/4 from the portal vein.

The blood circulation in the liver is divided into three zones. Zone 1 contains

the cells closer to the centre of the liver, next to the portal vein system.

Regeneration of the liver begins from this zone. The cells in different zones

have different functions. The importance of the zoning of the liver is seen, for

example, in acute right or left heart failure, where the centrilobular area is most

affected.

The following correlation (Reynolds et al. 1954) between the different pressures

measured or calculated for the liver blood flow can be used:

CSP = WHVP – FHVP (2.1.1.)

where CSP is corrected sinusoidal pressure, WHVP is the pressure of collapsing

of the hepatic veins and FHVP is the free pressure of the hepatic veins. The

increased resistance in cirrhosis is the reason for appearance of “backward

flow”.

2.1.1.1. Structure of the liver

As described above, the liver consists of lobules and is surrounded by a thick

capsule (Arey 1957).

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Figure 2.1.1.1.1.Structure of the liver (Encyclopaedia Britannica 2005)

The liver is a highly vascular tissue. It receives around 25% of its blood from

the hepatic artery (Arey 1957; Balaz 2000; Flemming et al. 1983; Netter 1964;

Sherlock 1978; Stary et al. 1992; Strandell et al. 1973) and 75% from the portal

vein, which has a diameter of 1.09cm (Netter 1964). The liver blood inflow

from the hepatic artery is oxygenated, and from the portal vein is carrying

nutrients and drugs from the GI tract. The hepatic artery and portal vein fuse

within the liver and mix in the sinusoids and blood leaves the liver via the

hepatic vein (Balaz 2000). Sinusoids are microscopic spaces between rows of

liver cells. The hepatic artery and the portal vein divide into fine branches,

which supply blood to the fine bile ducts, which than drain into the sinusoids.

The liver derives its own supply of oxygenated blood from the hepatic artery,

which branches off the aorta. Blood leaving the liver is collected in the hepatic

veins, which join together into a single hepatic vein that empties the blood into

the inferior vena cava. From there it is passed back to the right side of the heart,

to be pumped to the lungs. The liver is composed of minute divisions called

lobules, separated from each other by connective tissue. These lobules are made

up of columns of cells surrounded by tiny channels known as canaliculi, into

which the bile secreted by the liver cells is released. These channels unite to

form progressively larger ducts, culminating in the hepatic duct. A central vein

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is located within each lobule unit, and liver cells radiate outwards from the vein

in all directions. At the periphery of each lobule are 5 to 7 portal triads. Each

portal triad consists of a hepatic portal vein, a hepatic artery, and a bile duct.

The blood from the artery and vein flow into the sinusoids, and then it is

transported past Kupffer’s cells and into the central vein.

Figure 2.1.1.1.2. Blood vessel network within a hepatic lobule (Miller and Leavell 1972 p.419), where the hepatic vein is the outflow, and the branches of the hepatic artery and portal vein are the inflow.

2.1.1.2 Structure of blood vessels

Human blood vessels have a unique structure due to the specialised functions

they perform. The commonality between arteries and veins is that their wall

consists of three layers. The external layer is called adventitia, the middle is

media and the inner one is intima. These layers have different thicknesses and

their ratio to one another is different throughout the vascular system. The intima

is composed predominantly of endothelial cells. The wall of any blood vessel is

predominantly water (about 70%) in combination with elastin, collagen and

other fibres, smooth muscle and endothelial cells.

The portal vein has a very thin wall (Arey 1957) compared to other veins in the

human body.

Blood vessels are viscoelastic, non-linear, not homogenous nor isotropic. The

impact those properties have on the blood flow is discussed in a Chapter 3 of

this thesis.

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The structure, geometry and mechanical properties of blood vessels change with

changes in the stress in the vascular system. This can be due to a variety of

factors, with organ disease, injury and surgery being some of the most common

ones.

The diameter of veins is dependent on the transmural pressure – at 1mmHg the

vein is almost collapsed and at 10mmHg the vein is round.

The most common variations of the portal vein include trifurcations, right

posterior branch arising from the main portal vein and right anterior branch

arising from the left portal vein (Gallego et al. 2002).

A prospective ultrasound study undertaken by Arti et al. (1992) determined the

prevalence of variants of the intrahepatic branching of the portal venous system

as following: of the 507 patients examined, 55 (10.8%) had trifurcation, 24

(4.7%) had a right posterior segmental branch arising from the main portal vein,

22 (4.3%) had a right anterior segmental branch originating from the left portal

vein, and one (0.2%) had absence of the horizontal segment of the left portal

vein. Not one patient had complete absence of the right portal vein in this series.

The remaining 405 (79.9%) patients had normal distribution of the portal

venous system, with some patients of the normal group having minor variations

in distribution.

Forty years ago, M.D. John H. Carter and co-workers (1961) published a paper

on their study of the changes in the hepatic blood vessels in cirrhosis of the

liver, which is still one of the best works in this area. During autopsy, they

gradually injected solutions of differently coloured vinyl plastic in acetone in

the hepatic artery, portal and hepatic veins. Following quantitative comparisons

they found that while the inflow tract and the outflow tract are approximately

equal in the normal liver, in the cirrhotic liver the outflow tract cross section

area is 55% of that of the inflow tract.

The thin-walled, unprotected, low-pressure hepatic veins are easily destroyed

and distorted by the disease process and hence show the greatest change. The

higher-pressure portal vein protected by the stroma of the portal triad is subject

to the same ravages but is more resistant and consequently exhibits less change.

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2.1.2. The effects of Cirrhosis on Liver tissue

In Cirrhosis, damaged liver cells get replaced by fibrous tissue, and the

regeneration of liver cells does not follow the normal process but rather forms

nodules surrounded by that fibrous tissue (Worman 1995). Fibrous tissue causes

increase in resistance, leading to a decrease of blood flow to and through the

organ (Worman 1995). Due to this fibrous tissue portal hypertension is always

present in cirrhosis regardless of the cause of the disease.

Cirrhosis is defined as “a diffuse process characterised by fibrosis and the

conversion of normal liver architecture into structurally abnormal nodules”

(Anthony et al. 1978)

Among physicians there is agreement that cirrhosis is a generic term for hepatic

disease of varied etiology, for example, alcohol abuse, iron overload, drugs and

chronic active hepatitis. However, there is no universal accepted definition.

There are an agreed-upon characteristic of cirrhosis, however, that serves as

guidelines and indicators to aid diagnosis:

1. The architecture of the total liver is disorganised and altered by

interconnecting fibrous scars formed in response to hepatocytic injury and loss,

2. The fibrosis may take the form of delicate bands but may constitute broad

scars replacing multiple adjacent lobules,

3. Nodules (tiny collections of tissues) are created by the regenerative activity

and network of scars. The nodules vary in size, depending on causation, from

micronodules (less than 3mm in diameter) to macronodules (3mm to several

centimetres in diameter),

4. The parenchymal (functional elements of the liver architecture) is generally

disorganised within micronodules, that is, loss of central veins.

Different classifications can be made for the cirrhotic liver depending on the

cause, hepatic size, stage of the disease, etc.

Abnormal vascular (pertaining to blood vessels) connections develop in the

fibrous scars between the portal, arterial, and venous systems that, to an extent,

bypass the hepatic parenchyma. All forms of cirrhosis, whatever their origin,

are chronic progressive disorders, largely because the causation cannot be

controlled in most instances. Most of the fatalities over time result from liver

failure or one of the consequences of portal hypertension related to the

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extensive scarring and nodularity. Cirrhosis distorts normal functional elements

of the liver, resulting in reduced perfusion of the diseased organ and portal

hypertension.

2.1.3. Cirrhosis as a disease

Patients with cirrhosis have reduced quality of life, high mortality risk and other

complications accompanying the disease. Cirrhosis is a worldwide health

problem. Cirrhosis can also lead to other systemic complications including

decreased production of blood clotting factors (leading to bleeding), changes in

the metabolism, immune system dysfunction and abnormalities in the brain. The

major causes of cirrhosis of the liver are alcohol abuse, hepatitis B, C and D

infection, autoimmune hepatitis, genetic abnormalities, inherited metabolic

diseases, drugs, and toxins. The most common understanding of cirrhosis is that

it is irreversible as a disease, although the liver is able to regenerate itself after

being injured or diseased (Arey 1957; Galambos 1979). However, there have

been recent studies based on clinical and laboratory data showing that cirrhosis

might be reversible (Iredale 2003).

Investigating the blood flow in order to understand and improve it, thus helping

the regeneration of the cirrhotic liver is one of the aims of this thesis and the

work undertaken.

Diagnosis of cirrhosis usually is made based on the symptoms of the underlying

disease (Netter 1957). Liver biopsy is done either to confirm such condition or

when the symptoms are not clear enough. It is a simple procedure as the liver is

located very close to the skin, involving a small specimen being taken with a

needle.

2.1.4. Clinical Problems associated with Cirrhosis

A serious outcome of cirrhosis is pressure on the blood vessels that flow

through the liver. Because the normal flow of the blood is slowed, pressure

builds in the portal vein, causing portal hypertension. Blood from the intestines

tries to find a way around the liver through new vessels, which have thin walls

and carry high pressure leading to high risk of breakage and bleeding (Bosh and

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Garsia-Pagan 2000). Thus, lower blood flow and portal hypertension both lead

to progress of the disease and in turn prevents the efficiency of medical

treatments for other diseases (because the liver absorbs medications). By

overcoming portal hypertension and supplying the liver with the normal blood

flow, the regeneration process will be supported and the patient will gain more

time waiting for a transplant or even possible having liver function partially

normalised without the need of transplantation.

Intrahepatic vascular resistance is increased 5-fold in cirrhosis, leading to an

increase in portal pressure and opening of portacaval shunts (Moriyasu et al.

1986).

The sinusoid is fed by both the hepatic artery and portal venous flows.

The formation of the collateral pathways that accompany portal hypertension,

however, should be taken into account when considering portal perfusion. It is

frequently seen in portal hypertension shunts from the coronary vein into the

esophageal varices, from the splenic vein into the left renal vein, and from the

umbilical vein into the veins of the abdominal wall. The coronary vein usually

branches from near the confluence of the splenic and superior mesenteric veins.

About one third of the total blood perfusing the cirrhotic liver may bypass the

sinusoids, and hence functioning hepatic tissue, through these channels

(Galambos 1979).

Summary - in cirrhosis we have on one hand a lower blood flow, and on the

other portal hypertension, both leading to progress the disease and preventing

the efficiency of medical treatment for other diseases.

Solution – ideally the solution will incorporate overcoming portal hypertension

and supplying the liver with the normal blood flow which might support the

regeneration process and the patient will gain more time waiting for a

transplantation or even possible having the liver function normalised without

need of transplantation

Kupffer cells in cirrhosis are more sensitive to Endothelin-1 and platelet-

activating factor, both of which are separate causes for portal hypertension

(Yang et al. 2003).

Patients with liver dysfunction usually have gastrointestinal disturbances due to

obstructed portal vein blood flow (Thompson 1981). One of the functions of the

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liver is to detoxify the blood of ammonia. In cirrhosis, due to damaged liver

tissue this function is obstructed, thus causing brain-damaging ammonia build-

up in the blood serum (Thompson 1981).

Decreased blood flow to the liver and obstruction of blood flow in the portal

vein and portal circulation can be responsible for complications like blood

backing up in the spleen causing it to enlarge or a backflow from the portal to

the systemic circulation leading to varicose veins in the stomach, esophageus

and rectum (which can rupture, bleed massively and even cause death).

Cirrhosis can also lead to kidney dysfunction and failure (Netter 1957).

2.1.5. Methods of dealing with Cirrhotic Liver

Traditionally, medicinal treatment of the underlying injury and the cause of the

injury are used to treat cirrhosis. While those treatments are useful and can

produce good results, they could be complementary to other methods (such as

surgery) for eliminating the disease and its complications.

So far there are two common ways for dealing with the complications of

cirrhosis – transplantation, which is very expensive and relies on finding a

suitable donor, and liver bypass (to avoid further complications such as

backflow and ruptured vessels). With liver bypass, there is still the problem of

lower blood flow through the liver. In addition toxins cannot be cleaned from

the blood because it does not pass through the liver. This makes the resorption

of medication and the blood filtration much lower than the normal range and

can cause many other damages to the body (such as renal or multiorgan failure

(Sauer et al. 2002) and brain damage (Thompson 1981)).

Bypassing the liver using shunts can occur in two ways – natural (new vessels

created within the body) or surgically created (practiced for more than half a

century and still not very well explored). Nevertheless, specialists agree that

shunts do not help the liver regenerate itself.

The regeneration of the liver starts from surviving cells which are provided with

the best blood supply and therefore obtain the most available oxygen and

nutrient source. Therefore, regeneration begins around the axial channels

(Galambos 1979).

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Shunt operations, according to the British Liver Trust Information Service

(BritishLiverTrust), involve surgically joining two veins. Usually, the portal

vein and the inferior vena cava are joined. Shunting of blood is effective in

some patients for preventing recurrent bleeding. This operation is carried out,

usually in non-emergency conditions, in patients who have bled from varices

and whose liver function is still relatively good (BritishLiverTrust). One

disadvantage of shunts is a risk of impairment of brain function called

encephalopathy, as a result of toxic chemicals reaching the brain from the gut

because the blood has been diverted away from the liver cells, which would

normally detoxify the blood. That problem is pointed out as a disadvantage of

surgical shunts by the British Liver Trust (BritishLiverTrust).

2.1.6. Direction of blood flow in Cirrhosis

It is very difficult to measure the direction of blood flow in patients due to the

position of the portal vein. Only few studies have involved multiple patients,

usually they are done on individual cases.

A Doppler study carried out by Luigi Bolondi et al. (1990) showed the

following in respect of blood flow directions in patients with cirrhosis:

Only 7% of patients with hepatofugal flow, 1.1% of which in the portal trunk,

2.7% in the splenic vein and 3.2% in the superior mesenteric vein.

The authors (Bolondi et al. 1990) also found that the diameter of the portal vein

was higher by around 2mm in patients with hepatofugal flow compared to

patients with reversed flow.

An interesting finding (Bolondi et al. 1990; Darnault et al. 1989) shows a

decrease in arterial vascular resistance related to chronic and acute impairment

of the liver function. Using the Pulsatility Index (PI) showed significant

decrease of PI in the superior mesenteric artery in patients with cirrhosis and

acute hepatitis, but not in unrelated to cirrhosis portal vein thrombosis (Darnault

et al. 1989).

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2.1.7. Regeneration of the Liver

There is controversy in the literature about the ability of the liver, and especially

the human liver, to regenerate itself after injury and disease. Some authors are

cautiously saying that usually the underlying liver damage is irreversible (Lai

1997) in patients with chronic liver disease.

Many researchers and literature point to improvement and regeneration of the

liver (Chamuleau 2002; Galambos 1979; Moser et al. 2000l Sauer et al. 2002).

In this respect this project has been developed and completed. According to the

Children’s Liver Disease Foundation (Children’sLiverDiseaseFoundation) some

90% of the liver can be cut away and, providing the remaining 10% is healthy,

the liver will grow back to its original size. There is still work to be done to

verify this, as will be seen in the discussion about small size liver grafts further

in this chapter. Such studies on humans are still far away due to their highly

invasive and uncertain outcome.

In 1953 Charles G. Child and associates (1953) reported experiments in dogs

designed to determine whether portal blood is essential for liver regeneration.

An operation was devised in dogs that accomplished complete diversion of the

portal stream and at the same time provided the liver with profuse supply of

systemic venous blood. According to this and previous studies the liver in

normal dogs regenerates rapidly and completely following partial removal. If,

however, its portal blood supply is compromised either by partial ligation of the

portal vein or side-to-side portacaval anastomosis, or diverted away, liver

regeneration is then inhibited or prevented. Since there is no evidence of any

substance in the portal blood, which might aid such regeneration, this might be

simply due to either lack of portal blood itself, or to simple reduction in the

afferent hepatic blood flow. The data obtained from the study by C.G. Child

(Child et al. 1953) showed that systemic venous blood is capable of supporting

liver regeneration, although not as effective as portal blood, hence the

conclusion is that diminished hepatic blood flow and not portal blood itself is

the reason for failure of liver regeneration. In their experiments regeneration of

the liver averaged 50 % (± S.D. 21) in dogs with portacaval transposition as

compared to 75% (± S.D. 27) in normal dogs subjected to a similar partial

hepatectomy.

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However, this still has to be proven in humans, as it is not clear whether the

same principle will apply.

In cirrhosis, intrahepatic shunts develop and the sinusoids become capillarized

due to the deposition of collagen and cell necrosis, causing decreased drug

elimination and increased vascular resistance with portal hypertension (Cardoso

et al. 1994). The study carried out by Cardoso et al. (1994) in 13 perfused livers

from cirrhotic rats showed that after doubling the flow, intrahepatic resistance

decreased by 31%. The conclusions made by the authors were that increased

portal blood flow in cirrhotic rats induces a decrease in intrahepatic resistance

without changes in the intrahepatic shunting and improves drug elimination by

the liver without adverse effects on hepatocyte viability.

Here, as in the previous example, human studies need to take place to examine

whether this would be applicable to the human hemodynamics.

2.1.8. Factors for scar-production and for regeneration

A group at the University of Newcastle in the U.K. lead by Dr. Chris Day is

working to uncover the signals, which tell the scar-producing cells of the liver

to activate and produce scar tissue. They have shown the importance of

inhibitors for blocking these signals and the possible therapeutic approach to the

treatment of liver fibrosis.

Fibrosis is a term used to describe a build up of scar tissue as a result of

long-term liver disease prior to developing cirrhosis. Fibrosis results from

sustained wound healing in the liver in response to chronic or repeated injury, a

dynamic process of inflammation and repair (Iredale 2003). To the best of our

knowledge to date the two methods for treatment of fibrosis without liver

transplantation are either removing the cause of inflammation and giving

immunosuppressive drugs, or blocking the signals, which activate the hepatic

stellate cells and promote collagen secretion. An extensive review of the

possible therapeutic interventions in liver fibrosis can be found in the article by

Iredale (2003). These interventions will not be described in detail here as they

are out of the main scope of this thesis. However, the impact of the proposed

work on graft treatment of liver fibrosis would need further studies. Lead by Dr.

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J. P. Iredale (2003) at the University of Southampton, a group supported by the

British Liver Trust (BritishLiverTrust) is currently working to discover the

factors, which regulate spontaneous recovery from liver fibrosis by

investigating enzymes degrading scar tissues and their interaction with drugs

and inhibitors. Their initial results suggest possible change in the scarring tissue

to normal under the influence of drug treatment. If this or any other similar

study is successful, cirrhosis may become curable. However, at this stage, to the

best of our knowledge there are no clinical trials in patients with cirrhosis.

2.2. Portal Hypertension Portal hypertension is defined as a sustained increase in the portal vein pressure,

usually as a result from obstruction of the blood flow within the portal

circulation. The scarring of the liver is also considered a cause for portal

hypertension (Encyclopaedia Britannica 2005). The normal pressure in the

portal vein is between 5 and 10mmHg. Most medical practitioners consider

pressure above 12mmHg as hypertension (Schiedermaier 2004).

Portal hypertension is usually seen in patients with liver diseases and less often

in patients without disease of the liver, and increases the risk of internal

bleeding in patients with this condition (Society Interventional Radiology

2004).

There is evidence that a pattern of enlarged paraumbilical vein can be used to

predict portal hypertension, i.e. can be used as an indicator for the presence of

portal hypertension (Dirchfield et al. 1992) and at the same time exclusion

criteria for presinusoidal cause of portal hypertension (Kane and Katz 1982).

The importance of preserving portal blood flow for maintaining the hepatic

function in patients with portal hypertension becomes apparent when

considering patients with non-selective shunting whose liver function

deteriorates and often leads to encephalopathy (Ozaki et al. 1988).

2.2.1. Nature of Portal Hypertension

Portal hypertension is the most common and probably most dangerous

complication of cirrhosis (Denk 2004) and other liver diseases

(BritishLiverTrust). Although the mechanisms triggering portal hypertension

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are not yet defined, some studies have suggested possible and probable causes

of portal hypertension (PH). One of these studies gives a relationship between

the activation of hepatic stellate cells and PH by looking into the mechanisms

that increase the production of endothelin and consequently the increase in

intrahepatic sinusoidal resistance as factors contributing to PH (Iredale 2003).

Haynes et al. (1991) showed that in general veins are more sensitive to

endothelin than arteries. In such a case, advances in medications could provide

a solution to PH in the future. Up until today, to the best of our knowledge, such

drugs have not been created despite the research in this area.

Portal hypertension is caused by increased intrahepatic resistance in most cases,

but can also be due to increase of portal vein flow, or even insufficiency in

other veins participating in the liver inflow and outflow. The splenic venous

flow, for example, affected by large splenomegaly, can cause some degree of

portal hypertension due to the increase in the splenic blood flow.

Patients with portal hypertension have increased portal vein diameter by

approximately 30% and decreased portal vein flow velocity by over 40% (Haag

et al. 1999). Portal hypertension is considered present when the diameter of the

portal vein is larger than 1.25cm and/or the portal vein flow velocity is less than

21cm/sec (Haag et al. 1999). These figures can be used as a guide only and

individual measurements have to be conducted to diagnose PH. Other studies

give different values of the diameter and flow velocity of the portal vein, but the

range is not wide (for example, PV diameter of 14.4±2.4mm was reported in

(Rőssle et al. 1994)).

When PH is present a swelling and twisting of the portal vein can be observed

(varices) leading subsequently to hemorrhage (Zemel et al. 1991).

Depending on the location of the cause for PH it can be classified as

intrahepatic, prehepatic and posthepatic (Cwikiel 2006; Denk 2004).

Some authors (Thomson and Shaffer 2006) prefer classification based on the

cause relative to the sinuses or the site of increased resistance (Schiedermaier

2004), i.e. presinusoidal (which covers the prehepatic and some of the

intrahepatic causes), sinusoidal (covering several of the intrahepatic causes) and

postsinusoidal (covering some intrahepatic and all posthepatic causes).

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An older classification made by Sherlock (1974) classified PH into two main

groups – presinusoidal and intrahepatic. The presinusoidal is further divided

into extrahepatic, in which the obstruction is in the main portal vein, and

presinusoidal, in which the obstruction is usually in the portal tracts.

In cirrhosis, the portal hypertension can also be classified as presinusoidal,

sinusoidal and postsinusoidal (Sherlock 1974; Thomson and Shaffer 2006).

2.2.1.1. Intrahepatic portal hypertension

When the liver itself is diseased, as in cirrhosis, it becomes a cause for portal

hypertension. Some of the commonly known causes of intrahepatic portal

hypertension are:

• Primary Biliary Cirrhosis

Among the diseases causing the intrahepatic presinusoidal portal hypertension

is primary biliary cirrhosis (Sherlock 1974). The intrasplenic pressure and

umbilical (portal) venous pressure are increased but the wedged hepatic venous

pressure is virtually normal. Usually the obstruction is in the portal veins, but

may be along the sinusoids in the space of Disse.

• Idiopathic portal hypertension

Patients with portal hypertension who cannot be classified into any of the

defined disease categories usually are referred to as idiopathic portal

hypertension patients. It is deemed not to be associated with cirrhosis,

extrahepatic portal vein occlusion, schistosomiasis or any other classified cause

(Ohashi et al. 1998). Some authors suggest that it could be due to thrombosis of

the extrahepatic portal vein that subsequently is recanalized in non-cirrhotic

portal hypertensive patients (Almoudarres et al. 1998). In most cases the portal

vein will have a thick sclerotic wall, stellate of fibrosis will be present in the

portal vein with the advance of the condition, and obstruction of the branches of

the portal triad will be visible. Different names have been given in the literature

to those conditions – hepato-portal sclerosis (Oikawa et al. 1998), (non-cirrhotic

(Schiedermaier 2004)) portal or periportal fibrosis, essential portal

hypertension, Mediterranean cirrhosis, or even cirrhosis of splenic origin.

Idiopathic portal hypertension is associated with satisfactory liver function.

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• Hepatic schistosomiasis

The liver function is well preserved, and the cause for the hypertension is intra-

pre-sinusoidal vascular obstruction.

One of the major causes of intrahepatic portal hypertension is cirrhosis.

The portal vascular bed is distorted and diminished and the portal blood flow is

mechanically obstructed. About one third of the total blood perfusing the

cirrhotic liver may bypass the sinusoids through collateral venous channels

(Sherlock 1974). Micro-angiographic studies show arterioles entering the

venous channels surrounding the nodules instead of the sinusoids. A pathway

between hepatic arterial and portal venous branches certainly exists in the

cirrhotic liver, because retrograde flow can be shown, although rarely, in the

portal vein (Sherlock 1974). The portal venous obstruction in cirrhosis is

classified in general terms as intrahepatic (Sherlock 1974) or prehepatic

(depending on physical location) and involves increased resistance in the portal

zones, sinusoids, and hepatic veins. In addition to mechanical obstruction

(backward flow theory), the role of increased splanchnic blood flow in portal

hypertension must also be considered (forward flow theory). Vorobioff and

Groszmann (1983) have done studies in support of the forward flow theory in

rats, showing portal venous inflow, not resistance as reason for maintaining

elevated portal venous pressure. Total splenic blood flow is indeed increased

and splenic vascular resistance reduced in patients with cirrhosis and increases

further after end to side portacaval anastomosis although the portal venous

pressure has returned to normal (Sherlock 1974).

2.2.1.2. Prehepatic portal hypertension

Portal vein thrombosis is the major cause for prehepatic portal hypertension

(Denk 2004; Sarin et al. 2006). The causes for this thrombosis include cirrhosis,

tumours, surgical trauma, infections and pregnancy. The prehepatic portal

hypertension occurs before the blood enters the sinusoids of the liver, and most

often is associated with the development of porto-systemic collateral

anastomoses. Depending on their flow rate, porto-systemic anastomoses can be

divided in the following groups (suggestions only):

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a) Low to moderate flow rate (including gastro-esophageal, hemorrhoidal

and retroperitoneal)

b) Spontaneous and possibly higher flow rates (including spleno-renal,

umbilical, etc.)

Obstruction of the portal vein outside the liver is usually seen in a region close

to a large number of collateral vessels. In most cases the liver is normal and its

architecture is not affected by the obstruction. The presentation of this condition

is portal hypertension. Sometimes the splenic and mesenteric veins can also be

obstructed, contributing to the pressure build up in the portal vein. Extrahepatic

portal vein obstruction can also be a secondary complication of cirrhosis. Thus,

any obstructions to the portal vein have been viewed as relevant to our study

and models will be proposed for patients with portal hypertension, with and

without liver diseases.

Extrahepatic portal vein obstruction in children is a common cause of portal

hypertension (De Ville et al.1999), and in most cases the liver is normal and

bypassing the obstruction can restore the hepatic portal flow and decompress

the portal hypertension.

Partial portal vein occlusion, after portal vein ligation, shows the appearance of

uniform collaterals, resulting in recanalization of the vein (Krupski et al. 2002).

2.2.1.3. Posthepatic portal hypertension

This type of hypertension is observed in cases where the blood flow in the

hepatic veins after exiting the liver is obstructed. The two main conditions are

Budd-Chiari syndrome and veno-occlusive disease.

Veno-occlusive disease obstructs the hepatic outflow and is caused by occlusion

of the central venules and small branches of the hepatic vein. It is a variation of

the Budd-Chiari syndrome, which is characterised by obstruction of the large

hepatic veins caused mainly by hepatocellular carcinoma and bacterial

infection.

Veno-occlusive disease of the liver is a complication of high-dose

chemotherapy and autologous or allogeneic bone marrow or peripheral blood

stem cell transplantation (Zenz et al. 2001). Veno-occlusive disease not only

involves the liver, but is also associated with renal, cardiac and respiratory

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failure, often requiring intensive care and mechanical ventilation. Depending on

the severity of the occlusion of hepatic veins, the arterial blood flow is partially

or completely drained via the terminal portal branches. If most of the terminal

hepatic veins are occluded, the arterial perfusion depends mainly on the

capacity of the portal outflow, which is defined by the splanchnic collaterals

developing during the early phase of the disease. Such patients may not survive

until sufficient collaterals have been developed and die of hepatic failure or

necrosis of the gut. This is where different types of shunts could play a life-

saving role. In some of the patients with posthepatic obstruction portal vein

thrombosis is also present. A successful transjungualar intrahepatic

portosystemic shunt (TIPS) treatment for patients with veno-occlusive disease

has been discussed later in this chapter in section 2.5.3.2.

2.2.2. Ways for overcoming portal hypertension or its complications

Below, a brief classification of most commonly used procedures for decreasing

portal hypertension and/or increasing blood flow through the portal vein is

presented:

a) Shunts – splenorenal shunt; TIPS; small-diameter H-grafts, etc. are

discussed later in this chapter.

Portal blood preservation is one of the most important requirements for

long-term success of any shunt therapy.

b) Medication - β-blockers for treatment of esophageal varices (Dib et al.

2006; Garcia-Tsao et al. 2004); Glucagon injection for increasing the

collateral blood flow in the left gastric vein (response decreases with the

increase of the grade of portal hypertension (Marsutani et al. 2003);

Vasoconstrictive drugs are used to stop bleeding (Harry and Wendon

2002; Lata et al. 2003)

c) Transplantation – full or partial and from living donor or organ donor

d) Pumps- small devices pumping blood through the portal vein into the

liver

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e) Gene therapy: myr-Akt gene therapy, for example is aimed to restoring

Akt activation and NO production in cirrhotic liver, thus may help for

the treatment of portal hypertension (Morales-Ruiz et al. 2003)

f) Balloon-occluded retrograde transvenous obliteration is used when there

are large gastric varices with spontaneous splenorenal shunt (Miyamoto

et al. 2003) as a short-term solution.

g) Endovascular embolization of the hepatolienal vessels (either splenic

artery, left gastric artery or collateral pathways), which has shown a high

mortality rate of 29.8% (out of 329 patients) due to esophageal bleeding

(Karimov 2003).

h) Endoscopic variceal sclerotherapy and ligation (Amitrano et al. 2002;

Rikkers et al. 1987) is usually used alone or in combination with

medication or balloon-tamponade

Most of those methods are discussed in more detail later in this chapter.

2.2.3. Effects of portal hypertension in some liver disease treatments

2.2.3.1. Partial liver transplantation

Partial liver transplantation has been developed as a method to assist more

patients receiving liver transplants using one organ to help two or more patients.

The World wide shortage of organ donors and the long waiting lists have called

for this novel form of liver transplantation. So far the minimum volume of

donor liver required for a successful transplantation has been considered 30% of

the standard liver volume of the recipient (Smyrniotis et al. 2002).

Portal hypertension is the usual cause of small graft failure in partial liver

transplantation (Asakura et al. 2003). Control and management of portal vein

pressure has shown to be crucial for the success of liver transplantation,

especially for partial liver transplantation (Asakura et al. 2003).

This is one of the reasons why this thesis is looking into ways of decreasing

portal vein pressure at the same time as maintaining the blood inflow to the

liver by investigating the mechanisms of the flow.

In split liver transplantation the portal flow is redirected through relatively

small-for-size grafts. Common understanding in the literature is that excessive

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portal blood flow is responsible for graft injury. Many studies have

demonstrated the relationship between portal vein and hepatic artery flow

showing that the increase in portal vein flow leads to decrease in hepatic artery

flow. The diminished arterial flow, which is a cause for hepatic graft thrombosis

and ultimately small-for-size grafts failure, could be potentially prevented by

decreasing the portal hypertension by modifying the portal vein flow

(Smyrniotis et al. 2002). Part of the work in this thesis is related to better

understanding the portal blood flow and thus, creating the ability to modify it.

2.2.3.2. Orthotopic liver transplantation

Not very common, extrahepatic portal hypertension after orthotopic liver

transplantation is usually caused by portal vein stenosis or is due to ligation of

portosystemic shunts (Malassagne et al. 1998). It has been shown in dogs (De

Jonge et al. 2003) that acute ligation of the portal vein can lead to portal

hypertension after partial orthotopic liver transplantation. De Jonge et al. (2003)

recommended banding to divide the portal blood flow between the host liver

and the graft as a better procedure, and concluded that free-flow is not to be

recommended in such patients.

Another rare, but possible complication is portal vein thrombosis

(Bakathavasalam et al. 2001). In such cases re-transplantation and cavo-portal

shunts might be useful to augment portal blood flow.

Portal hypertension combined with ascites, variceal bleeding, esophageal

varices or splenomegaly is making it more difficult for diagnostic methods to

measure portal vein flow. Portal vein stenosis and thrombosis may be

responsible for the failure of the hepatic allograft (Glanemann et al. 2001).

Sometimes spontaneous portal decompression via formation of venous

collaterals can occur. Such spontaneous shunts have been observed in 15.9% of

patients with non-cirrhotic portal fibrosis (Dhiman et al. 2002) and are assumed

to protect these patients from variceal bleeding.

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2.3. Blood flow through the Liver It was mentioned above that the blood flow through the liver is complex and

depends on numerous factors. In this section a better understanding of the

mechanisms and principles of portal circulation is presented.

2.3.1. Portal Circulation

The portal circulation is a differentiated part of the systemic circulation

(Encyclopaedia Britannica 2005). A certain amount of blood from the intestine

is collected into the portal vein and carried to the liver. There it enters into the

open spaces called sinusoids, where it comes into direct contact with the liver

cells. In the liver important changes occur in the blood, which is carrying the

products of digestion of food recently absorbed through the intestinal

capillaries. The blood is collected a second time into veins, where it again joins

the general circulation through the right atrium (Funk&Wagnalls Multimedia

Encyclopaedia).

Figure 2.3.1.1. Human blood circulation (Miller and Leavell 1972)

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It is known that there is a hemodynamic interaction between the hepatic arterial

and portal venous vascular beds such that an increase in blood flow through one

circuit leads to an increased inflow resistance in the other circuit, tending to

maintain a constant blood flow through the liver. This effect has been termed

“reciprocity” between the hepatic artery and the portal vein (Chatila et al.

2000).

Peripheral vasodilatation initiates the hyperdynamic circulation in cirrhosis

(Chatila et al. 2000).

Figure 2.3.1.2. Portal circulation and systemic circulation anastomosis (Miller and Leavell 1972 p.420)

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Figure 2.3.1.3.Portal circulation with most small intestines removed and the liver turned upwards and backwards. The splenic vein is clearly visible (Miller and Leavell 1972 p.417)

The importance of normal blood flow can be seen in all cases of liver disease.

Restoring the blood flow in patients after tumour removal from the main branch

of the portal vein or its bifurcation is essential for postoperative recovery and

long-term survival (Ramesh et al. 2003).

Studies have suggested that portal venous flow is essential for maintaining

normal coagulation (Mack et al. 2003).

In 1995 Newby and Hayes (2002) proposed a hypothesis about splanchnic steal.

They viewed the splanchnic circulation as trying to compensate for the

decreased portal flow not by increasing liver perfusion, but via incremental

shunting of portal blood via porto-systemic collateral anastomoses, thus

creating a ‘steal’ phenomenon. They presented two steals – arterial (from the

systemic circulation into the splanchnic arterial system) and venous (from the

portal vein inflow to the liver into the porto-systemic collaterals). In advanced

liver disease the venous steal can become extreme, thus reversed portal vein

flow may occur.

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Splanchnic Arteries Hepatic Artery Portal Vein Hepatic Vein

Aorta Vena Cava

Figure 2.3.1.4.Normal Hemodynamics (Newby and Hayes 2002)

Aorta Splanchnic Arteries Hepatic Artery Portal Vein Hepatic Vein Porto-systemic Collaterals Vena Cava

Figure 2.3.1.5. Splanchnic steal theory (Newby and Hayes 2002)

2.3.2. Reverse flow

In a healthy liver there is no (or it is very minimal) backflow from the portal to

the systemic circulations (Worman 1995).

According to a study of 228 patients carried out by Gaiani et al. (1991),

reversed flow in the portal venous system was detected in the portal vein in 7

patients (3.1%), and their study indicated that the actual prevalence of reversed

flow in the portal, splenic, and superior mesenteric veins in a nonselected

cirrhotic population was 8.3%.

Reversal in portal venous flow was found in 8 out of 72 consecutive patients

(approximately 11%) studied for evaluation of portal hypertension and cirrhosis

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(Tasu et al. 2002), in 17% of patients with portal hypertension and liver disease

(Ozaki et al. 1988), and in only 5.3% from 118 patients in another study

(Dirchfield et al. 1992). Based on those studies, it can be assumed that

approximately 11% of patients with portal hypertension (SD ± 6) have reversed

portal vein flow.

In 2001 Zenz et al. (2001) diagnosed veno-occlusive disease by duplex-

sonography showing reversed flow direction in intrahepatic portal branches and

the extrahepatic portal vein.

The profile of liver vasculature is affected by cirrhosis and portal hypertension.

Some authors have shown the presence of reversed flow in patients with

portosystemic shunts and veno-occlusive disease and the reversal of the portal

venous flow with the advance in portal hypertension (Kok et al. 1999) and

advanced liver diseases (Nerem 1991).

Reversed flow has been found to occur with a higher rate in patients affected by

alcoholic cirrhosis by Luigi Bolondi et al. (1990).

Reverse flow in the portal circulation has also been reported in patients with a

rare anomaly called congenital hepatoportal arteriovenous fistula (Agarwala et

al. 2000).

In case of post-sinusoidal obstruction, reversal in the intrahepatic portal flow

could be observed.

2.3.3. Spontaneous reverse flow and arguments against its existence

A discussion of reversed flow must mention the huge literature review and

study carried out by Moreno et al. (1975). They introduced a physical analysis,

based on first principles, concerning manometric studies, which demonstrated

that the occluded portal pressure could not be used to construct a hydraulic

gradient for portal flow. They found that actual measurements of magnitude and

direction of portal flow provided impressive evidence against the occurrence of

spontaneous reversal of portal flow in cirrhosis.

“Spontaneous reversal of portal flow” implies that the portal vein delivers

hepatic blood into the splanchnic bed instead of delivering splanchnic blood

into the liver as normal (Moreno et al. 1975). Under these conditions, the blood

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entering the liver through the hepatic artery would find it easier to exit the organ

through the portal vein than through the normal route of the hepatic veins. The

diverted hepatic blood would then fight its way against the incoming splanchnic

flow and eventually reach the right heart via the collateral network.

Apparently, the need for a concept of spontaneous reversal of portal flow was

created by some unexpected results observed after side-to-side portacaval

anastomosis. Although the lower limb of this shunt decompresses the

splanchnic bed, the upper one drains the hepatic blood into the inferior vena

cava.

Over three decades ago, Moreno et al. (1975) made a conclusion still widely

accepted, that “there was no justification for the claim of spontaneous reversal

of portal flow in cirrhosis reported in the literature if the claim was based solely

on the presence of hepatic occluded portal pressure which is higher than either

the free portal or occluded splanchnic pressure”.

In a group of 23 patients with cirrhosis, Reynolds (1955) compared the values

of the sinusoidal pressure using hepatic vein wedged measurements and of the

portal pressure measured simultaneously through the recanalized umbilical vein.

He found that the sinusoidal and portal pressures were almost identical, a fact

that shows the very small resistance existing between the portal vein and the

sinusoids. The results of the important studies of Longmire and associates

indicated that reversal of flow does take place in the hepatic limb of a side-to-

side portacaval shunt, which does not mean that in cirrhosis there is a

spontaneous reversal of portal blood flow. The results from a study involving

294 patients, 273 with cirrhosis and 21 controls (Moreno et al. 1975) showed

reversal flow only in patients after side-to-side portocaval shunt. The

measurement of this group corresponded very well with the ones made by

Sovak and associates (1999) using totally different techniques.

Reversal of portal flow causes diminished flow to the lower cells thus

insufficient oxygen and nutrients supply, which may explain the frequent

encephalopathy following side-to-side portocaval shunts (Sherlock 1978).

However, it seems very unlikely that such reversal of flow occurs with any

frequency. Evidence marshalled by Moreno and his colleagues (1975) casts

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doubt on its existence as a spontaneous phenomenon. It may be a consequence

of any side-to-side portal systemic shunting operation (Sherlock 1978).

In reviewing the literature Kok et al. (1999) concluded, “Portal venous blood

flow becomes reversed with advanced portal hypertension”

2.3.4. Streamline flow

There is another important issue regarding hepatic blood flow, which has

arguments for and against – streamline flow. Whether blood draining from the

mesenteric and splenic vascular beds is mixed within the portal vein or is

selectively distributed to different lobes of the liver has been the subject of

controversy for a century. Gary F. Gates and Earl K. Dore (1973) produced

arguments in favour of the existence of streamline flow in the human portal vein

(Gates and Dore 1973). Their study in 12 patients without liver diseases

demonstrated streamline flow in the human portal system after injection of

radiolabelled gold into various mesenteric veins. According to the researchers,

portal vein blood is directed predominantly to the right lobe, particularly from

subdivisions of the superior mesenteric vein. In support of this is the fact that

since the right lobe is six times larger than the left (Gray 1959 p.1294-1305), if

the hepatic blood was homogenous, a simular proportion of main lesions would

be expected. However, some vessels prefer perfusion through the right lobe 9

times greater than through the left, which can be seen by the clearance of certain

infections (Gates and Dore 1973).

On the other hand there is a study, carried out three years earlier in

unanesthetized individuals, which re-examined the lobar distribution

(Groszmann et al. 1971). The physical model consists of two reservoirs each

with one outlet and two inlets, one of the latter coming from the divided portal

vein into left and right branches. This study was performed on normal and

cirrhotic patients and a consistent pattern of steaming could not be identified in

either group. Also, altering body position in one participant did not affect the

distribution of mesenteric blood flow. Variation in lobar perfusion may occur in

cirrhosis because of differences in the degree of scarring, vascular distortion,

and portosystemic shunting. The arguments both for and against the existence

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or otherwise of streamline in the portal blood flow are strong. Therefore, more

studies are needed to evaluate the portal blood flow, which is quite complicated.

In 2002 Gallix et al. (2002) demonstrated streamlining of splanchnic blood in

the portal vein of fifteen normal subjects using MR data.

Both micro sphere and radio labelled tracer studies suggest that there is no gross

difference between the lobes of the liver in the proportion of either arterial or

portal venous blood received (Richardson and Withrington 1981).

A suggestion, based on experimental results using a gamma camera and

scanning over 10 seconds (Sherlock 1978) is that crossing over of the blood

stream can occur in the human portal vein, which supports the view that the

flow is streamlined rather than turbulent.

In the model of blood flow developed in this thesis the streamline of the flow

was assumed and no turbulence was present at the inlet.

2.3.5. Hepatic artery and portal vein blood flow relationship

Hepatic artery occlusion reduces elevated portal venous pressure and this

procedure has been used in the treatment of severe portal hypertension in

humans. Different quantitative studies have shown that occlusion of one inflow

to the liver usually reduces the calculated vascular resistance of the other circuit

by about 20%, and this occurs for both the hepatic artery and the portal vein

(Richardson and Withrington 1981). In humans, hepatic artery occlusion

reduced portal pressure in portal hypertension by about 15% and portacaval

anastomosis increases hepatic arterial blood flow by 6-400%. Quantitatively it

is clear that though interactions do occur between the hepatic artery and the

portal vein, they are inadequate to compensate fully for marked reductions in or

obstructions to one of the inlets (Richardson and Withrington 1981). Of course

any changes in the outflow resistance from the liver will have an impact on the

inflow resistance, i.e. the portal vein and hepatic artery resistances.

During portacaval shunting procedures any compromises in the hepatic arterial

inflow yield in poor prognosis in cirrhotic patients (Richardson and Withrington

1981). Not only would such change increase the portal vein inflow but it can

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also increase inflow to the intestines and other vascular beds through

arteriovenous shunting.

In the case of liver transplantation arterialisation of the portal vein has been

used for short-term perfusion. Re-canalisation of the portal vein due to

thrombotic occlusion of the portal vein is related to diminished inflow of blood

to the liver. Usually the first treatment is thrombectomy and if it fails then the

use of large collaterals or grafts to the superior mesenteric vein are performed.

Insufficient portal inflow in most studies has been resolved either using portal-

to-caval anastomosis or permanently arterialising the portal vein (Barakat

2003). Arterialisation of the portal vein is regarded as a rescue option for a de-

arterialised liver after the other treatments have failed (Grazi et al. 2003).

Georg H. Hübner and this group (2000) have chosen a thread model of the

hepatic artery with the velocity range of the thread (10-180 cm/s) largely

covering the flow velocities observed in in vivo investigations (6-120 cm/s).

The diameters of the right hepatic artery ranged between 4.3 and 12.4mm, and

with both methods of measurement (transcutaneous and intravascular Doppler

sonography, i.e. IDS and TDS) turbulence were to be expected behind

bifurcations at distance 1.3 times the vessel diameter (Hübner et al. 2000).

2.4. Determining and regulation the Liver blood flow There are three principal determinants of liver blood flow (Richardson and

Withrington 1981): “the hepatic arterial vascular resistance which at constant

arterial pressure governs the hepatic arterial blood flow; the vascular resistance

of the intestine which governs the inflow of blood into the portal vein; and the

intrahepatic portal vascular resistance”. The connections between the portal

venous and hepatic arterial branches entering the sinusoids is one of the factors

enabling the blood flow from a high pressure (arterial) to the low pressure

(portal) systems. In humans, total blood flow is about 800-1200 mL/min

(Richardson and Withrington 1981) of which the hepatic artery supplies roughly

one-third. A hepatic arterial blood flow of 350 mL/min at an arterial pressure of

90 mmHg in a 70kg man (liver weight at 2% body weight = 1400g) gives a

hepatic arterial resistance of about 4mmHg×ml-1×min×100g.

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There are differences in the liver blood flow volume in the literature, with some

general agreement of approximately 200-300 mL per minute per 100grams of

liver tissue or between 800 and 1000 mL per minute (Miller and Leavell 1972).

In experimental studies different researchers obtained different values for the

hepatic arterial and the total liver blood flow, respectively between 83±10 and

559 mL/min for the hepatic arterial and between 131±24 and 1229±230 mL/min

for the total blood flow (Richardson and Withrington 1981). Clinical levels of

anaesthesia reduce total liver blood flow depending on type of anaesthetic used.

Tygstrup et al. (1962) showed the following properties of the blood flow in

humans: pressure of the hepatic artery of 98mmHg; blood flow from the hepatic

artery of 559ml× min-1 ×100g-1; portal venous pressure of 9mmHg (or about

8mmHg according to (Miller and Leavell 1972)) and hepatic venous (or inferior

vena caval) pressure of 5mmHg.

Preoperative percutaneous transhepatic portal vein embolization is used to

improve the outcome of surgery for hepatocellular carcinoma Kubo et al. 2002,

and done on the right portal vein increases the hepatic functional reserve of the

left lobe as well as its volume.

The regulation of liver blood flow by mechanisms independent of external

innervation or vasoactive agents of extrahepatic origin may be considered in

three ways (Richardson and Withrington 1981): ‘(1) regulation of hepatic

arterial blood flow, (2) regulation of portal venous blood flow, and (3) the inter-

relationships between the hepatic arterial and portal venous inflow circuits’. It

may be that hepatic portal venous pressure and not blood flow is the regulated

variable (Richardson and Withrington 1981) since maintenance of a constant

portal pressure would tend to maintain a normal pressure profile across the

hepatic sinusoids and would minimize changes in outflow resistance from the

intestinal and splenic circulations.

2.5. Shunting Creation of shunts is one of the most popular treatments for overcoming portal

hypertension after medication and non-invasive methods have failed. Other

treatment methods are discussed later in this chapter.

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In all kinds of surgical shunt procedures the sudden decompression of the

splanchnic circulation induces a blood volume shift into the systemic bed,

which may cause impaired cardiac function and hemodynamics. There is also,

as discussed earlier, the possibility of reverse flow, which can lead to liver

failure even after a successful shunt surgery. The shunts used in practice are

either intrahepatic or extrahepatic. Intrahepatic shunts include the arterioportal

shunt between the portal vein and the hepatic artery and TIPS. Extrahepatic

shunts are, for example, H-graft shunts between the mesenteric vein and the

vena cava and distal splenorenal shunts.

Another way of classifying shunts would be in terms of the amount of blood

flow re-directed from the portal vein of the liver to another blood vessel

(Collins and Sarfeh 1995). There are total shunts and partial shunts. Total

shunts are, for example, non-selective decompressive shunts, where all the

blood bypasses the liver, thus the liver loses its normal blood supply and at the

same time cannot detoxify the blood which goes straight to the systemic

circulation. The effect of this has been discussed earlier in this thesis. Total and

partial shunts are explained in more details below.

The ideal shunt would preserve portal perfusion, minimally alter portal

hemodynamics, and have low risk of causing encephalopathy and liver

dysfunction (Collins and Sarfeh 1998).

2.5.1. Nature of the shunts occurring during portal hypertension

In the portal hypertensive liver, the formation of shunts between the hepatic

artery, the portal vein, and the hepatic vein can often be seen. These shunts can

affect the portal vascular resistance and the effective blood flow of the liver.

Portosystemic shunts are a common complication in patients with portal

hypertension (Dib et al. 2006; Grace et al. 1996; Sekido et al. 2002), especially

as extrahepatic collaterals. The collaterals can be divided into two major

categories: ascending and descending (Eguchi 1986). The ascending collaterals

mainly involve the gastric coronary vein and usually result in rupture of

esophageal varices (Sekido et al. 2002), and the descending collaterals, such as

splenorenal shunt, often cause refractory hepatic encephalopathy.

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Studies in cirrhotic rats (Tsuchiya et al. 2003) show clearly the presence of

spontaneous portosystemic shunts. Their purpose is to alleviate the hypertension

by redirecting blood through vessels with lower resistance.

Intrahepatic shunts on the other hand, are rarely reported in cirrhotic patients.

One such report of an individual case by Takayama et al. (2001), showed two

portacaval shunts – one from the left portal vein and the other from the

bifurcation of the portal vein occurring.

In trying to bypass obstruction in the portal circulation in portal hypertension

porto-systemic collaterals develop (Dib et al. 2006) carrying high risk of

bleeding (with mortality over 50% from each bleeding episode) (Smith and

Kampine 1984).

The formation of the collateral pathways that accompany portal hypertension

should be taken into account when considering portal perfusion. It is frequently

seen in portal hypertension shunts from the coronary vein into the esophageal

varices, from the splenic vein near the splenic hilum into the left renal vein, and

from the recanalized umbilical vein into the veins of the abdominal wall

(Moriyasu et al. 1986).

According to Ohnishi et al. (1987) it seems that in patients with cirrhosis, the

development of intrahepatic arteriovenous shunts is not as great as that of

portal-systemic shunts, which were found in their study to be considerable and

variable in degree.

2.5.2. Types of shunts depending on shunted blood volume

Portal vein shunts are either total shunts (side-to-side and end-to-side portacaval

shunts) diverting all portal flow from the liver, or partial shunts (small diameter

portacaval H-graft, TIPS etc.).

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KIDNEYS

Figure 2.5.2.1. Distal splenorenal shunt (Malagó et al. 1998)

LIVER SHUNT

K I D N E Y S

Figure 2.5.2.2. H-shunt (Malagó et al. 1998)

LIVER KIDNEYS

Figure 2.5.2.3. Portocaval shunt (Malagó et al. 1998)

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Porto-systemic shunts between the portal vein and inferior vena cava were

introduced in 1945 to relieve pressure in the portal vein (Kofidis et al. 2003).

The American Liver Foundation (American Liver Foundation 2004) reports that

¼ of patients receiving such shunts have uncontrollable bleeding and either die

or require emergency surgery. Even more alarming is that the mortality risk in

emergency operations is between 20% and 50%. Reversal of portal vein flow is

possible in patients after side-to-side porto-caval shunts. There could be many

reasons for this phenomenon, some of which include enlargement in the

diameter of the hepatic vein and atrophy of the liver.

Total shunts are more effective in preventing hemorrhage than medical therapy,

but show increase incidence of encephalopathy and liver failure (Collins and

Sarfeh 1998).

Selective shunts, for example distal splenorenal shunts, are not used in alcoholic

cirrhotic patients even though they maintain good portal perfusion.

Partial shunts, such as small-diameter H-grafts, also maintain good hepatic

perfusion, but are not for use in patients waiting for liver transplantation

because they violate the upper right quadrant (Rhee 1993). Small diameter

portacaval H-grafts usually have a diameter of 6, 8 or 10mm (Collins 1998).

The graft can be made from different materials, with polytetrafluoroethylene H-

graft with collateral ablation showing durability and protection against variceal

re-bleeding (Collins 1998). Ideally, this shunt preserves the portal flow by

minimally altering portal hemodynamics. Even though small H-graft portacaval

shunts provide partial portal decompression, the values of the reduction of

portal pressure or the portal-to-inferior vena cava pressure gradient cannot be

used to predict the outcome of the shunting operation (Rosemurgy et al. 2002).

In the later study, 10% of the patients died within 30 days, and within 3 years an

additional 35% died predominantly due to liver failure.

Randomised comparison of H-graft shunts and TIPS show that the later results

in higher incidences of re-bleeding, death and liver failure (Collins and Sarfeh

1998).

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TIPS can function as a partial shunt if the blood stream’s resistance is high

enough to maintain portal perfusion to the liver (Collins and Sarfeh 1998).

Shunts are either selective or non-selective. Non-selective ones are for example

end-to-side portocaval shunts, small diameter H grafts, proximal splenorenal

shunt, mesocaval interposition shunt and mesocaval C graft (Lai 1997).

Examples of selective shunts are the splenocaval shunt and the distal

splenorenal shunt via the splenic vein and short gastric vein into the renal vein.

One of the problems with distal splenorenal shunts is the possibility in the long-

term for collaterals to develop to decompress the portal pressure, which stays

higher after those shunts when compared to total shunts (Luca et al. 1999).

Distal splenorenal shunts have higher operative mortality, but lower rate of

encephalopathy later compared to porto-systemic shunts (Kofidis et al. 2003).

Some problems with distal splenorenal shunts are the possibility of over 50%

decrease in mean portal blood flow velocity and volume, and the occurrence of

reversal flow. In 1988 the following data was reported (Ozaki 1988) using

Duplex Ultrasonography:

Parameter Before shunting After shunting

Portal vein diameter (mm) 11.13 ± 0.63 10.33 ± 0.55

Portal velocity (cm/s) 9.79 ± 1.35 4.89 ± 1.31

Portal blood volume

(ml/min)

643 ± 152 247 ± 68

Table 2.5.2. Comparison between before and after distal splenorenal shunting in 10 patients (Ozaki 1988)

In many studies selective distal splenorenal shunts are shown to effectively

decompress the spleen and gastroesophageal varices, but to maintain portal

hypertension (Grace et al. 1996; Henderson et al. 1992; Jin and Rikkers 1991;

Rikkers et al. 1987).

Comparisons between end-to-side portacaval shunts and distal splenorenal

shunts show that the first one, despite normalising the portal pressure worsens

the peripheral and pulmonary vasodilatation, while the second one caused no

pulmonary and less peripheral vasodilatation, thus maintaining higher portal

pressure (Luca et al. 1999).

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Decompression of the portal vein by surgical shunts is a possible prevention

treatment for the formation of ascites due to portal hypertension, but there is no

improvement in the survival rate (Ochs et al. 1995) as the mortality has been

reported to be between 5 and 39%.

Total shunts control bleeding well, but the liver bypass of blood increases the

chance of encephalopathy and liver failure. Partial and selective shunts have a

similar degree of bleeding control, but lower incidence of liver failure and

encephalopathy (Henderson 1995). Devascularization has a higher risk of re-

bleeding, but does not alter the portal blood perfusion or the liver function.

Comparing partial portacaval shunts to direct side-to-side portacaval shunts

shows that the first one better preserves the long-term liver function and

minimises postoperative encephalopathy in patients with cirrhosis and variceal

bleeding (Capussotti et al. 2000).

Percutaneous inferior vena cava-to-portal vein shunt (PIPS) is created through

the caudate liver lobe by a transhepatic puncture through the inferior vena cava

and the portal vein (Quinn et al. 2002), where an endograft

(polytetrafluoroethylene sutured to a Palmaz stent) is placed using a jugular

approach. This shunt has the same principle as TIPS and usually has a pressure

gradient between the portal vein and the inferior vena cava between 1 and

9mmHg (with a mean of 5) (Quinn et al. 2002).

Another classification of shunt procedures (Malagó et al. 1998) can be made

based on the shunt location. Central shunts can be divided into total and partial

shunts, while peripheral shunts can be classified into selective and non-selective

shunts (Malagó et al. 1998).

Other parameters to differentiate the type of shunts available are the material,

surface treatment and elasticity of the shunt.

2.5.3. Transjugular Intrahepatic Portosystemic Shunt (TIPS)

TIPS are a side-to-side portocaval shunts used for the treatment of the

complications of portal hypertension. They have similarities to both the total

and the partial surgical shunts (Grace 1993). Transjugular intrahepatic

portosystemic stent-shunts involve the establishment of a portosystemic shunt

by the transjugular insertion of an expandable metallic stent between the hepatic

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and portal veins entirely within the liver parenchyma. TIPS effectively decrease

portal hypertension by connecting the portal and hepatic vein with an

expandable metal stent (Svoboda et al. 1997). In the last 20 years this shunt has

become the favoured treatment of many complications of portal hypertension.

TIPS were first described by Rösch in 1968, and Calapinto developed this

method as a technique in humans in the 1980’s (Mid-America Interventional

Radiological Society). Shunt failure initially diminished the potential success of

TIPS, but with advances in biomaterials and pharmacy, they became a focus for

intensive research.

Where: 1.Outflow - hepatic vein 2. Inflow – portal vein 3. TIPS And the guiding thread in black The TIPS insertion is described below

Figure 2.5.3 TIPS placements principle (Rőssle et al. 1994)

2.5.3.1. Nature of TIPS – surgical procedures

TIPS are performed in many hospitals around the World. The shunt is placed in

a non-operative way, while the patient is under local anesthesia. Usually a

guided catheter is positioned in the right or middle hepatic vein, and a needle is

used to make a puncture in the hepatic vein wall and into an intrahepatic branch

of the portal vein (Mid-America Interventional Radiological Society). Then a

guide wire is introduced and connection is achieved via balloon dilatation of the

parenchymal tract. The last step for establishing the shunt is the implantation of

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metallic vascular stents and their extension onto the two veins, followed by

redilation of the shunt with an angioplasty balloon (appropriate to the patient

size) for reduction of portal vein pressure. TIPS are an effective bridge to liver

transplantation. Functioning as a side-to-side shunt, some of the complications

of TIPS procedure are hepatic encephalopathy and occasional liver failure. TIPS

are not recommended for preoperative portal decompression solely to facilitate

liver transplantation (Brown 1997; Rosado and Kamath 2003). Usually TIPS

have a diameter less than 10 mm, but this can vary depending on the specific

requirements.

The most common complication during TIPS placement is puncture through the

liver capsule, which, if not resealed quickly, can have a fatal outcome for the

patient (Mid-America Interventional Radiological Society). As the catheter is

most commonly introduced via the right jugular vein, it traverses the right

atrium, and thus can cause cardiac rhythm disturbances during the operation.

There is also another possible problem with the catheter – it can buckle in the

atrium (due to the initial placement of the balloon through the parenchyma) and

prolapse into the right ventricle, thus can produce ectopy, ventricular

tachycardia or ventricular fibrillation (Mid-America Interventional Radiological

Society). Nevertheless, the technical success of placing TIPS is above 90%

(Grace et al. 1996).

TIPS are reported as effective in the treatment of recurrent bleeding due to

variceal hemorrhage, refractory ascites (although not well proven), hepatic

hydrothorax, Budd-Chiari syndrome, treatment of hepatorenal failure,

hepatopulmonary syndrome, veno-occlusive disease and bleeding from portal

hypertensive gastropathy (Boyer 2003; Brown 1997; Rosado and Kamath

2003).

2.5.3.2. Complications of portal hypertension treated with TIPS –

advantages and disadvantages of their use

Some studies report on the successful management of portal hypertension with

TIPS placement for long-term results. Although it is commonly agreed that

TIPS has been a major advance in the treatment of portal hypertension, some

cautiousness should apply due to the mortality rate and other complications.

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TIPS have been reported to correct portal hypertension, thus to be more

appropriate as a treatment for variceal bleeding than endoscopic therapy

(Collins and Sarfeh 1998). The two methods have similar survival rates,

although encephalopathy is 30% higher after TIPS (Collins and Sarfeh 1998).

Other reports show limited success for portal hypertension decompression with

TIPS due to early thrombosis (12%), stenosis (41%) and high re-bleeding rate

(Becker 1996). In patients with good liver function elective operation might be

more beneficial than TIPS (Becker 1996), and the latter is more beneficial for

patients with poor liver function, active bleeding or liver transplant candidates.

In patients with refractory ascites (study with 65 patients (Thuluvath et al.

2003)) TIPS are associated with unpredictable and high rates of mortality and

morbidity.

In some cases although the reduction in the portosystemic pressure gradient was

significant (58% - from 24±6 mm Hg to 10±4 mm Hg) 13 out of 29 patients had

shunt insufficiency (Rőssle et al. 2000). As most of those patients had alcoholic

liver disease it is not certain that similar results will be observed in non-

alcoholic patients (Lake 2000). Some studies suggest reduction in portal vein

pressure by 30% and of portosystemic pressure gradient of more than 50% after

TIPS placement (Hidajat et al. 2000). Those percentages are smaller before and

after TIPS revisions.

In its severe form, the portal vein is used as an outflow tract for the arterial

hepatic perfusion (Zent et al. 2001). A portosystemic side-to-side shunt, e.g.

TIPS, may facilitate portal outflow thus increasing hepatic (i.e. arterial)

perfusion.

Surgical side-to-side shunts and TIPS are used for treatment of Budd-Chiari

syndrome (occlusion of central hepatic veins) as they facilitate portal outflow

and thus increase hepatic (arterial) blood supply and improve hepatic function

(Zent et al. 2001).

The limited number of controlled trials on the comparison between TIPS and

other forms of therapy for portal hypertension (Boyer 2003) does not provide

sufficient confidence to conclude that TIPS is the best, or even a better solution.

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Contradictions in results in different case studies may be due to the individual

patients and not to the procedure as such.

TIPS are a common and widely used procedure. Some of the problems with

TIPS are reported in different case studies. Details are given in appendix 6 of

this thesis. Below are some examples of disadvantages of TIPS procedure:

Mortality rate at 30 days of 10% (12.5% reported in (Patel et al. 2001), and

22% in (Dagenais et al. 1994); over 60% in (Ochs et al. 1995) where out of 50

patients 2 died in the hospital and 29 during follow-up) and 15% re-bleeding

caused by thrombosis of the shunt (Svoboda et al. 1997); shunt stenosis and

occlusion in 33 % of patients (Rőssle et al. 1994); some authors even report

occlusion or stenosis of the shunt by neo-intimal hyperplasia narrowing of the

lumen in 20-80% of all patients during the first 6-12 months after the procedure

(Svoboda et al. 1997).

In long-term follow up TIPS have been shown to be associated with high rates

of shunt stenosis and thrombosis (Becker and Reed 1996; Lind et al. 1994).

Shunt dysfunction and hepatic encephalopathy are the major limits for the

success of TIPS (Grace et al. 1996; Rosado and Kamath 2003). Regular and

long-term surveillance of the shunt is required to prevent complications of

portal hypertension due to shunt stenosis. In many cases multiple re-

interventions are required due to shunt stenoses (Pozler et al. 2003).

When rigid or semi-rigid stents are implanted, due to the change in compliance

in the area where the stent joins the vessel, occlusion of the treated vessel can

occur (Puel et al. 1988; Wright et al. 1985).

When compared to endoscopic variceal ligation for re-bleeding prevention in

cirrhotic patients, TIPS do not show improved survival rate two years after

shunt placement in a randomised study (Pomier-Layrargues et al. 2001) in

patients with moderate to severe liver failure.

There are certain complications associated with the placement of TIPS itself,

including liver capsule perforation, intraperitoneal hemorrhage, portal vein

thrombosis and renal failure. The main two problems after the insertion of the

shunt are hepatic encephalopathy (in 20-30 % of patients) and stent occlusion or

stenosis (in 15-50%) (LaBerge et al. 1993; Lai 1997; Nazarian et al. 1994;

Rőssle et al. 1994). There is always the risk, although small of stent dislocation

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following TIPS placement. This procedure, although relatively simple, requires

precise guidance by a radiologist and X-ray tracing, thus exposure to X-rays for

an extended period of time (American Liver Foundation 2004; Society

Interventional Radiology 2004).

In a recent report (Mancuso et al. 2003) investigating patients with Budd-Chiari

syndrome treated with TIPS – 8 of the 15 patients had hepatic failure.

Higher rates of stent occlusion and early re-bleeding are seen after emergency

TIPS placement compared to elective TIPS (Gerbes et al. 1998; Kofidis et al.

2003).

Due to the high occlusion rate and the possibility of blockages, shunt patients

are required to be under intensive medical supervision for a long period of time

(Malagó et al. 1998). The British Liver Trust is also mentioning the temporary

character of TIPS procedure (BritishLiverTrust) in terms of benefits, and the

need for long-term monitoring and evaluation. TIPS can be effectively used as

bridging treatment to liver transplantation in end-stage liver disease (Collins

and Sarfeh 1995).

An advantage of using TIPS is the ability to enlarge the diameter of the shunt

after placement via a catheter procedure (Zemel et al. 1991) and as a major

advantage in TIPSS (TIPS-stent) (Malagó et al. 1998; Rőssle et al. 1994). This

can result in more gradual portal pressure decompression, and thus might help

avoid problems associated with sudden pressure decrease in the portal vein. In

addition to changing stent diameter, the reduction of portal vein pressure can be

influenced by the number of stents and their total length (Hidajat et al. 2000).

TIPS do not require general anaesthetic and has been shown to reduce ascites

(Kofidis et al. 2003; Lake 2000). The transjugular shunt reduces the porto-

systemic pressure gradient and the arterial resistive index, and increases the

stagnant portal vein flow to normal indicating an increase in the arterial

perfusion of the liver (Zenz et al. 2001). In some cases the reported reduction of

the pressure gradient is over 200% (from 36 to 11Hgmm (Zemel et al. 1991)).

Reduction of the porto-systemic pressure gradient from 24.3mmHg to

9.3mmHg (around 2.6 times) is an average decrease as reported in the literature

(Patel et al. 2001).

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The direct mortality from TIPS complications is as low as 5%, but as mentioned

before, the approximately 25% of patients developing encephalopathy is a

drawback (Kofidis et al. 2003).

The success of TIPS depends to a great extent to the skill of the physician

performing the procedure; hence the results a less experienced surgeon achieves

might not be as good (Lake 2000).

TIPS placement is quite expensive, with costs sometimes above 50 000USD,

not taking into account stent revision if needed (Lake 2000). This is another

reason why TIPS should be used only after other treatment methods have failed.

2.6. Other treatments and methods for overcoming portal

hypertension The two most popular techniques for overcoming portal hypertension and

treating late stage liver diseases are shunts and liver transplantation. Liver

transplantation is the best treatment for end stage liver disease (Collins and

Sarfeh 1995). Because of the shortage in donor organs, alternatives such as

partial liver transplantation have been developed.

Approximately 25% of all patients receiving transplantation have variceal

bleeding as a complication of their end-stage disease (Grace et al. 1996).

Here other methods for either treatment or extending the life of the patient are

discussed in some detail. The list is not explicit as new technologies emerge

daily, and some techniques are still not well tested.

2.6.1. Mechanical devices

So far no mechanical devices capable of performing all functions of any given

human organ have been developed and therefore these can only be used as a

temporary measure until a more permanent solution can be employed. In the last

decade there have been many researchers advocating the benefits of

micropumps for liver perfusion. The rationale behind trying to create a

mechanical device is to increase portal flow and so reduce portal venous

pressure. Those promising results determined the direction of our initial

research. Firstly, we looked into the types of pumps for possible implantation in

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human. Then we looked at the materials from which a pump could be made.

Lastly, we investigated the possible ways to drive, monitor and maintain an

implanted mechanical device. Below are some of the ideas we found most

promising, but the list is far from being exclusive. At the end of this section the

reasons for abandoning this as an approach to overcome portal hypertension in

cirrhotic patients are given.

The following is a brief discussion of the types of pumps and micropumps

developed for improving liver perfusion, highlighting their advantages and

disadvantages. These devices could be useful for the short-term, but are not a

good option for long-term treatment.

Types of pumps:

• In 1991 a study (Habib et al. 1991) with a ‘Portac’ balloon pump in pigs

with portal hypertension reduced splanchnic portal pressure and

increased portal flow. Apart from the promising results the researchers

have outlined a potential problem, which does not appear to have been

addressed by previous studies using mechanical devices. That problem

is the possibility that increased portal flow might lead to increased

intrahepatic portal-venous shunting rather than increased sinusoidal

circulation, which could lead to liver failure. Another common problem

is the drive of such a pump. Here the authors have used compressed air,

claiming that it could be replaced by fluid or electromagnetic force. As

this was an early study no means have been employed to address

biocompatibility (although recognised as a problem) and long-term

patency.

• Electric driven impeller pump fixed to the vessel wall for preventing

backflow (Jiao et al. 2000; Marseille et al. 1988). In a pig model, even

though the pump performed really well (~ 50% increase in portal

inflow), thrombus formation could be observed around the impeller.

Given that thrombi developed rapidly (the experiments lasted around 2

hours), this pump may be suitable only for short-term applications,

perhaps complementing other surgical assist devices.

• Totally Implantable Assist Device (Huff 1997) - although its application

is quite different from the one of liver perfusion, is a long-term, small,

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totally implantable, pulsatile pump with no external venting that

includes an integral frictionless hydrodynamic bearing to significantly

reduce long-term wear, hemolysis and thrombosis. The device has a

single rigid moving part (a hollow piston) that works in conjunction with

two FDA approved mechanical heart valves (gate blood flow in a single

direction which functions as safety check valves for fail-safe operation),

providing a pulsatile assist for an ailing ventricle. For this device a novel

multi-motion motor was developed, that rotates and translates the piston

simultaneously for pumping action and to maintain the hydrodynamic

blood bearing. The techniques used in the development of the vascular

assist device (VAD) mechanism are 3-D modelling, Finite Element

Analysis and Control System Simulation tool sets for optimal

performance. So far this device is still under development, but is

expected to be on the market soon. It could be a good starting point for

the future development of a micropump for liver perfusion.

Micropumps are used for a number of applications and have a different work

principle and drive. The only thing in common is the micro-size of the devices.

• Piezoelectric micropumps use a piezoelectric disk to drive the device

(piezoelectric materials, which act very well – operate with high force

and speed, and return to a neutral position when un-powered). This is

one of the most used actuator types in recent years (Bardell et al. 1997;

Dept of Mechanical Engineering and Dept of Electrical Engineering;

Ederer et al. 1990-2000 multiple; Matsumoto et al. 1999). The motion

arises from dimensional changes generated in certain crystalline

materials when subjected to an electric field or to an electric charge.

Piezoelectric materials respond very quickly to changes in voltages

(materials of this type are SiO2; lead zirconate titanate (PZT); lithium

niobate; polyvinylidene fluoride (PVDF)).

With this drive there are many different designs of pumps – membrane,

diaphragm, valve, chamber, passive ball valve, nozzle chamber or

combinations of these.

Micropumps with no moving valve parts (Galambos 1979) are driven by

a piezoelectric disk bound to the pump membrane. They are positive

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displacement pumps, operating at low Reynolds numbers and operate at

750μl/min with maximum heads of 4.75m of water. The development of

a linear system model gives the ability to optimise the pump

performance. Other work has been carried out with similar pumps

(Bardell et al. 1997; Foster et al. 1995; Jang et al. 1999; Jang et al.

2000; Micro Infusion System 2000). The driving element, 5mm diameter

piezoelectric disk is centred over the pump chamber and bonded to the

outer site of the cover plate. The valve operates solely by the differential

pressure characteristics in each flow direction, which are caused by the

flow through it. The pump has higher volumetric efficiency (diodicity)

and easily accommodates 20μm diameter particles

• Thermal driven actuators (thermo-mechanical, phase change and shape

memory require cooling, not suitable for implantation in the human

body) are, so far, used for fluid pumping in applications not involving

implanted systems (Grosjean and Tai 1999; Matsumoto et al. 1999).

• Electromagnetic and electrostatic actuators (fields will arise and

disappear rapidly). The IMALP (Implantable Microsystem for

Augmented Liver Perfusion) project is an example of this type of

actuator for implantation in the human body (Marseille et al. 1988;

Versweyveld 1997) (and electrohydraulic - Yambe et al. 2005).

• A centrifugal pump which increases the negative pressure and is placed

in the venous line (vena cava) was used and studied in Lausanne,

Switzerland to optimise the pump driven venous return for minimally

invasive open heart surgery (Tevaearai et al. 1999). Centrifugal pumps

have been used as heart assist devices for many years, possess good

characteristics and are well studied. The rotary blood pump was

developed 20 years ago after the clinical demonstration of the non-

pulsatile flow in 1949. The non-pulsatile rotary pump is a very useful

ventricular assisted device. Recent research indicated that the diseased

heart could recover if allowed to rest for at least one year, and this is

where the rotary pump could provide a temporary solution. Other

advantages of the blood pumps are that they are simple in design (no

valve), of small size, efficient, inexpensive, can operate at high rpm,

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have no on/off system and do not introduce any psychological

abnormality. At present a team led by Dr. Nose has formulated a

strategy to develop a totally permanent implantable rotary pump –

expected to be available soon (Nose et al. 2000). Currently available

products based on this type of pump are: 2 day pump (eg the

Nikkiso/Fairway pump) with application in cardiopulmonary bypass; 2

week pump (eg the Kyocera Gyro C1E3 pump) with application in

ECMA (Extra Corporeal Membrane Oxygenation) and PCPS

(Percutaneous Cardio-pulmonary Support); Long term pump (eg. the

DeBakey LVAD) with application as a bridge to a recovery device.

Centrifugal blood pumps for medium-term implantation (under 6

months) showed thrombus formation and blood kinking in vivo tests (in

sheep), although performed well on other counts (Goldstein et al. 1992).

• The following two types of devices are used for fluids, but are not

suitable for blood –electro-rheological actuator creates a charge in the

flow, and electro-hydrodynamic actuator needs the fluid to be polarised.

• Catheter pumps are used worldwide. Their applications in drug delivery

and as assist devices are well explored. One of the products on the

market in this group is the P.A.S. PORT® Implantable Peripheral Access

System, developed by SIMS Deltec, Inc., St. Paul, MN55112 U.S.A.

used as long-term central venous access device for delivery of

chemotherapeutic drugs, antibiotics, pain medications, nutritional

solutions, and other intravenous therapies. It is designed to allow a less

traumatic implantation procedure and to be placed in the arm. It is

preferred cosmetically by many patients, is cost-effective, provides

convenient access without having to undress, and the septum access is

designed for needle retention and stability of the fluids. The portal is

made from titanium, has a height of 10mm, weight of 5.6g, and the size

of the base is 26.7×16.5mm. The catheter is made from PolyFlow

Polyurethane, has an inside diameter of 1mm, an outside diameter of

1.9mm, and the length is 76cm, which provides access to places remote

from the arm implanted system. Another catheter pump is the enabler

circulatory support system, which expels blood from the left or right

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ventricular cavity and provides pulsatile flow in the ascending aorta or

pulmonary artery (Nishimura et al. 1999). It is driven by a bedside

installed pulsatile driving console. The system contributes to

stabilization of the circulation in the presence of cardiac unloading. In

heart failure it actually supports the circulation by increasing cardiac

output and perfusion pressure. As a catheter pump the SubQ pump,

designed by Kent Scientific Corporation, CT, U.S.A. is a good example

of an implantable continuous infusion pump, which consists of a

hydromer catheter, has a silicone disk spring that contacts at a constant

rate forcing the infusion liquid out the flow restrictor, and is filled

through the top with serum. So far it has been used in small animals and

has a low continuous flow rate. The Totally Implantable Drug Delivery

System (TI-DDS), developed by Micro Infusions Systeme GmbH,

consists of a pump, port, drug reservoir and catheter. With this device

the patient can release a preset quantity of 5μl or 10μl of the drug by

finger pressure, as required. It is entirely passive, does not possess a

battery or electronic components, can be anchored under the skin, on the

surfaces of a bone or integrated into tissue. A flexible catheter leads

from the TI-DDS to the destination of the drug. It has good

biocompatibility and the materials used are pure titanium and pure

silicon.

• Continuous-flow blood pumps were developed very early by the

pioneers of the heart-lung machines used for cardiopulmonary bypass. A

review of the history of continuous-flow blood pumps was undertaken

by Don B. Olsen (2000) and described the historical development of this

device starting from DeBakey, Gibbons and Wesolowski. The

importance of plasma-free haemoglobin (Ottenberg 1938) is mentioned

as pointing to the meaning of the critical 150mg% level of the plasma-

free haemoglobin and its exit through the urine – the conjugation in the

liver to haptoglobin, which is cleaned through the reticuloendothelial

system to levels up to 150 mg% (reported by Latham). A miniaturized

axial pump mounted on the tip of the catheter that could be passed from

the femoral artery into the left ventricular chamber as an assist device

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was described by Wampler et al. (1988). The impeller on this pump

rotated between 25,000 and 35,000 rpm, to yield an output of 3.5L per

minute. The red cell destruction was very low, it produces 10g of free

haemoglobin per day at 3 L/min of flow (one blood cell for every 56,000

red blood cells that passed through the pump would have to lyse

according to the calculation Dr. Wampler made regarding the

Hemopump). The DeBakey VAD is a very small axial pump to be used

as a left ventricular assist device that has powerful magnets set in the

tips of the inducer impeller vanes that minimize the air gap between the

rotor and the stator of the driving brushless-DC motor. Other pumps

with similar size and configuration have been developed by other

groups.

For example Medtronic Bio-Medicus centrifugal pump as reported by

Clark et al. (1996) is shown on the figure 2.6.1.below.

Figure 2.6.1.1.Medtronic pump (Clark et al. 1996)

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A magnetic suspended centrifugal pump is under development in the

Utah Artificial Heart Institute. Dr. Antaki and the Pittsburgh group have

developed the Streamliner axial flow pump with the impeller suspended

in a magnetic bearing (Bolognesi et al. 2001). Don B. Olsten (2000)

proposed classifications for the blood pumps designed to be used as total

artificial hearts or cardiac replacement devices, as well as a variety of

ventricular assist devices. He divides them into 3 generations: First

generation pumps are the positive displacement or pulsatile pumps (the

CardioWest total artificial heart, the Thoratec biventricular assist

devices, the TCI HeartMate I VAD, the Novacor VAD, the HeartSaver

by Worldheart, and the Pierce Lion Heart, as well as others that are

under development); Second generation are the rotary pumps with

contact bearings and/or seals (the MicroMed DeBakey VAD, the Jarvik

2000 VAD, and the Nimbus-TCI HeartMate II VAD, as well as others

under development) and Third generation pump are rotary pumps with

only magnetic bearings, or rotary pumps without mechanical or touching

bearings (the Terumo VAD, the MedQuest Heartquest VAD, the

University of Pittsburgh Streamliner VAD, and others).

• Vibrating flow pump used as a ventricular assist device, developed for

increasing the blood flow to the brain, where the flow oscillates at

frequency 10-50Hz due to its central tube has shown by Yambe et al.

(2000). The pump is shown on the figure below, and has one jellyfish

valve, four coins and four permanent magnets providing the shake of the

vibrating centre tube.

Figure 2.6.1.2. VFP pump designed by Yambe et al. (2000)

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This totally implantable vibrating flow pump for left heart assist device (pump

outside chest cavity), where oscillating flow is achieved using magnets and

coins to shake the central tube. Jellyfish valve is mounted at the outside of the

central tube.

Miniaturisation of the pumps is a major benefit for all types of machines, but

the introduction of these small devices into patients to assist in the treatment

and monitor progress for different diseases is a major hurdle. As said earlier our

initial project was to develop and optimise such a pump for blood supply to the

liver in cirrhosis. The device above could be used as a starting point in the

future development of such a pump.

So far there is just one group, developing a pump for this application. This is the

joint group of companies and Universities from Belgium, Germany and U.K.

working on the IMALP project under the ESPRIT 4 program. Their project

presents an electric brushless micromotor driven micropump implanted in the

portal vein, with a flow of 2L/min and backpressure of 50mmHg. The pump

consists of an impeller, which has a rotational speed of 24,000rpm. Its diameter

is 7mm and length 32mm. The pump and the motor are physically separated and

the torque is transmitted by a magnetic coupling. Their goal is for a long-term

working micropump. This project relates to the first one described below in the

drive and monitoring section.

Materials for micropumps:

The materials from which the micropump will be manufactured are as important

as the design of the device. Recently, many studies have been conducted on

biocompatibility of materials and new materials have been developed.

The outcome of coating of cardiopulmonary bypass devices is reduced clotting

and significantly improved the biocompatibility of artificial surfaces exposed to

blood (Tevaearai et al. 1999). The process of Trillium™ coating involves

polyethylene oxide, sulphonate groups and heparin. Coating may be one

solution to prevent adverse effects induced by contact of blood elements with

foreign surfaces.

As an example, catheter thrombogenicity has been studied by A. L. Bailly et al.

(Bailly 1999) in 31 patients using a 50 cm catheter test sampler. The tested

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catheters were mainly of polyethylene (PE), Pebax® or polyamide (PA)

sterilised and ready for clinical use. The results showed that the most

thrombogenic material was the smoothest and that there was no correlation

between surface chemical composition and thrombogenesis. However, catheters

that were based on PE appeared less thrombogenic than PA catheters in their

study. Some positive results in attempts to calculate the amount of adherent

thrombus to a rotary pump (paracorporeal left ventricular assist device in

calves) from pump flow rate, motor speed, activated clotting time and pumping

days were achieved by Nakata et al. (2000), although during the trial the study

subjects had to have continuous heparin admission to prevent faster clotting.

Research into the variety of materials, combinations of materials, coating, and

development of new materials is gaining momentum, although so far no perfect

material has been presented. Apart from the biological requirements, such as

low thrombogenesis, biocompatibility and low blood cell damage, a number of

mechanical properties need to be observed (stress, strain, velocity and

compatibility between the materials used in the device). And once all those

questions are answered, the next one to address is how to drive, maintain and

modify the already implantable pump. Some short-term solutions have been

found, mainly in the use of batteries, but not one can provide reliable, long-term

support.

Drive and monitoring:

This is a crucial stage in the development of implantable mechanical devices.

Answers to the questions such as: how to provide power for a long time; how to

eliminate the need for the device to be connected to extracorporeal machinery;

how to monitor and how to carry out maintenance and repair work are required.

In relation to the Belgium/Germany/U.K IMALP project, the Department of

Computing & Electrical Engineering at Heriot-Watt University, Scotland, the

Micro Engineering Group developed a novel project – research into energy

transfer for means of powering implantable systems. Their focus was in

developing a microwave antenna link that was capable of both power and data

transfer through subcutaneous tissue in a safe manner. This microwave link

could provide the necessary bandwidth required by the telemetric

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communications for the control and sending of signals between the implantable

system power supply and also the external monitoring system.

Guidnant Ltd, Belgium, is involved in the same IMALP project, based on

powering the pump by a lithium rechargeable battery and monitoring using

microwaves. This project is residing under the ESPRIT program (Marseille et

al. 1988; Versweyveld 1997) and Guidnant is part of the same project.

Other power alternatives involve optical cables, ultrasound and electromagnetic

waves. With the predicted advances in all areas of science and technology in the

next decade it may be possible to have all the above components developed into

an implantable micropump ready for in vivo testing.

Although micropumps are a solution for overcoming portal hypertension in

patients with cirrhosis there are some problems with this approach, as outlined

below:

• The materials from which devices could be built have to comply with a

variety of biological and mechanical requirements. So far there is no one

material that could comply with all of them.

• The design of the pump has to cause minimal damage to blood cells and

vessel walls, cause no thrombus formation, enable long-term function

and be able to be manufactured easily and inexpensively.

• The drive, monitoring and maintenance of the system needs to be easy,

durable, quick, not requiring hospitalisation or constant medical

observation, and if extracorporeal, not cause infections due to skin and

deeper tissue penetration and damage.

• And finally, even though a pump would increase liver perfusion and

decrease portal venous pressure, it will not help prevent shunting from

collaterals, nor is there evidence it could improve or maintain hepatocyte

function. There are studies suggesting that intrahepatic shunting and

pressure might build with the increase in portal perfusion. If the pump

could slowly increase its speed, change the flow if desired, and be less

invasive to the vessel wall and damaging to blood cells it could provide

a possible solution for overcoming portal hypertension in patients with

cirrhosis.

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2.6.2. Bioartificial Liver

The worldwide shortage of liver donors, the growing number of people

requiring liver transplantation and the success of hemodialysis for patients with

non-functioning kidneys predetermined the development of artificial

extracorporeal liver devices. It needs to be noted that these devices provide only

temporary support to the patients.

Currently, a number of bioartificial liver devices have been proposed and

studied. In this part of the thesis only a brief overview of these is given, with

more details provided on the ones that, in my opinion, have a greater impact on

the emerging technologies.

Bioartificial liver devices incorporate living cells (predominantly hepatocytes)

and are expected to perform most of the functions of the living organ. To date,

all devices of this type are extracorporal, i.e. not implantable.

There are two types of bioreactors currently being developed. The first type

includes bioreactors as devices for growing tissues, predominantly blood

vessels and heart valves, in vitro for study of flow behaviour or for

implantations. That type will be discussed in chapter 4 of this thesis in detail.

The other bioreactors are designed as hosts for tissues, for use as long-term

extracorporeal devices to assist or replace a malfunctioning body organ. These

types of bioreactors are discussed here and some examples of promising work

and future challenges are presented.

Figure 2.6.2.1. Extracorporeal BAL circuit schematic representation (Chaib et al. 2005; Chamuleau 2002)

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This circuit separates the plasma from the blood and provides heating of the

plasma while passing through the circuit.

In general, bioreactors need to comply with a wide range of requirements. From

an engineering point of view the scale, material and assembly of the bioreactor

are amongst the most important issues. On the other hand, from a medical and

biological point of view issues like sterility, growth conditions, operational

temperature and the inner surface of the device are important. The task of

creating a bioreactor is therefore very complex and requires a cross-disciplinary

team of experts. Thus, up to date these are expensive, unique and not widely

available as life-saving devices. Niklason et al. (Mitchell and Niklason 2003;

Niklason et al. 2001; Niklason et al. 1999) have reviewed this area as well as

describing their own work on the topic of bioreactors and tissue grafting. Some

of their work is discussed in other parts of this thesis. They urge a better

understanding of all aspects of the process for developing and operating a

bioreactor for the purpose of tissue engineering.

2.6.2.1. Bioreactors – types, principles and some problems

The following list of currently available or under development bioreactors

includes examples only and is not exhaustive. The one thing these bioreactors

have in common is that they all are extracorporeal liver support methods.

a) CellModule multicompartment bioreactor uses primary human liver

cells with small capillaries with interwoven membranes. Additions to

this system are the DetoxModule for the removal of albumin-bound

toxins and the DialysisModule for veno-venous hemofiltration (Sauer et

al. 2002). Cells attached to a nonwoven polyester fabric acting as a

matrix allowing for direct contact between plasma and cells are

commonly used (Chamuleau 2002; Chamuleau 2003; Naruse et al. 2001.

b) Porcine hepatocytes extracorporeal bioartificial liver (Mischiati et al.

2003) is used to overcome the shortage of available human livers,

although there is the problem with immune intolerance and diseases

transmitted via animal cells or tissues. An important challenge relates to

storage and delivery of these ‘ready-to-use’ bioreactors, with

suggestions refrigeration might be suitable. A flat-plate bioartificial liver

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device with an internal membrane oxygenator and porcine hepatocytes

has shown promising results in rat studies (Shito et al. 2003). So far

there has not been evidence of any immunological problems or

endogenous disease transmission, but at the same time, improvement in

survival rates has also not been definitely established (Chamuleau

2002).

c) Bioartificial liver support system using genetically modified hepatocytes

(Chen et al. 1997; Kawashita et al. 2000; Neuzil et al. 1993; Shatford et

al. 1992) employs collagen coated microcarriers to allow larger number

of hepatocytes to be cultured in a smaller area (like extra fiber space).

Those methods have been successfully tested in large animals with the

use of different genetically modified cells.

d) Liver cells encapsulated in gels are under investigation for both direct

cell transplantation in the peritoneal cavity and for use in extracorporeal

BAL (Chamuleau 2002).

2.6.2.2. Hollow fibre bioartificial liver

The blood perfused hollow fibre cartridge bioartificial liver consists of

hepatocytes seeded in the extra-capillary space. The supply of oxygen to the

cultured cells is very important as hepatocytes consume high quantities of

oxygen to facilitate their metabolic functions.

Those BAL have been used successfully as artificial kidneys, where either the

blood or only the plasma passes through the capillary system of semipermeable

membranes on the other side of which the active cells are attached (Chamuleau

2002).

A number of requirements of the hollow fibre system (Hay et al. 2000),

including the media and cell density need to be taken into account and carefully

studied before further progress can be achieved. In terms of modelling P.D. Hay

et al. (2000) have presented a more complex model than the previously studied

one by introducing transmembrane convective flux, and the practical use of this

device is still to be evaluated. Their model predicts the inappropriateness of the

use of the hollow fibre cartridge as a bioartificial liver.

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2.6.2.3. Fluidised Bed Bioartificial Liver

As can be seen from the number of studies involving extracorporeal bioartificial

liver support, the race for creating the most effective design is still underway.

Fluidised Bed Bioartificial Liver featuring a “bioreactor for extracorporeal liver

supply containing alginate beads in a fluidised bed regimen” was proposed in

2000 (Legallais et al.). In that device, given as an example, empty alginate

beads and saline solution served as solid and liquid phases for the first phase of

their experiment with the tendency of these to be replaced later with hepatocyte

and blood plasma. The materials used for the cylinder and the caps are

polycarbonate, nylon and polyethylene, chosen for their biocompatibility and

possibility for autoclaving. This model was developed by Legallais et al. (2000)

for in vivo testing in pigs and therefore calculated for the specific parameters

(flow rate and vessel diameter) of that animal. In vitro studies performed by the

authors using a roller pump, tank, bioreactor and a safety filter, showed the

effectiveness of this method for extracorporeal liver support.

2.6.3. Non-shunt operations

Non-shunt operations include the Sugiura procedure (transthoracic esophageal

transection), transabdominal esophageal transection and Hassab procedure. In

some countries like Japan (Ohashi et al. 1998) those procedures have been

found useful in preventing bleeding from esophageal varices in patients with

idiopathic portal hypertension. Recurrent varices after non-shunt operation have

been reported with a rate of 3.8% within 8 years going up to 8.9% by the the

15th year (Ohashi et al. 1998), and the rate of recurrent bleeding being up to

5.1% within 10 years and reaching 9.8% till the 15th year. In patients with non-

alcoholic cirrhosis (the predominant cases in Bulgaria) the modified Sugiura

procedure has been used with success in both emergency and planned treatment

for patients with hemorrhage from esophageal varices (Merzhanov and

Damianov 1989).

The Modified Sugiura procedure of transabdominal extensive esophagogastric

devascularization with esophageal or gastric-stapled transection has shown a

survival rate of 88% after 5 years of management of patients with non-cirrhotic

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variceal bleeding even in emergency procedures in patients considered not

suitable for surgical shunts (Mathur et al. 1999). In those operations, patients

with portal and splenic vein thrombosis were not excluded, which gives those

patients which are not considered for most shunt procedures good control of

variceal bleeding in the short and medium terms (Shah et al. 1999).

2.6.4. Sclerotherapy

Sclerotherapy is widely used today as one of the first treatments for portal

hypertension and usually only if it fails are shunt procedures recommended. It

can be used in preventing variceal re-bleeding (Neuhaus and Blumhardt 1991).

2.6.5. Balloon Tamponade

The use of balloon stents was introduced over three decades ago for the

treatment of atherosclerosis. Even though the stent reduces the restenosis of the

blood vessel, the problem with the stenosis of the stent itself still has not been

resolved. Balloon mounted stents are now in use for the coronary artery, still

facing the same problems with long-term efficiency and stent blockages.

There are many reports on the successful use of the balloon tamponade

technique in patients with variceal hemorrhage. There are certain time limits

related to this procedure, with a common use for up to 12 hours but not

exceeding 24 hours. Also reports suggest that half of the patients re-bleed

within 24 hours, and up to 20% of the patients could have fatal complications

after the procedure (Chojkier and Conn 1980). This is a very short-term solution

and so far has not been modified in a way to allow for continuous long-term

use.

2.7. Medical conditions associated with Portal Hypertension Portal hypertension in cirrhosis commonly results in the development of

complications including variceal hemorrhage, ascites, hepatorenal syndrome,

hepatic encephalopathy and spontaneous bacterial peritonitis (Lata 2003).

For most of these conditions transjugular intrahepatic portosystemic shunt

(TIPS) is the last resort treatment after medications and other procedures have

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failed. The nature, benefits and disadvantages of TIPS procedure were

discussed together with other shunt procedures in part 5 of this chapter.

Extrahepatic portal vein obstruction was shown to progress in a long-term

follow up study (Ogawa et al. 2002) due to portal hypertension. The collaterals

that develop in this condition helped to maintain the hepatic flow and there was

no progression of the intrahepatic portal vein obstruction.

2.7.1. Complications of Liver Transplantation

Chronic rejection in allograft liver transplants leads to graft failure within a

couple of years post-operation. Such rejection is usually preceded by acute

cellular rejection (Petrovic 2003). So far only immunosuppression is employed

to prevent graft loss. As it is discussed in several parts of this thesis there are

many risks associated with the use of immunosuppressive medications. Some

patients develop portal hypertension after receiving a liver transplant. There are

suggestions that in such cases the use of TIPS should be considered, even

though the mortality rate at 30 days is around 25%, and 30% of the recipients

undergo another transplantation (Amesur et al. 1999).

Some of the shunts currently in use violate the hemodynamics in a way that

makes it not advisable to proceed with transplantation. An example of such a

shunt is the small-diameter H-graft (Rhee and Sarfeh 1993).

2.7.1.1. Shunts

Patients receiving liver transplantation often have portosystemic shunts due to

portal hypertension (Nosaka et al. 2003). There is much discussion on the use of

ligation of such shunts during the transplant operation. This process is invasive

and needs to be carried out very carefully to avoid varicose bleeding, but helps

increase the portal blood flow to the liver. Some other complications in partial-

liver transplantation were discussed earlier in this chapter (2.2.3.1.).

2.7.1.2. Stenosis

Amongst the most common causes of morbidity and mortality after liver

transplantation are hepatic artery thrombosis, portal vein thrombosis and

inferior vena cava thrombosis.

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Stenosis of the coronary artery bypass (or shunt) has been the object of many

studies in recent years. They have shown the effect blockages have on the

outcome of the procedure and the importance of constant monitoring after the

procedure. In the modelling part of this thesis different models of the portal vein

with blockages are presented together with their impact on the blood flow

pattern when compared to non-blocked vessels with the same parameters.

Studies of coronary bypass have shown that restenosis of the bypass

anastomosis together with the release of growth factors contribute to early graft

failure (Armstrong et al. 2000; Collart et al. 2000: Reicher 1998; Song et al.

2000).

Symptomatic portal vein stenosis is not one of the common complications after

liver transplantation (about 1-2% of patients) and is usually successfully treated

with portal vein angioplasty via either the percutaneous or the mesenteric vein,

or, as recently reported, using transjugular intrahepatic access for introduction

of a balloon catheter (Glanemann et al. 2001). In the literature there have been

reports that the majority of cases of such stenosis are in patients requiring

intraoperative reconstruction of the portal vein or who had preoperative portal

vein thrombosis. Stenosis might be related to the discrepancy between the donor

and recipient vessel size. Some of the other contributing factors are decreased

portal blood flow due to spontaneous collateral formations or previous

splenectomy, hyper-coagulation or severe allograft edema.

Stenosis of the portal vein, or the shunt, can cause a wide range of wall shear

stresses (Hinds et al. 2001) and modelling may need to examine axisymmetric

flow, with changes in the flow pattern.

2.7.1.3. Embolization of the portal vein or one of its branches

Before hepatectomy usually embolization of the portal vein, or one of its

branches in case of partial hepatectomy, is performed. In such cases when

arterial embolization is performed before portal vein embolization the effects of

atrophy are significant. Pre-operative embolization reduces the risk of post-

operative hepatic failure after major liver resection (Taraszov et al. 2002).

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2.7.2. Hepatopulmonary syndrome

Hepatopulmonary syndrome can occur in cirrhotic and non-cirrhotic portal

hypertension. It is suggested that portal hypertension is the predominant

etiopathogenic factor related to hepatopulmonary syndrome (Kaymakoglu et al.

2003).

2.7.3. Variceal bleeding

Portal hypertension is assumed to be amongst the main causes for variceal

hemorrhage due to the increase of portal venous pressure above 12mmHg

(Grace 1996; Lai 1997). The risk of re-bleeding increases in patients with

decompensated cirrhosis amongst other factors. Unfortunately there are studies

showing that up to a third of patients with varices bleed at least once carrying

up to 30% mortality risk at each bleeding (Grace 1990; Lai 1997). Moreover,

there are reports that about 60% of the re-bleeding patiens will die within 1 year

of the last bleeding (Harry and Wendon 2002; Lai 1997). The risk of re-

bleeding has been reported to be as high as between 50 and 80% (Becker and

Reed 1996).

The long-term usefulness of treatments like TIPS still has to be studied in

controlled trials. Some factors, like decompensated cirrhosis, large varices and

hepatocellular carcinoma, increase the risk of recurrent variceal hemorrhage.

Variceal hemorrhage complicates cirrhosis in 50% of patients (Harry and

Wendon 2002). Variceal bleeding results in high morbidity and mortality. The

first treatment is usually endoscopic and pharmacological, but if they fail

balloon tamponade, sclerotherapy, ligation, TIPS or surgery are the only

alternatives. Variceal bleeding has also been reported in a patient after orthotic

liver transplantation, with was combined with portal vein stenosis (Glanemann

et al. 2001).

The rate of growth of varices in patients with cirrhosis is proportional to the

severity of liver disease (Grace et al. 1996).

Portal flow is preserved using distal splenorenal shunts, and the rate of re-

bleeding and encephalopathy are reduced when compared to central shunts.

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Esophageal varices due to opening of porto-systemic collaterals for portal vein

decompression are a common complication in portal hypertension. The main

risk is bleeding from the esophageal varices as this has a high mortality rate.

Idiopathic portal hypertension (IPH) has different complications depending on

the geographical region where it has been studied. For example, management of

esophageal varices in patients with idiopathic portal hypertension in Japan

commonly involves non-shunt operations, where the prevention of bleeding

from esophageal varices is a priority and the incidence of re-bleeding is very

low (Ohashi et al. 1998).

Surgical interventions during acute variceal bleeding result in up to 70%

mortality (Krahenbuhl et al. 1999). If the patient is waiting for liver

transplantation TIPS is the preferred option, although the long-term outcome of

surgical shunts is much better than of TIPS (Krahenbuhl et al. 1999). Some

authors strongly argue in favour of partial shunts like H-grafts for long-term

effective treatment in patients with variceal hemorrhage due to portal

hypertension (Collins et al. 1994). In those trials in the early 1990s, small-

diameter grafts were gaining popularity due to their good management of

variceal bleeding and low rates of hepatic encephalopathy.

2.7.4. Hepatic hydrothorax

In the absence of cardiopulmonary disease in patients with cirrhosis and portal

hypertension a pleural effusion can develop, called hepatic hydrothorax

(Chamutal et al. 2004). The usual treatment for this disease includes medical

therapy, liver transplantation, or a combination of TIPS and thoracoscopic

repair of defects of the diaphragm (this procedure has a high morbidity and

mortality rate due to the nature of the condition). Only 4-6% of patients with

cirrhosis, and up to 10% with decompensated cirrhosis, have this condition, but

most of those patients do have portal hypertension and require liver

transplantation (Chamutal et al. 2004).

2.7.5. Portal hypertensive gastropathy

Portal hypertensive gastropathy is suggested to be related to portal hypertension

although portal hypertension is not the only factor responsible for this condition

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(Grace et al. 1996; Merkel et al. 2003). The most common description of the

condition is in relation to the morphological alterations of gastric mucosa in

patients with liver cirrhosis. Some studies suggested that this condition is a

common complication in cirrhotic patients (Primignani et al. 2000). For the

treatment of acutely bleeding portal hypertensive gastropathy, emergency

portacaval shunts seem to be beneficial (Grace et al. 1996).

One of the largest studies involving 373 patients with cirrhosis was the one in

which all patients seen at 7 hospitals during June and July 1992 were included

and followed up with clinical and endoscopic examinations every 6 months for

up to 3 years in Italy (Primignani et al. 2000). This study concluded that portal

hypertensive gastropathy (PHG) was common in patients with cirrhosis, and its

prevalence paralleled the severity of portal hypertension. Gastropathy can

progress from mild to severe and vice versa or even disappear completely.

Bleeding from this lesion is relatively uncommon and rarely severe.

Sclerotherapy of esophageal varices does not seem to influence the natural

history of this condition.

2.7.6. Porto-pulmonary hypertension

Porto-pulmonary hypertension is described as a hemodynamic constellation of

elevated pulmonary arterial pressure, increased pulmonary vascular resistance

and normal pulmonary capillary wedge pressure occurring in patients with

portal hypertension (Sulica et al. 2004).

Studies have shown that pulmonary hypertension of various degrees is

responsible for liver intraoperative and immediate post-transplantation death

due to intractable right ventricular failure (Kaymakoglu et al. 2003; Sulica et al.

2004).

It is widely acceptable practice to have the absence of pulmonary hypertension

as one of the most common pre-requisites, together with good liver function,

when considering patients for the suitability of shunt treatment.

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2.7.7. Other liver disease conditions

Hepatic encephalopathy may complicate nearly all types of liver diseases. It can

be reversed in some cases, and can lead to death in others. Usually the treatment

of the condition causing the encephalopathy is the only way to deal with this

complication.

Congenital absence of the portal vein with a systemic shunt is a rare

malformation. To date around 30 cases have been reported in the literature

(Appel et al. 2003; Mitchel et al. 2000; Niwa et al. 2002; Northrup et al. 2002)

and the origin of the malformation is still unknown. In the case described by

Appel et al. (2003) and based on the currently available literature, an

assumption could be made that this condition is caused by a thrombotic

occlusion of the extrahepatic portal vein, due to the existence of normal

intrahepatic bile ducts in the liver, as demonstrated by liver biopsy. The

intrahepatic branching of the developing portal vein is a prerequisite for the

formation of intrahepatic bile ducts during embryogenesis and so agenesis of

the portal vein can be excluded as a cause of this disease (Appel et al. 2003).

Distal splenorenal selective shunts have shown the lowest rate of

encephalopathy (3.5%) when compared to TIPS (29%) and total shunts (16%)

(Becker and Reed 1996). The portal vein develops in the 5-10-weeks of embryo

development (Northrup et al. 2002). Absence of portal vein is usually observed

in either absence of joining of splenic vein and superior mesenteric vein, or as

the joint of those two veins to the inferior vena cava instead of entering the liver

(Northrup et al. 2002).

Absence of bifurcation of the portal vein is a rare condition and was first

described by Couinaud C in 1957. Some reports have followed (Cheynel et al.

2001; Couinauld 1993) most in agreement that this abnormality could be found

in 1.5-1.9% of patients undergoing liver surgery. It differs from other similar

conditions in which one of the branches of the portal vein is missing.

Ascites is common in patients with decompensated cirrhosis. It involves fluid

accumulation in the peritoneal cavity, and its presence in cirrhosis has poor

prognosis.

Porto-pulmonary hypertension is another uncommon complication of portal

hypertension.

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Portal vein aneurysm and arterioportal fistula are rare, and in the case reported

by Nam KJ et al. (2003) turbulent flow was observed. In the case of

arteriovenous fistula, increased portal vein flow may lead to prehepatic portal

hypertension. Portal aneurysms are usually found in the main portal vein

branches. As it is not a very well documented condition the treatment is still to

be established.

Isolated intractable bleeding from anorectal varices is a rare complication of

portal hypertension usually treated with shunting procedures.

A number of hepatic diseases have been associated with portal hypertension

during their progression. Some of them have been briefly noted above, and for

illustration purposes a few others are mentioned here. Conditions like pure

hepatic steatosis, hemochromatosis, Wilson’s disease, sarcoidosis, chronic

hepatitis, acute viral or alcoholic hepatitis, partial nodular transformation and

some types of hepatic tumours, are all in some degree associated with portal

hypertension.

2.8. Vessel blockages and thrombosis Thrombus is a clot formed inside a blood vessel, and the condition of forming

clots is called thrombosis (Miller and Leavell 1972).

Liver cirrhosis is the most common cause of thrombosis of the portal vein

(Bolondi et al. 1990).

Portal vein disease could be caused either by stains at the site (thrombi

formation) or by propagation of portal thrombosis from another site (Tanaka

and Wanless 1998).

Studies show that, on average, every third patient with extrahepatic portal vein

obstruction has portal and splenic vein thrombosis (Shah et al. 2003). This

contributes to predominantly left-sided collateralisation. Large clots in the

portal vein could be spread from the intestines and spleen as they carry blood to

the liver. An increase of pressure in intestinal wall capillaries by more than

15mmHg above normal can cause sudden death of the patient. On the other

hand, when the pressure in the hepatic vein entering the vena cava increases by

3-7mmHg, the build up of ascites in the abdominal cavity becomes a new

problem.

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The most common cause of portal vein thrombosis is surgical intervention for

reduction of the portal vein pressure. Thrombosis is most common in patients

with idiopathic portal hypertension (about ¼ of cases), followed by

splenectomy (13%) and cirrhosis (only 1.8% of the cases) (Eguchi et al. 1991;

Shinoka 2002)). Portal vein thrombosis is rare in cirrhotic patients without

related neoplasm (Amitrano et al. 2002)

In children, extrahepatic portal vein thrombosis is associated with abnormal

circulating anticoagulants and procoagulants (Mack et al. 2003). In those cases

it is suggested that restoring the portal flow is crucial for maintaining normal

coagulation.

Portal vein thrombosis is a common complication of splenectomy in patients

with splenomegaly (Eguchi et al. 1991), but the underlying factors for the

development of portal vein thrombosis are still being investigated (Senderos et

al. 2001).

In patients with transcatheter arterial chemoembolization-induced bile duct

injuries some reports have shown over 90% of the patients having narrowing or

obliteration of the adjacent intrahepatic portal vein branches (Yu et al. 2001).

In many studies conducted to evaluate different shunt procedures, patients with

portal vein thrombosis have been excluded (Collins 1998: Rőssle et al. 2000).

This is to illustrate the complex character of thrombosis and its implications on

portal hemodynamics. On the other hand, non-shunt operations have been

performed on patients with portal and splenic vein thrombosis (Shah et al.

1999).

The mechanism of thrombogenesis has been described in the literature and in

basic terms occurs as follows (Fung 1993):

a) Endothelial layer is injured and exposes collagen

b) The collagen interacts with the glycoprotein on the platelet membrane

and other factors within the blood plasma

c) The platelet adheres to the endothelium via fibrinogen and other factors

d) Other platelets circulating in the plasma become attracted to the same

place, thus enlarging the aggregate

An even simpler definition for thrombogenesis can be found in (Strackee and

Westerhof 1993), whereby the “damage to the endothelial layer and the

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subsequent exposure of the sub-endothelial layer to the blood lead to the

adhesion of platelets to the latter, thus the formation of thrombi”.

The formation and stability of a thrombus is mainly due to thrombin, which

generates fibrin from fibrinogen. Thrombosis is a dynamic process, and clot can

be dissolved as easily as formed. There are medications specially designed to

prevent the formation of thrombi, with aspirin being the most commonly used.

Apart from the threat of thrombosis to human life, it is also essential for

preserving it through stopping internal bleeding. The case of portal vein

thrombosis is no different to that of general thrombogenesis in the human

vascular system.

Portal vein thrombosis is an uncommon cause for presinusoidal portal

hypertension, which can be caused by one of three broad mechanisms:

spontaneous thrombosis when thrombosis develops in the absence of

mechanical obstruction; mechanical obstruction caused by vascular injury and

scarring or invasion; or extrinsic constriction by adjacent tumour or

inflammatory process (Uflacker 2003). Although recanalization of the portal

vein is a used and useful technique, it is associated with risk of intimal or

vascular trauma to the portal vein, which then can resolve in recurrent

thrombosis (Uflacker 2003).

Portal vein thrombosis has been reported in approximately 7% of consecutive

patients studied for evaluation of portal hypertension and cirrhosis (Tasu et al.

2002), and in 3.4% in another consecutive study (Ozaki et al. 1988).

Some of the non randomised trials with TIPS addressing the issues of stent

patency, variceal re-bleeding and encephalopathy, showed that, within the first

year of shunt placement, thrombosis or critical stenosis occurred in

approximately 50% of the patients (Collins and Sarfeh 1998; Grace et al. 1996).

This has shown to be a major cause for the TIPS re-bleeding rates of 15-30%

(Grace et al. 1996).

Another alarming study (Rőssle et al. 1994) showed that 25% of the patients

whose stents narrowed after TIPS placement or had stent obstructions (33% of

all 100 patients) developed degenerative brain disease.

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A resection study of 15 livers (Tanaka and Wanless 1998) shows that severe

portal vein disease is more frequent in patients with prior shunt surgery, and the

authors found no evidence of shunt surgery preventing portal vein thrombosis.

Their study is not conclusive and could have been impacted by the small

number of livers, or there might have been bias in assigning the patients for the

shunt procedure.

Even in patients with idiopathic portal hypertension undergoing non-shunt

operations, 1 out of 46 patients died due to portal thrombosis and 4 due to

hepatic failure (Ohashi et al. 1998). Thrombosis was seen as the cause for

mortality attributed to the operation.

With the advance in medicine and pharmacology, pylephlebitis, a

thrombophlebitis condition involving the portal vein and its intrahepatic

branches, is not as common as it use to be. It manifests as obscuring of the

portal triad architecture and is usually caused by infection.

Thrombosis can affect either the liver outflow by obstructing the hepatic vein,

or the inflow via the portal vein or hepatic artery.

The two most important conditions causing obstruction of the hepatic outflow

are veno-occlusive disease and Budd-Chiari Syndrome. The first was briefly

mentioned above (section 2.2.1.3. of this chapter), and involves mainly the

smaller intrahepatic venules. The second usually has an underlying reason of

either obstruction in the inferior vena cava or in the larger branches of the

hepatic artery leaving the liver.

Vessel blockages have been shown to be common in patients with Budd-Chiari

syndrome (BCS). Tanaka et al. (1998) evaluated 15 resected livers to determine

the distribution of vascular obstruction. The authors noted a correlation between

the presence of portal venous disease and the form of cirrhosis in BCS. They

found portal venous disease in all livers, and the grade of the intimal fibrosis

varying in different sections within the same liver. A smaller percentage of

narrowing in the large portal vein has the same grade as a large percentage in

the medium and small portal veins (for example, the highest grade 3 is assigned

when the narrowing is above 20% in the large PV, and above 75% in the

medium and small portal veins) (Tanaka and Wanless 1998).

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Even though rare, there have been reports of portal vein thrombosis following

laparoscopic splenectomy (Eguchi et al. 1991). Up to date there are theories of

the etiology and treatment of portal vein thrombosis, but more studies need to

be conducted to be able to determine the most suitable approach in patients with

thrombosis.

In children with normal liver the occurrence of portal vein occlusion is a

common cause of hypertension. In those cases it is expected that the risk of

bleeding will decrease with age, thus usually the treatment is non-invasive.

In patients with obstructive jaundice the possibility of portal vein thrombosis

has to be considered (Lin et al. 1996).

In a report of 600 pediatric liver transplants in 325 patients (Buell et al. 2002)

with late post-transplant portal vein (38 patients) or vena cava stenosis (12

patients) or thrombosis required further treatment. Predominantly, the factor

responsible for this was considered to be the cryo-preserved vein for portal

conduits.

Exclusion criteria for portal vein pulsatility measurements are portal vein

thrombosis and reversed portal vein flow, amongst other criteria (Barakat

2002). Thrombosis is an exclusion factor in treatment and evaluation of portal

hypertension in the most up-to-date studies (Lake 2000).

2.9. Cell Adhesion The aim of this section of the literature review is to review the importance and

methods of cell seeding and adhesion, the variety of scaffolding materials, and

the methods for growing a blood vessel in vitro. This will involve a discussion

on the various available materials and currently used methods, concluding with

the seeding method, scaffold material and conditions for tissue growth selected

for use in future study. This review provides information and suggests possible

steps to be undertaken as the next step following this study. The importance of

pulsatile flow for culturing the new vessel and other current methods for liver

disease treatment are briefly presented at the end of the chapter. Although some

tissue culturing experiments have been carried out during the time of

completing this project, they were neither comprehensive nor part of the main

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aim of this study. This review however was used in the creation of the

Bioreactor for in vitro tissue culturing.

2.9.1. Terminology

When discussing adhesion in this thesis I am refereeing to cell-adhesion for the

purpose of tissue growth and improvement of biocompatibility of biomaterials.

There is, however, another meaning used in surgery, which I will describe

briefly below. Adhesions are fibrous bands that connect tissue surfaces that are

normally separate. Adhesion formation is a natural consequence of surgery,

resulting when tissue repairs itself following incision, catheterisation, suturing

or other means of trauma. At the places where a surgeon has to cut, handle, or

otherwise manage internal body parts, tissue, which should normally remain

separate, will sometimes become “stuck” together by scar tissue, defined as

adhesions (Dark 2003). The word "adhesion" comes from the Latin "adhaerere"

meaning "to stick to or cling to" (MedicineNet.com 2003). I will not use this

meaning when talking about adhesion in this and the following chapters.

Cell adhesion is affected by a number of factors, which need to be studied and

evaluated in each case study. Examples of such factors are flow patterns,

pulsatile flow, biological activity at the wall, shear stress, pressure and stenosis.

Local hemodynamics affects the spatial distribution of adherent cells via inertial

forces, gravitational forces and stress (Fung 1993; Hacking et al. 1996; Hinds et

al. 2001; Kobashi and Matsuda 2000; Mori 1989).

2.9.1.1. Tissue Engineering

Tissue engineering is a relatively new interdisciplinary field, which applies the

principles of biology and engineering to develop possible substitutes to restore,

maintain or improve the function of tissues or organs. It can be viewed as a

form of therapy, which differs from the standard therapies in that the engineered

tissue or organ becomes integrated within the patient, giving a potentially

permanent and specific cure of the disease state (Chamuleau 2002; Chamuleau

2003; Langer and Vacanti 1993).

Generally, the tissue engineering approaches can be divided in to three groups:

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• Design and growth of human tissues outside of the body for subsequent

implantation to repair or replace diseased tissues - the most popular

example for this approach would be the skin graft, which has been used

for over 10 years for treatment of burns.

• The implantation of either cell-containing or cell-free devices that

encourage the regeneration of functional tissues relying on the

purification and large-scale production of appropriate signal molecules

(such as growth factors) to assist in tissue regeneration. Novel three-

dimensional polymers have been developed, to which cells attach and

grow to reconstitute tissues. A popular example of this category is the

biomaterial matrix used to promote bone re-growth for periodontal

disease.

• The development of external or internal devices containing human

tissues designed to replace the function of diseased internal tissues - this

approach involves isolating cells from the body (using techniques such

as stem cell therapy), placing them on or within structural matrices, and

implanting the system inside the body or using the system outside the

body. Some examples are repair of bone, muscle, tendon, and cartilage,

cell-lined vascular grafts and artificial livers and include the

extracorporeal liver support (Sauer et al. 2002), BAL (Kawashita et al.

2000; Legallais et al. 2000; Mischiati et al. 2003; Shito et al. 2003),

isolated hepatocytes (Puviani et al. 1998), etc.

Areas of concentrated research efforts include: cell isolation and cell

substitution; tissue-inducing substances; and cell placement on or within

matrices (extracorporeal or for implantation) (Langer and Vacanti 1993).

In cases like tumour removal in the portal vein or its branches a section of the

hepatic vein is used to patch-up the portal vein and restore blood flow through

the liver (Prakash et al. 2003). This is an example of tissue engineering, but is

not an area this thesis has looked into due to the mainly surgical aspect of the

problem.

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2.9.1.2. Importance of the endothelial cell lining of blood vessels

The importance of endothelial cell lining of blood vessels have been studied for

many decades with emphasis on their biological function, density, orientation

towards the flow and mechanical properties. Most studies have concentrated on

the endothelial cell (EC) inner layer of the aorta and main arteries. In the

arteries the interaction between EC and smooth muscle cells is very important

for the biomechanical behaviour of the vessel and for its reaction to the pulsatile

blood flow. Major studies over the last decade reviewing the intima (inner

layer) of arteries and its relationship with atherosclerosis have been carried out

by the American Heart Associations Committee on Vascular Lesions show the

important role EC have on the overall structure and behaviour of the arteries. It

is worth mentioning that in their first study published in 1992 (Stary et al.), an

explanation on the different vessel layer structure and thickness in regions of bi-

or trifurcations for arteries was given, which can lead us to conclude that there

is a need for studies to determine how veins adapt their structure in such

regions. In the absence of any such data, in this thesis we have assumed unified

vessel structure in all regions of the created model.

Another fact to remember from that study is that under normal conditions the

endothelium does not support the adherence of large numbers of leukocytes,

platelets or the formation of thrombi. There are many reasons for this but the

work presented here will only deal with the most important. A small review on

some of those factors is made further in this chapter, but its purpose is to

explain why endothelial lining of a graft could be beneficial to the outcome of

the shunt procedure. Investigations on the topic will need to be a subject of

further studies.

The thin (0.1-0.5μm) single layer of endothelial cells on the blood vessel wall

contact surface has predominantly two functions: preventing the adhesion of

particles and cells to the wall, and selective permeability of substances.

Although this layer has no effect on the elastic properties of the blood vessel it

responds to physical (such as shear stress and pulsatility) and to chemical

stimuli (Mori 1989, Chapter 9). The “endothelium interacts with the basement

membrane in one of the following ways” – adhesion, spreading, migration and

proliferation (Mori 1989, Chapter 10).

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Endothelial cells change their shape, size, orientation and intercellular contacts

depending on specific conditions, i.e. they elongate and re-orient their

cytoskeletons in the direction of the flow as a normal response to prolonged

shear stress (Bruden et al. 2001; Nerem et al. 1998; Shiomi et al. 2000).

2.9.2. History of cell adhesion and cell seeding

Cell adhesion and tissue culture are techniques with a very wide range of

applications, such as bone, artery and organ tissue growth, tissue reconstruction

and regeneration and the grafting of prostheses to improve their qualities.

Although work on endothelial cell seeding of vascular prostheses was first

published in 1978, no clinical breakthrough had been achieved before the early

1990’s (Zilla 1991). Clinical data on single-staged procedures using freshly

harvested autologous venous or microvascular endothelial cells (to the graft at

time of implantation) are scarce and controversial. The alternative approach –

the application of culture techniques – has the disadvantage of being restricted

to major centres. Moreover, this in vitro endothelialization is confined to

elective cases because of the delay caused by cell cultivation. Nevertheless,

initial clinical trials with this two-staged technique are encouraging and indicate

that the creation of an endothelium on the inner surface of prosthetic grafts is

feasible in humans.

The replacement of arteries with purely synthetic vascular prostheses often

leads to the failure of such reconstructions when small-diameter or low-flow

locations are concerned, due in part to the thrombogenecity of the internal graft

surface (Bordenave et al. 1999). In order to improve long-term patency of these

grafts, the concept of endothelial cell seeding has been suggested because this

metabolically active endothelial surface plays a major role in preventing in vivo

blood thrombosis and because vascular grafts placed in humans do not

spontaneously form an endothelial monolayer whereas they do in some animal

models (Mori 1989; Niklason et al. 2001; Niklason et al. 1999).

Research has been concentrated in studying the interaction between the

prosthetic graft (scaffold) and the tissue culture. Some of the most significant

studies in relation to the liver include:

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• Cell adhesion to fibronectin – pre-coated, smooth and textured silicon

• Dynamic cell seeding – for bone tissue in high aspect ratio rotating

bioreactor using polymeric scaffolds (prospective use for the high

density hepatic cell culture)

• Bioartificial Liver support system

• Heterotypic cell co-culture (several cell types grown simultaneously)

2.9.3. Methods of cell seeding and cell adhesion

The conditions, under which a graft is seeded with endothelial cells in situ

(including the axial force) has a huge impact on the graft’s performance post-

transplantation (Charara et al. 1999).

The composite structure resulting from the combination of biologically active

cells to prosthetic materials creates more biocompatible vascular substitutes. To

achieve endothelialization of synthetic vascular grafts, “one-stage” procedures

(cell seeding on the graft at time of implantation) were first developed which

are now replaced by “two-stage” procedures (in vitro cell seeding and growth

followed by implantation). Demonstration of the superiority of the two-stage

method in terms of significantly increased patency of the graft is shown in

(Bordenave et al. 1999) where successful endothelialization of grafts was

observed.

2.9.3.1. Endothelial cell seeding

Endothelial cell seeding is carried out in order to improve long-term patency of

purely synthetic vascular prostheses, to improve biocompatibility and decrease

thrombogenecity.

Long-term patency of artificial vascular grafts for hemodialysis access and for

bypass or interposition in small calibre arteries is limited due to neointimal

hyperplasia and associated graft thrombosis (Ballermann and Ott 1995;

Greenwald and Berry 2000). Given the anticoagulant and vasodilator properties

of endothelial cells, these problems could be partially overcome if grafts were

seeded with an adherent monolayer of differentiated endothelial cells prior to

implantation.

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Endothelialization of a vascular graft in clinical settings can be achieved either

by high cell seeding density or by creating surfaces on which endothelial cells

adhere and grow to a confluent layer (Sipehia et al. 1996).

In most in vitro studies the vascular endothelial cells are cultured on either glass

or plastic cover slips and then subjected to flow conditions. However, this

method is not adequate for studying the dynamics of cell adhesion on solid

surfaces and therefore Brian Lin (2000) developed a flow system for testing the

cell responses to shear as well as a method for studying the various

morphological and physiological effects of flow on endothelial cells cultured on

solid biomaterials. It is known that endothelial cells form monolayers in vivo

which line the vascular wall and serves as a selective barrier between flowing

blood components and the vessel walls (Nerem et al. 1998). The endothelium

provides a non-thrombogenic surface, which allow for the diffusion of nutrients

and gases (Nerem et al. 1998).

Dynamic cell seeding involving cell attachment to microcarrier scaffolds

during rotating culture, showed evidence of a lower rate and extent of

proliferation compared to control cells cultured under non-rotating conditions

(Botchwey et al. 2001).

2.9.3.2. Cell differentiation

Cell-cell communication between multiple cell types in tissues is essential to

maintain differentiated cell function. Organ regeneration and tissue engineered

constructs require coordinated cell communication to produce and maintain

differential functions of several cell types simultaneously. Below is an example

of the complexity and novelty in grafting two different cell types to achieve

preliminary success in organ culturing. In 2001 Yamato Masayuki et al.

(Masayuki et al.) utilized patterned surfaces to produce a successful heterotypic

cell co-culture. Using Bovine plasma fibronectin in Dullbecco’s phosphate-

buffered saline (PBS) solution at 20oC and adding hepatocytes initially adherent

at 37oC for 24h and consequently having their temperature reduced to 20oC

following which endothelial cell suspended in culture medium at 37oC were

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added to the patterned dishes in which the hepatocytes remained adhered to the

ungrafted surface area.

In the case of the liver, which is extremely complex structurally and

functionally, most researchers are concentrating on some aspects and cannot

replicate the anatomy and physiology of the human organ. Even though it looks

like replicating blood vessels is much simpler than creating an organ, here also

we have at least two types of cells performing different functions and their

interactions are still an object of many studies.

According to Ramm (2000), myofibroblasts are the primary cells responsible

for increased matrix deposition in hepatic fibrosis. In chronic cholestatic liver

injury, one of the earliest events in the development of hepatic fibrosis is the

activation of hepatic stellate cells and portal fibroblasts to cells with a

“myofibroblasts-like” phenotype, which are largely responsible for the

increased deposition of extracellular matrix components, including collagen,

observed in hepatic fibrosis

2.9.3.3. Possible improvement in endothelial cell growth

Covering the luminal surface of a vascular prosthesis with endothelial cells is a

process that may require the presence of growth factors (GFs) and extracellular

matrix support. Endothelialization could be improved by combining both GFs

and an extracellular matrix analogue. Sirois et al. (1993) carried out

experiments with human umbilical vein endothelial cells to determine which of

a number of different biological substrates made of type I or IV collagens,

gelatine, fibronectin, fibrin, laminin, chondroitin sulphate, heparin or hyaluronic

acid could be used to support endothelial cell culture. Apart from the different

surfaces endothelial cell growth supplement (ECGS) was incorporated in (for

group 1) or overlaid on (for group2) the substrates; or present in medium (for

group 3); or absent (for group 4). Growth was relatively stable for the first 48

hours, but later in groups 1, 2 and 4, cell death was observed on all the

substrates except for fibronectin. In group 3 where the ECGS was present in the

medium, growth increased and confluence was reached within 5-8 days on all

the substrates except for gelatine and type I collagen. Those experiments

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suggest that continually delivered growth supplement in a fresh soluble form

seemed to be the appropriate condition to obtain an endothelial cell lining.

Synthetic vascular grafts do not spontaneously endothelialize in humans and

require some form of anticoagulation to mainly patency. Bhat et al. (1998)

studied and reviewed various methods of EC seeding by pre-seeding synthetic

graft materials such as expanded polytetrafluoroethylene (ePTFE) and

polyethylene terephthalate (PET) with endothelial cells (ES). The results

indicate that a heterogeneous ligand treatment of graft surfaces using avidin-

biotin and Fn-integrin attachment mechanisms increased cell seeding efficiency,

initial cell retention and cellular spreading.

Bruder et al. (2001) studied the phenomenon of low mortality rate in southwest

France by determining changes resulting from the interaction of endothelial cell

with resveratrol (a component of wine). Resveratrol treatment leads to increased

adherence of BPAEC (bovine pulmonary artery endothelial cells) under

simulated arterial flow conditions and the cells were evenly distributed

throughout the area of the cover slip exposed to flow. When compared to the

control sample, a significant percentage of resveratrol-treated BPAEC remained

attached to the plastic cover slip after 2 min and 5 min flow challenge (no cells

were left attached in the control after 5 minutes of flow conditions testing).

2.9.4. Difference between static and dynamic conditions for cell

seeding and cell adhesion

One of the major focuses of recent studies in cell adhesion has been the big

difference between cell adhesion in vitro and in vivo (or in vitro under

conditions mimicking the in vivo conditions). It has become apparent that the

seeding technique has a great role in the success of the cell adhesion and thus,

the tissue growth. Brief comparisons of the currently used approaches will be

discussed in this section.

There are currently a number of methods used for cell seeding. Some of the

most popular ones are:

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• Passive cell seeding, where the scaffold is placed in media with

suspended cells. This method uses gravity as a means of cell adhesion,

and the number of cells adhering is lower than in dynamic cell seeding.

Dynamic cell seeding, where there are a couple of different approaches -

either the scaffold is not moving and is fixed so that media and

suspended cells flow through it either at a constant rate or pulsatile flow,

or the scaffold is moving through the media with cell suspension either

rotating, being shaken or in other ways floating through the media.

Endothelial cells (EC) covering the surface of a prosthetic material which

comes into contact with the blood could potentially enhance the non-

thrombogenicity of the surface. In order to create such a surface, the EC must

become attached to the surface, spread and ultimately form a monolayer. Jarrell

et al. (1991) came to the conclusion that a new method of attachment of EC –

by filtering EC onto the graft luminal surface (dynamic seeding) – had a 2 to 5-

fold increase in EC attachment when compared to gravity forced cell

deposition.

One of the difficulties facing the development of a bioartificial liver is that

hepatocytes show little ability to proliferate under the usual culture conditions,

and an adult liver normally contains >1011 parenchymal hepatocytes in humans.

Hepatocytes tend to lose their metabolic functions rapidly within a few hours in

suspension culture and thus cannot resist a long immunization process lasting

several hours.

Cell seeding is one of the key procedures in the construction of tissue-

engineered organs. Yang et al. (2001) used a packed-bed reactor utilizing

porous poly vinyl formal (PVF) resin as a 3-D scaffold to achieve high-density

cultures of hepatocytes (above 1x107 cells/1cm3 substrate) and long-term

maintenance of metabolic function to create a bioartificial liver. The cell

seeding method they used was centrifugal cell immobilization which achieved

improvement of efficiency was improved to about 70% after a serial centrifugal

cell immobilization process.

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2.9.4.1. Electrostatic endothelial cell seeding method

A feasibility study was conducted (Bowlin and Rittgers 1997) using an

electrostatic endothelial cell (HUVEC – human umbilical vein endothelial cells)

seeding technique, a static pool apparatus, a voltage source, and a parallel plate

capacitor. The HUVEC concentration and seeding times were constant at 560

000 HUVEC/ml and 30 min, respectively. The results indicated that the total

number of adhered endothelial cells was 2.4 times higher when the ePTFE had

an induced positive surface charge than without such a charge and the number

of flattened (matured) cells were 8.1 times higher compared to controls. Those

results indicate that electrostatic interaction is an important factor in both the

endothelial cell adhesion and spreading processes and suggested that the

electrostatic seeding technique may lead to an increased patency of small

diameter (<6mm) vascular prostheses (Bowlin and Rittgers 1997).

2.9.4.2. Dynamic cell seeding technique

Dynamic cell seeding of tubular scaffolds can be achieved with higher density

when the scaffold actively moves through the media, via rotation for example.

If a magnet is attached to the ends of the scaffold or is inserted in the tube and a

magnetic field is applied using the same principle as when stirring chemicals,

more cells attach due to the higher collision rate between cells and scaffold.

Surely, any other method for moving the scaffold through the media will

produce similar results. However, careful evaluation of the collision force needs

to take place before this type of dynamic seeding is used, as high force might

damage the cells, affecting their viability and long-term functional and adhesion

abilities.

An alternative method of dynamic cell seeding would be to have the scaffold

fixed in place while the media and suspended cells are flowing through the

scaffold. Here again we have a collision force, but it is one-way collision as

only the cells are moving (in the previous methods the scaffold was moving in

random directions and thus creating a variety of collision forces and angles).

Thus, we believe that this method for dynamic cell seeding is less damaging to

the cells and thus have created a bioreactor, where the scaffold can be fixed and

the media with the cell suspension can be pumped (both continuously and

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pulsatile) through the scaffold. Details on the construction of the bioreactor and

its function are presented in the Bioreactor chapter later in this thesis.

An investigation on hepatocyte transplantation using biodegradable polymer

matrices as an alternative treatment to end-stage liver disease was made by Kim

et al. (2000). In such procedure one of the major limitations has been the

insufficient survival of an adequate mass of transplanted cells. They

investigated a novel method of dynamic seeding and culture of hepatocytes in a

flow perfusion system. The conclusion of that study was that hepatocytes can be

dynamically seeded onto biodegradable polymers and survive with a high rate

of albumin synthesis in the flow perfusion culture system.

Dynamic cell seeding may however not be suitable for all applications. An

example of such case is the novel approach to grow in vitro mineralised bone

tissue utilizing lighter-than-water, polymeric scaffolds in a high aspect ratio

rotating bioreactor (Botchwey et al. 2001). Dynamic cell seeding, used in this

study, and cell attachment to micro-carrier scaffolds during rotating culture

showed a lower rate and extent of proliferation than those cultured on non-

rotating controls.

In any case, a flow perfusion system could be developed and used for the

dynamic or static cell seeding of 3-D resins and vessel grafts. With this in mind

the Bioreactor was developed as part of this thesis.

2.10. Scaffold requirements Ideally, a scaffold should have the following characteristics:

• Be highly porous with an interconnected pore network for cell growth

and to allow the flow transport of nutrients and metabolic waste;

• Be biocompatible and bioresorbable with controllable degradation and

resorption rates to match tissue replacement;

• Have suitable surface chemistry for cell attachment, proliferation, and

differentiation; and

• Have mechanical properties to match those of the tissue at the site of

implantation.

Apart from these universal requirements there are specific requirements

depending on the type of tissue to be grown. Scaffolds for heart valve have to

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take into account the high rate of calcification, while the scaffolds for arteries

are more exposed to thrombosis. The changes that occur in the graft before and

after implantation have to be monitored.

Using a scaffold made out of a totally biodegradable material will ideally leave

us with a 100% cell tissue vessel at time of implantation, thus, minimizing the

problems which normally occur following implantation.

The following are some of the most desirable characteristics of in vitro seeded

blood vessels prior to implantation:

• Endothelialised blood-contacting surface

• Cellular potential for extracellular matrix synthesis, remodelling and

repair

• Appropriate heterogeneity, anisotropy and amount of extracellular

matrix

• Stable geometry but potential growth with the patient

• Stable mechanical properties

• Absence of harmful immunological and other inflammatory processes

• Resistance to tissue overgrowth

• Resistance to infection

• Chemical inertness and lack of hemolysis

• Easy and permanent insertion

• Minimal thrombogenicity

A major limitation of any in vitro grown tissues is the resultant stiffness of the

cultured construction (Shinoka 2002).

The creation of small size grafts is an area of concentrated research. Grafts

smaller than 6mm in diameter have specific requirements of the scaffold

material, physiological conditions and time for cultivating, cells differentiation

etc.

Most studies on small size grafts have been directed to arterial vessels cultured

with mammalian cells. The material used to build the scaffold needs to be

strong enough not to dissolve before the new vessel has been formed, but once

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the new structure is completed, it needs to degrade. This is a challenge not just

for the small grafts. There are suggestions that increasing the cultivation time to

8 weeks can improve the vessel morphology and mechanical characteristics

(Niklason et al. 2001).

Creation of vascular grafts that mimic the native vessel in terms of mechanical

responses, elasticity and endothelialization is the focus of many studies

(Greenwald and Berry 2000; Mitchell and Niklason 2003). A study by

Nicklason et al. (1999) provides an example of the successful creation of small-

diameter grafts using biodegradable polyglycolic acid scaffolds with chemically

modified surface (with sodium hydroxide), under pulsatile and non-pulsatile

conditions in vitro (in a bioreactor) for 8 weeks.

2.11. Scaffolds and scaffold materials The term scaffold is used to describe the graft, made of biomaterial in the

desired shape, which will be the base onto which the seeded cells will adhere

and consequently grow. In this study a number possibilities for scaffolds were

investigated, differing from each other by shape and/or material.

Scaffold materials cover a large range of materials and can be divided in

numerous categories, which can include, but are not limited to:

• Biodegradable (covering the range from highly (polylactic-co-glycolic

acid) to minimally biodegradable (segmented polyurethane)) or non-

biodegradable

• Made out of polymer or metal (although for the purpose of cell seeding,

plain or modified glass is also in use, it is not used as a scaffold

material)

• Smooth surface, knitted, woven, non-woven, moulded scaffold

• Made of one polymer or co-polymer mixture

• Purely synthetic, purely natural or a combination of the above

In recent years one research area, which has attracted attention is in vitro tissue

growth on scaffolds fabricated from different materials. These techniques are

used for the growth of ligament, bone, cartilage, soft tissue, blood vessels and

even whole organ growth, as is the case for the liver and skin. The scaffold

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material must satisfy a number of requirements with respect to the application

of the “new body part” and cell type used to build the tissue structure.

While some of the materials used have been shown to be effective in certain

applications, others have been rejected, and even there is little or no knowledge

on the behaviour of materials for other applications.

Scaffold material can be classified based on mechanical properties:

• Stiff scaffolds, with minimally elastic or rigid properties (glass,

metal and some polymers). These materials are used in models where

the wall movements can be neglected. In this thesis a glass model is

used for LDA measurements because of its transparency although the

lack of flexibility of the wall of the vessel was deemed a limitation.

• Moderate compliant scaffolds, with some flexibility (most polymer

scaffolds). These are the most commonly used ones for tissue culture of

blood vessels as they, to some degree, mimic the movements of the

vessel wall.

• Highly compliant scaffolds (such as thin rubber). Although better

representing the elasticity of the blood vessel wall, these are difficult to

keep in shape and can deform more than the natural vessel they model.

Many studies over the past three decades have shown the importance of the

elasticity and compliance of vascular grafts being as close to those of the native

vessel as possible. Thus, mimicking the properties of the vessel where the graft

will be implanted is a pre-requisite for the success of the grafting. This has been

reviewed in more detail later in this chapter as well as in the following chapter

on Methodology.

Cell adhesion and proliferation on biomaterials is a key issue in the study of

cell-biomaterial interaction (Ellingsen and Lyngstadaas 2003; Van Kooten and

Von Recum 1999). With the development of new disciplines within

biomaterials research such as tissue engineering and cellular therapy,

information at molecular and structural levels is needed in order to envisage and

design biomaterials that bring out specific and functional cell responses.

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The inner surface of a scaffold which is the point of contact with the blood can

be smooth, rough or porous (Ellingsen and Lyngstadaas 2003; Mori 1998). The

first ones are considered less thrombogenic, the second ones are also less

thrombogenic and preferred for vascular grafts, and the third one in still

controversial.

Usually, grafts fail due to one of the following four reasons (Mori 1998):

• Technical failure within days of the operation

• Failure within weeks due to inherited thrombogenicity of the graft

• Failure within months due to progressive occlusion of the graft

• Late stage failure (over a year) due to degradation and structural changes

of the graft

It is also important to find alternative techniques to suturing of the grafts, as

compliance of the vessel and the graft are mismatched at the point of the suture,

and thrombi formation is higher around the joint (Mitchell and Niklason 2003;

Mori 1989).

2.11.1. Comparison of materials

In recent years, apart from donor or animal blood vessel transplantation, a push

for artificially creating a vascular graft resulted in many new materials being

developed. Some natural polymers are used because they have better material-

blood cell interaction and they promote the maintenance of cell differentiation

(Langer and Vacanti 1993). On the other hand, they are difficult to control, thus

synthetic polymers, which are easy to control in terms of rate of degradation,

chain length and molecular weight are used as an alternative material. A

combination of both types of polymers would presumably be the ideal material

for vascular grafts. So far no ideal material has been found, although some

materials show promising results.

In 1999 researchers (Van Kooten and Von Recum) determined the formation of

focal adhesions and fibronectin fibrillar structures by human fibroblasts and

human umbilical vein endothelial cells adhered to fibronectin-precoated,

smooth, and textured silicones as a function of time. Textures consisted of

parallel ridges and 0.5 mm deep grooves with a width of 2, 5, and 10mm. Cells

did not proliferate on the silicone surfaces without fibronectin pre-adsorption.

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Cells adhered to glass removed all the pre-absorbed fibronectin, whereas on

silicone, they did not.

Sefton et al. (2001) performed a series of assays for the evaluation of

hemocompatibility of cardiovascular devices in 2001. Leukocyte and platelet

activation was studied by them and the materials used were tubes (inside and

outside surfaces) 5-7mm in length. Heparinized whole blood (1 U/ml heparin)

was incubated inside the tubes. The summary of SEM results after 1h exposure

to heparinized whole blood (1 U/ml) showed the following (Table 2.10.1):

Pellethane® (PEU) A little fibrin, occasional platelet, a few rbcs; moderate

fibrin with more rbcs, rare plt; red cells, fibrin, increased

spread platelets

NH4 plasma treated PEU

(PEU-NH4)

Some to moderate activated platelets, plus leukocytes and

rbcs

H2O plasma treated PEU

(PEU-H2O)

Increased fibrin/platelet rbc aggregates; pseudopodial to

fully-spread platelets

Fluorinated PEU (PEU-

fluorine)

High number of activated platelets plus secondary

pseudopodial platelets

Polyethylene imine

treated PEU (PEU-PEI)

Activated leukocytes

Heparin treated PEU

(PEU-heparin)

Activated leukocytes

Polyethylene (PE) Non-reactive for the most part; a few areas of activated

platelets

H2O plasma treated PE

(PE-H2O)

A few activated leukocytes & platelets

CF4 plasma treated PE

(PE-CF4)

Fibrin masses, some with rbcs

Nylon Moderate amount of spread platelets

Latex Fibrin masses, thrombi

Table 2.11.1.1. Comparison of different materials (Sefton et al. 2001)

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In 2001 researchers (Meng-Yen and Jui-Che) carried out a study on

biocompatibility and thrombogenesis of self-assembled monolayers (SAM)

containing alkanethiol with phosphonate ester and phosphonic acid

functionalities on gold model surface.

In contrast to a polymer material modified by plasma processing or a grafting

reaction, the SAM technique can provide a densely packed, well-defined, and

highly ordered surface.

Those examples are given to illustrate the diversity of materials used or studies

nowadays. Materials more appropriate for blood vessel scaffolding are

discussed further in this chapter.

When we were looking into the available materials from which to choose,

surgical suture and mesh material was considered the most suitable for building

the scaffold. More focused research pointed out that the absorbable sutures

might be suitable. These are the most popular type of sutures that lose their

tensile strength, to various degrees, after 60 days under the skin (i.e. implanted):

• Catgut Suture

• Treated Catgut Suture (Mild Chromic Gut)

• Polyglycolic Acid Suture (Dexon)

• Polylactic Acid Suture (Vicryl)

• Polydioxanone (PDS)

• Polyglyconate (Maxon)

For some of the materials on this list a brief comparison was made and is

presented below with more detailed comparison further in this chapter:

Vicryl is made out of polymer – Lactide and Glycolide; the coating is

Polyglactin 370 and Calcium stearate. The suture is completely absorbed

between days 60 and 90. The coating mixture forms an absorbable, adherent,

non-flaking lubricant. All these components are water repelling, which slows

tissue fluid penetration and absorption. This suture is commercially available

coated and uncoated (Johnson & Johnson Gateway).

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Vicryl is hard to shape, thus is difficult to use to manufacture complicated

shapes and has proven unsuccessful for the creation of a tri-leaflet heart valve

(Shinoka 2002).

Polydioxanone (PDS): Complete Suture absorption day 180 after the operation,

which might not be suitable for vascular grafting.

Maxon has the advantage of being available as a monofilament. A possible

disadvantage is the long degradation time - complete absorption of suture is

from day 180 to 210 post operative.

Suture materials

Polyglycolic, polyglactic acid polymer-derived sutures (PGLA) such as Vicryl

and Dexon are absorbed via enzymatic degradation by hydrolysis (Aderriotis

and Sandor 1999).

Irradiated polyglactin 910 (IRPG) Vicryl Rapide (Ethicon, Somerville, N.J.)

was the suture we used in our tissue experiments and it is a braided co-polymer

of glycolic and lactic acid that is surface treated with polyglactin 370 and

calcium stearate and has received gamma radiation (Johnson & Johnson

Gateway).

Name Materials Absorption Support Novelty

Vicryl (Braided)

90%Glycolide 10%L-lactide Coating: polyglactin 370 and calcium stearate

65%strength at 14 days, 40% still at 21 days, Complete absorption by 70 Days

Still not established safety in cardiovascular and neural tissues

Panacryl (Braided)

95%lactide 5%glucolide coated with 90%caprolactode and 10%glucolide

Between absorbent and non-absorbent Strength after 3months 80% and 60% after 6 months

For long-term wound support- up to 6 mnths

Not for use in cardiovascular tissues

Coated Vicryl Rapide (polyglactin 910)

90%glucolide 10% L-lactide (C2H2O2)m(C3H4O2)n Coating polyglactin37& calcium stearate

All initial strength is lost by 10-14 days. Full absorption by day 42 via hydrolysis

For short support within 7-10 days

Only available undyed

Monocryl (poliglecaprone 25)

Copolymer of glycolide and epsilon-

Strength after day 7 60-70%, 30-40% after day 14. Total strength loss

Not for use in cardiovascular tissues

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Monofilament

caprolactone at day 28. Total absorption via hydrolysis day 91-119.

PDS ІІ (polydioxanone) Dyed and Clear Monofilament

Prepared form the polyester, poly (p-dioxanone) (C4H6O3)x

Original strength after 14days 70%, 59% after 28days, 25% after 42day with total absorption after 6 months

Not indicated in adult cardio-vascular tissue, but used in pediatric cardio-vascular tissue Not to be used in conjunction with prosthetic devices

Table 2.11.1.2. Comparison of commercially available suture materials

In the tissue culturing tests done as part of developing the bioreactor, cell

adhesion on Vicryl (braided) was performed, chosen for its gradual degradation,

low cost and easy accessibility in any surgical clinic. Those experiments are

discussed in brief in the Methodology Chapter of this thesis.

Mesh used in surgery

Historically (Seiler and Mariani 2000), collagen-coated Vicryl mesh composed

of a watertight film of bovine collagen and polyglactin 910 (Vicryl, Ethicon)

has been used. Because of the theoretical danger of transmitting bovine

spongiform encephalitis with bovine collagen, this material was later changed to

a fleece composed of polyglactin 910 and poly-p-dioxanone (Ethisorb, Ethicon).

The patch is available in different sizes, softens when immersed for a few

seconds in liquid, and can be cut to any size. It is easily handled and relatively

inexpensive, and elicits a minimal inflammatory response.

Some researchers (Burg et al. 1999) created a scaffold using a Vicryl mesh

folded into the desired shape with its edges heat-sealed leaving the centre

empty.

Both Vicryl woven and Vicryl knitted mesh are prepared from uncoated,

undyed fibre identical in composition to that used in Vicryl synthetic absorbable

suture. They are available in single sheets sized 15x15cm and 30x30cm.

Minimal absorption of the mesh until 6 weeks and complete absorption between

60 and 90 days of implantation provides a good operation range for tissue

repair. The knitted one has less strength but maintains 80% of the original

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strength after 14 days. The woven one has double initial strength but only about

23% remains after 14 days. The use of neither has been established for

cardiovascular tissue (Johnson & Johnson Gateway).

We recommend manufacturing the mesh in the desired scaffolding shape

instead of cutting sheets of mesh to appropriate size, and then folding it up to

achieve a 3-D scaffold. This would avoid the non uniform mesh of the scaffold

due to the joining of the ends of the sheet, which creates a region similar to the

one of sutured shunts to native vessels, thus being an area of changed

hemodynamics and increased thrombogenicity.

2.11.2. Techniques for manufacturing scaffolds

A number of different processing techniques have been developed to design and

fabricate three-dimensional (3D) scaffolds for tissue-engineering applications.

The imperfection of the current techniques has encouraged the use of a rapid

prototyping (RP) technology known as fused deposition modelling (FDM). The

FDM method is an RP technique that builds a physical model by depositing

layers of thermoplastic material one at a time.

Results from a study (Hutmacher et al. 2001) showed that FDM allowed the

design and fabrication of highly reproducible bioresorbable 3-D scaffolds with a

fully interconnected pore network. This study looked at the mechanical

properties and in vitro biocompatibility of polycaprolactone scaffolds with

honeycomb-like pores and a porosity of 61 ± 1% and two matrix architectures -

the first scaffolds had a 0/60/120o lay-down pattern and the second scaffolds

with a 0/72/144/36/108o lay-down pattern. The second pattern had a

compressive stiffness of ½ of the first pattern and 1% offset yield strength in air

nearly 25% lower, and in simulated physiological conditions over 25% lower

compressive stiffness and over 10% lower in the 1% The stress-stain curves

obtained for both scaffold architectures demonstrated the typical behaviour of a

honeycomb structure undergoing deformation. In vitro studies were conducted

by the authors (Hutmacher et al. 2001) with primary human fibroblasts and

periosteal cells showing that both cells could proliferate, differentiate, and

produce a cellular tissue in an entirely interconnected 3D Polycaprolactone

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matrix. The above technique was given as an example and other techniques can

be used for FDM.

2.11.3. Dacron prostheses

Human umbilical vein endothelial cells (HUVEC) on knitted and woven Dacron

prostheses were compared with HUVEC on smooth surfaces (tissue culture

polystyrene, PET film, and Natrix) with regard to adherence, growth, and

susceptibility to injury by neutrophils (PMN) in 1995 (Tunstall et al.). For

prosthetic materials of given macroscopic dimensions, more endothelial cells

(ES) adhered to these materials than to smooth surfaces. However, the

prostheses had a greater effective surface area as determined by the number of

EC at confluency. When this parameter was taken into account, fewer EC were

found adhering to prosthetic materials per unit effective surface area than for

the smooth surface substrates. Growth on prostheses was clearly inferior to that

on smooth surfaces, and EC on prostheses were more prone to attack by

activated PMN than on smooth surfaces. These differences may reflect the

topographic differences in cells attached to fibres where they assume more

distorted shapes by stretching to span gaps in the fibres.

2.11.4. Non-woven scaffold

Highly porous grafts (loosely woven or knitted) can cause blood leakage

through the wall, thus a careful evaluation of the porosity and the method for

manufacturing of the scaffold needs to take place.

The results of a study performed by Pahernik et al. (2001) indicated that non-

woven polyurethane sheets supplied a biocompatible support structure for

functionally active high-density cultures. According to the researchers, the

optimal cell density in a three-dimensional culture configuration was 1x106

cells/cm2.

Polyester non-woven fabric (Naruse et al. 2001) has been successfully used to

culture porcine hepatocytes.

Textured surfaces stimulate adhesion and cell growth, as opposed to smooth

surfaces such as polyurethane (Belanger et al. 2000).

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2.11.5. Modified ePTFE and PTFE

There is evidence to suggest thrombogenesis in polytetrafluoroethylene (PTFE)

grafts used in patients with renal failure (Anderson et al. 1980;Rapaport et al.

1981) is due to changes in graft diameter or unevenly distributed pressure and

shear stress.

McKeown et al. (1991) have modified expanded PTFE (ePTFE) with a simple

chemical modification which facilitates endothelialization without using

thrombogenic cell adhesives.

When comparing ePTFE and PTFE with or without coating, as in any other

comparison, the surface treatment and type of cells (including cell seeding

method) have to be the same. Such a study (Sipehia et al. 1996) using human

umbilical vein and human saphenous vein endothelial cells on ammonia plasma

treated ePTFE and PTFE has shown that both have significantly better cell

growth on the coated surface compared to uncoated material.

There are animal studies supporting the benefits of using PTFE in TIPS.

Following failure of a polyethylene terephthalate (PET) stent due to thrombosis,

PTFE TIPS implanted in the same animals showed patency and good function

(Haskal et al. 2002). Similar findings have been recently reported (April 2004)

by a group in UK (Barkell et al. 2004) as a retrospective study in 100 patients, 9

of which had PTFE covered TIPSS following stenosis of the primary uncovered

stent, and the rest had covered stent placement only. They have reported

improved patency rate, which might reduce the invasive portography follow

ups.

2.11.6. Biodegradable scaffold

A synthetic biodegradable scaffold consisting of polyglactin and polyglycolic

acid fibers has been seeded in vitro with mixed (endothelial and fibroblasts) in

(Shinoka et al. 2000). The key benefit of a biodegradable polymer scaffold is

that it will degrade in vivo as seeded cells proliferate, so the long-term presence

of foreign materials would be avoided. In that study the mesh used as scaffold

consisted of a polyglactin woven mesh sandwiched between either two

nonwoven PGA mesh sheets or a polyglactin woven mesh reinforced with

copolymer of caprolactone and lactide, in both the mesh matrix had more than

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95% porosity before seeding. This provides a strong shape and also ensures the

degradation of the material. Some of the other requirements of course include

the ability to determine the degradation rate.

Synthetic biodegradable scaffold consisting of polyglycolic acid fibres, seeded

with fibroblasts and subsequently coated with endothelial cells could be used

and the rate of degradation can be monitored and modified (Shinoka 2002).

2.11.7. Other types of scaffolds

The large variety of scaffolding materials currently used for blood vessel and

hepatocyte cultivation makes it impossible to describe all materials and

methods. Apart from the ones mentioned previously, in this part of the chapter

some examples of other scaffold options are given.

Highly porous biodegradable poly(D,L-lactic-co-glycolic acid) with

immobilized galactose onto its internal surface has been successfully seeded

with rat hepatocytes (Park 2002).

Highly porous chitosan (partially deacetylated derivative of chitin) with fructose

onto the inner surface has shown improved cell density with rat hepatocytes (Li

et al. 2003). Endothelial cell adhesion to the fibronectin in artificial

extracellular matrix proteins shows good prospects for small-size vascular grafts

(Heilshorn et al. 2003) when seeded with human umbilical vein endothelial

cells.

For growing cardiomyocytes from rats, fibrin glue has been shown to be a

suitable ground matrix (Kofidis et al. 2003) with cells viable even in the

periphery of the tissue block.

Collagen components were successfully used for myocardial grafts (Kofidis et

al. 2003).

Tests carried out by Bèlanger et al. (2000) showed poor endothelial cells (from

human umbilical vein) and fibroblasts (from skin) adhesion on all polyurethane.

Polycaprolactone (PCL) is a semi-crystalline bioresorbable polymer with a low

glass-transition temperature of –60oC, a melting point of 60oC, and high

decomposition temperature of 350oC with a wide range of temperatures that

allows extrusion. A study (Hutmacher et al. 2001) using pellets of PCL

extruded and manufactured into 3-D scaffolds tested them in a phosphate-buffer

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saline (PBS) solution preconditioned in PBS for 1 day, or at ambient conditions.

Polycaprolactone has been used in many studies due to its relatively simple

extrusion.

2.12. Coating of biomaterials The benefit of coating grafts prior to implantation can be seen from studies,

which compared coated and uncoated grafts. Most studies suggested that intimal

hyperplasia, which leads to graft failure, develops faster in uncoated grafts

(Debski et al. 1982; Mori 1989).

Although monoprotein coatings of biomaterials with either natural adhesion

molecules or genetically designed analogues have been used to assist

attachment and spreading of endothelial cells, such treatments were found

unsatisfactory in maintaining the integrity of the endothelial surface under

turbulent flow conditions (Nikolaychik et al. 1994).

There are different requirements and expectations from coating of devices for

implantation and external use (still in contact with the blood). For

extracorporeal circuits reduction of the inflammatory response can be achieved

using coating with poly(2-methoxyethylacrylate) (Saito et al. 2000), diamond-

like carbon film (Alanazi et al. 2000) and heparin coating.

Apart from improving endothelial cell adhesion, coating of biomaterials is

important for improving the thrombogenesis of shunts. As was discussed

earlier, the development of thrombi is one of the main disadvantages of TIPS.

This could be eliminated by coating the shunt with materials that discourage the

formation of thrombi (Collons and Sarfeh 1998).

Rough surface of the in vitro created blood vessel could lead to hemolysis of the

blood due to shear stress (Yousef 2001), hence smoothness of the graft needs to

be taken into consideration when choosing the scaffold material and cell

seeding methods.

2.12.1. Coating the material with a layer of endothelial cells

The endothelium has a number of vital roles in the functioning of the blood

vessel and allograft, some of which are releasing of pro-fibrotic cytokines,

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taking on circulating leucocytes, proliferation of vascular smooth muscle cells

and deposition of extracellular matrix proteins (Waller et al. 2003).

For the improvement of vascular graft patency, an endothelial cell (EC) lining is

desirable as has been demonstrated by Seifalian et al. (2001), where they used

human umbilical vein endothelial cells (HUVECs) seeded onto graft materials

(CPU, ePTFE, and Dacron). EC seeding significantly improves the blood

compatibility of artificial surfaces (Bos et al. 1999). It is also essential that the

EC remains viable after being seeded onto the prosthetic graft. The polymers

currently used are Dacron and ePTFE, while a new compliant polyurethane

(CPU) is under clinical trial. Clinical studies have shown Dacron causes

thrombosis and neointimal thickening in low-flow states, so currently it is only

used in large-vessel implantation. The only alternative to autologous materials

in small-vessel reconstructions is ePTFE, however the long-term patency rate of

autologous implants is approximately 75% after 2 years, whereas the rate of

ePTFE is only about 30% (Esquivel and Blaisdell 1986). The principal reason

for late graft failure is neointimal hyperplasia and clinically it accounts for

about 80% of occluded vascular grafts (Chervu and Moore 1990). Such poor

long-term patency rates have driven the current search for new polymers and

novel biological vascular grafts with superior biocompatibility. EC seeding

improves patency rates and reduces early thrombus formation in some animal

models (Herring et al. 1994; Schneider et al. 1988; Stanley et al. 1982).

Endothelial cell attachment to a synthetic substrate, which surface was

chemically modified using either laminin or fibronectin, was studied (Scott and

Mann 1990) using an in vitro model system. That study confirmed that

biomolecules increase the attachment rate of endothelial cells to synthetic

substrate.

The adhesive interactions between blood cells and endothelial cells in regions of

low shear stress are assisted by the prolonged contact blood elements have with

the vessel wall (Henry and Chen 1993; Hinds et al. 2001; Lappin et al. 1998).

Small-diameter vascular grafts, for example, tend to have an early and high

occlusion rate (Hedeman et al. 1998). Cell seeding on the luminal surfaces of

small-diameter prostheses may provide an antithrombotic lining and improve

both the short-term and the long-term patency rates (Hedeman et al. 1998).

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Kam and Boxer (2001) have described a method for endothelial cell seeding on

protein-micro patterned lipid bilayer surfaces, whereas the cells were cultured in

DMEM (Dulbecco’s modified Eagle’s medium) supplemented with 20% fetal

bovine serum under standard cell culture conditions (a humidified, 5% CO2/

95%air environment maintained at 37oC). Endothelial cells seeded onto glass-

supported bi-layers of egg PC had cell density reduced by 85% compared to

those on plain glass. This minimal adhesion of endothelial cells onto fluid lipid

bilayers supports the previous reports, which showed that lipid structures

inhibited fibroblast adhesion. Other conclusions that can be made are that the

bigger the gap in the surface, the better adhesion, and the thicker the strings of

the material, the lower cell spreading. The reduction of cell spreading has also

been associated with a decrease in cell survival. This example highlights the

importance of understanding the underlying principles of cell adhesion before

attempting to seed cells on grafts.

2.12.2. Coating with fibronectin and E-selectin

Conjugates of albumin and heparin provide non-thrombogenic coatings for

vascular grafts (Bos et al. 1999; Bos et al. 1998) which can be further enhanced

by adding fibronectin.

Heparin coating has shown to decrease the initial thrombus formation, but does

not favour endothelialization (Mori 1989, Chapter 22; Noishiki and Miyata

1986).

Heparin coating has to be done so to minimise the negative impact the coating

can have on the coated polymer (Tayama et al. 2000), and some studies with

Bioline coating system, although showing improvement in biocompatibility in

terms of leukocyte and complement activation do not improve platelet

activation and coagulation, thus have minimal clinical benefit.

In the study by Van Wachem et al. (1988) cellular fibronectin was deposited on

tissue culture polystyrene during the adhesion and spreading of cultured human

endothelial cells (HEC) indicating that the ability to deposit cellular fibronectin

onto a polymeric surface is a condition for the spreading and proliferation of

HEC.

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The role that surface properties play in influencing the extent of

endothelialization of polymer surfaces was investigated by Absolom DR et al.

(1988). Their research suggested that for a wide range of polymer surfaces the

degree of endothelialisation (but not cell spreading) for both porcine and bovine

endothelial cells were directly related to polymer surface tension, i.e. the higher

the surface tension the higher the endothelialisation.

The benefit of 90o every 15 minutes for an hour graft rotation method is that the

presence of E-selectin allows for cell adhesion at higher wall shear stresses

under steady conditions compared to uncoated models (Hinds et al. 2001). It

has also been shown in that study that cell adhesion of coated models under

pulsatile flow is lower in magnitude and distribution compared to steady flow.

In addition, the adhesion rates before and after the stenosis region (if any) were

very different depending on the type of flow present (Hinds et al. 2001).

2.12.3. Carbon-deposited surface and Diamond-like Carbon coating

The adhesion and proliferation of endothelial cells can be drastically improved,

according to Kaibara et al. (1996), when cells are cultivated on a carbon-

deposited polymer surface pre-coated with either fibronectin or laminin (which

are most likely the reason for cell adhesion).

All mechanical devices in contact with blood have to be conditioned to prevent

thrombogenecity as much as possible. Not only clot formation is dangerous to

the patient, but it also disturbs the normal work of the device. Diamond-like

carbon films, having physical properties in-between diamond and graphite, are

hard, chemically inert and un-reactive. They have been used to coat rotary

blood pumps showing good biocompatibility (Alanazi et al. 2000). Although

Alanazi et al. (2000) showed better compatibility of diamond-like carbon coated

polymers compared to heparin and polycarbonate coated, they still do not

advice those devices to be used long-term.

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2.12.4. Coated with grafted adhesion peptides

Decreased hepatocyte adhesion to polymeric constructs limits the function of

tissue engineered hepatic assist devices, but the study by Eric S. Carlisle et al.

(Charlisle et al. 2000) where they grafted adhesion peptides to polycaprolactone

(PCL) and poly-L-lactic acid (PLLA) using pulsed plasmadeposition in order to

mimic the in vivo extracellular matrix in an attempt to enhance hepatocyte

adhesion showed promising results..

2.12.5. Encapsulation of the graft

In order to avoid or minimise immunosuppression resulting from the need to

administer medication for the prevention of graft rejection, encapsulation

(immuno-isolation) has been developed as a novel technique. Some of the

limitations of this method include the type and size of the available

microcapsules and the optimal site for transplantation. The usual site is the

peritoneal cavity, but application through the portal vein has been tested in pigs

(Toso et al. 2003), while intra-portal administration is performed in most islet

allografts transplantations. Encapsulation of the graft has been shown to

increase the portal pressure initially and then decrease it to a normal level

(Toso et al. 2003) thus this method, if further studied and proven effective,

could complement the portal vein shunts currently in use.

2.13. Why pulsatile flow is important From the large number of reports on modelling of blood vessels, a very limited

number concentrate on, or take into account, the effects of pulsatility on the

model (Charara et al. 1999). There is also a lack of literature examining the

waveforms and pulsatility in patients with portal hypertension (Barakat 2002).

Under flow conditions vascular endothelial cells change their shape and

orientation depending on the nature of the flow (Nerem et al. 1998; Shiomi et

al. 2000; Verweyveld 1997). The flow can be laminar, pulsatile, turbulent, and

random or a combination of these. Increasing the level of shear stress benefits

the cell growth until a certain point, after which increased levels of shear stress

result in a decrease of cell replication. The aim is to find the right level of shear

stress so optimal conditions for cell growth can be achieved.

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Cell adhesion rates before and after the stenosis region (if any) is very different

depending on whether the flow is steady or pulsatile (Hinds et al. 2001). Under

pulsatile flow, contrary to steady flow, adhesion in the stenosis is significantly

greater than in the recirculation.

The importance of pulsatile flow for arterial growth in vitro has been confirmed

by Niklason et al. (1999), where the strength of small diameter bovine vessels

cultured in vitro onto polyglycolic acid scaffold (with supplemented medium)

was even higher than the one of native human saphenous vein.

Portal vein flow has been usually described as non-pulsatile or continuous

(Keller et al. 1989; Taylor et al. 1985), although several authors have described

pulsatile flow (Barakat 2002; Gallix et al. 1997; Koslin et al. 1992; Partiquin et

al. 1987).

One common opinion is that the portal vein represents a low-pressure system

without significant pulsatility of flow (Hűbner 2000), thus the flow can be

modelled either as non-pulsatile or as continuum flow with minor pulsations.

Other studies examining the pulsatility of the flow in the portal vein (Barakat

2002) show a clear presence of pulse in the vein.

Both points of view have good arguments in their favour, and the limited

number of studies evaluating the presence of pulsatile flow in the portal vein

allow for either modelling technique. In this thesis pulsatile flow was simulated

in both computer and experimental simulations as this added complexity to the

study of flow through obstructed vessel.

2.13.1. Waveforms and pulsatility

A study carried out to examine the relationships between the hepatic vein

(HVW) and portal vein (PVW) waveforms in patients with cirrhosis and portal

hypertension (Barakat 2003; Barakat 2004) has shown the difference between

those waveforms and the ones in healthy subjects. In all healthy subjects the

PVW recorded by Doppler Ultrasound was pulsatile, however from the 148

patients with liver cirrhosis, 37.8% had flat PVW, and only about a quarter of

them also had a flat HVW. One of the most important conclusions of another

study by Barakat et al. (2002) was that the percentage of flat waveforms

increased with the progression of liver cirrhosis. Taking this into account, one

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can assume flat PVW in advanced and end stage cirrhosis in most patiens. On

the other hand, the same study showed that there were differences between

individual patients and, as such, individual study of each patient is required to

evaluate the form of the PVW. This effect is taken into account from the author

of this thesis by suggesting the proposed model be individualised for each

patients’ portal blood flow velocity, pressure, pulsatility, stenosis, hematocrit,

cell adhesion etc.

The pulsatility index (PI) is inversely related to pulsatility ratio, where:

PI = [(peak maximum velocity) – (peak minimum velocity)] / peak maximum

velocity, or can be expressed as PI = [peak systolic velocity – end diastolic

velocity/ mean velocity (Tasu 2002).

In healthy subjects (Barakat 2002) the PI has been calculated as ranging

between 0.21-0.58 (with mean 0.39 ± 0.1), whereas in patients with cirrhosis it

was mean 0.23 ± 0.1

Interestingly, only 38% of cirrhotic patients had PI less than 0.2, i.e. almost

non-pulsatile and high pulsatility (0.5) was rare (in less than 2%). In all healthy

subjects however there was some pulsatility.

Portal vein mean flow velocity decreased in patients with chronic liver diseases

(Chawla et al. 1998). During pregnancy however the portal blood flow

increases in most women (Van Splunder et al. 1994).

Portal vein pulsatility and spectral width can be used as indicators for early

hemodynamic changes in patients with CLD (Barakat 2002).

Pulsatility is determined in this case as portal vein waveform fluctuations over

time (Gallix et al. 2002).

In healthy people the portal vein pulsatility ratio is around 0.66±0.08 and is

negatively correlated with right atrial pressure (Rengo et al. 1998).

Experimental studies have shown that arteries cultured in vitro under pulsed

flow more closely mimic the native artery than those cultivated in a non-

pulsatile environment (Bilodeau et al. 2005; Niklason et al. 1999) and also have

better and longer patency.

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There are differences in the literature in describing the flow of blood to the liver

through the portal vein. In this work, two scenarios have been considered:

modelling using steady flow and then introducing pulsatility.

2.13.2. Endothelial cells – graft relationship

The establishment of an early blood-contacting endothelialised surface may

improve the graft-host relationship. In some studies endothelial cells seeded on

fibronectin-treated polyester elastomer (Greisler et al. 1989) show no

differences in EC adhesion between high- and low-shear conditions or proximal

vs. distal graft segments.

Endothelial cells in arteries are sensitive to pulsatile flow and flow-induced

shear stress as shown through numerous studies by L. Schalina over the past

two decades. If pulsatile flow is transmitted to veins a similar response of the

endothelial cells could be expected, and this could explain some of the changes

in the vessel shape (Schalina and Liepsch 2001).

2.13.3. Effect of hemodynamics on endothelial cells

Endothelial cells at the arterial wall subjected to various mechanical stresses

due to the flow of blood, the most important of which are the pressure force

acting normal to the cells and the shear stress acting tangentially and they both

vary with time (due to the pulsating flow) (Lin 2000; Nerem et al.1998; Shiomi

et al. 2000). Studies of the effect of flow on cell proliferation have been carried

out, and these have shown that the rate of cell replication decreased with

increased levels of shear stress.

Endothelial cells in vivo are highly adherent and can resist disruption by

hemodynamic shear stress at levels that far exceed physiological conditions.

Ballerman and Ott (1995) found that endothelial cells exposed to chronic shear

stress in vitro, applied in a stepwise fashion over several days, are provoked to

become “tightly adherent to the substratum and exhibit more differentiated

features”. Thus, pre-conditioning of endothelial cells seeded on vascular grafts

with stepwise shear stress in vitro could be used to improve endothelial cell

retention and differentiation for subsequent in vivo use.

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A novel perfusion system for culturing human endothelial cells on small-

diameter PTFE grafts under defined pulsatile shear stress (Dunkern et al. 1999)

has been developed in 1999. This perfusion system enables culture of

endothelial cells on PTFE grafts to confluence under a wide range of shear

stress conditions in order to benefit form stronger adhesion of endothelial cells

to the substrate. The application of pulsatile flow with high shear stress (6.6

dyn/cm2, 5min) to a graft endothelialised under perfusion didn’t cause any

damage to the cells, whereas a shear stress of 3 dyn/cm2 applied for 5 min has

been shown to wash more than 50% of endothelial cells off PTFE graft when

cultured to confluence under static conditions (Dunkern et al. 1999).

Endothelialised vascular grafts can be pre-conditioned to defined shear stress

values.

With the use of ultrasound and pulsed Doppler Kiserud et al. (2003) have

described pulsation in the left portal branch in all studied subjects (10 fetuses

under 33 weeks with smaller diameter of the portal vein which might be the

reason for the pulsatility index being higher than that in the umbilical vein).

Another point of that study was that pulse wave and blood flow run in the same

direction in the left portal vein. To the best of our knowledge there are only few

studies mentioning or assuming pulsatility in the portal vein. Thus, the flow

model has been developed for both pulsatile and non-pulsatile flow in this

thesis.

2.13.4. Vessel compliance

Arterial tissue is continuously exposed to a dynamic mechanical environment

induced by pulsatile blood flow that exerts shear stress (tangential force),

pressure (normal force), and cyclic stretching. Recent biomechanical studies

have strongly implied that a combination of all these factors contributes to the

maintenance or regeneration of vascular tissue architecture (Hiromichi et al.

2001). Compliance mismatch between native artery and artificial graft has been

long discussed as a cause of graft failure during a prolonged period of

implantation of an artificial graft with a small diameter. In their study Sonoda

Hiromichi et al. (2001) have realised the artificial graft using segmented

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polyurethane (SPU), which has been proven to be a highly durable, minimally

biodegradable synthetic elastomer in order to address this issue.

2.14. Other methods and approaches for addressing the

problems of cirrhosis of the Liver and vessel transplant in

general This brief discussion on liver assist devices is in addition to that described

previously in relation to methods for overcoming portal hypertension.

Hepatocyte systems for extracorporeal devices as well as implants are under

rapid development with somewhat promising results. Implants could provide a

permanent solution to end-stage liver disease, if successful. On the other hand,

extracorporeal devices have two advantages: control over the medium

surrounding the cells and decrease in the chance of immune rejection. The main

two disadvantages of the extracorporeal assist devices are the access of blood

between the body and the apparatus and the need of hospitalisation for the

duration of the procedure. In general, while extracorporeal devices are for

temporary use to assist a recovering liver or to serve as bridge until

transplantation, the implantable hepatocyte-based methods are for long-term

treatment with the intention of improving liver function. In both methods, the

ability to isolate and culture liver cells without losing their differentiated

functions on a large scale is still a challenge. Isolation of liver cells includes

mechanical dissociation or enzymatic digestion (Puviani et al. 1998). The later

one has the benefit of more viable cells as a percentage of liver volume in the

suspension after isolation. Establishment of a bioartificial liver support system

using genetically modified hepatocytes is a potential approach to improve the

treatment of severe liver failure. Kawashita et al. (2000) designed a method for

medicated gene transfer porcine hepatocytes growth for the creation of

bioartificial liver support system.

Another, even more rapidly progressing area is development of artificial blood

vessels, predominantly arteries. Many materials have been used for large

diameter grafts for arteries with some success, and some of them were discussed

earlier in this chapter. For the small diameter grafts, more inert materials

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(heparin coated or endothelial lined) could be more appropriate. A challenge is

how to coat the material to increase biocompatibility, and in the same time

decrease adhesion of blood cells and substances to the graft. Heparin coating of

coronary artery bypass graft, for example, has shown little clinical or biological

benefit, but might be useful for at risk patients or some more complex

procedures (Collart et al. 2000).

Even though most of this research can be utilised for designing artificial veins,

due to histological and functional differences, this area needs more research and

special consideration.

Most treatments incorporate some of the detoxifying functions of the liver,

using dialysis, charcoal hemoperfusion, immobilized enzymes and exchange

transfusion (Langer and Vacanti 1993).

Recently, interest in hepatocyte transplantation has increased and the clinical

experimentation of hepatocyte-based liver support has attracted many

researchers. Promising reports of clinical usage of isolated allogenic

hepatocytes in hepatocellular transplantation and of xenogenic liver cells in

constructing bio-artificial liver support systems come from various groups

worldwide. From a clinical perspective the advantages and use of isolated

hepatocytes for supporting an acutely devastated liver or a chronically diseased

liver, and for correcting genetic disorders resulting in metabolically deficient

stages, are major reasons for the interest in this approach (Puviani et al. 1998)

Gene transfer and epithelial cell transplantation technologies play important

roles in the development of new therapeutic concepts for liver diseases (Ott et

al. 2000).

Animal experiments have been carried out on orthotopic liver

autotransplantation and even though reports on such procedures have been

promising (Gruttadauria et al. 2001; Urban et al. 2002), the impact this

technique has on the long-term function of the liver has not been studied. Many

recent animal experiments have shown promising results, and some have shown

liver regeneration after partial hepatectomy. In rats, for example, the original

liver mass could be restored after few days (Nadal 2000). This thesis does not

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look into this or similar techniques, as the possible shunt model is for

maintaining the blood flow, not redirecting it away from the liver.

In vitro growth of thick tissues, like the liver, as part of culturing the organ in

laboratory conditions so far have not been successful (Kaihara et al. 2000).

Healthy liver cells were shown to grow well on sponge-like silicon chips during

a two-week trial carried out by a group from the University of California, San

Diego (Gornam 2001).

2.15. Future work The fused deposition modelling (FDM) method is a rapid prototype (RP)

technique that builds a physical model by depositing layers of thermoplastic

material one at a time. It was deemed that this is the most precise technique as

FDM reproduces an exact copy from a computer file (usually a CAD file) of the

scaffold. It lays the filament working on one plane at a time and can achieve a

smooth surface if desired for seeding purpose. The technical difficulty we had

using this “ideal” technique was the diameter and stiffness of the filament to be

fed into the FDM machine. Our machine could not be manipulated to accept

various thickness filaments, as the lead rolls were factory-fixed at a specific

diameter. This prevented us from using any of the biodegradable materials in

our simulations in the form of 3-D scaffold, thus leaving this goal for future

work in collaboration with investigators having access to more advanced FDM

machines. We have carried out some experiments with biodegradable filaments

and now the next step in building 3-D scaffolds could prove to be an optimal

combination of desired properties of scaffold in terms of material,

manufacturing, biocompatibility and cell proliferation.

FDM manufacturing of the scaffold was not carried out as part of this thesis,

because the feeding mechanism of our FDM machine was not suitable for soft

material, nor was the filament diameter adapted. These issues are now

addressed as part of another Ph.D. project in our department.

The reason for choosing a suture material was the high rate of cell adhesion in

vivo on the suture surface, which provides wound healing at the site of suturing

after surgical procedures. In vitro, the suture has also demonstrated a good

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degree of cell adhesion, thus promising a good rate of scaffold proliferation

prior to implantation of the graft.

2.16. Conclusions There are many ways to combat portal hypertension and its complications. All

have their advantages and disadvantages, and there are examples in which they

are more or less effective than other methods. Thus, all treatment methods need

to be available in any medical centre undertaking hepatic surgery, and in each

individual case the appropriate approach needs to be chosen. In some cases a

combination of different treatments might be the correct approach, and the

search for novel methods needs to continue.

This project started as an investigation of the development of a micro-axial

pump for liver perfusion and was changed due to the lack of materials to

develop the device, the difficulty in driving and monitoring the pump over a

long period of time and the damage it can cause to the blood flow.

Thrombosis and other occlusions in the portal vein change the flow dynamics

and the prognosis of the disease. The modelling done in this thesis to compare

flow behaviour in a simplified portal vein model with and without blockages

can be used to further understand the impact this complication has on the

outcome for the patient.

In this chapter a review of different scaffold materials and methods for cell

seeding have been discussed. Pulsatile flow was discussed in general and in

relation to its application to blood flows in the portal vein. The importance of

pulsatility flow for culturing the new vessel and other current methods for liver

disease treatment were briefly presented. Experimental work indicates that more

studies are needed to investigate the relationship between scaffold porosity and

cell adhesion in both steady and pulsatile flow conditions. The review carried

out in this chapter presents the basis and ideas for future work.

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CHAPTER 3

Commonly used methods and parameters in blood flow

modelling and thesis specific used theoretical and experimental

methods

3.1 Introduction In this chapter the different methods for blood flow measurements and Laser

Doppler Anemometry (LDA) are presented. Flow properties and behaviour of

the blood as well as common assumptions and simplifications used to describe

its behaviour, both theoretically and experimentally, are given and the

principles of the Computational Flow Dynamics (CFD) model used in this

thesis are described. Recommendations for future research are given at the end

of this chapter based on observation made during the LDA measurements or the

computer model results.

3.1.1. Methods for measurement of portal blood flow

Portal blood flow is not easy to measure and in most cases requires an invasive

procedure (either adding substances to the blood or biopsy). However, non-

invasive methods are being developed and tested.

Doppler ultrasound (DUS) is used to confirm the normal hepatic structure,

presence of transformations in the portal vein and the patency of the left

intrahepatic portal system in patients with extra hepatic portal hypertension due

to idiopathic portal vein thrombosis (St Moravec 1987).

To determine the patency of the portal vein a color-flow DUS can be used

before a shunt is performed. When there are vague findings on color-flow DUS,

venous-phase visceral angiographies should be undertaken (In Seok Kang

2002).

Nowadays, there are several methodologies for diagnosing natural shunts

and liver blood flow (Durst et al. 1976), although many methods, such as Au

colloid and 32P-chromophosphate, are no longer in use. Some examples are

given below:

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• Clearance methods measure the rate of disappearance of radioactive

indicators from the system. Some of them are briefly outlined below.

• Intake methods are based on the ability of the liver to remove the

indicator (radioactive elements, bromsulphthalein etc.) Some of the

most common ones are described below.

• Portal or transcolonic scintigraphy – intake of radiochemicals from

the intestinal tract (usually of technetium 99m pertechnetate). The

method involves monitoring whether the chemicals bypass the liver

and are detected in the heart first, which shows that the blood has

been shunted away from the liver. It does not provide information on

the location of the shunt, but the degree of shunting can be

determined with good accuracy.

• Contrast radiography using a marker dye injected into a vein

draining the intestine is accompanied by radiographs and allows

good visualization of the portal vein and shunts, but is invasive and

is only to be used to assist surgery.

• Contrast-enhanced agent detection imaging (Youk et al. 2003) has

been shown as useful and as effective as helical computed

tomography for evaluating the therapeutic effects of interventional

therapeutic procedures for malignant hepatic masses. It is usually

used to supplement ultrasound or Doppler measurements.

• Continuous indocyanine green infusion method is one of the

invasive methods (Miyamoto et al. 2003) evaluating the metabolic

activity of the hepatocytes.

• Ultrasonography is a non-invasive approach used for detection of

intrahepatic shunts. Doppler ultrasonography is used intraoperative

for shunts and flow visualization (Sekido et al. 2002). Using this

method, the cross-sectional area of the vessel provides information

on the size and quantity of intimal thickness next to the wall. It can

be used for the visualization of vessels, shunts or even spontaneous

collaterals.

• Doppler ultrasound is another non-invasive method and is used

primarily for detection of extrahepatic shunts. It has also been used

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to investigate the turbulence intensity in the carotid bifurcation in

vitro, showing promising results (Glanemann et al. 2001; Kok et al.

1999; Levick 1995; Poepping et al. 2004). Pulsed Doppler

ultrasonography can be used to measure velocity waveforms in the

portal vein branches (Kiserud et al. 2003).

• Colour Doppler ultrasonography has been used for non-invasive

measurements of renal resistance and pulsatility (Koda et al. 2000).

• Contrast harmonic ultrasound has been successfully used in dogs for

determination of macrovascular and perfusion patterns (Salwei et al.

2003).

• Contrast-enhanced computer tomography (Miyamoto et al. 2003).

• Liver biopsy is an invasive method used when shunts cannot be

detected or there are multiple extrahepatic shunts.

• Ultrasound guided biopsy is used for visualization in patients with

portal vein thrombosis (Spircher et al. 2003) for detection of

hepatocellular carcinoma. Other applications of this method are still

to be tested.

• Doppler sonography is non-invasive and can be transcutaneous or

intravascular (Glanemann et al. 2001; Haag et a;. 1999; Marsutani et

al. 2003) and specially used for pulsatile flow (Hűbner et al. 2000).

As a cross-sectional imaging technique, it is very useful for

demonstrating aneurysms of the portal venous system and bland or

neoplastic portal vein thrombosis (Gallego et al. 2002). This method

is also effective for long-term TIPS follow-ups ( Žižka et al. 2000).

• Doppler sonography aided by Levovist for improvement of the

diagnostic efficiency (Drelich-Zbroja et al. 2003; Fischer et al.

1998).

• Colour velocity imaging quantification takes into account the blood

flow profile and might have advantages over conventional Doppler

flow measurements (Kawasaki et al. 1999).

• Helical computed tomography has shown to be a useful, less

invasive method for 3-D anatomic analysis of large intrahepatic

portosystemic venous shunts (Nagafuchi et al. 19996).

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• Laser Doppler light scattering instruments for measurement of flow

within blood vessels in vivo have been under extensive development

since the early 1970’s (Bonner and Nossal 1981).

• Measurements of blood flow using pressure, or flow parameters of

other nearby vessels (Bolondi et al. 1990; Burns and Jaffe 1985;

Deplano et al. 1999; Gibson et al. 1993). Some of those methods are

presented later in this chapter in 3.1.3. Flow measurements are based

on pressure gradients, flow in other blood vessels, or numerical

estimation.

3.1.2. Generic flow measurements

3.1.2.1. Electromagnetic Flowmeters

Magnetic flowmeters invasively measure the blood velocity and are known to

have good linearity, direction sensitivity, capability of monitoring pulsatile flow

and capability of monitoring flow in intact blood vessels. The basic operational

principles of this method involve an electromagnetic field around a vessel and

the use of the blood’s properties as a conductor of electricity. This technique

was used by Schenk et al. (1962) to measure the hepatic flow, which showed

that on average 26% of the total hepatic blood is being supplied by the hepatic

artery (with upper limit of values 50%). Another use of this method has been

the measurements of shunt operations. The flow in this case can indicate the

success of the anastomosis. One of the negatives of this method is the invasive

approach as the probe needs to be around the vessel and an in vivo calibration is

required; this causes added risk and discomfort to the patients.

3.1.2.2. Ultrasonic Methods

The Ultrasonic Doppler Technique was first implemented for blood flowmeters

by Satomura and Kaneko (1961) so that an ultrasound beam was directed onto

the blood flow and the frequency changes produced in the backscattered

radiation were monitored. The Doppler shift is a term used to describe the

frequency shift when the sound source moves relative to the observer, i.e. to

higher frequency when approaching the observer and to lower frequency as it

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moves away. The absorption coefficient α of most biological tissues is

approximately proportional to frequency f.

In blood, the ratio α / f increases with frequency up to about 10MHz (Rowan

1981). The error in the measurement can occur due to unknown dimension and

orientation of the blood vessel and the shape of the velocity profile. In practice

the angle between the blood vessel and the beam used is 30-45O although the

ideal angle is 0O, i.e. the ultrasound beam is parallel to the direction of the flow.

This is not possible for a non-invasive technique and the compromise increased

angle is used. One of the main practical limitations of this method is not being

able to identify the direction of the flow, thus, a Directional Doppler instrument

has been designed. For clinical use the pulsatile index is defined as PI = peak-

to-peak velocity /mean velocity; as this formula is independent of probe-to-

vessel angle. This index (PI) increases from the aorta to the small vessels and

can be used with accuracy even when there are vessel occlusions up to 50%

(and some authors claim more than 50%). The two most frequently used

instruments are the continuous wave Doppler and the pulsed Doppler. The first

records not only the target but all moving structures in the way of the beam and

is used to create an outline of the blood vessels, whereas the pulsed Doppler

(Kiserud et al. 2003) is used to create a two-dimensional section of the vessel,

i.e. vessel diameter as well as the blood flow can be measured.

Some researchers have used measurements of the hepatic arterial acceleration

index (the dependency between the total cross-sectional area and the early

systolic acceleration) for non-invasive evaluation of portal hypertension (Tasu

et al. 2002).

In flowing blood, when measurements are made with a Doppler ultrasound, the

Doppler-shift echo is given by the red blood cells, and its size is much smaller

than the specular reflection given by solid tissue interfaces (Burns and Jaffe

1985).

Other applications of Doppler methods are presented later in this chapter.

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3.1.2.3. Electrical Impedance Techniques

These plethysmography methods use the change in the impedance in the blood

vessel due to the systolic and diastolic cardiac cycle. Venous occlusion via cuff

is the principle for blood flow measurements; hence these are non-invasive

measurement techniques. The main applications of this technique are deep vein

thrombosis monitoring, monitoring stroke volume (pulse) and blood flow

through the brain.

3.1.2.4. Tracer Techniques

Metabolically inert tracers, which have the ability to diffuse rapidly between

blood and tissue, are used in these methods. They are based on the principle of

conservation of mass, so that the quantity of the substance taken up by tissue for

one unit time is equal to the quantity of arterial blood brought to the tissue

minus the quantity of venous blood carried away from the tissue. One of the

most popular for liver blood flow measurement is the 133Xe injection technique.

It consists of external monitoring of the clearance of gamma ray activity after

the injection of 133Xe. This method does provide information on different

segments of the liver and the mean blood flow within those segments, but

provides no information on the overall variability of blood flow in the whole

organ.

3.1.3. Flow measurements based on pressure gradients, flow in other

blood vessels, or numerical estimation.

In this part of the thesis measurement techniques are discussed with the

recognition that they have been used in studies of the portal blood flow and

most likely will be used in the future for the establishment of a unified

mathematical formula for portal flow calculation. The different methods for

measurement and visualisation are discussed further in this chapter.

One important factor affecting the accuracy of any blood flow measurement

would be the impact of gravity on flow, and in relation to this, the posture of the

patient during the measurements.

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Due to the collapsible nature of veins, even small changes in venous pressure

will have large effects on the venous blood flow (Levick 1995).

Portal hypertension combined with ascites, variceal bleeding, esophageal

varices or splenomegaly is making it more difficult for diagnostic methods to

measure portal vein flow.

Portal circulation is regulated by three factors - blood pressure, blood flow and

vascular resistance - as are other splanchnic circulations. To evaluate the degree

of abnormality in the portal circulation, the portal venous pressure and the

portal blood flow have to be measured (Moriyasu et al. 1986; Richardson and

Withrington 1981, 1978; Sherlock 1974; Ueda et al. 1971). The values of both

volume and pressure are regulated and affected by several other factors. Such

factors are, for instance, intrahepatic changes like fibrosis that can elevate the

portal venous pressure and decrease the portal blood flow (Sherlock 1974).

Splenic enlargement can increase the portal blood flow by increasing the splenic

blood flow and, in turn, elevate the portal venous pressure (Ueda et al. 1971).

The formation of extrahepatic porto-systemic collateral pathways can lower the

portal venous pressure and decrease the inflow volume of portal blood.

Intrahepatic shunts between the portal and hepatic veins can lower the

intrahepatic resistance of the portal blood flow and decrease the portal venous

pressure (Moriyasu et al.1986). So the factors that affect the portal venous

pressure and the volume of the portal blood flow are complicated. Therefore the

data for both pressure and flow volume should be treated with care, as it is

difficult to completely comprehend the hemodynamics of portal hypertension

simply by measuring the portal venous pressure or the portal blood flow.

However, by focusing on the perfusion of the portal blood flow through the

liver, that is, the inflow to the liver through the hepatic portal vein and the

outflow from the liver through the hepatic vein, there are only three factors

influencing the hemodynamics that need to be considered: volume of portal

blood flow, portal perfusion pressure, and portal vascular resistance (Moriyasu

et al. 1986; Richardson and Withrington 1981, 1978).

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3.1.3.1. Portal vein blood flow measurement based on pressure gradient

between portal and hepatic veins

One of the most commonly seen problems with those approaches is the error

from the zero point, which is usually external to the vein. There are suggestions

that using an internal zero point will eliminate most of the source of error in

percutaneous transhepatic measurement of portal and hepatic veins pressure

gradient (Gibson et al. 1993). As use of wedged pressure is a well-established

technique, it needs to be noted that it does not always reflect the portal pressure

and depends on the underlying disease for each patient (Gibson et al. 1993).

In patients with thrombosis without cirrhosis the spleen-to-wedged hepatic

venous pressure (WHVP) gradient has shown to be more than double, and the

splenic-to-free liver vein pressure gradient more than 50% increased when

compared to patients with cirrhosis but without thrombosis (Keiding et al.

2004).

3.1.3.2. Measurements based on pressure drop within the blood vessel

In an idealized vessel, flowing blood would speed up in an area of narrowing.

Then, the velocity change could be used to determine the magnitude of the

pressure drop. In a blood vessel, as in any tube, there are cohesive forces

between the nearby laminae and the moving blood, so there is some resistance

to acceleration of a single stream within the whole lumen vessel, i.e. the so

called drag of viscous friction (Burns and Jaffe 1985). The drag is dependent on

the viscosity of the blood and the size of the narrowing of the blood vessel. The

computer model presented in this thesis has tried to take this into account and

simulations of the same flow with variations in the viscosity of the fluid only

were carried out and are presented in a later chapter of this work.

The pressure drop in this method can be described by the following equation:

Pressure drop = kinetic energy gain (due to acceleration) + viscous loss

(due to friction) + inertial energy gain (due to changing flow rate)

(3.1.3.2)

This is the Bernoulli equation in its physical representation as given by Burns et

al. (1985).

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3.1.3.3. Volume flow measurements

There are several types of measurements in this category. To use the velocity

profile method, the velocity profile has to be known and needs to be constant

during a cardiac cycle. For the cross sectional method, the area needs to be

assumed circular and has to be known.

Portal blood flow mean velocity was calculated according to Moriyasu et al.

(1986) as maximum velocity times 0.57 and expressed as centimetres per

second. Portal blood flow volume was calculated as portal blood flow mean

velocity times cross-sectional area and expressed as millilitres per minute. This

estimate is known to be quite inaccurate, but it is the most widely used method

to measure portal blood flow non-invasively. Resistance indexes from the left

(L) and right (R) branches of the hepatic artery were similar in both controls

and cirrhotics (cirrhotics: L-PI, 1.35 ± 0.37; L-RI, 0.72 ± 0.08; R-PI, 1.27 ±

0.42; R-RI, 0.69 ± 0.09). Portal blood flow was not significantly different in

cirrhotic patients and controls (866 ± 363 vs. 948 ± 303 ml min-1; P = 0.27)

(Shiomi et al. 2000).

This brief review of methods is given to help better understand the complexity

of blood flow measurements and not to critically examine the existing methods.

3.1.3.4. Measurements of Portal Vascular Resistance

According to a study (Sacerdoti et al. 1995) involving 31 controls and 171

cirrhotic patients with (n=13) and without (n=158) portal vein thrombosis, who

were measured using duplex Doppler ultrasonography (DDU), hepatic arterial

resistance indexes increased in cirrhosis, particularly with portal vein

thrombosis. To the authors, the pathophysiology of the increase in hepatic

arterial resistance seemed to be parallel to that of portal resistance. Peak

systolic, end diastolic, and temporal mean velocity were determined and the

pulsatility index (PI) and the resistive index (RI) were calculated according to

the following formulas:

PI= (Peak Systolic – End Diastolic Velocity) / Mean Velocity, and

RI = (Peak Systolic – End Diastolic Velocity) / Peak Systolic Velocity

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Measuring the portal vascular resistance in patients with portal hypertension

(Moriyasu et al. 1986) has shown that in patients with cirrhosis, both the portal

venous pressure and the portal perfusion pressure were elevated, the wedged

hepatic venous pressure was also higher than normal, and there was only a

slight presinusoidal pressure difference. The reduction of portal blood flow was

insignificant, but the portal vascular resistance was five times as great as that in

the control group (Moriyasu et al. 1986).

Richardson and Withrington (1981) have also estimated the vascular resistance

of the normal human liver assuming that the portal venous pressure is between 5

and 10 mmHg, and the hepatic venous pressure is between 1 and 2 mmHg.

Increased resistance to portal blood flow is the main indicator of portal

hypertension and is mainly determined by the morphological changes occurring

in chronic liver disease (Bosh and Garsia-Pagan 2000).

3.1.3.5. Measurements of the Hepatic and Portal Venous Pressure

Under normal conditions the portal vein pressure is around 9mmHg, while the

pressure in the hepatic vein is close to 0mmHg, thus the pressure difference is

around 9mmHg. This pressure difference increases with the increase of the

severity of portal hypertension.

One of the fundamental studies that compared free portal venous pressure and

wedged hepatic venous pressure was carried out by Viallet et al. (1970), which

recognised the importance of evaluating the porto-hepatic gradient. Good

correlation between Wedged Hepatic Venous Pressure (WHVP) values and free

portal vein pressure (FPVP) values was seen in all 43 patients in that study and

the maximum difference between these two parameters was 4mm Hg (WHVP

ranged from 9.5 to 40 mm Hg and FPVP ranged from 9 to 38mm Hg). The

difference between FPVP and free hepatic venous pressure (FHVP) (porto-

hepatic gradient) was calculated (range between 3 and 24mmHg) and used as an

index of portal hypertension (Viallet et al. 1970).

Hepatic venous pressure gradient (HVPG), the difference between the WHVP

and FHVP, can be used to describe the severity of the portal hypertension –

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mild when HPVG=12mmHg and severe when HPVG>12mmHg (Tasu et al.

2002).

Another study of cirrhosis due to hepatitis C infection (Deplano et al. 1999)

revealed that the difference between WHVP and portal vein pressure (PVP) was

inversely related to the portal flow velocity and directly related to the portal

vascular resistance. Predominantly left portosystemic collateral blood flow can

be observed when WHVP is higher than PVP Deplano et al. 1999).

3.1.3.6. Relationship between vessel diameter and velocity

In chronic liver diseases, especially in liver diseases accompanying portal

hypertension, the diameter of the vessel increases and the flow velocity

decreases. From the experimental study in (Moriyasu et al. 1986), in which the

authors had varied the diameter of the vessel and the viscosity of the blood, it

was concluded that the ratio between the mean and the maximum velocities was

constant as long as the flow was not turbulent.

3.1.3.7. Measurement of Portal blood flow

In the early 1970’s, a study for assessing the portal blood flow (PVF) carried

out by Sovak et al. (1999) showed that as the disease progresses, PVF may

become hepatofugal due to the high hepatic artery flow and hepatoportal

shunting.

Strandell et al., (1973) undertaking measurements in 8 conscious patients, noted

that portal vein blood flow varied from 0.82 to 2 litres/min-1 and hepatic artery

flow from 15 to 56% of total hepatic flow. It is important to note that two

patients with identical total hepatic blood flow may have a markedly different

distribution of flow between the portal vein and hepatic artery.

In 2001 a study by Bolognesi et al. (2001) created a formula for prediction of

the grade of portal hypertension as follows:

[splenic pulsatility index * 0.066 - 0.044] * portal blood flow (3.1.3.7)

This group showed good accuracy in the study of 19 initial patients and 21

further patients.

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A study performed by Richter et al. (2000) in 36 cirrhotic rats showed that flow

reduction of the hepatic artery did not influence portal venous blood flow.

Normally, the portal vein provides the major blood supply of oxygen to the liver

(Mathie andAlexander 1990). In cirrhosis, the change of the ratio of portal

venous to hepatic arterial blood flow in favour of the hepatic artery may sustain

oxygen delivery and exert a protective effect on organ function and integrity

(Mathie and Blumgart 1983).

3.1.4. Doppler flowmetry

Doppler flowmetry is useful in assessing the direction, presence and

characteristics of blood flow in hepatic vessels (Bolondi et al. 1990).

Determining the presence of blood flow is the easiest Doppler finding, and the

absence of Doppler signal from the portal vein confirms the presence of

thrombosis.

Because the portal vein is large in size and has around 3-4 centimetres of

straight course (Bolondi et al. 1990), measurements using Doppler are quite

accurate, provided they are done in small time intervals (4-6 seconds) and are

repeated to minimize error.

3.2. Laser Doppler Anemometer

3.2.1. Principle of Laser Doppler Anemometry

In this work Laser Doppler Anemometer (LDA) will be used as a tool for fluid

dynamic investigations in the liquid (blood simulation). Because of its non-

intrusive principle and directional sensitivity, LDA is very suitable for flow

measurements in applications with reversing flow, or in biological systems

where physical sensors are difficult or impossible to use. LDA requires tracer

particles in the flow and transparency of the shunt. The particular advantages of

this non-invasive method are:

• velocity range from 0 to supersonic

• high spatial and temporal resolution

• no need for calibration

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• the ability to measure in reversing flows (Coherent Scientific and

Dantec Dynamics).

LDA is becoming the most used method for measurements of blood flow and

optimisation of artificial hearts and heart valve function due to its functionality.

Two-dimensional LDA is the most common method used even for complicated

structures and flow profiles like the one across heart valves. Many studies by

Grigioni, Barbaro, Daniele and D’Avenio published between 1997 and 2000

have used two-dimensional LDA and have shown the advantages of the method.

The basic configuration of any LDA consists of a continuous wave laser,

transmitting optics (including a beam splitter and a focusing lens), receiving

optics (comprising of a focusing lens and a photo-detector), a signal conditioner

and a signal processor (Figures 3.2.1.1 and 3.2.1.2). Most advanced systems

may also include traverse systems and angular encoders.

The principle of LDA involves division of the laser beam and then intersecting

the two beams using a focusing lens. Tracer particles in the flow scatter light

which gets picked up by a receiver lens and then focused onto a photo-detector.

The noise from ambient light and from other wavelengths is removed by an

interference filter mounted before the photo-detector, which passes only the

required wavelength to the photo-detector.

“The scattered light contains a Doppler shift (Doppler frequency fD), which is

proportional to the velocity component perpendicular to the bisector of the two

laser beams” (corresponds to the x axis shown in the probe volume in Figure

3.2.1.2) (Coherent Scientific and Dantec Dynamics).

The other very popular technique for flow measurements is Particle Image

Velocimetry (PIV) which allows all three velocity components to be recorded

and thus provides 3D velocity vectors for the whole area instantaneously.

Although this technique has similar advantages as LDA it was not used in this

study due to unavailability of the equipment.

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Figure 3.2.1.1. Experimental setting of LDA – basic operational principles (with permission from Coherent Scientific and Dantec Dynamics, reference (Coherent Scientific and Dantec Dynamics))

Figure 3.2.1.2. The probe and the probe volume (with permission from Coherent Scientific and Dantec Dynamics, reference (Coherent Scientific and Dantec Dynamics))

The probe volume is typically a few millimetres long. The light intensity is

altered due to interference between the laser beams, which produces fringes

(parallel planes of high light intensity) (Coherent Scientific and Dantec

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Dynamics). The fringe distance (df) is defined by the wavelength of the laser

light and the angle between the beams by the following formula:

df = λ ⁄ 2 sin ( θ/ 2) (3.2.1.)

Depending on the local light intensity, different particle passages scatter light

differently and thus provide information on the flow velocity when passing

through the probe volume.

The edge (fringe) spacing df provides information about the distance travelled

by the particle and the Doppler frequency fD provides information about the

time: t = 1/fD and velocity equals distance divided by time (V = df /fD)

Figure 3.2.1.3. Doppler frequency to velocity transfer function for a

frequency shifted LDA system (Coherent Scientific and Dantec Dynamics)

The frequency shift obtained by the Bragg cell (glass crystal with a vibrating

piezo-crystal attached, used as the beam splitter) makes the fringe pattern move

at a constant velocity (Coherent Scientific and Dantec Dynamics). The particles

which are not moving will generate a signal of the shift frequency fshift, and the

velocities Vpos and Vneg will generate signal frequencies fpos and fneg,

respectively. LDA systems which do not possess frequency shift cannot

differentiate between positive and negative flow direction and cannot measure

zero velocity (Coherent Scientific and Dantec Dynamics).

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LDA studies of the flow behaviour and velocity in varicose vein models

(Schalina and Liepsch 2001; St Moravec 1987) and flow measurements (Durst

et al. 1976; Liepsch 1978; Mori 1989, Chapter 19) have been very popular in

the last three decades.

The methodology for flow visualization used by L. Schalina and D. Liepsch

(2001) is simple and effective for the purpose of studying flow behaviour in

model veins. Part of the future studies proposed in this thesis is to use this

technique to model the portal vein flow and adjust the flow parameters in the

computer model as appropriate. The method described involves four steps:

• Obtain the vein from the patient (in the case of the portal vein, this

would most likely be during liver transplantation),

• Filling the vein from both ends by injecting silicone rubber mixed with

a hardener

• Corrode the vessel wall by dissolving the tissue in 30% potassium

hydroxide leaving a silicon cast

• Use this cast for the preparation of translucent rigid vein models with

polyester resin and for the preparation of translucent elastic silicone

models

This model (see Figure 3.2.2.1. below) can then be used for LDA measurements

of flow patterns (velocity fluctuations, shear stress on the interior wall of the

vein, non-Newtonian blood flow) using coloured dyes.

Another possible model constructed from Sylgard 184 silicone

elastomer (Hinds et al. 2001) could also be used for LDA measurements as it

has optical clarity.

Properties/ requirements of the fluid:

• The fluid used for the LDA measurements needs to have similar flow

properties to that of blood (refraction index must be same as the one of

the model n = 1.41)

• A suitable fluid could be any of the following solutions: 52% (v/v)

glycerine with a density of 1.150 kg/m3 and titanium dioxide particles

for Newtonian flow (Shalina and Liepschb 2001); 58% glycerol with a

density of 1.14gr/cm3 (Hinds et al. 2001); or 32.7% (v/v) glycerol with

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5.2% (w/v) CaCl2 in distilled water with a density of 1.1gr/cm3 and

3.625 centipoise dynamic viscosity at room temperature (Mori 1989,

Chapter 19)

• Must have added particles in the flow to allow measurements (particles

refract the laser beam)

• Must be transparent to allow the laser beam to pass through it

uninterrupted.

The usual seeding particles used for LDA measurements are polyamide seeding

particles (round but not exactly spherical) or hollow glass spheres and silver-

coated glass spheres (the silver coating increases the reflection of the laser

beam). There are many other types of particles (fluorescent polymer and

others) that can be used to perform the measurements.

In a study of blood flow in stenosis, for example the liquid used was 58%

glycerol in water (refractive index 1.412) with suspension of 10-20μm

polymethylmethacrylate particles (Hinds et al. 2001).

In the LDA measurements done as part of the research of this thesis, Meta DC

Coated Particles (Model 10037) were suspended in a glycerol solution to enable

refraction of the laser beam and allow flow measurements.

3.2.2. Models used for LDA

LDA or other visualization methods are usually used to represent flow

behaviour in arteries (Strackee and Westerhof 1993). Normally, the models

have to be enlarged to enable the measurements, and thus the Navier-Stokes

equation has to be transformed to take this into account. In the experiments

performed as part of this thesis no scaling was done and no adjustment to the

equation was needed.

The following three figures depict a three-stage model creation technique used

to create a varicose vein model for LDA measurements. It could be applied to

the portal vein in the future, the subject of this thesis.

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Figure 3.2.2.1. Silicone cast of varicose vein (stage 1) (Schalina and Liepsch

2001)

Figure 3.2.2.2. Rigid polyester resin model of the varicose vein (stage 2)

(Schalina and Liepsch 2001)

Figure 3.2.2.3. Elastic silicone rubber model based on the previous two

models (stage 3) (Schalina and Liepsch 2001)

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The final model was installed in a circulatory system using pressure valves,

piston pump and dyes (Schalina and Liepsch 2001). This model can be used for

3D visualizing of flow via LDA. A similar approach can be used to visualize the

portal vein, but due to equipment and material limitations, the model used in

this thesis was made out of glass, and hence was constructed of rigid, not elastic

walls. This limitation is acknowledged and in future work the model needs to be

compared to one made either using the above method or another method that

allows elasticity of the model vessel wall.

For example, a bifurcation as shown below can be used for 3D flow

visualization:

Figure 3.2.2.4. Representation of bi (tri) furcation (Dinnar and Raton 1981)

The model used as part of the research in this thesis (Figure 3.2.2.5 below), as

mentioned above, was glass-blown as two different variations – one without any

blockages, and the other one with three blockages, representing obstructions

respectively in the trunk and one in each or the main branches (left and right).

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Figure 3.2.2.5. Comparison between the two glass models and scale

The results from the LDA measurements using the above models of the portal

vein are presented in the Results Chapter of this thesis. A 2-dimentional Laser

Doppler Anemometer was used to measure the velocity of the flow at a number

of points within the vessel model. Once the Z plane was known from the focal

point, having the X and Y velocities were sufficient to measure the flow in the

simplified model.

3.3. Computational Fluid Dynamics (CFD) Modelling Computational fluid dynamics (CFD) has been widely used for the

characterisation and visualization of flow field as well as obtaining data on wall

shear stresses (Hinds et al. 2001; Niu et al. 2002; Xu et al. 1999; Zhao et al.

2000). CFD can use in vivo measured parameters, such as velocity and flow, as

boundary conditions (Song et al. 2000). Most beneficial for the development of

a model to be used in clinical practice is validation of the CFD results with

experimental particle tracking techniques. It is one of the aims of this thesis to

compare experimental values to CFD modelled values. In this part of the thesis

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discussion on and description of the CFD methods and proposed model are

explained. In this research the physical models were created based on the

dimensions of the CFD models for validation purposes.

The FLUENT software package has been used for a wide range of applications

to model the physiology of the human body (Fluent Europe Ltd 2002). CFD

uses numerical methods to solve the equation governing the fluid flow by

splitting the analyzed domain into small volumes and elements and a set of

partial differential equations is solved for each one of them. FLUENT allows

simple adjustment of the flow parameters and can deal with complicated models

involving a two-phase flow and provides three-dimensional visualization of the

model.

FLUENT was used for simulating flow through a pulmonary artery to predict

and visualize areas where clotting and aneurysms were most likely to occur,

based on non-invasive MRI carried out by a group at Sheffield University,

England (Thilmany 2003) and other groups (Moore et al. 1998). This group has

also shown the possibility of studying stent size and orientation by modelling

the stent location and design using this computer method. FLUENT has been

used for turbulent blood flow simulations (Varghese and Frankel 2003) and for

many non-biological simulations (like turbo machinery, wind and aircraft

models).

Some studies using a 3-D model of the aorta (Yamaguchi et al. 2002) have used

another commercially available software package (Software Cradle, Japan)

called SCRYU version 1.4, which allows for the solving of unsteady Navier-

Stokes equations for incompressible flow (high Reynolds number, no-slip at the

wall, velocity perpendicular to the aortic cross section, and zero velocity and

pressure at the outlets). An example of this work is shown below.

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Figure 3.3. Wall shear stress and flow streamline patterns at different cross

sections of the aorta using CFD analysis, where the model is based on

magnetic resonance imaging (MRI) data (Yamaguchi et al. 2002).

Similar studies were carried out by Xu et al. (1999) in the human carotid and

aortic bifurcations.

FIDAP (Fluid Dynamics International, IL USA), a general-purpose code, has

been used for computing velocity, pressure and wall shear stress in coronary

artery bypass grafts (Song et al. 2000). The assumptions made were common to

other studies, and include steady, symmetric, incompressible, homogeneous

Newtonian flow through round diameter vessels (and all vessels with the same

diameter) with rigid walls.

ABAQUS and CFX4 (Long et al. 2000; Morsi et al. 2001; Starmans-Kool et al.

2002; Thilmany 2003; Xu et al. 1999; Zhao et al. 2000) were also successfully

used in modelling and simulation of arterial bifurcated blood flow. CFX4

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provides the opportunity to simulate a moving grid of the finite element solid

mechanics multi-block structured grid created with ABAQUS. Recently,

FLUENT has been upgraded to provide similar moving grid simulations on

models created with ABAQUS or Gambit.

Materialise Mimics (Belgium) software, used for converting MRI slices into 3-

D solid models suitable for export into some of the most popular solid

mechanics modeling software (Thilmany 2003) is a good example of linkage

between non-invasive in vivo measurements and computer simulations on a

practical level.

Comparisons between 3-D ultrasound measurements in vivo have been

successfully used to generate realistic geometry, suitable for CFD simulations

(Augst et al. 2003), and multiple measurements have shown reasonable

reliability of these methods.

CFD has been used successfully in modelling post-stenotic flow in the aorta

(Niu et al. 2002), demonstrating its capabilities to simulate the wall shear stress

and model the unstable flow in that region of the blood vessel.

Even though most studies of blood flow assume Newtonian behavior (Bonert et

al. 2003; Finol and Amon 2002; Gurlek et al. 2002; Hinds et al. 2001; Marques

et al. 2003; Moore et al. 1998; Niu et al. 2002; Siro et al. 2002; Starmans-Kool

et al. 2002; Xu et al. 1999; Zhao et al. 2000), in this thesis non-Newtonian flow

has been modeled. Newtonian behavior of blood flow can be assumed for

simplicity in large vessels (aorta and large arteries) with high shear rate, which

is not the case in the portal vein. A comparison of results obtained with the

same model using parameters for Newtonian and non-Newtonian flow showed

some differences in the flow behaviour. These are presented in the Results

chapter of this thesis.

Fluid-solid mechanical interactions between the blood flow and the vessel wall

are difficult to study in vivo and computational, non-invasive methods may

provide the way to evaluate, predict and prevent fatal consequences of vascular

disease (Long et al. 2000; Yamaguchi et al. 2002).

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3.3.1. Non-Newtonian flow

A large number of blood flow studies treat blood as non-Newtonian fluid (Fung

1993; Jalan et al. 2004; Petkova et al. 2003; Sugiura 1988; Zhang and Kuang

2000). Blood constitutive equations (BCEs) provide important information

about hemorheology and hemodynamics. There have been many theoretical

(Brunn and Vorwerk 1993; Krieger and Elrod 1953; Krieger and Maron 1954;

Mooney 1931) and practical ways to tackle the problem (model the blood flow).

BCEs are related to the mechanical characteristics of blood. Different equations

have been used to solve the problem - Casson equation (Aroesty and Gross

1972; Bate 1977), Walburn equation (Easthrope 1980; Walburn and Schneck

1976), Weaver equation (Suguira 1988), K-L equation (Wang and Stolz 1994),

Bi-exponent equation and Quemada equation (Zhang and Kuang 2000). They

can be divided in two different types – Casson and Power-law. In this thesis the

non-Newtonian Power-law equations have been used for simplicity, although

the Casson model can also be applied.

A new technology/program has been developed at the Department of Aerospace

Engineering, University of Bristol, under the leadership of Dr. Chris Allen, to

predict unsteady flows. This CFD method is based on a moving mesh for

solving the flow past deforming shapes. So far it has only been tested for

Newtonian flow, but is under development for non-Newtonian flow (such as

blood). This technique, when available, could prove to be more effective and

time saving than the current CFD techniques, but until this has been tested the

well-known FLUENT operations will remain most commonly used. FLUENT is

used to model the blood flow in this thesis.

3.3.2. Numerical simulations and modelling

Sometimes, physical experiments are difficult to perform, or too expensive and

time-consuming. After the initial stage of parameter and grid formulation,

computer modelling is a reasonably rapid and inexpensive way to visualise flow

patterns.

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For simplicity, the blood vessel wall is treated as a rigid structure (Bonert et al.

2003; Gurlek et al. 2002; Marques et al. 2003; Petkova et al. 2003; Siro et al.

2002; Starmans-Kool et al. 2002; Xu et al. 1999).

In some cases, based on numerical simulations, the shape of graft vessels can be

altered to improve hemodynamics. An example is the following structure (Siro

et al. 2002):

Figure 3.3.2.1. Normal and Protrusion model vessel of prosthetics graft

connection to a blood vessel (Siro et al. 2002).

The protrusion model shows lower variation in shear stress on the wall opposite

the bifurcation compared to the normal one; hence the intimal thickening is

suppressed in the protrusion type model (Siro et al. 2002).

Due to the wide variation in the structure, function and pathology of patients,

portal vein and blood flow, each computer model needs to take into account the

clinically measured parameters (derived from imaging), the patient disease

history, and other conditions the individual might suffer from (i.e. kidney

failure, elevated blood pressure, etc.). Computer modelling therefore has to be

carried out on a case-by-case basis with regards to each patient (Long et al.

2000; Starmans-Kool et al. 2002; Thilmany 2003; Xu et al. 1999; Yamaguchi et

al. 2002; Yedavalli et al. 2001). Until a system is developed that allows rapid

modelling (within minutes) and still be based on the individual patient,

computer models cannot be used for emergency procedures. With the

development of new software, the possibility of changing the model by simply

changing the input parameters may arise. So far, and from our experience, the

simulation requires re-drawing of the grid and mesh for each case, which is in

essence the most time-consuming part of the modelling process.

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In order to minimise the cost of modelling, the use of ultrasound geometry

measurements and pulsed Doppler velocity measurement in vivo can be

successfully combined with CFD simulations (Starmans-Kool et al. 2002). This

equipment is more widely available than MRI and can be used by most medical

professionals. As with all the other methods for combining real-life

measurements and computer simulations, many assumptions need to be made to

allow for modelling.

The simulations and modelling can be validated either against clinical data or

against in vitro experiments. In this thesis, LDA was used to validate the

principle of the model created with GAMBIT and simulated using FLUENT.

3.3.3. Limitations of CFD and future work

Ideally, computer models would use in vivo measurements and geometries to

build the simulation. There is no disagreement in the literature on the benefit of

real-life geometry and hemodynamics parameters in correctly predicting the

flow behaviour in individual patients. Obtaining the data is not problematic, as

non-invasive techniques are advancing very rapidly and there is a variety

available. The limitation is in what to do with the data once available, i.e. how

to convert the data into a “readable” form for the computer software used for

the simulations. Some researchers have developed their own custom-written

computer package to transfer MRI, or MRA (magnetic resonance angiography)

data to CFD code (CFX4) (Xu et al. 1999); others have used specialised

commercially available software like Materialise Mimics (Belgium) for

converting MRI slices into a 3-D solid model suitable for export into some of

the most popular solid mechanics modelling software (Thilmany 2003). Most

modelling programs require code writing or drawing and data input directly into

the system, or imported data from limited sources (usually CAD (Augst et al.

2003)) to create the model (including grid and mesh generation, flow pattern

and shear stress distribution), or a combination of Matlab and FLUENT (Moore

et al. 1998). In this thesis the geometry was created using GAMBIT and was

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imported into FLUENT for flow simulations. Details are presented in the results

chapter of this thesis.

As previously mentioned, computer simulations need to be carried out for

individual patients to both predict their flow pattern and aid understanding of

the relationships between vessel geometry and angles of bifurcation, velocity

profiles and wall shear stress in general (Xu et al. 1999). More studies are

needed and many research groups worldwide are currently working to provide

such information.

CFD provides the benefit of easy visualization of flow path and the possibility

to predict flow, pressure and velocity fields as a function of time and position

within the geometry (Song et al. 2000).

3.3.4. FLUENT model used in this thesis

In this thesis, a simple 3-D geometry was used, as shown below (Figs. 3.3.4 a)

and b), which has four branches with different flow rates. Table 3.3.4.1 shows

the dimensions of the geometry used in this model. At inlet (bottom) the

velocity is considered to be 0.07 m/s and operating pressure is 3922.66 Pascal

according to Tasu (2002). The velocity magnitude, pressure, and dimensions of

the geometry are an approximation from the majority of published values. This

model geometry was constructed by using GAMBIT 2.0.4 (FLUENT 6.0) and

the simulations were carried out using a super computer at VPAC (Victorian

Partnership of Advanced Computing), which takes up to 60 minutes to converge

using FLUENT 6.0. The flow properties of blood used in this study are given in

Table 3.3.4.2 (Oka 1980). The convergence criterion of reduction of residuals

by five orders of magnitude for continuity and three orders of magnitude for

other transport equations was used.

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(a) (b) Figure 3.3.4. Grid for (a) normal model; (b) blocked model (Petkova et al.

2003)

Dimensions mm

Inlet diameter 10

First branching diameter 8.5

Outlet diameter 6.375

Total hight of the vessel 91

Table 3.3.4.1. Dimensions of the geometry used in this model (Petkova et al.

2003)

Power law index (n) 0.4851

Consistency index k (kg-s^n-2/m) 0.2073

Reference temperature (0K) 310

Minimum viscosity limit ηmax (kg/m-s) 0.00125

Maximum viscosity limit ηmin (kg/m-s) 0.003

Table 3.3.4.2. Non-Newtonian power law parameters used in this study

(Petkova et al. 2003)

3.4. Blood flow properties

3.4.1. Rheological properties of human blood

Under low shear stress the blood experiences shear thinning and aggregation of

red blood cells, while in high shear the deformation and separation of red blood

cells is present. The flow properties of blood are also dependent on the cell

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concentration, coagulation, adhesion and oxygen concentration. In this respect,

Kang (2002) based his study on the view that blood is a suspension of red blood

cells.

There are many theories dealing with the changing behaviour of blood. In this

thesis those changes have not been taken into account, but these are to be

considered for future research. Some of these are Batchelor’s theory (helping

predict the effective viscosity of blood), Hinch and Leal’s theory (continuation

from previous theory dealing with spherical particles) and Keller and Skalak’s

theory (the axisymmetric flow and tank treading motion with or without

flipping of the red blood cells).

Human red blood cells have a sphericity index about 44% larger than the

minimum area required for the spherical shape (Galbraith et al. 1998). The

sphericity index is represented by:

S= (A/4π)1/2/ (3V/4π)1/3 (3.4.1.)

where A is the total surface and V is the volume of the cells, and for spheroidal

particles S=a/b=r , where a is the elongated diameter and b is the smaller

diameter of the red blood cell

S= 1.2 and

r= 0.25 for oblate spheroid and r= 6 for an prolate spheroid (Galbraith et al.

1998).

In uniaxial straining flow, each blood cell is deformed into a prolate shape,

while in biaxial straining flow, the cells have oblate shape. In axisymmetric

straining flow the membrane tension is assumed to be isotropic and the shape of

the cells is independent of the strain rate if the bending resistance of the cells

are neglected (In Seok Kang 2002). The importance of the deformation

characteristics of blood cells on the flow has been demonstrated in many studies

in the last over three decades (Nakamura and Sawada 1988; Pozrikidis 1990;

Richardson 1974) and will be the focus for future research.

The tables below (3.4.1.1. and 3.4.1.2.) show some of the difficulties

researchers face when trying to model blood flow, namely the discrepancies of

the blood parameters. They might be due to the conditions of the blood donor,

his/her diet, the equipment used, or even the skills of the laboratory technician.

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Regardless of the reasons, the differences are quite significant, induce

discrepancies in modelling, and need to be specified by the researcher in detail

(i.e. it can not be sufficient to state that the blood used in the model is human

whole blood, but rather the cell count, cell size, density and viscosity for that

specific sample need to be specified).

Reference Leukocytes Erythrocytes Platelets Plasma

Diameter/

number per

mm3

Diameter/ number

per mm3

Diameter/

number per

mm3

% of

total

blood

(Arey 1957) 5000-

9000

8.5μm 5.5 million1

5 million2

2-3μ 200-

350,000

55

(Miller and

Leavell 1972)

7-

20μ

5000-

9000

7.7μm 5.5-7

million1 4.5-

6 million2

2-4μ 400,000 ~50

(Petrov 1994) 6000 4.5-5 million 3-

500,000

(Strackee and

Westerhof 1993)

6-15μ 8μm 3μ

(Jensen 1996) 9-25μ 8000 7μm 5 million 2-4μ 250-

500,000

(Smith and

Kampine 1984)

5000-

7000

8 μm 4.5-5.5

million

2-3μ 150-

300,000

55

(Jalan et al.

2004)

7-

22μ

4000-

11000

8 μm 4-6 million 2-4μ 250-

500,000

~55

(Encyclopaedia

Britannica 2005)

4500-

11000

7.8μm 5.2 million 150-

400,000

Table 3.4.1.1. Composition of human blood; 1 Man, 2 Woman

The viscosity of blood varies with the hematocrit, which is the percentage of the

total blood volume occupied by blood cells.

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Reference Density Viscosity at 37oC Kinematic viscosity

(Pedley 1980) 1.05x103 kgm-3 0.004 kgm-1s-1 4x10-6 m2s-1

(Strackee and

Westerhof 1993)

1.05x103 kgm-3 3-4mNsm-2

(Jensen 1996) 1.06x103kg/m3 0.004 kgm-1s-1

(Jalan et al. 2004) 103kg/m3 3-4mNsm-2

Table 3.4.1.2. Blood properties according to the literature

The relationship between hematocrit and viscosity is non linear. At hematocrit

of 40% the relative viscosity is 4, and at hematocrit of 60% is 8 (Klabunde

2003). An increase of 10 in hematocrit above the level of 40 results in around

25% increase in relative viscosity, and an increase of 20 (hence hematocrit

reaching 60) would result in around 60% viscosity increase (Smith and

Kampine 1984). Another factor that has a major impact on the viscosity is

temperature – for every 1oC decrease in temperature the viscosity increases by

approximately 2% (Klabunde 2003; Smith and Kampine 1984). In very low

flow, the cell-to-cell and protein-to-cell adhesion increases and thus the blood

viscosity increases too.

Below (Table 3.4.1.3.) are some examples of the blood flow parameters in the

portal vein, and it can be noted that they are varying largely between different

studies, thus again highlighting the importance of quoting the patient specific

conditions and the measurement methods used when presenting the results.

Those three examples (Tables 3.4.1.1. to 3.4.1.3.) highlight the benefit of

individualising the model to fit each patient’s individual conditions, in terms of

accuracy and realistic representation.

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Reference Portal

vein

pressure

PV

pressure

after

procedur

e

Pressure

gradient

Pressure

gradient

after

procedure

Portal

vein flow

velocity

Total PV

blood flow

(Oikawa

et al.

1998)

26-42

(mean

36.44)

cmH2O

- - - - -

(Ochs et

al. 1995)

40 ± 10

cmH2O

28 ± 7

cmH2O

30 ± 10

cmH2O

11 ± 6

cmH2O

- -

(Rőssle et

al. 1994)

- - 21.5 ± 5

mmHg

9.2 ± 4.1

mmHg

cm/sec

7.7 ± 4.8

before

shunting

19.7 ± 5.2

after

shunting

ml/min

800 ± 500

before

shunting

1900 ± 800

after

shunting

(Okazaki

et al.

1986)

- - - - 10.2 ± 3.5

cm/sec

579 ± 262

ml/min

(Zardi et

al. 2003)

- - - - 23.9cm/se

c

[29cm/sec

after

iloprost

treatment]

1824.6ml/m

in

[2294.4ml/

min after

iloprost

treatment]

Table 3.4.1.3. Portal vein flow

In healthy people the portal vein pressure is around 10-14cmH2O (8-10mmHg),

which increases in portal hypertension to 25-35cmH2O (20-25mmHg) (Smith

and Kampine 1984).

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The perfusion pressure, vascular resistance and blood viscosity determine organ

blood flow. In the case of a rigid tube the changes in apparent viscosity would

lead to parallel changes in resistance and a reciprocal change in flow (Chen et

al. 1989). In vivo changes in viscosity and flow may be compensated by

autoregulatory change in vascular geometry (Dalinghaus et al. 1994). While this

study has not aimed to measure blood properties, it is the intentions of future

research to have those measured and the model adjusted for the specific

conditions. Blood viscoelasticity, for example, is mainly represented by the

behaviour of red blood cells, thus further studies are needed taking this effect in

consideration.

Studies have shown that blood viscosity and elasticity change during and after

coronary artery bypass grafting (Undar and Vaughn 2002). This is an area

where research is starting to become more intense and the results of those

scientific efforts would greatly benefit the model proposed in this thesis.

One of the new methods for blood plasma viscosity measurements is fluorescent

molecular rotors (Haidekker et al. 2002). While this method is accurate, it

cannot be used for whole blood measurements. For these measurements, a novel

method is the use of a capillary viscometer with a mass-detecting sensor (Shin

and Keum 2002) over a range of shear rates without using anticoagulants

(measurements need to be completed within three minutes). The major

advantage of this method is the accuracy that is provided by using unaltered

whole blood.

The viscosity of plasma is 1.2mPa at 37oC and its behaviour is Newtonian

(Fung 1993; Jalan et al. 2004; Levick 1995; Petrov 1994; Strackee and

Westerhof 1993).

The number of blood cells determines the viscous behaviour of the blood.

Normally, there are 4.5-5 x 106 erythrocytes, 6 x 103 leukocytes, and 3-5 x 105

platelets per mm3 of blood (Petrov 1994), although there is some discrepancy in

these in the literature. For example, in Y.C. Fung’s book Biomechanics (1993)

the number of cells is given as 5-8 x 103 per mm3 for leukocytes and 2.5-3 x 105

per mm3 for platelets.

The size of the different blood cells under normal, non-deformed conditions is

approximately the following (Strackee and Westerhof 1993):

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Erythrocytes are about 8μm length and 2μm and 1μm thickness at the thickest

and thinnest points respectively; leukocytes are about 6-7.5μm in diameter

(when flattened, the diameter increases to about 15μm); and platelets are

approximately 3μm long and 0.6-1μm thick.

The model developed in this thesis is applicable to different cell volume and can

be adjusted to both Newtonian and non-Newtonian flow.

The specific gravity of blood plasma is 1.03 (Levick 1995; Miller and Leavell

1972), compared to 1.10 for erythrocytes. The specific gravity of whole blood is

between 1.041 and 1.067 and is taken as an average of 1.058 (Miller and

Leavell 1972).

The relative viscosity of blood is dependent on the hematocrit and for human

blood would be approximately 4 for hematocrit of 47% (Levick 1995).

3.4.1.1. Properties of blood in patients with chronic liver disease

In patients with chronic liver diseases alterations in the blood level of proteins,

lipids and fibrinogen, and changes in blood viscosity lead to structural and

metabolic abnormalities in the membrane of the erythrocytes (Sule et al. 2002;

Takashinizu et al. 2000). Sule Tamer et al. (2002) have shown a decrease in

plasma and blood viscosity, and a significant reduction in hematocrit in patients

with chronic liver disease (29.83±5.9%) compared to healthy subjects

(45.61±2.15%). Suggestions that erythrocytes become more rigid and have

decreased deformation ability in non-alcoholic liver disease show gaps in the

current knowledge of blood properties. Advances in this area can benefit the

model proposed in this thesis by altering the fluid parameters to represent blood

properties in diseased patients. The hematocrit of the blood, which determines

the blood viscosity, varies with changes of temperature and with the stage of the

disease.

3.4.1.2. Non-Newtonian properties of blood

It is well known from viscometry that blood plasma behaves like a Newtonian

fluid. The composition of the blood plasma is approximately 90% water and

10% of a combination of proteins (predominantly), organic and non-organic

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substances. This is not the case with whole blood, revealing the role blood

elements play in the properties of the flow.

Another very important factor in describing the behaviour of whole blood is the

shear rate. Data suggest that for low shear rates of less than 10s-1 and hematocrit

less than 40%, the Casson’s equation can be used (Fung 1993; Strackee and

Westerhof 1993):

γηττ &+= y (3.4.1.2.1.)

where τ is shear stress, γ& is the shear strain rate, η is a constant, and τy is yield

stress in shear constant. At high shear rate the viscosity μ can be considered constant and the behaviour

of blood Newtonian:

γμτ &= (3.4.1.2.2.)

Investigations and analysis of flow through stenosis or at the point of branching

of an artery or vein (point of bifurcation) cannot usually be carried via the

previous equations as the stress and strain rate distributions are unknown (Fung

1993)..

Blood flow through the portal vein occurs at low Reynolds numbers, and the

Navier-Stokes equations can be used for its mathematical modelling (Yousef et

al. 2001).

Reynolds numbers (Re) are calculated using the following formula:

μρLU

=Re (3.4.1.2.3.),

where U is the mean velocity at the inlet, L is the diameter, μ is the viscosity

and ρ is the density (Strackee and Westerhof 1993).

Reynolds number indicates whether a flow is laminar or turbulent (Re above

2500 usually indicates turbulent flow in a long, smooth tube) (Jensen 1996).

Reynolds numbers are equal to the inertial forces divided by the viscous forces

(Jalan et al. 2004).

3.4.1.3. Blood viscosity

As mentioned earlier blood viscosity in most cases is not a constant. Here, some

of the possible reasons for this, in addition to the ones featured above, are

discussed.

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Red blood cells in humans have the ability to form aggregates, called rouleaux

(Jalan et al. 2004). These are chain-like structures, which can branch and take

any form. The individual cells are attached to each other via their larger faces.

The smaller the shear rate, the greater or larger aggregates that are formed

(Fung 1993; Levick 1995; Petrov 1994; Strackee and Westerhof 1993). Large

rouleaux cause a greater disturbance in flow than that which occurs from the

individual cells. The ability of erythrocytes to deform and elongate also plays a

role in determining viscosity – increasing the shear rate leads to reduction in

viscosity. Although shear rate plays an important role in the deformation of the

red blood cells it is not the only factor for this phenomenon.

Tubular flow of blood shows a zone “free” of cells next to the wall. The width

of this wall “plasma-only zone” increases with the increase in the shear rate

(Fung 1993; Strackee and Westerhof 1993). Platelets, on the contrary, tend to

move towards the wall of the vessel. When measuring blood viscosity it is

important to recognise the existence of this zone and to take it into account

when representing the data. Thus, the term apparent viscosity is usually used to

describe the blood viscosity. The apparent viscosity and the hematocrit are

lower in smaller vessels and where branching from larger vessels into smaller

vessels occurs (Fung 1993).

Viscosity can be defined as the ratio of shear stress to shear rate. Shear stress

(N/m2) is the shearing between the layers of laminal flow and depends on the

axial pressure gradient. Shear rate [(m/s)/m or s-1] is the change in velocity per

unit radial distance (Levick 1995, Chapter 8).

3.4.1.4. Blood cell behaviour as suspended particles in the blood flow

Blood cells, flowing in an axial direction, would tumble, thus disturbing the

flow pattern. Rouleaux of cells would have a greater impact on the flow

behaviour than the disturbance of a single cell (Fung 1993). This also means

that at any given time at any point in the cross sectional area of the blood vessel

there will be different flow disturbances based on the path of the blood cells and

rouleaux. If the rouleaux are broken into individual cells, due to increase in the

shear rate, the viscosity of the fluid will decrease (Fung 1993). This is one of

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the explanations of why the profile of whole blood flow is not parabolic as in

Poiseuille flow. Researchers (Gauthier et al. 1972; Goldsmith 1971) have

described the erratic sidewise movement of the blood cells due to random and

frequent encounters with other cells (Fung 1993, Chapter 3).

3.4.2. Newtonian flow

The Navier-Stokes equation (Smart Measurement 2004) can be described as

follows:

where p is pressure, v is velocity, μ is viscosity, ρ is density and b is body force

(Smart Measurement 2004).

An incompressible fluid is one whose density is constant throughout.

The Navier-Stokes equation, in combination with the equation of continuity,

describes completely incompressible Newtonian flow with constant viscosity

(Dinnar 1981; Jensen 1996). Whole blood behaves as a Newtonian fluid at high

shear rate (Fung 1993; Jensen 1996). In the portal vein, shear rates are lower,

and the flow has to be seen as non-Newtonian.

By definition, the Newtonian flow can be described as

drduμτ −= (3.4.2.),

Where τ is the shear stress, μ is coefficient of viscosity, and drdu is the velocity

gradient perpendicular to the direction of shear [s−1].

3.4.3. Factors governing portal vein hemodynamics

Patients with advanced chronic liver diseases often have abnormal

hemodynamic parameters showing hyperdynamic circulation in the splanchnic

and systemic vessels (Koda et al. 2000). There are many factors determining the

local hemodynamics of the blood flow through the liver. These include the size

of the shunt, its diameter and position, the type of bifurcation and the curvature

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of the vein and shunt, and the size and position of blockages within the portal

vein or liver.

In portal hypertension, the portal vein diameter enlarges (>13mm) and the

platelet count is low (<140,000 per mm3) (Grace et al. 1996).

3.4.4. Specific factors impacting on branched vessels

Branching of blood vessels is frequent in the human circulatory system. These

changes in the vessel diameter, and consequently the velocity of the flow are

difficult to model and predict. Commonly used assumptions (as outlined further

in this chapter) are that the walls are rigid, the branches have equal dimensions

and the flow is steady and incompressible.

Figure 3.4.4. Rigid, simple model of equal dimension branching of a vessel

(Jensen 1996)

When the total cross sectional area of all vessels (post-branching) becomes

larger, the velocity decreases and the velocity profile changes (Jensen 1996).

The pressure difference needs to overcome the viscous resistance. If all

branches have the same dimensions, the radius of each branch Rn must be equal

to the initial vessel radius R0 divided by 4 n , where n is the number of branches

(Jensen 1996) if resistance is to remain constant. As such, it would be very

difficult to estimate the radius if the branches have different dimensions. Other

factors, such as the maintenance of constant shear stress may play part in

keeping the resistance constant.

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Experimental studies have shown that continuous loads of hemodynamic

stresses influence the tissue architecture of a branched vessel (Kobashi and

Takehisa 2000). Under in vitro continuous flow conditions, cultured arterial

tissue from bovine smooth muscle cells, for example showed endothelial cell

alignment in the direction of the flow in the branched region after 24 hours,

with the exception of the region of predicted flow separation where they

retained polygonal form (Kobashi and Takehisa 2000).

Flow disturbance is usually seen at bifurcations, branches or stenotic areas in

blood vessels, which are also the regions responsible for damage to blood cells

and vessel wall and where platelet thrombi are usually observed (Mori 1989,

Chapter 19).

It was mentioned above that erythrocytes tend to concentrate along the axis of

the blood flow while platelets tend to move closer to the wall. This might be an

explanation for the frequent findings of platelet thrombi downstream of

bifurcations and stenosis. Another explanation is given by the convection-

diffusion theory, which looks at thrombus formation as a result of endothelial

layer damage, and the adhesion of platelets to the subendothelium (Strackee &

Westerhof 1993, Chapter 16).

Most studies involving branched vessels are related to the arterial tree, but

might be used in studies on the venous system. In studying the uniform shear

stress hypothesis for a mean value of the branching exponent = 3 (where the

parent diameter equals the sum of the two daughter diameters), Karau et al

(Karau et al. 2001) demonstrated that there was little correlation between the

above, for a heterogeneous distribution of the exponent values in the vascular

tree.

At the point of branching the flow profile will not be parabolic, and can be

assumed to be blunt in the beginning, and gradually reaching a parabolic profile

with increasing distance travelled (Jensen 1996).

The simplified portal vein models used in the experimental and computer

simulations in this thesis have two main branches, which each branch into two

sub-branches, as described above in section 3.4 of this chapter.

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3.4.5. Hemodynamics of vascular grafts

It is necessary to investigate the hemodynamics that affects the performance,

durability and effectiveness of vascular grafts. Different graft models need to be

compared to find ways to improve them so they can be as close to their natural

values as possible. Wall shear stress, for example is deemed to be responsible

for development of intimal hyperplasia, which ultimately leads to stenosis and

thrombosis (Bonert et al. 2003). When a graft is implanted in the human body,

the native vessels which are affected experience change in their hemodynamics

due to, for example, increased blood flow and perfusion pressure. The angle at

which the graft joins the vessel is also very important, as the wall shear stress

changes in the native vessel in the region of impact with the graft flow. The

vessel wall can relax and thus increase the vessel diameter. Some studies have

even shown that such changes can lead to structural changes in the endothelial

cells (Levesque et al. 1986; Reidy and Schwartz 1981) and their orientation.

Many studies over the past three decades have shown the importance of the

elasticity and compliance of vascular grafts being as close to those of the native

vessel as possible. The compliance hypothesis is described as “the patency of a

vascular prosthesis will be optimal if its mechanical properties match those of

the anastomosed natural vessel” (Mori 1989, Chapter 21). Thus, mimicking the

properties of the vessel where the graft will be implanted is a pre-requisite for

the success of the grafting. But even if this was so at the time of first

implantation, changes to hemodynamics over time may affect the structure and

behaviour of the graft.

3.4.6. Impact of portal hypertension on vascular hemodynamics

Shunting after portal hypertension has an effect on the whole blood circulation.

For example, after portocaval end-to-side shunt, an increase of 27±19% in the

cardiac output and a decrease in the peripheral vascular resistance of -23±18%

can be observed, while those parameters are 18±28% and -11±27%,

respectively, after distal splenorenal shunts (Luca et al. 1999). The fact that

peripheral vasodilatation deteriorates after shunt procedures suggest that portal

systemic shunting is more important than increased portal pressure in

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determining peripheral and pulmonary vasodilatation in patients with cirrhosis

(Luca et al. 1999). Both shunts also decrease hepatic blood flow.

In a study to evaluate portal hypertension and cirrhosis using hepatic venous

pressure gradients measured by duplex ultrasound method in 72 patients (Tasu

et al. 2002), the following comparison between the patients and a control group

was made in terms of portal vein parameters:

Group / parameter Control Child-Pugh classified (A, B, C)

Portal vein velocity

(cm/s)

20.5 ± 4.71 Between 9.02 and 15.42

Portal vein diameter

(cm)

1.1 ± 0.26 1.22±0.31 and 1.35±0.35

Portal flow rate (cm/s) 21.68 ± 7.68 Between 14.6 and 21.38 max

variation ± 16.6

Table 3.4.6.1. Comparison between control and Child-Pugh classified

patients (Tasu et al. 2002)

Child-Pugh classification is used to determine the severity of the liver disease

based on scores given according to the degree of ascites, the plasma

concentrations of bilirubin and albumin, the prothrombin time, and the degree

of encephalopathy, and are grouped in three classes:

Points Class Life expectancy Perioperative mortality

5-6 A 15-20 10%

7-9 B Candidate for transplant 30%

10-15 C 1-3 months 82%

The measured values of vessel diameter and velocity are also dependent on

administration of medications by the studied subjects (Gibson et al. 1996), and

Table 3.4.6.2 below represents the baseline values only (before administrating

ketanserin) which differ from the post administrative ones. This table shows the

usefulness of Doppler flowmetry and the type of data obtainable with this

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method. These values can be used in the creating of the computer model

described in this thesis.

Vessel / Parameter Vessel diameter (cm) Peak velocity (cm/s)

Hepatic artery 0.43 43.2

Main portal vein 1.33 19.6

Right portal vein 0.95 14.7

Para-umbilical vein 0.51 18.9

Table 3.4.6.2. Duplex Doppler Ultrasound measurements of vessel diameter

and average velocity in 14 patients with alcoholic cirrhosis and portal

hypertension (Gibson et al. 1996)

To illustrate the diversity of data obtained from different research groups, the

following table shows the same parameters measured by Duplex

Ultrasonography in control and portal hypertensive patients (Ozaki et al. 1988).

In this study there are no differences in the vessel diameter in the two groups,

yet the average velocity is nearly three times, and the blood volume more than

60% lower, in portal hypertensive patients.

Group / parameter Control Portal hypertension

Portal vein velocity (cm/s) 18.99 ± 0.86 6.21 ± 1.6

Portal vein diameter (cm) 0.95 ± 0.033 1.008 ± 0.049

Portal flow volume

(ml/min)

874 ± 44 450 ± 86

Table 3.4.6.3. Duplex Ultrasonographic measurements in 22 control and 29

PH patients (Ozaki et al. 1988)

Maximal blood flow through the portal vein in cirrhotic patients did not exceed

15.5cm/sec, whereas the minimal flow velocity in the control group was

15cm/sec. The congestion index in cirrhosis is shown to be greater than 18%

(Maisaia et al. 2001).

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Group/Parameter Control Cirrhotic portal hypertension

Portal vein diameter Average 0.95cm Average 1.278cm

Maximal flow velocity 13.87cm/sec 21.79cm/sec

Mean velocity 11.13cm/sec 17.96cm/sec

Minimal flow velocity 9.53cm/sec 15.01cm/sec

Congestion index 6.547% 47.616%

Table 3.4.6.4. Comparison between control and cirrhotic patients (Maisaia

et al. 2001) using Doppler Ultrasonography data

Comparison between the vessel diameter and peak velocity (Table 3.4.6.2) in

hepatic blood vessels shows the usefulness of measuring more than one vessel

to determine and grade portal hypertension (Gibson et al. 1996).

Contrary to the above, Duplex sonography is shown to diagnose portal

hypertension but is unable to assist in its grading. Haag et al. (1999) made the

following observation in 375 patients with portal hypertension and a control

group of 100 patients, where either velocity under 21cm/sec or a portal vein

diameter larger than 1.25cm was indicated the presence of portal hypertension.

Portal vein diameter Portal vein flow velocity

Portal hypertension

compared to healthy

individuals

+ 30% - 44%

Table 3.4.6.5. Difference between healthy individuals and patients with

portal hypertension (Haag et al. 1999)

Although scarce in the literature, follow-up studies of patients with cirrhosis can

be very useful to determine the outcome of treatment and to investigate possible

alternative methods to improve hepatic hemodynamics. In 2002 Bolognesi et al.

(2002) reported on 4 years of follow-up in 41 patients with cirrhosis and 35

controls. In cirrhotic patients, portal blood velocity increased post-

transplantation from 9.1±3.7cm/sec to 38.3±14.6cm/sec, and the blood flow

volumes increased from 808±479 mL/min to 2817±1153mL/min (Bolognesi et

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al. 2002). Pulsatility index increase corresponded with the increase of portal

blood flow and velocity from 1.36±0.32 to 2.34±1.29.

3.5. Theoretical reasoning for the proposed model During the past 80 years, modelling of different parts of the cardiovascular

system has played a significant role in our understanding of its function in

health and disease. Most models have been developed to deal with the workings

of the heart or parts of the heart (valves, ventricles and carotic artery), or to

describe the aorta. Some studies have investigated and modelled the whole

cardiovascular system (Žáček and Krause 1996) using a system of pipes and

reservoirs with good agreement to experimental measurements. All of those

models have some degree of simplification, and the one in this thesis is no

different.

In many of the models, blood is assumed to be Newtonian in large vessels and

sometimes considered non-Newtonian only in the capillary system (Žáček and

Krause 1996), but still making provisions in the mathematics to account for the

non-Newtonian flow in small vessels (introducing drag coefficient for each

component of the system, for example).

The model of the shunt and the portal vein presented here uses both Newtonian

and non-Newtonian behaviour for comparison and to enable the use of either of

them in future modelling of components of the vascular system.

3.5.1. Laminar flow of blood

Even when the flow is laminar, the profile of blood flow in a cylindrical tube is

more blunted than parabolic (Levick 1995). At high shear rates red blood cells

tend to orient parallel to the direction of the flow due to the shearing of lamina

against lamina. As the cells are displaced closer to the centre of the tube, a small

layer next to the wall becomes nearly “free” of cells, thus playing role in the

blood viscosity measurements (mentioned in the previous chapter). Shear rate

could be defined as the change in blood velocity per unit distance across the

tube. In this thesis turbulent flow has not been modelled as it occurs when the

Reynolds number is very high (somewhere around 2000), as this is not the case

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in the portal vein. The Reynolds numbers in the model have not exceeded 600

in any part of the vessel.

If the flow is laminar, the resistance is due to internal friction of the lamina

layers and not friction between the blood and vessel wall (based on the zero-slip

condition). Shear rates depend on the diameter of the vessel, and increase with

the decrease of diameter provided the flow rate is the same.

In case of laminar Newtonian flow through a tube, Poiseuille’s law can be

applied:

lQ

ηπα8

4

ΔΡ=& (3.5.1.)

Where Q is the total flow per unit time; & ΔΡ is the pressure difference (pressure

drop) between the two ends of the tube; η is the viscosity coefficient, α and l

are radius and length.

With increase in viscosity there is an increase in the pressure gradient to

maintain the given flow rate (Jalan 2004). To maintain laminar flow after

shunting, the ratio between the native vessel and the graft also plays an

important role. Szilagy et al. (1960) and Kinley et al. (1974) have modelled

empirically and mathematically, respectively, the optimal graft to native vessel

diameter ratio for end-to-end anastomoses to be 1.5.

Sometimes there are disturbances in the flow due to wall-fluid interaction,

branching or stenosis, but this does not mean there is turbulence. In most cases

it is a temporary condition and depends on the oscillatory cycle (Dinnar and

Raton 1981).

3.5.2. Fluid mechanics definitions

A number of terms relevant to subsequent sections are defined below:

Viscosity is the resistance to flow due to friction of molecules in a moving

liquid, and is dependent on the concentration of suspended cells, the radius of

the vessel and velocity of the flow (Smith, J J & Kampine, J P 1984). It is

constant in homogeneous fluids, but changes for non-homogeneous liquids like

blood.

Stress can be defined as force per unit of perpendicular area, thus being

associated with a direction and a plane, hence, a tensor (Dinnar and Raton1981).

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Strain is a non-dimensional ratio between deformation of a parameter and its

pre-load value.

The relationship between stress and strain will be linear for perfectly elastic

material under low acting forces (Hooke’s law). Hooke’s law for a linear elastic

material means that the material would deform proportionally to the force

applied and with the cessation of its application will return to its original

dimensions (Strackee and Westerhof 1993, Chapter 13). In a fluid such as

blood, on the other hand, the magnitude of the applied force will determine the

movement of the particles, hence viscosity. Blood vessels have some of both

relationships and are considered viscoelastic (Dinnar 1981; Strackee and

Westerhof 1993). Blood vessels, such as veins, which deform axisymmetrically

because they have thin walls, do not obey Hooke’s law (Dinnar and Raton 1981,

Chapter 8).

When tensile stress is applied to a material, the resulting strain is determined by

Young's modulus constant (force/length2) defined as the ratio of the stress to the

corresponding strain. It is a way to measure the stiffness of a material, and may

be used as a measure of the stiffness of the vessel wall material (Greenwald

2002).

When the two tensors, stress and strain, act in the same direction (the ratio

between them is in that direction) the material is called isotropic (Dinnar and

Raton1981). The material has equal properties in all directions.

A homogenous material is one which has the same structure and properties at

all points, and is also isotropic.

Blood vessels are neither homogeneous, nor isotropic (Jalan et al. 2004;

Strackee and Westerhof 1993, Chapter 13).

Shear rate at any point of the vessel wall is the normal derivative of the fluid

velocity of the blood. Shear stress is the product of shear rate and kinematic

viscosity of blood at that shear rate (Mori 1989). Both parameters vary in the

vascular system with time.

Streamline is an empirically drawn imaginary curve in space at a given time

which is parallel to the direction of the motion of the fluid at that point, and

does not change with time in steady flows (Jalan et al. 2004).

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The flow remote from the entrance of the vessel is called Fully Developed

(assuming the entrance is far away and does not have an impact on the flow, i.e.

the flow has reached its profile and will not change further if the vessel

diameter is constant) (Moore et al. 1998), and is characterised by a linear fall in

pressure with distance and a linear increase in pressure gradient with flow-rate

(Jalan et al. 2004).

3.5.3. Basic laws governing the cardiovascular system

If we simplify the human circulation system, from Newton’s law for the

conservation of mass, the relationship between the changes in venous versus the

change in arterial blood volume is adverse. If that is so, any decrease in the

venous volume will lead to a decrease in venous pressure determined by the

magnitude of venous compliance (Strackee and Westerhof 1993). As veins

carry around 75% of the blood in the body their high sensitivity to mechanical

stimuli (due to the smooth muscle cells in their walls) and high compliance (low

elastic modulus), as well as their lower Young’s modulus compared to arteries

has to be taken into account when modelling blood flow (Fung 1993). Young’s

modulus (modulus of elasticity) is the ratio of stress and strain, and is a straight

line only for purely elastic materials (Strackee and Westerhof 1993). Venous

pressure is determined as the pressure which blood exerts within the vein and is

usually between 60 and 120mmH2O in a lying position (Miller and Leavell

1972). The pressure in the portal vein model in this thesis is 40mmH2O, which

is the average in portal hypertension.

3.5.4. Commonly used assumptions

Homogeneity. The assumption used for simplifying the mathematical model of

blood flow is that blood is homogenous. This however cannot be a valid

assumption when considering blood cells and particle deposition on the blood

vessel wall (Dinnar and Raton 1981; Finol and Amon 2002; Fung 1993; Song et

al. 2000; Strackee and Westerhof 1993).

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Axisymmetric flow. Most models of blood assume the existence of

axisymmetric flow. For example, such flow was used to model stenotic arterial

flow in a vascular tube (Gurlek et al. 2002; Marques et al. 2003) or to model

pulsatile flow (Marques et al. 2003).

Example:

Let us assume that the vessel is perfectly elastic and the flow is incompressible

(Poisson’s ration =0.5, as for rubber). εσ E=

Poisson’s ratio is the ratio of transverse contraction strain to longitudinal

extension strain in the direction of stretching force, and is positive for all

common materials as they become narrower in cross section when they are

stretched.

If we want to solve the elasticity equation for a tube wall motion under varying

internal pressure (i.e. pulse), and the wall radius expands from a to a + η(x,t),

then the strain is: aa

aa ηπ

πηπε =−+

=2

2)(2

The forces relationship tension = pressure + inertia must be observed.

The circumferential tension T divided by the tube thickness φ can give the

value of stress per unit length: ( )a

txET ,ηφ=

Endothelialization after fibrin deposition on the vessel wall can be viewed as

incorporation of the deposition into the vessel wall. Thus, when modelling the

region of stenosis, it can be considered as a region of different wall thickness,

elasticity and radius (Dinnar and Raton 1981).

Steady flow. This is a flow in which the velocity at any one point of the flow

never changes (and the viscosity is neglected) (Jensen 1996): 0=∂∂

Incompressible flow. This is a flow which neither enters nor exits the vessel

(Song et al. 2000) and is used in CFD modelling of arteries (Moore et al. 1998;

(Morsi et al. 2001). If an incompressible fluid flows through an infinitely long

vessel, the cross sectional area at one point multiplied by the velocity at that

point will equal the cross sectional area at another, different point multiplied by

the velocity at that point.

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3.5.5. Additional effects impacting the circulation

Shear Stress: The vessel wall shear stress is one of the factors considered

important for vessel growth. In a theoretical study, Hacking et al. (Hacking et

al. 1996) evaluated the effect of shear stress on vascular diameter, and

concluded that there must be other factors leading to steady network structures,

as shear stress alone does not cause such stability. The calculations carried out

showed a development of an optimal constant diameter when the vessel or

vessel tree was perfused with constant flow or a constant pressure source with

internal resistance. This study also showed a regression diameter (increasing to

infinity) of the vessel when constant pressure perfusion was applied. The non-

homogeneous distribution of stress is responsible for non-homogeneous

remodelling of tissue due to stress changes in the organ or vessel (Fung 1993).

There are numerous theoretical and experimental studies of the effects of shear

and circumferential stress on vessel growth ranging in subjects from rats to

human, and investigating Newtonian and non-Newtonian flow conditions.

Shunting and portal vein ligation: Cirrhotic portal hypertension may alter the

relationship between portal pressure and capacity to develop shunts in rats

(Geraghty et al. 1989).

Partial ligation of the portal vein in rats leads to increased portal venous inflow,

which helped in maintaining portal hypertension (Sikuler et al. 1985). That

study, on 45 portal hypertensive rats and 29 control rats, showed increase in

portal pressure and resistance (around 80%) and decrease in portal venous

inflow (around 80%).

Shunting and fibrosis: Comparing dogs with artificially induced portal fibrosis

and healthy dogs (Sugita et al. 1987), there were no portal systemic shunts,

although the intrahepatic presinusoidal portal hypertension developed by the

treated dogs could be seen as the portal vein pressure increased by 50% in those

animals compared to controls. Increase in both the portal venous flow (around

30%) and intrahepatic portal vascular resistance (over 50%) has also been

recorded.

Clamping of the vessel: A problem when using blood flow models is the

mismatch impedance caused by the clamps on the vessel segment studied

(Charara et al. 1999).

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Reynolds number (Re): Reynolds numbers in the human circulation are

usually below 2000 (or even assumed to be 125 in arteries (Moore et al. 1998)),

but stenosis or clots on the vessel wall can increase velocity and lead to a

disturbed or even turbulent flow close to the stenosis (Jensen 1996) with

Reynolds numbers above 2500.

3.5.6. Wave propagation in the cardiovascular system

Waves generated from the heart travel in the direction of the blood flow, and

due to their reflection at sites of discontinuities, waves in the opposite direction

are observed. Bifurcations are a good example of regions responsible for wave

reflection.

In non-viscous models the governing equations for wave propagation are linear

(Fig 3.5.6).

Figure 3.5.6. Relationship between pressure, area of vessels and the speed

blood moves with through them in the circulation (Miller and Leavell 1972)

From Figure 3.5.6, it is evident that pressure is lower in the veins compared to

other parts of the circulation. In the portal vein the blood velocity is increasing,

as shown above for veins in general, with the high increase of flow and smaller

increase of vessel area. The blood would be expected to have higher velocity in

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the portal vein after it is joined by the splenic vein (which itself usually already

incorporates the flow from the inferior mesenteric vein), as the area will

increase less than the flow. In portal hypertension, this relationship is still valid,

but the values are reversed. The pressure is higher and the velocity lower, with

the area being larger or smaller depending on vessel patency.

The pressure distribution without the area and velocity are shown in the

following figure 3.5.6.1.1.

3.5.6.1. Pulsatile flow

The pumping of the heart and the action of the aortic valve generate highly

pulsatile flow. This has an impact on the analytical modelling of the

cardiovascular system, and the flow can be considered stable only in part of the

microcirculation. Laminar flow can be assumed in most parts of the circulatory

system when turbulence is not observed. The flow in the microcirculation is

closest to steady laminar flow than any other region in the human body.

Peripheral veins have a similar flow pattern, but the closer the vein is to the

heart’s right atrium, the greater the suction effect creating a pulsatile pressure

gradient. The valves of the small veins contribute to the pulsatility of the venous

flow by preventing back flow, thus creating a positive pressure gradient (Dinnar

and Raton 1981, Chapter 6).

Figure 3.5.6.1.1. Pulsation of pressure in the circulation (Dinnar and Raton

1981)

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The vessel impedance and the pressure gradient determine flow. Because the

pressure gradient depends on the initial and reflected wave and the phase

between them, it is difficult to measure or estimate its value. The wave

propagation depends on the branching and thickening of the wall of the blood

vessel. The last two factors, together with the cross-sectional area of the vessel,

have a linear relationship with the average velocity of the blood. The small

blood cell “free” zone near the vessel wall is responsible not only for the non-

parabolic profile of the flow, but also for the initiation of reversal flow (the

reversal spreads from that zone to the axial layer due to viscosity). If this is the

case, both viscous and inertial terms must be considered (Dinnar and Raton

1981).

Figure 3.5.6.1.2. Mean velocity and velocity fluctuations in the cardiovascular system (Dinnar and Raton 1981) As can be seen from figure 3.5.6.1.2. velocity fluctuations can be expected in

veins as large as the portal vein.

Blood vessel walls are commonly modelled as rigid (Bonert et al. 2003; Gurlek

et al. 2002; Marques et al. 2003; Petkova et al. 2003; Siro et al. 2002;

Starmans-Kool et al 2002; Xu et al. 1999), but in nature their elastic properties

introduce a propagation speed for the blood pressure wave (Jensen 1996).

Researchers model compliant vessels (Hiromichi et al. 2001), but for simplicity

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in manufacturing vessels for laser Doppler anemometry (LDA) rigid walls have

been assumed in this thesis. Incompressible flow through a rigid vessel would

enable immediate propagation of a pressure wave through the tube with any

pressure change. Human blood vessels accommodate steady, gradual wave

propagation (Jensen 1996) due to their mechanical properties.

3.5.6.2. Importance of hemodynamics on modelling of blood flow

Graft patency and vascular pathophysiology are impacted by mechanical forces,

generated by the blood flow (Charara et al. 1999; Nerem 1991; Stanley et al.

1982) and the endothelial layer is most affected by those forces. A common

place for the appearance of atherosclerosis is in areas of bifurcation in arteries,

which is included in the model used in this thesis. As mentioned previously,

thrombosis and intimal hyperplasia are other complications in areas of

bifurcation (Charara et al. 1999). Flow separation is also possible if an

incompliant graft is connected. Flow separation is identical to incidence and

occurrence of negative axial velocity (Strackee and Westerhof 1993).

Limitations to organ culture models designed to examine the vascular

remodelling are the absence of the effect of blood forming elements and

pulsatile flow on the hemodynamics (Del Rizzo et al. 2001), even though such

models are useful for analysis of early vascular occlusive disease.

3.5.7. Tissue culturing studies

Tissue culturing experiments were conducted in order to establish what

improvements are required to the device in which scaffolds would be seeded to

produce novel vessels. These experiments aided in understanding of the process

of growing in vitro blood vessels on biodegradable polymers and were

undertaken simultaneously with the computer modelling of the portal vein flow.

3.5.7.1. Tissue culture methods

Tissue culture consumables (Life Technologies Pty Limited, Mulgrave,

Victoria, Australia) used in these experiments included 5mL, 10mL and 25mL

pipettes, 50mL centrifuge tubes, 100mm petri dishes, 25cm2 and 75cm2 vented

flasks, DMEM (Dulbecco’s Modified Eagle’s Medium) high glucose, Foetal

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Bovine Serum, Trypsin-EDTA (ethylenediaminetetraacetic acid), and

Penicillin/Streptomycin Solution.

Phosphate-buffered saline (PBS) was prepared as follows: 8g NaCl, 0.2g KCl,

1.44g Na2HPO4 and 0.24g KH2PO4 were dissolved into 800mL distilled water.

The pH of the solution was adjusted to 7.4 with HCl, following which water

was added to 1L. The PBS solution was sterilized by autoclaving at 121°C and

then stored at room temperature.

For long-term storage, cells were frozen using the following methodology: cell

monolayers in flasks were washed with PBS, trypsin-EDTA was added and the

flask incubating for approximately 5-10 minutes at 37°C. Growth medium was

added and the cells collected by centrifugation (1500rpm at 4°C for 5 minutes).

The cells were cooled sequentially at -20°C and -80°C, and finally placed in

liquid nitrogen.

As sterility of equipment and solutions was required at all times, the novel

design of the Bioreactor necessitated its manufacture solely from materials

suitable for autoclaving (glass and medical grade stainless steel) which could be

easily and completely disassembled.

3.5.7.2. Preparation and test studies

Dulbecco’s Growth Media (Dulbecco’s phosphate-buffered saline (PBS)

solution) was supplemented with 1% (v/v) Penicillin/Streptomycin Solution and

10% (v/v) Foetal Bovine Serum (Life Technologies Pty Limited, Mulgrave,

Victoria, Australia). As a sterility control, 20 mL of the media was placed into

75mL flasks and incubated for 48 hours at 37°C in a humidified atmosphere

with 5% CO2. After exchanging the media and a further incubation for 72 hours,

samples of the media and placed onto nutrient agar plates and examined after 24

hour for growth of bacteria and fungi.

The next step involved the addition of polymer squares (1x1 cm) to the flasks

with fresh media. If no contamination was observed after 72 hours of

incubation, the above procedures were repeated using 3T3 rat fibroblast cells.

This cell line was chosen as it was easy to maintain and to passage, and allowed

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for optimisation of the protocols and methods. The cells were grown until they

reached confluence (usually after 3-4 days) and passaged.

Experimental work was carried out with 3T3 cells and primary endothelial cells

on Vicryl and several polymers (Polycaprolactone 3D scaffolds with different

porosity, Acrylonitrile-Butadiene-Styrene).

Parallel experiments were carried out with and without polymers added to the

flasks, using cells from the same passage incubated for the same length of time

and under the same conditions.

From the experimental work, it was observed that when growing cells on

polymers (in this case, Acrylonitrile-Butadiene-Styrene at first), there is not

only a risk of stripping the tissue from the scaffold, but after passaging, the cells

which grew on the polymer showed different behaviour. Some of the cells

started growing in strips and did not spread as much as the ones which did not

have polymer in the flask. In experiments with polycarbonate, sandblasted

blocks of approximately 10mm2 were placed in the flasks, and cells attached to

the polymer within 2 minutes of incubation. Some experiments were carried out

with aortic leaflet, aortic and coronary artery, thoracic and radial artery cultures,

either via extracting the cells or culturing off-cuts of those tissues. Aorta cells

were also cultured with Vicryl coated braided (polyglactin 910) suture

(undyed), where the coating was stripped with acetone, and also some sutures

into which knots were introduced. Tissue culturing took place over 4 months,

with confluency taking longer after the third passage. Cell proliferation was not

complete, and did not have a clear pattern or preference in some areas on the

polymers Experiments were also carried out using Polycaprolactone three-

dimensional tubing with a range of porosities for improving cell-adhesion. More

studies on the relationship between scaffold wall porosity and cell adhesion are

needed, with advances in this area occurring rapidly. As developing a

biodegradable scaffold with seeded cells was not the aim of the research, but

rather the understanding of the requirements from a bioreactor for such tissue

culturing studies, the experiments were not continued. However, preliminary

observations showed that the type of material used as scaffold and the cell

adhesion method used are important factors.

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3.6. LDA experimental set-up The LDA experimental set-up is described below. The CFD simulations and the

LDA visualizations are presented in the Results chapter. Details on the design

of the bioreactor are presented in the Bioreactor chapter of this thesis.

3.6.1. Bioreactor and LDA

The current design of the bioreactor is described in detail in the next chapter.

Here, information on the experimental set-up is presented.

3

Fig 3.6.1. Schematic representation of the experimental set-up

Photographic representations of the experimental set-up are presented in the

Results chapter of this thesis.

The bioreactor, made entirely from glass for better transparency, was connected

to the pump via silicone rubber tubes, and was emersed in a fish tank filled with

water to improve the reflection surface of the laser beam. The water in the fish

1. Personal Computer 2. Laser Doppler Anemometer 3. LDA Cooling System 4. Fish Tank with Bioreactor inside 5. Pump 6. Reservoir

4 2

1

5

6

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tank was changed daily to minimise the noise in the measurements from dust

particles.

3.6.2. Fluid and model vessel

The Bioreactor was filled with a solution of approximately 32.7% Glycerol,

5.2% CaCl2 (by weight) in distilled water to mimic blood viscosity (Mori 1989).

While limitations of this approach are recognised, some suggestions for future

work to overcome these are proposed. In brief, the viscosity of the fluid could

not be kept constant, as the temperature of the fluid dropped (Klabunde et al.

2003; Smith and Kampine 1984) during measurements. Reasonable attempts to

keep the experiment at room temperature were made by adding warm water to

the fish tank in which the bioreactor was submerged. However this did not

include heating the tank, tubes and reservoir of fluid in which the bioreactor

was emerged. Ways for heating need to take into account the sensitivity of the

laser beam to disturbances in the fluid (which can reflect the beam before

reaching the flow inside the scaffold, leading to unrealistic results, or an

inability to measure any flow). To partially overcome those limitations, future

work may involve the incorporation of a hot plate beneath the tank, as well as

hot plates on the sides which do not obstruct the laser beam. Heating the fluid

inside of the bioreactor could be achieved with a separate heated reservoir

through which all of the suspension has to pass before entering the bioreactor.

This heated vessel should be attached to the reservoir (grey filled cylinder in

Figure 3.6.1, above) and should take the solution from and return it to the

reservoir.

Meta DC Coated Particles (Model 10037) were suspended in the Glycerol

solution to enable refraction of the laser beam and allow flow measurements.

The vessel model, which is a glass representation on the desired scaffold, was

used to allow for LDA measurements. Because the scaffold surface is round,

which causes reflection of the beam and makes measurements very difficult,

and the bioreactor has a rounding wall surface, the experiment was submerged

in the water-filled tank with straight angular (90o) walls.

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The glass vessels were manufactured by Bartelt Instruments (Heidelberg West,

Melbourne, Australia) based on the two designs (with and without blockages)

supplied by the researcher and used in the computer modelling.

3.6.3. Pump and reservoirs

Different types of pumps have been used in flow measurements, and all of them

have certain advantages and disadvantages. Roller pumps, although useful for

studying the behaviour of seeded grafts, produce uncontrolled sine wave flows

(Charara et al. 1999). High-pressure systems, for example, generate pulse, but

do not represent physiological conditions. On the other hand, computer-

controlled gear pumps generate a more natural pulse, but are difficult to keep

sterile (while the fluid passes through).

We have used a peristaltic pump (Easy-Load™ Master Flex, Millipore), which

operates by squeezing the outside of the silicone tubes, carrying the blood-like

fluid. Thus, there is no contact of the pump to the surfaces which are

biologically sensitive and require sterility. The operational range of the pump is

6-600 rpm, with a frequency between 50 and 60Hz.

3.7. Ideas for future work

3.7.1. Heating of fluid

For the purpose of stably maintaining the viscosity of the fluid in the

bioreactor during LDA flow measurements, heating options for both the

glycerol (or other) solution and the water in the tank are needed to maintain

a constant room temperature (or body temperature for other solutions).

Heating plates around the tank, a separate heating chamber for the blood-

like solution or alternative methods need to be explored to resolve this

problem.

For the purpose of tissue engineering, the growth medium can be heated by

covering the silicone tubes with a warming jacket, or simply placing the

whole system into an incubator (if there is no need of constant monitoring).

The bioreactor developed in this work can be safely placed inside

commercially available incubators.

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3.7.2. Developing the model vessel from different material

In the present study the model blood vessel was made of glass to allow for a

high degree of transparency, but the limitations of this material are its

stiffness and lack of flexibility, both of which do not correctly represent the

native vessel or the ideal scaffold. Alternative materials, with similar

transparency but also with a reasonable degree of flexibility, need to be

developed for LDA measurements. It is worth remembering that

transparency is not an issue for biodegradable scaffolds used for tissue

engineering, as the cells growing on the material will not permit LDA

measurements.

3.7.3. Blood flow modelling

There are many theories dealing with the changing behaviour of blood. In

this thesis those changes have not been taken into account, but these are to

be considered for future research. It is important to individualise each model

to represent the specific changes occurring in patients’ blood flow so

realistic modelling can be done.

3.8. Conclusions of the Chapter Recent advances in ultrasound have made it possible for non-invasive and

accurate measurements of portal vein blood flow. Computational Fluid

Dynamics (CFD) applied to non-Newtonian blood properties in a branched

vessel by means of specialised software package (FLUENT) assist in

developing a better understanding of hemodynamics in the portal vein. The

results obtained from the computer model can be compared to the flow

measurements in a glass model vessel using Laser Doppler Anemometry

(LDA) The physical experiment is easy to perform for non-experts and has

the advantage of low cost, but some of its limitations include the changing

viscosity of the fluid (due to temperature changes), the stiffness of the

model vessel wall, the errors due to the dependency of the laser beam focus

point on the operator (human error) and the noise due to impurity of the

liquids.

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As part of this research the glass vessels were made as simplified models of

the portal vein based on the dimensions and shape created for the computer

simulations.

A better understanding of the blood flow pattern using modelling and

visualization may help to minimize the thrombogenesis of artificial blood

vessels and organs (Marques et al. 2003).

Tissue culturing experiments have been carried to gain a better

understanding of the required qualities of the bioreactor which was

developed as part of this research and is presented in the next chapter.

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CHAPTER 4

Bioreactor

4.1. Introduction The purpose and benefits of developing bioreactor systems was briefly discussed in

previous chapters. In the current chapter an overview of existing designs, ideas and

principles are presented, aiming to cover the designs most widely used, which have

also contributed to the design of the device used in the research carried out in this

thesis. The design of the device is described and its operational performance is

discussed. Advantages and disadvantages are presented and recommendations for

optimisation are made at the end of the chapter.

4.1.1. The use and historical development of Bioreactors Why do we use bioreactors for tissue culturing? As stated by Martin et al. (2004)

‘By enabling reproducible and controlled changes of specific environmental

factors, bioreactor systems provide both the technological means to reveal

fundamental mechanisms of cell function in a 3D environment, and the potential to

improve the quality of engineered tissues’.

One of the limitations of unperfused in vitro tissue engineering systems for growth

of thick, fully grown three-dimensional grafts is that of cell viability (Kofidis et al.

2003; Kofodis et al. 2003). This, in combination with the desire to have stronger

tissues, has lead many researchers to develop different types of pulsatile

bioreactors. All such systems have shown to be beneficial to the cultured tissue, be

it blood vessel or heart valve, in comparison with tissues grown under steady

conditions.

An experimental bioreactor with multiple chambers was used successfully for

myocardial grafts on collagen components under dynamic conditions (Kofidis et al.

2003). Transparent chambers for tissue growth, which can be assembled in parallel

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so that more than one vessel can be grown under pulsatile conditions

simultaneously and is small enough to fit in an incubator, is presented below

(fig.4.1.1) (figure from original article). The first figure (a) represents the multi

chambers, while (b) shows the experimental set-up as presented by the authors. As

can be seen, such a system is not suitable for growing of 3-D blood vessels, but the

results for smaller grafts are satisfactory.

Figure 4.1.1. Multichamber pulsatile bioreactor (a) and experimental set-up (b) (Kofidis et al. 2003). A bioartificial liver bioreactor, filled with porcine hepatocytes immobilized on

polyester nonwoven fabric (Naruse et al. 2001) operating on a plasma-whole blood

separation principle, is given here as an example of a possible application of these

techniques. Naruse et al. (2001) developed the bioreactor system consisting of two

circuits. One, which was used to separate the plasma and whole blood, and was

thus connected to the model’s circulation, incorporates plasma separation, a plasma

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reservoir and a roller pump. The other comprises nonwoven fabric bioreactors, an

immunoglobulin adsorbent column, an oxygenator and warmer, a dissolved oxygen

meter, a cell filter and a roller pump. Although the results appeared promising, one

needs to be mindful of the fact that, as with any other blood plasma separation

method, negative impacts could be expected. Another feature of the above-

mentioned experiment was that the xenogenetic perfusion obstacles were bypassed

due to the immunoglobulin adsorbent column.

Some researchers (Shinoka 2002) are of the view that once cells are attached to the

three-dimensional scaffold the construction can be implanted in vivo, and that this

will provide the environment for growth and development of the tissue. Ideally, the

scaffold will degrade totally after implantation, but not too fast to jeopardize the

full growth of the new tissue. As an example, Shinoka (2002) constructed scaffold

that would degrade within 6-8 weeks and had 95% porosity.

4.2. Types of Bioreactors

4.2.1. Tissue culture static bioreactors Static type bioreactors provide good culturing conditions for tissue growth. There

are several designs commonly used.

The two most commonly are those for in vitro growing of tissues and those used as

a host for extracorporeal support. Examples of the second type are presented below

in brief, as the next sections deal with the tissue growth devices only.

From the flow point of view these systems either have a continuum of flow passing

through the scaffold, or there is no flow as such, but rather the graft is submerged

in growth medium in a similar manner to tissues grown in petri dishes. Of those

two options, continuous flow provides better mixing of the medium and flow

conditions, which better resemble those that occur in vivo. Discussions on the

benefits of pulsatile flow were presented in the previous chapter and will not be

outlined here (see Methodology chapter for details).

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4.2.2. Extracorporeal bioreactor systems – some examples

Some researchers have used a bioartificial liver (BAL) for plasma perfusion

consisting of a column with activated charcoal and porcine hepatocytes (Khalili et

al. 2001). This system is based on the principles used in apparatus for kidney

dialysis.

Modular extracorporeal liver support (MELS) is a large, very complex system,

suitable for hospital use only and requiring the patient to be connected to the

machine for extensive periods of time. This is the first complete system,

incorporating the “CellModule” which harvests human liver cells, the

“DetoxModule” which replaces the bile excretion function of hepatocytes and

removes albumin-bound toxins, and the optional “DialysisModule” for continuous

veno-venous hemofiltration (Sauer and Gerlach 2002).

3-Dimensional pulsatile horizontal bioreactor, for example, was developed by

Bilodeau et al. (2005) providing perfusion to both the inside and outside of the

seeded graft.

4.3. Development of the Bioreactor used in this study 4.3.1. The initial idea and design

Initially, the bioreactor needed to be able to perform a variety of functions,

including providing an appropriate environment for 3-dimensional blood vessel and

heart valve or flat 2-dimensional tissue film development. Although that would be

possible to achieve by exchanging the stainless steel fixating rings, it was not

needed for the purpose of the research conducted for this thesis and did not

progress any further. The diversity of devices used nowadays meant they are highly

specialised to grow one type of tissue only. One of the initial ideas was to allow for

easy adjustment and re-design of the device by non-engineers so the person

responsible for tissue culturing could perform these tasks. The device needs to be

easily sterilised with widely available sterilisation methods, such as autoclaving. In

the proposed design as developed in this thesis, glass, medical grade stainless steel

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and silicone tubing would be the only materials in contact with the tissue growth

environment, all of which can be autoclaved.

Another requirement was the need for incubation of the whole system to allow

extended periods for tissue growth. The tube, which connects the two inlets and is

used by the pump to provide pulsatility, can be safely driven outside the incubator.

The same applies to the tube providing the outflow from the bioreactor or the

reservoir (i.e. the one which returns the medium to the pump, thus closing the

circuit).

All of those tasks were accomplished and the outcome of the development of such

a bioreactor is presented below in Section 4.3.3. In addition to solving the

requirements outlined above, the design is also inexpensive and can be produced in

large quantities allowing it to be constructed using materials that can be purchased

‘off the shelf’.

4.3.1.1. Parallel plate bioreactor

The flow system developed by Brian Lin (2000), described in this section (Figure

4.3.1.1), consists of an upper reservoir to store the culture medium (Dullbecco’s

Modified Eagle’s medium (DMEM) containing 25 mM HEPES buffer, 10-20%

Foetal bovine serum, and antibiotics). The tubing exiting from the upper reservoir

is wrapped with 3ft. of heating cord using a variable DC power supply to heat the

media to 37oC, which then flows through a flow meter before entering the parallel

plate flow chamber. Such wrapping or alternative heating methods are

recommended as part of future work as a result of the experiments carried out in

this research.

In their design pressure drop due to a height difference between the upper and the

lower reservoirs is responsible for the media flow, which is diffused with a 95% air

with 5% carbon dioxide mixture (in order to control pH levels of the media).

The flow deck is made from cast acrylic, and can be adapted with a variety of

inlet/outlet designs, and silicone rubber with different sizes – for Reynolds numbers

in the order of 100 or less. The top of Lin’s flow deck has three threaded holes: two

are for connectors leading to the inlet and outlet of the flow deck; and the third is

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for the attachment of the vacuum pump to ensure a tight seal between the flow deck

and the bottom of the 35mm culture dish. Silicone sealant is used to prevent leaks.

Figure 4.3.1.1.Parallel Plate Bioreactor (Lin 2000)

The oxygen in the air allows the cells to live under aerobic conditions. The CO2

regulates the pH by providing a buffering system regulated by the chemical

equation

CO2 (g) + 2H2O ↔ HCO3- + H3O+

The reversibility of the carbonic acid-bicarbonate conversion buffers the media by

releasing or removing H3O+ ions from the solution depending on the pH.

Although different types of endothelial cells (from bovine to human umbilical cord)

are used in flow studies the culturing techniques are essentially the same. Usually

the specific cells are acquired and then grown in tissue culture dishes. They are fed

with minimum essential medium along with antibiotics to prevent contamination.

After 1-5 days, confluent cells are detached by exposure to a solution of trypsin-

EDTA. The detached cells in suspension are then centrifuged and discarded. The

remaining attached cells are then remixed with medium at a 1:3 dilution. Then, the

cells are plated on tissue culture dishes, which are sterilized with UV light.

Experiments are then performed when the cells are nearly confluent but not inert.

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For the purpose of experiments carried out in this study, and due to the three

dimensional shape of the scaffold, the cells need to be seeded directly on the

polymer and placed in the bioreactor for incubation. If a simple sheet of cells is

required, then the method outlined above can be applied.

4.3.1.2. Pulsatile Bioreactor – where the idea came from

The idea of simulating the physiological pressure and flow of the growth medium

in bioreactors for culturing tissues in order to achieve higher strength of the vessel

or valve is becoming an area of increased scientific interest.

In early 2000 a technical report by Hoerstrup et al. (2000) on the functioning and

development of pulsatile bioreactor for heart valve culturing provided a foundation

idea of what was required in the bioreactor developed in this thesis.

The design was initially reviewed in my research group, resulting in the bioreactor

presented in Figures 4.3.2.1 and 4.3.2.2 of this thesis. The author’s participation in

the re-design included the following areas:

• Removing the angles in the pressure chamber to avoid ‘dead corners’ where

detached cells might adhere,

• Adding another inlet and creating an angle between inlets and chamber to

allow for better mixing of culture medium,

• Increasing the volume in the perfusion chamber and creating two outlets

positioned central to the perfusion chamber,

Later, as part of the research done in this thesis, further revisions were made and

the bioreactor was substantially modified by:

• Eliminating the screws. In the initial design these were present (see below).

However, rust developed after a few weeks, even though they were made of

stainless steel, which is unacceptable in tissue engineering and can cause

contamination of the culture,

• Designing the body of the bioreactor from glass instead of Plexiglass,

• In the final design, the diaphragm was removed, thus removing one of the

areas connecting the chambers where leakage can occur,

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• The design allowed fixation of the scaffold at both ends (bottom and top),

• Introducing stainless steel as support for the scaffold, thus allowing for non-

stiff, more flexible material to be used for creating the graft.

The bioreactor created by Hoerstrup et al. is presented below, and the picture is

taken from original article (2000).

Figure 4.3.1.2.1 Pulsatile Bioreactor (Hoerstrup et al. 2000)

The body of the bioreactor is made of

Plexiglass; the two chambers are

divided via a 0.5 mm thick silicone

diaphragm. The lower part (the air

chamber) is connected to a respirator

pump. The second chamber

comprises two parts – below and

above where the scaffold is fixed.

There is a provision for changing the

diameter of the scaffold.

1. Air chamber 2a and b are the bottom and top of the perfusion chamber 3. Silicone diaphragm 4. Tube 5. Removable silicone tube 6. Valves inlet 7. Outlet 8. Stainless steel screws

Figure 4.3.1.2.2 Schematic representation of pulsatile Bioreactor (Hoerstrup et al. 2000)

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This work confirmed the importance of sterile conditions, long-term workability

and reliability as some of the most important aspects of developing a bioreactor for

in vitro growth of tissues.

4.3.1.3. Another example of pulsatile bioreactor – aortic heart valve growth

The bioreactor developed by Dumont et al. (2002) for heart valve tissue culturing is

sufficiently compact to fit in an incubator and consists of a left ventricle where the

valve is placed and an afterload part incorporating compliance (to mimic the elastic

functions of the large arteries) and resistances (representing the arterioles and

capillaries). The left ventricle is made out of silicone rubber and its compression

and decompression are achieved by the movement of a piston powered externally

(and its stroke volume can be adjusted to represent different pulsatility flow

conditions). The idea is to simulate physiological conditions ensuring the tissue has

mechanical and hemodynamic properties similar to those of the natural vessel.

The circuit is presented below (Figure 4.3.1.3), with the figure taken from the

original article.

Abbreviations: LV is the Left Ventricle E is the external circuit V is the tissue-engineered valve C is the compliance P is the pressure transducer R is the resistance O is the reservoir A is the aerator M is the mechanical valve

Figure 4.3.1.3. Pulsatile bioreactor for tissue engineered aortic heart valve

(Dumont et al. 2002)

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4.3.2. First prototype of the Bioreactor Following from the designs of Lin (2000) and Hoerstrup et al. (2000), optimization

of certain parts of a prototype Bioreactor, and associated working principles, were

carried out in our research group (Damen 2003; Morsi et al. 2001).

This bioreactor design (Figures 4.3.2.1. and 4.3.2.2.) had to fulfil the following

functions – to grow veins, arteries and valves. Thus, the apparatus was

manufactured from stainless steel and transparent plastic, and had the following

parts:

• The air chamber is powered by an air pump and follows the desired

pulsatility depending on the tissue that is grown (frequency of the heart

cycle if heart valves are grown, arterial pulsatility or smaller vein

pulsatility). It is large enough to provide space for the membrane to move

with the pulsing air.

• The different pressure fibrillates the silicone diaphragm membrane at the

desired pulsatility rate. When the membrane is in the neutral position, fluid

will be sucked out of the perfusion chamber. When it is above the neutral

point, a pulse will be introduced through the perfusion chamber. The

membrane is made of 0.8-mm thick silicone rubber, which can be readily

sterilized.

• The pressure-chamber is filled with blood or a substitute and flows to the

tissue culturing chamber due to the fibrillating membrane.

In the final design presented in this thesis (from Figure 4.3.3.1 onwards) and

developed for the purpose of this research, the diaphragm and air chamber were

removed. This achieved several outcomes. Firstly, the device was easier to sterilize.

Secondly, the screws connecting the air and pressure chambers and holding the

diaphragm in-between these were no longer needed. In the prototype bioreactor,

problems were experienced with the screws, as mentioned above. This resulted in a

smaller gap between the chambers, thus relaxing the membrane and creating a

different, non-uniform push of the flow towards the perfusion chamber.

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The two inlets are made

tangentially to create a

vortex of fluid to ensure

good fluid mixing before

it leaves the chamber

Figure 4.3.2.1. Diaphragm at neutral and above neutral position and the

pressure chamber (Damen 2003; Morsi et al. 2001)

• The tissue is grown inside the perfusion-chamber. This chamber is

customized for the different applications, depending on the intended use of

the bioreactor. The design shown below is for culturing of an artery or vein

without any branches, i.e. a straight tube. A security bridge made out of

three stainless steel bars is used to fix the upper end of the scaffold to the

bioreactor, so they can provide support to the growing tissue during the

cycles of pulsatile flow.

In the final design developed in this thesis, the bridge was removed for simplicity

and a novel way of securing the scaffold was developed. The newly developed

rings make it easier to adjust for a variety of branching options and are much

simpler to assemble and disassemble. Below (in the next section of this chapter) all

parts of the bioreactor are presented, and the assembled device can be seen as well

as the disassembled parts of the system.

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Secure Bridge Upper scaffold securing Outlet Lower scaffold securing Pressure chamber Diaphragm Air chamber

Figure 4.3.2.2. Schematic diagram of the prototype bioreactor (Damen 2003;

Morsi et al. 2001)

4.3.3. New, simplified Bioreactor The body of the bioreactor is made out of one cylindrical glass vessel, with two

inlets and two outlets. As these are part of the body, this minimizes the number of

attached parts. The top part of the body is a semi-sphere with an outlet on the top to

allow for gas mixture to be controlled and to provide opportunity to vacuum the

bioreactor if needed to ensure no air is present in the system. The dimensions of the

Bioreactor are given below.

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Gas mixture and vacuum inlet /outlet Glass lid Connection between lid and body of the bioreactor Metal upper ring For scaffold attachment Outlets Silicone tube showing scaffold attachment to the bottom ring Separation between perfusion and inflow chambers Tangential inlets

Figure 4.3.3.1. Simplified Bioreactor: front view with silicone tubing attached

Two rings inside the body, made of medical grade stainless steel, are used to fix the

scaffold. The materials used were chosen to allow easy autoclaving and provide a

reliable environment for tissue growth on the scaffold. The Bioreactor can be

assembled and disassembled in less than 2 minutes, making it easy for non-experts

to operate, and minimizing the risk of contamination related to handling the parts

after autoclaving.

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The height of the bioreactor without the lid is 180mm, the lower perfusion chamber

is 60mm, and the distance from the bottom of the bioreactor to the outlets is

120mm, the diameter of the body is 100mm and the inlets and outlets have 13mm

diameters.

Both stainless steel rings comprise of an outer ring, which fixes the ring to the

body. These are positioned on specially designed small bumps on the inside wall of

the glass body. The outer ring is connected to the inner ring, to which the scaffold

is fixed with three spikes. They are screwed to the inner rings and only slotted in

the outer rings, thus making it easy to replace the inner ring to fit a different size or

configuration ring for other applications. A detailed view of the rings is shown

below (Figure 4.3.3.2.). A close-up view of the inlets is presented below in Figure

4.3.3.3 to show the principle of media mixing and vortex creation. Photographic

images of the bioreactor lid and the top view (without the lid) of the assembled

bioreactor and of the two rings are shown in Figures 4.3.2.4 and 4.3.2.5,

respectively.

Figure 4.3.3.2. Upper (left) and lower (right) rings with connected spikes

The left spike of the lower ring is unscrewed to show disassembling of the rings.

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Figure 4.3.3.3. Inlets in front and outlets in the background

Figure 4.3.3.4. Glass lid of bioreactor with the gas inlet/outlet

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Figure 4.3.3.5. Assembled Bioreactor with both rings without the lid

The Bioreactor is connected to two glass reservoirs via silicone tubing to ensure

circulation and possibility for exchange of the media solution. One of the reservoirs

has a special outlet-inlet on the top for the purpose of media changing. The two

reservoirs and the silicone tubing are easily autoclavable, thus ensuring the

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biosafety of the tissue culture system. The pulsatility of flow is provided with a

peristaltic pump (Easy-Load™ Master Flex, Millipore Corporation Belford MA

USA, frequency 50/60 Hz, capacity 6-600rpm). This pump operates outside of the

closed sterile system, as the pump pulses on the outer side of the silicone tube

connected to the inlet.

Test runs were carried out to ensure the correct flow of 0.7m/sec was achieved, and

the pump was set to 4.3rpm. A representation of the experimental arrangement is

shown in Figure 3.6.1 in the Methodology chapter.

A technical representation of the lower ring of the bioreactor is given as an

illustration only below (Figure 4.3.3.6). The design can be seen in greater detail

(technical) in Appendix 2 of this thesis.

Figure 4.3.3.6. Technical drawing of the lower ring

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4.4. Requirements of a bioreactor for tissue culture of blood vessels There are generic requirements (Dumont et al. 2002) which bioreactors used for

tissue engineering need to meet irrespective of the culture application. Below is a

list of the requirements most commonly referred to by researchers in the field of

tissue engineering:

• Sterility

• Inclusion of a scaffold or cell matrix (attachment, compatibility)

• Composition and easy exchange of the growth medium

• Control of gas phase and temperature in the incubator

• Ability for gas exchange between the incubator and bioreactor

• Mechanical stimuli (including pressure, shear stress and pulsatility)

• Diversity of applications

• Low price and easy accessibility

• Simple design and small size (needs to be able to fit in an incubator)

• Easy access to the graft

• Transparency (to allow for monitoring of the graft development)

• Ability to work under a variety of hemodynamic conditions (flow, pressure,

pulse and temperature)

Apart from these general requirements the bioreactor has to comply with the

specific need of the tissue depending on its application. Some of those are

discussed below and have been addressed for the purpose of in vitro growth of

portal veins and portal vein shunts. One of the requirements is to be able to grow

portal veins with different diameters and geometry to account of the variety of

physiology of the portal vein in patients. The bioreactor was designed so that it

could be easily adapted to the required size and was easily accessible for exchange

of the parts, which affix the scaffold. The scaffold, to ensure correct flow

conditions, needs to be fixed at both ends, including any branches.

An important factor for growing veins and other in vitro cultured vessels is

mimicking the environment of the human body while maintaining total sterility.

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In this project both continuous and pulsatile flows have been simulated, as the

bioreactor needed to be able to work under both conditions.

The system needs to support a constant temperature of 37°C to ensure optimum

culturing conditions. Another requirement is for constant CO2 level of 5%, which

could be achieved either by addition directly to the media, or to the air above the

media in the bioreactor or one of the reservoirs.

Transparent scaffolding material is used to facilitate flow measurements, although

once seeded with tissue culture, those measurements would be difficult to carry out

and cannot be done using LDA.

The fluid chamber and its inlets and outlets have to provide proper mixture of the

growth media so that it flows in a natural way, thus preventing cluttering of growth

media and loose tissue cells in dead corners. To achieve that and the other aims, the

following design adaptations were made:

1) The inlets were made tangentially to one another and are 2 mm above the

bottom of the bioreactor. The lower chamber, where the mixing of the

medium occurs more rapidly due to the preserved entrance velocity, has a

small angle and narrows in diameter prior to opening again to the perfusion

chamber. In future a steeper angle should be studied, possibly the one used

in the prototype bioreactor.

Figure 4.4.1. Joining of lower and perfusion chambers

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2) Joining of the lower and perfusion chambers (Figure 4.4.1) was made

smooth but also rapid to assist fluid acceleration. Different angles and their

effect on the flow need to be studied to determine the most suitable one.

3) The perfusion chamber is double the size of the lower chamber and had two

outlets situated in the middle of the chamber and on opposite sides.

4) The glass at the point of connection between the body and the lid was

sanded to allow for a closer seal without the need for silicone sealing (if

such a sealant is needed, the design allows this possibility as the two sliding

planes of the body and lid are wide enough to ensure no contact between

sealant and growth medium can occur). It did not leak during the

experiments carried in this research as there was an air cushion above the

liquid medium and the flow did not reach the connection point.

5) The extra outlet/inlet on the top of the lid can be used for vacuuming the

bioreactor if needed or for gas exchange between the bioreactor and the host

incubator, as long as sterility can be maintained, e.g. through the use of an

appropriate filter unit attached to the opening.

6) The inner cylinder (Fig. 4.4.2) of the ring has holes drilled through it to

allow growth media perfusion. The part where the scaffold attaches to the

cylinder is thinner, whereas the area where the spikes attach is thicker for

extra support and strength.

7) The spikes, which connect the outer rings to the inner cylinders, are round

bars, which screw to the inner cylinder only and slide freely in the other

ring (Fig 4.4.3).

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Figure 4.4.2. Close up of central area where the scaffold is attached

Figure 4.4.3. Inner cylinder and spikes

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Figure 4.4.4. Bioreactor during LDA measurements

For the purpose of LDA measurements the glass model of the portal vein was fixed

at the bottom ring only, which did not have implications for the stability of the

vessel. If softer scaffold is used, then upper and lower fixation will be needed.

Figure 4.4.4. shows the laser beam passing through the middle of the glass vessel at

the focal point of the laser during LDA measurements.

4.5. Advantages and disadvantages of the bioreactor

4.5.1. Advantages of the new bioreactor design 1. Different bioreactor systems use a variety of methods to prevent leakage in

areas of connection between parts of the bioreactor. Some use adhesive

cement and/or silicone sealant, while others use bolts and metal braces, or a

glue and rubber isolator. The bioreactor developed in this thesis can, if

required (e.g. if the pulsatile flow produces considerable pressure or simply

as an extra precaution against leakage), be sealed from the outside with

silicone or any other material. The sealant will not be in contact with the

media or tissue as the only place where those two parts of the bioreactor

(the body and lid) meet is above the level of the media. The surface where

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the two parts of the bioreactor join has been mechanically treated and will

adhere well without the need for extra sealing. Those surfaces are wide

enough to allow outside sealing without any risks of the sealant coming in

contact with the sterile environment inside the bioreactor. Silicone grease

can be used to improve the sealing and a gasket or similar device will need

to be used if better leakage protection is needed or the medium reaches the

connection between the body and the lid. This is one of the advantages of

having the main body of the bioreactor as a single part.

2. The body of the bioreactor is made out of a single glass vessel providing

transparency to monitor the tissue growth. It is easy to sterilise and is low

cost to manufacture.

3. On the top of the lid there is an extra inlet/outlet for gas exchange between

the incubator and bioreactor. This inlet/outlet can be sealed when the

bioreactor is taken from a sterile system (e.g. a biosafety cabinet) or if not

needed. This outlet can also be used for vacuuming the system.

4. The two media inlets, which are part of the body of the bioreactor, are made

tangentially to one another and are few mm above the bottom of the

bioreactor. This allows better mixing of the growth media and creates a

small vortex. In this way, the initial velocity of the flow entering the

bioreactor can be preserved, if not accelerated, until the flow reaches the

perfusion chamber.

5. Medical grade stainless steel is used to manufacture the rings, spikes and

cylinders, which secure the scaffold and hold it in place. The inner cylinder

(Fig. 4.4.3) where the scaffold is attached has holes drilled through it to

allow growth media perfusion. In this way nutrients will be able to reach the

ends of the graft enabling complete tissue growth. The spikes, which

connect the outer rings to the inner cylinders, are round bars, which screw

to the inner cylinder only and slide freely in the other ring (Fig 4.4.2). As a

result, the only part that would need to be changed to facilitate a different

diameter, shape or even branching of the scaffold would be the inner

cylinder. The bottom one does not require changing, apart from varying the

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diameter, but the principle of attachment is same for the bottom and top

cylinders.

6. The bioreactor has only five parts – body, lid, two rings and tubes. The first

two are made of glass, the rings are made of stainless steel, and the tubing is

silicone. All those parts are easy to sterilise, and the system is very easy to

assemble and disassemble.

7. The bioreactor together with the reservoirs can easily fit in a standard

incubator.

8. The system can operate under continuous or pulsatile flow as required for

the specific application.

4.5.2. Disadvantages of the new design From experience, there are only few disadvantages of this device, but extensive

testing in the future might uncover more areas for improvement.

1. Glass is very fragile and extra care is needed when operating and storing the

device.

2. The stainless steel parts are heavy and difficult to fabricate.

3. The inlet/outlet on the lid is difficult to seal as it is smooth (possible

improvement could be a screw top or an attachment onto which a standard

sterile filter unit can be added).

4. There is no provision for heating the growth media and hence the apparatus

must be placed in an incubator.

Some suggestions for future work and optimisation of the bioreactor are outlined

below.

4.6. Future work and optimization of the device Some work and testing needs to be carried out in the following areas:

1. Heating the growth medium either within the bioreactor or while in the

reservoirs or tubes outside the device is needed to ensure optimal tissue

culturing conditions. While this is currently achieved by placing the

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bioreactor in an incubator, an alternative could be to use a similar system to

that described in the parallel plate bioreactor (Section 4.3.1.1). This utilises

heating of the tubing exiting one of the reservoirs by wrapping it in a 3ft

heating cord.

2. Tests with different angles of the inlets need to be carried out to determine

the best one from a hemodynamic point of view.

3. Different joining angles between the lower and perfusion chambers and their

effect on the flow need to be studied to determine the most suitable one.

4. Creating a screw lid for the inlet/outlet of the bioreactor’s lid to allow for

better sealing.

5. Designing and testing of other types and different shapes of scaffold.

4.7. Conclusion For the purpose of the research carried out in this thesis, a novel bioreactor with a

simplified design had been developed. The small number of parts allows easy

assembling by non-experts. The materials used (glass, medical grade stainless steel

and silicone tubing) can be sterilised by commonly used methods, including

autoclaving.

Silicone sealant can be used on the outer surface of the connection between the

body of the bioreactor and the lid to prevent leaks after the system has been

sterilized and assembled.

The device can be easily modified to accommodate vessels of different size,

diameter and branching geometry, by simply exchanging the top cylinder to which

the scaffold is attached.

The maximum cost of manufacture of the bioreactor is AUD 500. This cost will be

lower if a larger quantity is manufactured. The bioreactor can be easily

decontaminated, washed and re-used as required.

The design allows for control of the flow conditions and media mixture (including

media exchange). There are no moving parts within the bioreactor.

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The durability of the medical grade stainless steel parts have been tested by being

left in a glycerol solution for over two weeks without any indication of rusting. The

first prototype bioreactor (Section 4.3.2.) showed rusting within the first week of

exposure to glycerol solution and this test made sure the new device would not face

similar problems.

Nevertheless, there are several areas, as outlined above, which need to be

investigated further and could lead to improved performance of the apparatus.

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200

CHAPTER 5

Measurements, Simulations and Results

In this chapter the results from Laser Doppler Anemometry measurements of

simulated flow and the corresponding FLUENT computer simulations of the

same vessels are presented and described. The physical experiment has been

designed based on the computer model to allow for comparison of the results

using both methods. The CFD computer model has been simulated using a

variety of parameters, including Newtonian and non-Newtonian flow, low and

high velocity, and adding the effects of gravity, pressure and predetermined

outflow from each outlet (branch). The model used for the LDA measurements

had non-Newtonian flow simulated, and was compared to the non-Newtonian

results from the computer simulation. FLUENT provides information on many

parameters and combinations between relationships of parameters, and some of

the opportunities for obtaining a variety of information will be presented later in

this chapter. Some suggestions for optimization and future work are also given at

the end of the chapter.

5.1. Geometry and Grid generation

5.1.1. Grid generation

Research groups in the last decade have used a variety of computational cell

numbers in blood vessel modelling. That number depends on the shape of the

vessel, the complexity of the flow and the need for accuracy. For modelling of

real-life carotid bifurcation, the mesh was generated using CFX4 code, after the

refinement was set to 17,920 eight-noded cells, as a further decrease in the mesh

size did not show any significant difference in velocity prediction (Starmans-

Kool et al. 2002). For modelling of a vascular tube with two stenotic areas,

Gurlek et al., used between 17,000 and 26,000 triangular computational cells in

FLUENT (2002). A four-noded cell volume grid containing 1,600 for normal and

1,800 for stenotic vessel cells, respectively, has been used in simulations of

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201

pulsatile arterial flow (Marques et al. 2003). Other authors (Moore et al. 1998)

have used 18,000 to 51,000 cells depending on the resolution of MRI to achieve

mesh independence.

The grid used in this study contained 27,457 computational tetrahedral and

hexahedral grid cells for the normal non-obstructed model, and 60,731 cells for

the obstructed model (Petkova et al. 2003). Although that number might seem

large, this is the optimal number of computational cells for solving the flow

problem, above which no improvement in accuracy can be achieved.

5.1.2. Scaling

Many studies use scaling of the model blood vessel to allow for easier

measurements (Bonert et al. 2003; Yedavalli et al. 2001). Although scaling can

be necessary to visualize very small vessels (Jalan et al. 2004), it was not found

to be imperative in measurements of portal vein model vessel. When a model has

been scaled up, the flow pattern will be different because the shear rate will

change with the change in the diameter. Hence, the ‘cell-free’ wall zone will take

a smaller percentage of the cross-section area of the flow and the viscosity will

change. Some of these discrepancies can be overcome mathematically, but the

intention here was to develop a simple, easy to use model and, hence, no scaling

was applied in the experimental or computer simulation work. The experimental

vessel was manufactured according to one that was computer generated and is

identical (as far as possible) to the vessel used in solving the computer flow

problem.

5.2. Model assumptions

5.2.1. Geometry

5.2.1.1. 3-D geometry

In the model developed here, planar geometry has been assumed for simplicity

and to generalise the findings. In recent years the importance of real-life, non-

planar geometry has attracted much attention and the work presented below in

this thesis needs to be repeated with a replica of the natural portal vein without

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202

the idealisation. The only problem with this approach is that the model has to be

individually tailored to each patient to be realistic. This will increase the cost and

time of modelling significantly, but is needed to further our understanding of

hemodynamics within the portal circulation. Planar bifurcation is an acceptable

assumption (Starmans-Kool et al. 2002), and rigid (non-compliant) walls are

widely used even in artery models (Siro et al. 2002; Starmans-Kool et al. 2002;

Xu et al. 1999) although this assumption affects the accuracy of shear stress

values.

5.2.1.2. Size, diameter and branching

The current model has been created as a symmetric branched vessel, where the

branches on the left side are identical to (or very much alike) the branches on the

right.

A circular diameter has been assumed in most parts of the vessel, with the

exception of the areas where the diameter size changes or branching occurs, and

in the areas of obstruction. The reason behind creating a simplified model of the

portal vein is to allow for 2-D LDA measurement using available equipment

(which can be found in most fluid research laboratories) and to produce a base

model, upon which future patient-specific models can be created. The two

vessels are identical apart from the areas of blockages to research into the impact

those areas have on the flow behavior.

The dimensions of the models are given in Table 3.3.4.1 in the Methodology

chapter, and are as follows: the inlet diameter is 10mm, primary branches have

8.5mm diameters, and the diameters of the secondary branches are 6.375mm.

The total height of the vessel is 91mm.

5.2.2. Flow

5.2.2.1. Common flow assumptions

Laminar flow is assumed in this thesis, which is a commonly used assumption in

CFD modelling (Gurlek et al. 2002; Starmans-Kool et al. 2002; Xu et al. 1999).

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203

Fully developed axial flow is a commonly used inlet assumption (Gurlek et al.

2002; Jensen 1996; Moore et al. 1998), and constant pressure as the outlet

boundary condition can be used (Gurlek et al. 2002).

Some authors assume zero velocity, since the initial conditions are unknown

(Marques et al. 2003).

Newtonian flow is an accepted assumption in large vessels, as discussed in the

Methodology chapter earlier, and this work has been carried out to simulate both

Newtonian and non-Newtonian flow behaviour. A brief presentation on

Newtonian flow is given later in this chapter, but more emphasis is given to non-

Newtonian simulations, as the current model is capable of solving those

problems.

5.2.2.2. Observations

When negative values of shear stress are recorded at a point, this is an indication

that the shear stress there is in the direction of the flow (Starmans-Kool et al.

2002).

During Laser Doppler Anemometry (LDA) measurements, it was observed that

neighboring points in the vessel showed very different flow behavior. Some

areas, where the flow was quickly accelerating, were next to areas of slower,

even reversed flow in some instances. On some occasions, flow occurred in a

different direction. The selection of points for the LDA measurements has been

made in a way to ensure more points are selected in and around areas of

blockages and branching. All points are measured on the Z=0 plane and each row

of points has constant Y value. The details of the points (including the measured

values) are shown in appendix 5 of this thesis alongside comparisons between the

measured and computer generated flow at those points. The LDA measurements

were carried first out, and then the same points were selected in the computer

model to cross-check their behavior.

In the computer model, the definition of the different phases in the stream is very

important, as the size and quantity of each phase affects the flow significantly.

Hence, another factor, which appears to affect the blood flow within the portal

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204

vein, is the number and size of blood cells in the patient. It would be worth

examining the effects of the blood composition on the flow in other vessels, as

this can prove important not simply for predicting areas more likely to attract cell

deposition and obstructions, but for the overall flow properties. Some of those

visualisations are presented later in this chapter in the section on particle

tracking.

5.3. Benefits and limitations

CFD simulations offer superior accuracy (Starmans-Kool et al. 2002), but are

difficult to be validated as there is no set standard, and the models are

individualised to correlate with the in vivo data of only one patient.

Studies concentrating on the errors of modelling are not comprehensive (Moore

et al. 1998) and are an area requiring extensive research.

Physical modelling, based on data obtained from in vivo measurements, can also

provide valuable information to physicians about blood flow pattern, wall shear

stress and areas most likely to be affected by thrombosis, (Yedavalli et al. 2001)

but creating such models is more time-consuming and usually requires scaling of

the vessel.

Comparison between physical experiments and computer modelling are difficult

to make, but are beneficial and necessary for validation of the simulations.

Identical conditions in the two models (Henry et al. 1997) are needed and vessel

geometry has to be much the same in both. The particle paths in the numerical

model can be compared to the visualised flow pattern in the physical model

(Henry et al. 1997). In this study, comparisons of the two simulations have been

made and the results are presented below. As outlined above, the shape and size

of the model used in the LDA measurements was determined using the

parameters from the computer-generated model, and are nearly identical.

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5.4. Visualisation

In this thesis, FLUENT visualisation of velocity contours and wall shear stress

distribution in both normal and stenotic vessels was modelled, in accordance to

Gurlek et al. (2002) and Petkova et al. (2003). Details on the model and fluid

parameters are given in the previous chapter.

Many factors affect the flow through a stenotic area according to CFD

simulations, including Reynolds number, structure geometry and size of

obstruction, viscosity, flow velocity and pressure.

Comparisons between stenotic and normal flow using the same flow conditions

(Marques et al. 2003; Petkova et al. 2003) are presented in Section 6 of this

chapter.

Figure 5.4.1. LDA visualisation experiments of obstructed vessel in bioreactor For LDA experiments, the laser beam was focused inside the inner left sub-

branch of the model while flow measurements are made, as seen in Figure 5.4.1.

One of the difficulties in those measurements was the round surface of the vessel,

which reflected the light and did not allow for measurements immediately next to

the wall. In future, the glass model will need to be modified to aid LDA as

follows:

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* the shape needs to have 90° angles, similar to those of the tank in which the

bioreactor was immersed, to allow easy laser penetration and to minimise light

reflection

* the inside shape of the vessel needs to be preserved to represent realistic flow.

The cross section of future designs of the glass LDA model may need to be

something like the one presented below in Fig. 5.4.2.

Figure 5.4.2. Cross-section of the inner diameter of an ideal glass vessel and

the outside square shape

Figure 5.4.3. LDA visualization experiments with normal (non-obstructed)

model in bioreactor

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Figure 5.4.4. Laser beam through the glass model – side view

The bubbles that form in the water solution (water plus additives to simulate

blood viscosity plus reflector particles) ‘stick’ to the wall and their impact on the

measurements is minimal (Figs. 5.4.3 and 5.4.4). However, regular removal of

the bubbles was undertaken to improve the accuracy of the measurements.

Figure 5.4.5. LDA experimental setup

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The bioreactor was placed inside a large tank filled with water to minimise the

reflection of the laser beam (Figs. 5.4.5 and 5.4.6). The bioreactor itself was

filled with a clear solution mixed so as to mimic the viscosity of blood while

being transparent to aid measurements. Refracting particles (Meta DC Coated

Particles (Model 10037)) were added to the solution. The vessel glass model was

mounted inside the bioreactor, and the flow velocities within it were measured. A

black background was placed opposite the laser to minimise the effects of beam

reflection from the far wall of the tank. The pump and two reservoirs were

situated outside the tank. Due to the unavailability of a movable platform onto

which the laser head could be mounted and then moved to measure different

points in the model, manual elevation and movement in the x-direction had to be

carried out, thus increasing the percentage of error. With more complete or

advanced machinery, the measurements need to be repeated for accuracy.

Figure 5.4.6. Water tank with bioreactor submerged in it, the reservoir

behind (top of photo behind the tank) and LDA on the right of the tank

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5.5. Mathematics and parameters

The values of k and n used in this study were obtained from data of shear rate

versus shear stress by Syoten Oka (Syoten 1981, page 35, taken from Huang et al

1975) and are graphically presented below in Figure 5.5.

This relationship determines the changes in the viscosity of whole human blood,

and in this case has been obtained using a Weissenberg Rheogoniometer.

Those values are obtained by mathematical conversion using log functions,

where Series 1 is based on the parameters as per reference (Syoten 1981) and

Series 2 are the values after conversion. One of the main reasons for using the

log function was to obtain the values of k and n for which the angle between the

line of points (Series 2) and the x-axis had to be known. Those values were used

in setting the CFD model parameters using the non-Newtonian Power Law.

y = 2 .0727x 0.48 51

y = 0 .2073x 0.4 85 1

0

1

2

3

4

5

6

7

0 2 4 6 8 10 12

S ta in R a te

h e a r S tre ss

8

S

S eries1S e ries2P ow er (S e ries1 )P ow er (S e ries2 )

Figure 5.5. Calculating k-n parameters for use in the Power Law equation in FLUENT Figure 5.5. represents the relationship between Shear Stress (y axis) and Stain

Rate (x axis) for whole blood.

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The points were calculated based on the experimental values as outlined in

(Syoten 1981) and are presented in the table below (after mathematical

conversion).

X axis 0.7; 1.45; 2.1; 2.95; 3.6; 4.25; 5.6; 7; 8.3; 9.6

Y axis 0.18; 0.245; 0.31; 0.35; 0.37; 0.398; 0.445; 0.52; 0.6; 0.68

5.5.1. Continuity and Momentum Equations

For all flows, FLUENT solves conservation equations for mass and momentum.

For flows involving heat transfer or compressibility, an additional equation for

energy conservation is solved. For flows involving species mixing or reactions,

species conservation equations are solved or, if the non-premixed combustion

model is used, conservation equations for the mixture fraction and its variance

are solved. Additional transport equations are also solved when the flow is

turbulent (Petkova et al. 2003). In this section, the conservation equations for

laminar flow (in an inertial, non-accelerating, reference frame) are presented.

The Mass Conservation Equation

The equation for conservation of mass, or continuity equation, can be written as

follows:

210

( ) mSvt

=⋅∇+∂∂ rρρ

(5.5.1.1.)

Equation (5.5.1.1.) is the general form of the mass conservation equation and is

valid for incompressible as well as compressible flows. The source Sm is the mass

added to the continuous phase from the dispersed second phase (e.g., due to

vaporization of liquid droplets) and any user-defined sources. In this case it is 0.

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Momentum Conservation Equations

Conservation of momentum in an inertial (non-accelerating) reference frame is

described by

211

( ) ( ) ( ) Fgpvvvt

rrrrr++⋅∇+−∇=⋅∇+

∂∂ ρτρρ

(5.5.1.2.)

Where p is the static pressure, τ is the stress tensor (described below), and

and

gr

ρ

Fr

are the gravitational body force and external body forces respectively.

is given by The stress tensor τ

( ) ⎥⎦

⎤⎢⎣

⎡⋅∇−+∇= Ivvrr

32μτ ∇v T

r

(5.5.1.3.)

Where μ is the molecular viscosity, I is the unit tensor, and the second term on

the right hand side is the effect of volume dilation.

5.5.2. Viscosity equations

Viscosity for Non-Newtonian Fluids

For incompressible Newtonian fluids, the shear stress is proportional to the rate-

of-deformation tensor : D

Dμτ =

(5.5.1.4.)

Where D is defined by

⎟⎟⎠

⎜⎜⎝

∂∂

+∂

∂=

j

i

i

j

xu

xu

D⎞

(5.5.1.5.)

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And μ is the viscosity, which is independent ofD . For some non-Newtonian

fluids, the shear stress can similarly be written in terms of a non-Newtonian

viscosity η:

212

( ) DDητ =

(5.5.1.6.)

In general, η is a function of all three invariants of the rate-of-deformation

tensorD . However, in the non-Newtonian models available in FLUENT, η is

considered to be a function of the shear rate γ& only. γ& is related to the second

invariant of D and is defined as

γ& DD :=

(5.5.1.7.)

FLUENT provides four options for modelling non-Newtonian flows:

• Power law

• Carreau model for pseudo-plastics

• Cross model

• Herschel-Bulkley model for Bingham plastics

In the simulations presented in this thesis, the non-Newtonian power law was

used and is described below.

Power Law for Non-Newtonian Viscosity

The non-Newtonian-power-law model was used in this study (FLUENT 6.0

Manual, Chapter 7.3.5), where the non-Newtonian viscosity is calculated as:

TTn ek 01−= γη &

(5.5.1.8.)

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FLUENT allows upper and lower limits to be placed on the power law function,

yielding the following equation:

maxmin1 0 ηγηη <=< − TTn ek &

(5.5.1.9.)

where k, n, T0, ηmin, and ηmax are input parameters.

k is a measure of the average viscosity of the fluid (the consistency index); n is a

measure of the deviation of the fluid from Newtonian (the power-law index) (as

described below); T0 is the reference temperature; and ηmin and ηmax are the

lower and upper limits of non-Newtonian viscosity used in the power law,

respectively. If the viscosity computed from the power law is less than ηmin, the

value of ηmin will be used instead. Similarly, if the computed viscosity is greater

than ηmax, the value of ηmax will be used instead. Table 3.3.4.2 in the

Methodology chapter shows how viscosity is limited by ηmin and ηmax at low and

high shear rates in this model. The value of n determines the class of the fluid:

n = 1 Newtonian fluid

n > 1 shear-thickening (dilatant fluids)

n < 1 shear-thinning (pseudo-plastics)

The outflow at each outlet was predetermined, and the weighting percentage is as

follow: outlets 1 and 2, 15% each; outlets 3 and 4, 35% each. Outlets 1 and 2 are

on the left side and 3 and 4 on the right hand side in this model. This was done

not to represent medical conditions, but to show the possibilities available to

manipulate the model on demand (if severe pressure is applied in only one of the

branches, for example, due to stenosis, or fibrosis of one lobule only). From a

physiological point of view it is expected that the branch entering the larger liver

lobe will have a higher outflow rate.

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5.6. FLUENT models: simulation results

5.6.1. First model visualization

Before the more complex and idealised model used in this thesis was developed,

the computer model was tested with a simple structure as presented below. The

purpose of this modelling was to explore possibilities and to show the multiple

applications of the work (i.e. that this model can be converted to any other part of

the circulatory system).

Figure 5.6.1.1. 3-D Grid of simplified blood vessel structure

The material (fluid) used was water-viscose (water with added viscosity).

To represent the viscosity, the non-Newtonian-power-law was used (and for

consistency with the realistic simplified model as shown above in this chapter)

with the following parameters: K=0.001 and N= 0.7, the temperature was set at

(K) = 310o, the minimum viscosity was 0.001 and the maximum viscosity was

0.01. The flow was assumed to be laminar, the energy equation was activated and

the default operating conditions of FLUENT were used.

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Figure 5.6.1.2. Contours of static pressure (MPa) in a vessel, assuming

identical outflow from both branches

Figure 5.6.1.3. Velocity vectors coloured by velocity magnitude (m/s) in a

vessel, assuming identical outflow from both branches

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Figure 5.6.1.4. Contours of wall shear stress (Pascal) in a vessel, assuming

identical outflow from both branches

Figure 5.6.1.5. Contours of boundary cell distance in a vessel, assuming

identical outflow from both branches

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Depending on the information one desires to obtain from the model,

visualisations on a variety of planes “cutting through” the vessel can be made.

Those planes can be parallel to one of the axes, or under a customised angle if a

cutting plane representing the flow parameters in a different plane is required (for

example, a cutting plane under 45o to the x-axis).

Once created, the planes can be used to represent any given parameter such as

pressure, velocity or stress, or any combination of such parameters.

Below (Figs. 5.6.1.6 and 5.6.1.7) are examples of multiple planes parallel to the

x-axis for velocity vectors coloured by velocity magnitude.

Figure 5.6.1.6. Cutting planes parallel to the x-axis of velocity vectors

coloured by velocity magnitude

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Figure 5.6.1.7. Cutting planes positioned within the model representing contours of velocity magnitude To achieve reliable results, a minimum number of 100 iterations are needed

before conversion of the results (i.e. before the equations are solved). Below (Fig

5.6.1.8) is a representation of the residual conversion for this model, including

continuum equation, the velocity in direction of the three axes and the energy

equation. In the other models discussed in this thesis similar numbers of

iterations were applied.

Figure 5.6.1.8. Scaled Residuals

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5.6.2. Comparison between models with and without obstructions

The outflow was pre-defined with flow rate weightings of 0.15 for each of outlets

1 and 2 (left branch) and 0.35 for each of outlets 3 and 4 (right branch). In both

models the same parameters were used and the following results were obtained

(Figures 5.6.2.1-5.6.2.4). Differentiation of the flow rate in the outlets was used

based on the fact that the two lobes of the liver are of different size (the right

lobe is over 6 times larger than the left one (Gray 1995)), but mainly because the

effects of resistance from different parts of the liver on the blood flow were

considered.

For all figures below, (a) represents simple, non-obstructed vessel, whereas (b)

shows the flow in a model with additional obstructions.

Figures 5.6.2.1(a) and 5.6.2.1(b) show velocity contours on an x-y plane cutting

through the middle of the geometry. Figures 5.6.2.1(a) and 5.6.2.1(b) show that

there are significant changes in the velocity magnitude in the two models. This

model was created assuming that the problem causing portal hypertension

originated in the liver, such that the portal venous flow was diminished and the

portal vein pressure was 3922.66 Pascal (40 cm H2O). In this case there are two

possible conditions: Figure 5.6.2.1(a) shows the velocity magnitude if there were

no additional complications in the portal vein, whereas Figure 5.6.2.1(b) shows

the additional complication of portal vein thrombosis and the impact on blood

flow. In this model, there is no additional decrease in velocity, and so it gives the

most favourable picture of this condition (i.e. hypertension). Figure 5.6.2.1(c)

shows a closer view of the obstructed area of Figure 5.6.2.1(b).

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Figure 5.6.2.1.(a) Contour of velocity magnitude on an x-y plane cutting through the middle of the geometry (Z=0 plane) without obstructions

Figure 5.6.2.1.(b) Contour of velocity magnitude on an x-y plane cutting through the middle of the geometry (Z=0) with obstructions

Figure 5.6.2.1.(c): Closer view of the contour of velocity magnitude on Z=0

plane with obstructions.

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Figures 5.6.2.2(a) and 5.6.2.2(b), below, show pressure contours on an x-y plane

cutting through the middle of the geometry (Z=0 plane). These correlate with the

findings of Figures 5.6.2.1(a) and 5.6.2.1(b). The zones of low pressure, which

were typical for the two higher flow outlets (Figures 5.6.2.2(a) and 5.6.2.2(b)),

have “moved” to the areas of the obstructions, thus increasing the pressure in the

low flow outlets (Figure 5.6.2.4(b)).

Figure 5.6.2.2.(a) Contour of static pressure on Z=0 plane of the geometry

without obstructions

Figure 5.6.2.2.(b) Contour of static pressure on Z=0 plane of the geometry

with obstructions

Figures 5.6.2.3(a) and 5.6.2.3(b), below, show the contour of strain rate on an x-y

plane, cutting through the middle of the portal vein. In Figure 5.6.2.3(a) the strain

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rate is uniform through the portal vein according to the velocity distribution,

whereas in Figure 5.6.2.3(b) the contour of strain rate is not uniform because of

the existence of obstacles in the blood flow. As expected, the strain rates are

higher in the constriction created by the obstruction. The colour charts are not

similar, and it needs to be noted that the top red area of the scale in figure (a) has

the same value as the middle of the scale (light blue) in figure (b), showing that

the high strain rates in the normal vessel are in the middle range of the model

with the obstructions.

Figure 5.6.2.3.(a) Contour of strain rate on Z=0 plane cutting through the

middle of the geometry without obstructions

Figure 5.6.2.3.(b) Contour of strain rate on Z=0 plane of the geometry with

obstructions

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Figure 5.6.2.4.(a) Contour of wall shear stress on Z=0 plane without

obstructions

Figures 5.6.2.4(a) and 5.6.2.4(b) show contour of wall shear stress near the wall

on an x-y plane cutting through the middle of the geometry (Z=0). The

obstructions in the portal vein decrease the available cross section area. This

reduction of available cross section area ultimately introduces higher strain rates

around the obstructions. The higher strain rates around the obstructions results in

significantly higher shear stress near the wall, as presented in Figure 5.6.2.4(b).

The portal vein without obstructions (Figures 5.6.2.3(a) and 5.6.2.4(a)) show

much lower values of strain rates and wall shear stress.

Figure 5.6.2.4.(b): Contour of wall shear stress on Z=0 plane with

obstructions

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5.6.3. FLUENT comparisons of different velocities

Below is an example of Newtonian flow through the normal (no obstructions)

model visualized for two different velocities. Strain rate is higher the higher the

velocity in the not obstructed model.

Figure 5.6.3.(a). Contours of strain rate when velocity is set at 0.0015m/s

Figure 5.6.3.(b). Contours of strain rate when velocity is set at 0.0225m/s

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5.6.3.1. Velocity magnitude

One example with the obstructed vessel is shown below, where all model

parameters are identical and only the velocity has been varied. Figure 5.6.3.1.1

represents simulations in which the velocity is 0.07m/s while the velocity in

Figure 5.6.3.1.2 is less than 25% of the first – 0.015m/s. Some of the readily seen

differences are in the left sub-branches, and the outer right sub-branch, next to

the obstruction in the left main branch, and the obstructed area in the main

vessel.

The scale on the left hand side of the graph is considerably different for both

velocities, and is not uniform. This was done to make full use of the colours that

represent the velocity.

Figure 5.6.3.1.1. Z=0 plane contours of velocity magnitude when velocity is

simulated at 0.07m/s

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Figure 5.6.3.1.2. Z=0 plane velocity magnitude when velocity is simulated at

0.015m/s

5.6.3.2. Visualization opportunities with FLUENT

Below are some examples of the different visual representations achieved using

FLUENT. Depending on the objective, one can visualize close to the vessel wall

(with or without the grid being displayed), in a “cutting plane” (horizontal,

vertical or under a certain angle) or in the default interior of the model vessel. In

this thesis, the Z=0 plane was used most often, as it “cuts” the vessel through the

middle, dividing it onto anterior and posterior parts. Each parameter can be

varied individually to represent different pressure, velocity or outflow. Another

available option is to vary the two parameters one wants to compare (for

example, velocity vectors coloured by X, Y or Z velocity, or by static pressure,

or stress). Figures 5.6.2.3.1 to 5.6.2.3.5 have used a velocity assumption of

0.07m/s, and the following figures (5.6.2.3.6 and 5.6.3.2.7) represent a velocity

assumption of 0.015m/s.

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Figure 5.6.3.2.1. Velocity vectors at the wall with grid coloured by velocity

magnitude (m/s) when velocity is simulated at 0.07m/s

Figure 5.6.3.2.2. Velocity vectors at the wall without the grid coloured by

velocity magnitude (m/s) when velocity is simulated at 0.07m/s

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Figure 5.6.3.2.3. Contours of the wall shear stress (Pascal) (at the wall)

Figure 5.6.3.2.4. Velocity vectors in the Z=0 plane coloured by Y velocity

(m/s)

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Figure 5.6.3.2.5. Velocity vectors in Z=0 plane coloured by static pressure

(Pascals)

Figure 5.6.3.2.6. Histogram of frequency of velocity magnitude (with velocity assumption of 0.015m/s) This histogram represents the distribution (frequency) of the velocity magnitude

through the vessel, showing that although a velocity of 0.015m/s has been set, it

is not uniform throughout the vessel. The most common velocity was the one

predetermined, but a lower velocity of 0.005 to 0.0075 is frequently observed.

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There are areas of higher than the average velocity, with some areas where the

velocity is double that of the average (i.e. 0.03 and above).

(mm) Formatted: Font: 9 pt

Figure 5.6.3.2.7. Static pressure verses position in the model in the Z=0 plane Figure 5.6.3.2.7 represents the static pressure (y axis) within the vessel (x axis) at

Z=0 plane. The 0 point on the x axis is the middle of the vessel, and as most of

the outflow has been set to flow through the right branch, there is an increase in

static pressure in the left branch. Those figures are given only to illustrate the

range of information which can be obtained using the developed computer

model.

5.6.4. Particle tracking

FLUENT allows for particle tracking after the flow has been set as multiphase

and the size and concentration of each phase has been determined. For the

purpose of these simulations, the size and frequencies were determined based on

data from the literature as presented in the methodology chapter (3.4.1

Rheological properties of human blood). Four phases were simulated –

leukocytes, erythrocytes, platelets and plasma - and particle tracking for each of

them (when the velocity is assumed at 0.07m/s) is presented below. The particles

are assumed to enter from the inlet, and the wall is assumed to be a non-moving,

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rigid surface. The colour scheme is uniform to highlight the differences between

the four phases.

Figure 5.6.4.1. Leukocyte particle traces coloured by velocity fraction

Figure 5.6.4.2. Erythrocyte particle traces coloured by velocity fraction

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Figure 5.6.4.3. Platelet particle traces coloured by velocity fraction

Figure 5.6.4.4. Plasma particle traces coloured by velocity fraction

The four figures above (5.6.4.1 to 5.6.4.4) are using the same scale and show the

difference in the velocity and particle distribution of each of the four phases.

They illustrate that each phase has a different behavior, for example the

leukocytes show highest overall velocity than the other phases, and they are

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moving fastest to the left side of the vessel and slowest on the right side. The

platelets and erythrocytes have their respective highest velocities through the

right side of the main vessel and the two right oriented sub-branches of the left

and right branches. Such information can be useful if a particular phase (be that

blood cells of other particles carried by the blood) are know to ‘stick’ to the

vessel wall and cause obstructions.

If needed, each particle in each phase can be tracked separately, and below is an

example of five different particle streams, all of which are leukocytes.

Enlargements of these figures are presented enlarged in Appendix 3, and all have

uniform scale (left hand side).

(a) (b) (c)

(d) (e)

Figure 5.6.4.5. Single stream particles

5.6.5. Newtonian verses non-Newtonian flow

Below (Figs 5.6.5.1-5.6.5.4) are comparisons between Newtonian and non-

Newtonian flow when all the other parameters are equal. For the Newtonian flow

the viscosity is assumed constant at a value of the average of the minimum and

maximum viscosities used in the non-Newtonian model.

The visualisations below are presented in a Z=0 plane, which is the cutting plane

along the Y coordinate at the Z=0 position. As a result, flow near to the walls can

be visualised and a more comprehensive picture of the overall flow pattern can

be obtained.

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The main difference between the contours of velocity magnitude (Figures

5.6.5.1. and 5.6.5.2.(c)) is the intensity of the colours, which is higher in the non-

Newtonian model.

Figures 5.6.5.2. (a) and (b) are given to illustrate the importance of using the

correct scaling for obtaining the maximum information about the flow behaviour.

The auto scale in this case allows the available information to be visualised so as

to provide information about the regions of highest velocity magnitude, whilst

the scaled (figure 5.6.5.2. (b)) shows the velocity magnitude in the branches and

trunk but not at the critical areas where it displays black fields (at the

obstructions).

Figure 5.6.5.1. Contours of velocity magnitude (m/s) for a Newtonian flow in

Z=0 plane

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Figure 5.6.5.2.(a) Profiles of velocity magnitude (m/s) non-Newtonian auto scale

Figure 5.6.5.2.(b) Profiles of velocity magnitude (m/s) scaled for non-

Newtonian flow

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Figure 5.6.5.2.(c) Contours of velocity magnitude (m/s) for non-Newtonian

flow in Z=0 plane (same as Fig. 5.6.3.1.1.) (Velocity = 0.07m/s)

Figure 5.6.5.3. Contours of velocity (m/s) in Z=0 plane for Newtonian flow

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Figure 5.6.5.4.(a) Profiles of velocity magnitude (m/s) for non-Newtonian

flow in Z=0 plane

Figure 5.6.5.4.(b) Contours of velocity (m/s) in Z=0 plane for non-Newtonian

flow (same as Figure 5.6.2.(b) in section 6 of this chapter)

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From Figures 5.6.5.3 and 5.6.5.4 (a & b), it can be seen that the flow direction

has not changed, and the velocity intensity is similar. The differences lie in the

following areas:

• Left outer sub-branches – in the Newtonian model the dark blue zone on

the outside is thick, but on the inner (top) side it is not present at all. In

contrast, the non-Newtonian model displays a more even distribution on

the bottom and top of the sub-branch.

• In the beginning of the left branch, just before the obstruction, the low

velocity zone is larger and easier to identify in the non-Newtonian model.

At the same time, the middle (inner) wall of the Newtonian model shows

a small area of low velocity close to the branching point, which is not

present in the other model.

• Further down, examination of the left side of the main vessel in the

Newtonian model reveals an area of higher velocity behind the

obstruction, which is limited to the area closest to the thrombi, whereas in

the non-Newtonian it spreads out upwards to the right branch.

• The differences in the right branch are again the elongation of the higher

velocity area in the non-Newtonian model behind the obstruction. That

area of higher velocity has a definite upwards direction towards the point

of sub-branching in the non-Newtonian model, whereas in the Newtonian

model it ‘points’ towards the right (outer) sub-branch. Overall, low

velocities can be seen close to the wall throughout the non-Newtonian

model, possibly indicating areas of a wall slip fluid layer.

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Figure 5.6.5.5. Contours of wall shear stress (Pascal) for Newtonian flow in

Z=0 plane

Figure 5.6.5.6. Contours of wall shear stress (Pascal) for non-Newtonian flow in Z=0 plane

5.6.6. Idea for portal vein shunt

In this section the visualization of simulations were carried out using a novel

shaped shunt, designed to by-pass areas within the portal vein which are

obstructed. The inlet of the shunt is to be connected to the main portal vein,

whilst the outlets are to connect to the respective sub-branches. This shunt has

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not been manufactured and the results of the simulations have not been verified

using LDA or another technique and those would constitutes part of future work

as separate research. Neither the anastomoses upstream and downstream, nor the

bending (angle) of the shunt between the inlet and outlet have been modelled.

This modelling was done to illustrate the versatility of the model and to provide

ideas for developing shunts for patients with severe occlusions of the portal vein.

5.6.6.1. Non-Newtonian flow visualization

In the results presented in this section the following parameters have been used

to solve the non-Newtonian power law equations: pressure = 26664.478 Pascal,

velocity magnitude 0.07 m/s, density 1050 (kg/m3), viscosity range 0.0125 to

0.03 (kg/m-s). The temperature, consistency coefficient and all other parameters

used are the same as in all simulations presented in the FLUENTS models

section of this chapter. It needs to be noted that the outflow in this shunt is the

same as in the modelled vessel above, i.e. the majority of outflow is through the

right branches (Figure 5.6.6.1.1.). The flow at the inlet is fully developed. The

figures below, unless otherwise stated, are representation of the flow in Z=0

plane.

Figure 5.6.6.1.1. Contours of velocity magnitude (m/s)

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Figure 5.6.6.1.2. Contours of wall shear stress (Pascal)

Figure 5.6.6.1.3. Contours of wall shear stress (MPa)

Figure 5.6.6.1.3 above is a representation of the wall shear stress at the wall, and

shows the areas of branching as higher shear stress area, with the highest values

recorded at the right branch junction.

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The following are visualizations of the static pressure in different planes. First is

the Z=0 plane, followed by the wall and the default interior of the vessel. From

here the non-uniform behaviour of the flow and the difference between the

middle and wall of the vessels is clear.

Figure 5.6.6.1.4. Contours of static pressure

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5.6.6.2. Newtonian flow visualisation

In this section all parameters are the same as in section 5.6.6.1, except for the

viscosity, which is set at constant 0.02 (kg/m-s) and the deactivation of the power

law equations.

Figure 5.6.6.2.1. Velocity vectors coloured by velocity magnitude (m/s) in the

default interior

Figure 5.6.6.2.2. Contours of velocity magnitude (m/s) at Z=0 plane

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Figure 5.6.6.2.3. Contours of Static pressure (Pascal) in the default interior

5.7. Visualisation of LDA measurements

5.7.1. Measurements and different visualisation opportunities

For LDA measurements, the laser beam was focused at the Z=0 plane (the

middle imaginary plane which ‘splits’ the vessel into front and back equal parts).

The laser head had to moved manually to measure different points at selected

Y=0 planes, i.e. along the x-coordinate. After completing measurements on each

plane, the laser head was elevated along the y-coordinate and the measurements

along the x-coordinate were conducted for that plane. Due to the very low rate of

the measurements (on average one hour per point), the points were substantially

distributed, and measurements conducted on few planes only (i.e. those where

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differences in the flow were expected to occur according to the computer

models). The reasons for doing so were that:

• Each time the laser beam was focused, there was no absolute guarantee

that it was precisely positioned on the same plane as the one on which it

was focused earlier (resulting from the unavailability of a movable stent

to which the laser head needs to be attached and the manual positioning,

which accounts for human error)

• The water in the tank deteriorated in terms of transparency because of

dust particles and needed changing every 24 hours; and

• The formation of air bubbles inside the bioreactor as the device was not

airtight so as to allow exchange of the viscous fluid and of the vessel

model used (normal or obstructed). The bubbles needed to be removed

regularly as they scattered the light, which made it difficult to conduct the

measurements.

Following the recording of velocities in different points of both normal and

obstructed models, the files were extracted and plotted with Tecplot software.

Some of the Figures below have different vector lengths, to better show the flow

direction at the point. A smaller vector length of 300 is sufficient to provide

information on the flow in the normal vessel, but insufficient for the obstructed

vessel. Some points of reversed flow have been recorded predominantly in the

left branch, with the overall flow direction towards the right branch, the latter

being consistent with the computer simulated model.

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Figure 5.7.1.1. LDA measurements of mean velocity in the normal vessel

(without obstructions). Vector representation and contours with vector

length of 300

The zero point on the x-axis is the middle of the vessel, but the zero point on the

y-axis is few centimetres above the Y=0 of the real model. As no measurements

were carried out very close to the inlet of the vessel, it is not represented in the

LDA visualizations. The drawing of the walls is an approximation, and should be

considered as a guide only. As stated earlier, the measurements were conducted

at the Z=0 plane, cutting through the middle of the model, hence the z-axis is not

presented in these results.

In Figure 5.7.1.1, the contours of the velocity vectors are presented to give an

indication of the flow pattern, strength and direction within the measured planes

of the studied model.

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Figure 5.7.1.2. Representation of mean velocity vectors only (vector length 300) without the contours in a normal vessel (without obstructions).

Figure 5.7.1.3. Representation of the obstructed vessel with vector length of 300

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As this software package does not depend on the geometry, it represents points

only relative to their spatial position, even when there are no boundaries or grid

created. The geometry is hand-drawn and is presented for easier interpretation of

the measured results; hence the obstructions are not shown. The shape of the

vessel is relative to the space coordinates and is not identical to the computer

model.

Figure 5.7.1.4. Close up of the obstructed vessel with vector length of 300

It can be seen that the vectors are much smaller for the same vector length as the

one used in Figures 5.7.1.1. and 5.7.1.2. Also, the direction of the vectors is quite

different within the obstructed vessel. Some curving of the vectors also occurs

(see left hand side vector at y=26; the middle one at y=22) due to the multiple

measurements taken at each point (an average of 1000 particle detections at each

point). The flow in the obstructed vessel was harder to detect and measurements

took longer to conduct, showing that obstructions have a definite effect on the

viscous flow.

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Figure 5.7.1.5. A representation of rake of stream traces in a close up view of

the obstructed vessel with vector length of 300

It can be seen that the vector length of 300 is insufficient to show the vectors,

and a five-fold increase was needed in order to be able to see the direction and

magnitude of the flow. The only problem with the increase in the vector length is

that the scale vector (right hand side, parallel to the x-axis, showing the size of

velocity of 0.01m/s) also increases and in Figure 5.7.1.6, it is outside of the

visual area and cannot be used for scaling purposes. So depending on whether

information on the size or direction of velocity vectors is needed, the lengths will

need to be adjusted.

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Figure 5.7.1.6. A representation of rake of stream traces in a close up view of

the obstructed vessel with vector length of 1500

5.7.2. Comparison between visualization using different vector lengths

The following Figures represent the measurements in the normal vessel with

different vector lengths of 300 and 500. Figure 5.7.2.1 shows information on the

flow direction, with vector flow of 300. Figure 5.7.2.2., although showing the

overall flow in a clearer way, loses some of the information at points of fast flow,

i.e. at the right branches. A balance is needed between visualising sufficient

information and not losing important information.

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Figure 5.7.2.1. Normal vessel with vector length of 300 (same as Figure

5.7.1.2.)

The vector length is a ‘post-processing’ tool option, meaning that it has no

bearing on the results, it just makes it easier to visualise the flow direction and

the differences in the velocities around the vessel.

As the pointer might be outside of the area of visualization (as is the case with

the vectors in the right sub-branches in Figure 5.7.2.2. the velocity cannot be

determined), the vector length should not be too high. The faster the flow at a

point, the larger the vector and conversely, the smaller the vector, the slower the

flow. Looking at the different vectors, areas of slow and fast flow can be located.

As each point in this visualisation is an average representation of around one

thousand measured particles, it can be taken as a realistic representation of the

flow in the vessel during the experiments. This means that at each point an

average of one thousand reflecting particles have been registered.

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Figure 5.7.2.2. Normal vessel with vector length of 500

5.7.3. Comparison between normal and obstructed models

The next two Figures compare the normal and the obstructed vessels using a

vector length of 700 in both cases. Both models with vector lengths of 300 were

presented earlier (Figures 5.7.1.2 and 5.7.1.3). In the Figures below it becomes

clearer that for better representation of the flow in the obstructed model, the

vectors length needs to be substantially larger than the one needed for the normal

vessel.

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Figure 5.7.3.1 Normal model with vector length of 700

Figure 5.7.3.2. Obstructed model with vector length of 700

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5.7.4. The most appropriate vector length

The Figures presented in this chapter showed the need for use of different vector

lengths to represent the flow in the two models. A vector length of 300 was

sufficient to provide information on the flow direction and magnitude in the

normal model. For the obstructed model it was found that a vector length of 1500

was more appropriate. One needs to be mindful when increasing the vector

length that the velocity is not the same at all points, and at some points (see the

outer right sub-branch point in the obstructed model in Figures 5.7.4.2. and

5.7.4.3) the vectors can increase disproportionately to the others. This has no

implication for the accuracy of the measurements or the visualisation, and clearly

shows that the flow is not uniform. Thus, learning more about the behaviour of

the flow allows predictions to be made which can possibly lead to improvements

to the flow.

Figure 5.7.4.1. Normal model with vector length of 300

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Figure 5.7.4.2. Obstructed model with vector length of 1000

Figure 5.7.4.3. Obstructed model with vector length of 1500

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5.8. Comparison between CFD and LDA models

The next four figures represent velocities at different cross sections and heights

for both the Fluent (Figures 5.8.1.-3.) and LDA measured points (Figure 5.8.4).

Where L and R are written after the mm in the Figures below, they represent L=

left branch and R= right branch. The flow profile for the normal model had its

peak in the middle of the vessel in both the CFD and LDA measurements, but in

the experimental measurements, due to noise, human error and equipment

shortcomings there is some extra disturbance in the flow, which are not present

in the computer generated model. Similar behaviour is observed in the obstructed

model. The interesting part is the flow in the right branch in the obstructed

model, where a clear peak can be seen in both models.

The CFD model does not account for any of the errors due to the nature of the

experimental work carried out with the LDA.

256

Velocity at different heights

0

0.02

0.04

0.06

0.08

0.1

0.12

0.14

-5 -4 -3 -2 -1 0 1 2 3 4 5

Radii mm

Vel

oci

ty m

/s

at y=10mm

at y=20mmat y=32mm at y=60mm

Figure 5.8.1. CFD points from the inlet to the middle of the branching in normal vessel

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257

Velocity at different heights

0.06

0

0.01

0.02

0.03

0.04

0.05

-17 -16 -15 -14 -13 -12 -11 -10 -9 -8

Radii mm

Vel

oci

ty m

/s at y=74mmL

Velocity at different heights

0

0.02

0.04

0.06

0.08

0.1

0.12

0.14

8 9 10 11 12 13 14 15 16 17

Radii mm

Vel

oci

ty m

/s

at y=74mmR

Figure 5.8.2. CFD points in the right branch in normal vessel

Figure 5.8.3. CFD points in the left branch in normal vessel

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258

Velocity at different heights

0

0.005

0.01

0.015

0.02

0.025

0.03

0.035

-5 -4 -3 -2 -1 0 1 2 3 4 5

Radii mm

Vel

oci

ty m

/s

at y = 10 mmat y = 20 mmat y = 32 mm

Figure 5.8.4. Points measured using LDA in normal vessel

The red line showing y=32mm is at height equal to 72mm in the CFD

simulations, i.e. in the area of branching and shows twice higher velocities in the

right branch compared to the left (velocity of around 0.013 m/s in the left and

0.024 m/s in the right branches). This is consistent with the velocities simulated

in the CFD model at height of 74mm shown on Figure 5.8.2 for the right branch

measuring velocities of 0.12 m/s compared to the left branch shown on Figure

5.8.3 measuring less than 0.06 m/s.

The velocity just below from the branching is represented by the blue line of y

=20mm (add 40 mm to equal the hight in the CFD model) in Figure 5.8.4 and the

shape of the velocity profile fits well with the one represented in Figure 5.4.1 by

the dark blue line at y=60mm.

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Figure 5.8.5. Height of vessels used in LDA and CFD simulations

259

Velocity at different heights

0.00E+00

2.00E-02

4.00E-02

6.00E-02

8.00E-02

1.00E-01

1.20E-01

1.40E-01

1.60E-01

-5 -4 -3 -2 -1 0 1 2 3 4 5

Radii mm

Vel

oci

ty m

/s

9.1cm Height

of vessel

0cm

at y = 20 mmat y = 21 mmat y = 22 mmat y = 26 mmat y = 32 mmat y = 37 mmat y = 42.5 mmat y = 48 mm

Figure 5.8.6. Height points in the vessels from the CFD simulations up until just after the trunk obstruction

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Velocity at different heights

0

0.02

0.04

0.06

0.08

0.1

0.12

0.14

0.16

0.18

0.2

-7.5 -5.5 -3.5 -1.5 0.5 2.5 4.5 6.5 8.5 10.5 12.5

Radii mm

Vel

oci

ty m

/s

at y = 67 mmLat y = 67 mmRat y = 61 mm

Figure 5.8.7. Height points in the vessels from the CFD simulations at the area of branching (blue line) and just below the obstructions in the branches (red and black lines for right and left branches respectively)

Velocity at different heights

0.16

0

0.02

0.04

0.06

0.08

0.1

0.12

0.14

-20 -15 -10 -5 0 5 10 15 20

Radii mm

Vel

oci

ty m

/s

at y = 74 mmLat y = 74 mmR

Figure 5.8.8. Velocity in the Left and Right branches around obstructions for the CFD simulated model

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Velocity at different heights

0

0.0002

0.0004

0.0006

0.0008

0.001

0.0012

0.0014

0.0016

0.0018

-5 -4 -3 -2 -1 0 1 2 3 4 5

Radii mm

Vel

oci

ty m

/s at y = 20 mm

at y = 21 mmat y = 22 mmat y = 26 mmat y = 32 mm

Figure 5.8.9. LDA measured points in the obstructed model below the branching (add 20mm to compare with similar heights in the CFD model)

Velocity at different heights

0.008

-0.001

0

0.001

0.002

0.003

0.004

0.005

0.006

0.007

-21 -16 -11 -6 -1 4 9 14 19 24

Radii mm

Vel

ocit

y m

/s

at y = 43 mmat y = 47 mmat y = 51 mm

Figure 5.8.10. LDA measured points in the obstructed model in the area of branching (add 20mm to compare with similar heights in the CFD model) The velocity at height y=20 and y=22 in Figure 5.8.9 is comparable to the

velocity measured at y=20÷32 in Figure 5.8.6., both of which are below the

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262

obstruction of the vessel. The profile is parabolic and the pattern starts to change

at around y=37mm in the CFD simulations and y=26 for the LDA measurements.

The peak that can be seen in Figure 5.8.10 represented by the purple line is the

same peak as CFD simulated and shown on Figure 5.8.7 by the red line. They

show the logical increase in velocity due to the narrowing cause by the

obstruction in the branch.

There are some abnormal particle measurements due to noise and human error as

the point measured by LDA and shown by the high velocity point on the right

side of the blue line in Figure 5.8.9 at y=21mm. Similar case with the lowest

velocity in the middle of the dark blue line at y=26 of the same Figure 5.8.9.

The model obstructed vessel in the LDA measurements was attached to the

bottom ring inside the bioreactor and so the measurements height has to be

adjusted by 20mm to compare with the CFD simulations. For the normal, non-

obstructed vessel the adjustment needs to be 40mm as the first plane for

measurements was higher than in the obstructed, the later having the trunk

obstruction lower than 40mm above the fixation point for the model vessel to the

bioreactor ring.

The tables with the data on which the above 10 Figures are based are represented

in Appendix 5 of this thesis.

5.9. Conclusions

These simulations confirmed the expectation that obstructions would have an

effect on the blood flow in the portal vein in the situation of diminished blood

supply to the liver due to disease of the organ. The simulations used low flow

velocity, although increased compared to normal portal vein flow, and an

average pressure of 40 cm H2O column. The clinical condition this presentation

is based on is portal hypertension and the impact of obstructions on this

condition was examined. Future studies will need to investigate variables such as

the size and location of the obstructions and their impact on the flow to the liver

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263

under the same conditions. The thrombogenic effect of the blood in portal

hypertension with obstructions will also be investigated.

The experimental measurements are in agreement with the computer model

showing higher velocity towards the right branches and different flow in normal

and obstructed models. This computer model can aid medical practitioners in

understanding the blood flow and possibly predicting complications in patients

with portal hypertension with or without the added complications of obstructions.

The input data for this CFD model can be taken from in vivo measurements (e.g.

Duplex Ultrasound, Magnetic Resonance, echo-Doppler and Doppler Duplex

sonography) for individual patients. This model can be adjusted for a variety of

flow parameters and can assist medical practitioners, in conjunction with the

patient-based measurements, to predict the degree of risk to the patient. This type

of model may potentially be used to predict the chances of survival and the risks

of liver failure and mortality in patients with portal hypertension.

Some limitations in the measurements of the physical experiments were

discussed in section 5.7. above and need to be taking in consideration in future

studies.

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CHAPTER 6

Conclusions

In this thesis, blood flow through the portal vein of the liver in an idealised

model under portal hypertension conditions was investigated. To achieve this,

research in a variety of areas had to be carried out as outlined below.

All methods currently used or under development to deal with portal

hypertension and/or its complications have their advantages and disadvantages,

and there are examples in which they are more or less effective than other

methods. It will be beneficial and logical for all treatment methods to be

available in any medical centre undertaking hepatic surgery, so that in each

individual case the appropriate approach can be chosen. In some cases a

combination of different treatments might be the correct approach, and the search

for novel methods needs to continue. Part of the aim of the research undertaken

in this thesis was to investigate ways to deal with the diminished blood flow and

look into possible ways to either improve the flow or to predict the impact of the

condition on the outcome for the patient. There has been no attempt to propose

medication or surgical procedures to cure or improve the survival rate in patients

with cirrhosis, as no part of this research had a clinical component.

The practical application of the research undertaken in this thesis will be in the

area of tissue engineering utilising endothelial cell on biodegradable scaffolds.

As the materials used for scaffold fabrication and the manufacturing process are

very complex issues, they have been consequently converted into separate

projects and are under investigation at the time of completing the research done

for this thesis. From independent experiments carried out to investigate possible

scaffold materials and best conditions for cell seeding, it became clear that the

relationship between scaffold porosity and cell adhesion in both steady and

pulsatile flow conditions and the development of more suitable biodegradable

polymers need further investigation and research.

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The experimental component of this project involved both physical and computer

modelling. The computer model generated for this research was used to enhance

our knowledge on the features of the blood flow through the portal vein. This

model was created before manufacturing the vessel for the physical experiments,

and was used as reference in setting up the LDA measurements. The vessel used

in the physical experiments was fabricated to replicate the computer-generated

portal vein model, and the flow velocity and viscosity, as well as the pressure in

the vessel were a close approximation to the one set for the computer model.

Rheological and hemodynamic characteristics of the blood flow in healthy and

cirrhotic patients and the impact of portal hypertension on these characteristics

was combined with general theories and studies of the blood flow in the human

cardiovascular system. Comparison between assumed Newtonian behaviour of

the flow and the non-Newtonian realistic representation of blood flow were

given.

The physical model closely replicated the computer created model, and the

experiments were done mainly to verify the validity of the computer simulations.

Apart from velocity, no other measurements were carried in the LDA phase of

this work. The vessel used in those measurements was fabricated based on the

size and shape of the computer model, and the fluid used had the same viscosity

as the one set in the FLUENT model. The same velocity was achieved and

measurements for the normal and the obstructed models were carried out. Some

problems were identified during the physical experiments as either sources of

error or inaccurate representation of the physiological or in vitro tissue

engineering conditions and these are discussed below. The physical experiment

was reasonably easy to perform and repeat, and the cost of all components

(excluding the Laser itself, but including the pulsatile pump) is under AUD 1000.

If the same measurements need to be performed for individual patient portal vein

geometry, only the vessel model would need to be replaced and some

modifications to the bioreactor carried out, but the cost of those would not

exceed AUD 200.

For the purposes of both the physical measurements and the tissue culturing

components of this work (the latter being the basis for future research) a novel

design bioreactor was developed.

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The simplified design of the bioreactor has a small number of parts allowing for

easy assembling of the device by non-experts – total time for assembling and

disassembling can be less than 10 minutes (including the tubing and reservoirs).

The materials used (glass, medical grade stainless steel and silicone tubing) can

be sterilised by commonly used methods, including autoclaving, thus providing

safe and easy accessible work conditions for tissue engineering. One of the main

problems in tissue engineering is the sterility of the materials used and this

concern has been addressed as part of the bioreactor design. The next

requirement is for compatibility so the device can be incubated, which has also

been taken into account with this design, as it allows for the bioreactor together

with all tubing and reservoirs to fit into commercially available incubators.

The device can be easily modified to accommodate vessels of different size,

diameter and branching geometry, by simply exchanging the top cylinder to

which the scaffold is attached.

The maximum cost to manufacture the bioreactor, including labour costs, is

AUD 500. This cost will be lower if a larger quantity is manufactured. The

bioreactor can be easily decontaminated, washed and re-used as required.

The design allows for control of the flow conditions and media mixture

(including media exchange). There are no moving parts within the bioreactor,

hence there is no need for externally generated momentum to keep the system

working.

The durability of the medical grade stainless steel parts have been tested by being

left in a glycerol solution for over two weeks without any indication of rusting.

Nevertheless, there are several areas, as outlined in the next section on future

work, which need to be investigated further and could lead to improved

performance of the apparatus.

The computer modelling and simulations presented in Chapter 5 confirmed the

expectation that obstructions would have an effect on the blood flow in the portal

vein in the situation of diminished blood supply to the liver due to disease of the

organ. The clinical condition this presentation is based on is portal hypertension

and the impact of obstructions on this condition was examined.

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The visualisation opportunities using FLUENT software were given for

illustration purposes and are not restrictive to the visualisation of other

parameters. Those include such flow parameters as velocity vectors and

magnitude, static pressure, wall shear stress and stain rate, as well as

combinations of these parameters in different parts of the vessel and histograms

of velocity distribution or a visual representation of the static pressure for each

point inside the vessel.

Comparisons of the flow between the obstructed and normal vessels showed

significant differences due to the obstructions, as both simulations were

performed using the same flow parameters and operational and boundary

conditions. These differences were also observed when the same parameters

were used under Newtonian or non-Newtonian conditions or when different flow

velocities were simulated.

In the simulations where the fluid was set as a multiphase flow, comprising of

plasma, erythrocytes, leukocytes and platelets, a very distinct pattern between the

flows of the phases was seen. This visualisation can be very useful in individual

cases, as it shows that the blood will have a different behaviour depending on the

percentage and size of the various blood components. Thus, in patients with low

erythrocyte counts the flow will behave differently than in patients with normal

or high counts of those particles. This can possibly help explain the flow

disturbance in patients with blood disorders.

The experimental measurements were in agreement with the computer model

showing higher velocity towards the right branches and different flow in normal

and obstructed models. This model can aid medical practitioners in

understanding the blood flow and possibly predicting complications in patients

with portal hypertension with or without the added complications of obstructions.

The input data for this CFD model can be taken from in vivo measurements for

each individual patient. This model can be adjusted for a variety of flow

parameters and could assist medical practitioners, in conjunction with the

patient-based measurements, to predict the degree of risk to the patient. This type

of model, after clinical validation, may potentially be used to predict the chances

of survival and the risks of liver failure and mortality in patients with portal

hypertension.

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Future work The research carried out in this thesis revealed some areas for future work and

improvements, all of which can assist in either deepening our understanding or

discovering new ways to solve specific problems. Below are some of the most

significant areas for future work identified in this thesis.

For the purpose of maintaining the viscosity of the fluid in the bioreactor during

LDA flow measurements, heating options need to be investigated for either the

viscous fluid or the water in the tank. Heating plates around the tank, a separate

heating chamber for the blood-like solution or alternative methods need to be

explored to resolve this problem. For the purpose of tissue engineering, the

growth medium can be heated by covering the silicone tubes with a warming

jacket, or simply placing the whole system into an incubator (if there is no need

of constant monitoring). The bioreactor and its tubing and reservoirs developed

in this work can be safely placed inside commercially available incubators.

In the present study the model blood vessel was made of glass to allow for a high

degree of transparency, but the limitations of this material are its stiffness and

lack of flexibility, both of which do not correctly represent the native vessel or

the ideal scaffold. However, the same properties were assigned to the computer

model to allow for verification of the results. Alternative materials, with similar

transparency but also with a reasonable degree of flexibility, need to be

developed for LDA measurements. It is worth remembering that transparency is

not an issue for biodegradable scaffolds used for tissue engineering, as the cells

growing on the material will not permit LDA measurements.

In this thesis the changing behaviour of blood has not been taken into account,

but this needs to be considered for future research. It is important to individualise

each model to represent the specific changes occurring in patients’ blood flow so

realistic modelling can be done. A better understanding of the blood flow pattern

using modelling and visualization may help to minimize the thrombogenesis of

artificial blood vessels and organs. The importance of the deformation

characteristics of blood cells on the flow has been demonstrated in many studies

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over the last three decades and can be implemented in the model developed in

our research if required.

To improve the bioreactor design, tests with different angles of the inlets (if

shunts are considered) need to be carried out to determine the best one from a

hemodynamic point of view. Different joining angles between the lower and

perfusion chambers of the bioreactor and their effect on the flow need to be

studied to determine the most suitable one. Creating a screw lid for the

inlet/outlet of the bioreactor’s lid will allow for better sealing. Silicone sealant

can be used on the outer surface of the connection between the body of the

bioreactor and the lid to prevent leaks after the system has been sterilized and

assembled.

A pulsatile pump can be introduced to the system while the bioreactor is inside

the incubator using the linking outlets most incubators have (so the pump stays

outside the incubator). Alternatively, a new pulsatile pump needs to be designed,

which can operate safely in an environment that is warmer and more humid than

room temperature.

Computational Fluid Dynamics studies using the models developed in this thesis

should include an investigation of variables such as the size and location of the

obstructions and their impact on the flow to the liver under the same conditions.

The thrombogenic effect of the blood in portal hypertension with obstructions

will also need to be investigated. Multiphase flow clinical studies of the impact

of the concentration of blood cell types on the behaviour of the flow and whether

they have consequences to the patients’ survival should also be considered.

Other areas that could be investigated to better improve the utility of the

bioreactor in tissue engineering applications include:

• The development of biodegradable porous materials, which do not release

any toxic particles when degrading in tissue culturing conditions and are

strong enough and suitable for grafting of blood vessels.

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• Testing of different cell seeding methods to find the appropriate ones for

the chosen scaffolding material.

As can be seen from the list above, there are various areas in which further

research can be done following the work conducted in this thesis. Each topic

requires specialists in that area to conduct the investigations and as all require

extensive research that is beyond the scope of the current study.

Finally, due to the wide variation in the structure, function and pathology of

patients, portal vein and blood flow, each computer model needs to take into

account the clinically measured parameters (derived from imaging), the patient

disease history, and other conditions the individual might suffer from (i.e. kidney

failure, elevated blood pressure, etc.). Computer modelling therefore has to be

carried out on a case-by-case basis with regards to each patient. Until a system is

developed that allows rapid modelling (within minutes) while still being based

on the individual patient, computer models cannot be used for emergency

procedures. With the development of new software, the possibility of changing

the model by simply changing the input parameters may arise. So far, and from

our experience, the simulation requires re-drawing of the grid and mesh for each

case, which is in essence the most time-consuming part of the modelling process.

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References Absolom, D R, Hawthorn, L A & Chang, G 1988, 'Endothelialization of polymer

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Appendix 1 MIXTURE MODEL – FOUR PHASES

Material: blood-alike (fluid)

Property Units Method Value(s) ---------------------------------------------------------------------------------------------- Density (kg/m3) constant 1070 Cp (Specific Heat) (j/kg-k) constant 4182 Thermal Conductivity (w/m-k) constant 0.6 Viscosity (kg/m-s) non-Newtonian (0.2073 0.4851 310

-power-law 0.00125 0.003) Molecular Weight (kg/kgmol) constant 18.0152 Standard State Enthalpy (j/kgmol) constant 0 Reference Temperature (k) constant 298.15 FLUENT Version: 3d, segregated, mixture, lam (3D, segregated, Mixture, laminar) Release: 6.1.22 Model Settings ------------------------------------- Space 3D Time Steady Viscous Laminar Heat Transfer Enabled Solidification and Melting Disabled Radiation None Species Transport Disabled Coupled Dispersed Phase Disabled Pollutants Disabled Soot Disabled

Boundary Conditions Zones Name ID Type -------------------------------------- fluid 2 fluid wall 3 wall outlet4 4 outflow outlet3 5 outflow outlet2 6 outflow outlet1 7 outflow inlet 8 velocity-inlet default-interior 10 interior

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Boundary Conditions of Fluid

Condition Value ------------------------------------------------------------------------------------- Material Name blood-alike Specify source terms? no Source Terms ((x-momentum (inactive . #f) (constant . 0)

(profile )) (y-momentum (inactive . #f) (constant . 0) (profile )) (z-momentum (inactive . #f) (constant . 0) (profile )) (energy (inactive . #f) (constant . 0) (profile )))

Specify fixed values? no Local Coordinate System for Fixed Velocities no Fixed Values ((x-velocity (inactive . #f) (constant . 0) (profile ))

(y-velocity (inactive . #f) (constant . 0) (profile )) (z-velocity (inactive . #f) (constant . 0) (profile )) (temperature (inactive . #f) (constant .0) (profile)))

Motion Type 0 X-Velocity Of Zone 0 Y-Velocity Of Zone 0 Z-Velocity Of Zone 0 Rotation speed 0 X-Origin of Rotation-Axis 0 Y-Origin of Rotation-Axis 0 Z-Origin of Rotation-Axis 0 X-Component of Rotation-Axis 0 Y-Component of Rotation-Axis 0 Z-Component of Rotation-Axis 1 Deactivated Thread no Porous zone? no Porosity 1 Solid Material Name aluminum

Boundary conditions at the Wall

Condition Value ------------------------------------------------------------------------------------ Wall Thickness 0 Heat Generation Rate 0 Material Name aluminum Thermal BC Type 1 Temperature 300 Heat Flux 0 Convective Heat Transfer Coefficient 0 Free Stream Temperature 300 Enable shell conduction? no Wall Motion 0 Shear Boundary Condition 0 Define wall motion relative to adjacent cell zone? yes

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Apply a rotational velocity to this wall? no Velocity Magnitude 0 X-Component of Wall Translation 1 Y-Component of Wall Translation 0 Z-Component of Wall Translation 0 Define wall velocity components? no X-Component of Wall Translation 0 Y-Component of Wall Translation 0 Z-Component of Wall Translation 0 External Emissivity 1 External Radiation Temperature 300 Rotation Speed 0 X-Position of Rotation-Axis Origin 0 Y-Position of Rotation-Axis Origin 0 Z-Position of Rotation-Axis Origin 0 X-Component of Rotation-Axis Direction 0 Y-Component of Rotation-Axis Direction 0 Z-Component of Rotation-Axis Direction 1 X-component of shear stress 0 Y-component of shear stress 0 Z-component of shear stress 0 Surface tension gradient 0 Outlet4 Condition Value --------------------------- Flow rate weighting 0.35 Outlet3 Condition Value --------------------------- Flow rate weighting 0.35 Outlet2 Condition Value --------------------------- Flow rate weighting 0.15 Outlet1 Condition Value --------------------------- Flow rate weighting 0.15 Inlet Condition Value ------------------------------------------- Temperature 310 Is zone used in mixing-plane model? no

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Default-interior Condition Value Material Properties

Material: blood_cells_third (fluid) Property Units Method Value(s) --------------------------------------------------------------------------------------------------- Density kg/m3 constant 2500 Cp (Specific Heat) j/kg-k constant 4182 Thermal Conductivity w/m-k constant 0.60000002 Viscosity kg/m-s non-Newtonian-power-law (0.2073 0.4851 310

0.00125 0.003) Molecular Weight kg/kgmol constant 18.0152 Standard State Enthalpy j/kgmol constant 0 Reference Temperature k constant 298.14999 L-J Characteristic Length angstrom constant 3.711 L-J Energy Parameter k constant 78.6 Thermal Expansion Coefficient 1/k constant 0 Degrees of Freedom constant 0

Material: blood_cells_second (fluid)

Property Units Method Value(s) ---------------------------------------------------------------------------------------------- Density kg/m3 constant 2050 Cp (Specific Heat) j/kg-k constant 4182 Thermal Conductivity w/m-k constant 0.60000002 Viscosity kg/m-s non-Newtonian-power-law (0.2073 0.4851 310

0.00125 0.003) Molecular Weight kg/kgmol constant 18.0152 Standard State Enthalpy j/kgmol constant 0 Reference Temperature k constant 298.14999 L-J Characteristic Length angstrom constant 3.711 L-J Energy Parameter k constant 78.6 Thermal Expansion Coefficient 1/k constant 0 Degrees of Freedom constant 0

Material: blood_cells_first (fluid) Property Units Method Value(s) ------------------------------------------------------------------------------------------------- Density kg/m3 constant 2000 Cp (Specific Heat) j/kg-k constant 4182 Thermal Conductivity w/m-k constant 0.60000002 Viscosity kg/m-s non-Newtonian-power-law (0.2073 0.4851 310

0.00125 0.003 ) Molecular Weight kg/kgmol constant 18.0152 Standard State Enthalpy j/kgmol constant 0 Reference Temperature k constant 298.14999 L-J Characteristic Length angstrom constant 3.711 L-J Energy Parameter k constant 78.6 Thermal Expansion Coefficient 1/k constant 0 Degrees of Freedom constant 0

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Material: plasma_blood (fluid)

Property Units Method Value(s) ------------------------------------------------------------------- Density kg/m3 constant 1010 Cp (Specific Heat) j/kg-k constant 4182 Thermal Conductivity w/m-k constant 0.60000002 Viscosity kg/m-s constant 1.7894001e-05 Molecular Weight kg/kgmol constant 18.0152 Standard State Enthalpy j/kgmol constant 0 Reference Temperature k constant 298.14999 L-J Characteristic Length angstrom constant 3.711 L-J Energy Parameter k constant 78.6 Thermal Expansion Coefficient 1/k constant 0 Degrees of Freedom constant 0

Material: aluminum (solid)

Property Units Method Value(s) ---------------------------------------------------------------------------------------- Density kg/m3 constant 2719 Cp (Specific Heat) j/kg-k constant 871 Thermal Conductivity w/m-k constant 202.4

Material: air (fluid)

Property Units Method Value(s) ---------------------------------------------------------------------------------------- Density kg/m3 constant 1.225 Cp (Specific Heat) j/kg-k constant 1006.43 Thermal Conductivity w/m-k constant 0.0242 Viscosity kg/m-s constant 1.7894e-05 Molecular Weight kg/kgmol constant 28.966 Standard State Enthalpy j/kgmol constant 0 Reference Temperature k constant 298.15 L-J Characteristic Length angstrom constant 3.711 L-J Energy Parameter k constant 78.6 Thermal Expansion Coefficient 1/k constant 0 Degrees of Freedom constant 0

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Contours of Static Pressure (Pascal) for the mixture

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The scales used for all velocity visualisations are identical to show the differences between the phases

Velocity Vectors Coloured by Velocity Magnitude (m/s) of the mixture

Phase 1 plasma Velocity Coloured by Velocity Magnitude (m/s) in the mixture

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Phase 2 erythrocytes Coloured by Velocity Magnitude (m/s) in the mixture

Phase 3 Leukocytes Velocity Coloured by Velocity Magnitude (m/s) in the mixture

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Phase 4 Platelets Coloured by Velocity Magnitude (m/s) in the mixture VELOCITY/VELOCITY MAGNITUDE HISTOGRAM MIXTURE 0 cells below 0.0011 (0 %) 3603 cells between 0.0011 and 0.021 (6.57 %) 9954 cells between 0.021 and 0.041 (18.17 %) 10240 cells between 0.041 and 0.061 (18.69 %) 10846 cells between 0.061 and 0.081 (19.8 %) 10716 cells between 0.081 and 0.10 (19.56 %) 6157 cells between 0.10 and 0.121 (11.24 %) 2042 cells between 0.12 and 0.14 (3.7 %) 680 cells between 0.14 and 0.16 (1.24 %) 426 cells between 0.16 and 0.18 (0.777 %) 117 cells between 0.18 and 0.20 (0.21 %) 1 cells above 0.201 (0.0018 %) PLASMA 0 cells below 0 (0 %) 3401 cells between 0 and 0.02 (6.2 %) 9705 cells between 0.02 and 0.04 (17.7 %) 10397 cells between 0.04 and 0.06 (18.97 %) 10699 cells between 0.06 and 0.08 (19.5 %) 11011 cells between 0.08 and 0.1 (20.1 %) 6480 cells between 0.1 and 0.12 (11.8 %) 1873 cells between 0.12 and 0.14 (3.4 %) 667 cells between 0.14 and 0.16 (1.2 %) 425 cells between 0.16 and 0.18 (0.77 %) 123 cells between 0.18 and 0.2 (0.22 %) 1 cells above 0.2 (0.0018 %)

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ERYTROCYTES 0 cells below 0 (0 %) 3315 cells between 0 and 0.02 (6.05 %) 9780 cells between 0.02 and 0.04 (17.8 %) 10392 cells between 0.04 and 0.06 (18.97 %) 10699 cells between 0.06 and 0.08 (19.5 %) 11010 cells between 0.08 and 0.1 (20.1 %) 6489 cells between 0.1 and 0.12 (11.8 %) 1889 cells between 0.12 and 0.14 (3.45 %) 663 cells between 0.14 and 0.16 (1.2 %) 423 cells between 0.16 and 0.18 (0.77 %) 121 cells between 0.18 and 0.2 (0.22 %) 1 cells above 0.2 (0.0018 %) LEUKOCYTES 0 cells below 0 (0 %) 18997 cells between 0 and 0.015 (34.67 %) 3004 cells between 0.015 and 0.0316 (5.5 %) 4095 cells between 0.0316 and 0.047 (7.47 %) 5527 cells between 0.047 and 0.063 (10.09 %) 6452 cells between 0.063 and 0.079 (11.77 %) 5578 cells between 0.079 and 0.095 (10.18 %) 5926 cells between 0.095 and 0.11 (10.8 %) 3910 cells between 0.11 and 0.126 (7.1 %) 1193 cells between 0.126 and 0.14 (2.17 %) 99 cells between 0.14 and 0.158 (0.18 %) 1 cells above 0.158 (0.0018 %) PLATELETS 0 cells below 0 (0 %) 3305 cells between 0 and 0.02 (6.03 %) 9735 cells between 0.02 and 0.04 (17.77 %) 10456 cells between 0.04 and 0.06 (19.08 %) 10689 cells between 0.06 and 0.08 (19.5 %) 11044 cells between 0.08 and 0.1 (20.16 %) 6472 cells between 0.1 and 0.12 (11.8 %) 1865 cells between 0.12 and 0.14 (3.4 %) 666 cells between 0.14 and 0.16 (1.2 %) 426 cells between 0.16 and 0.18 (0.78 %) 123 cells between 0.18 and 0.2 (0.22 %) 1 cells above 0.2 (0.0018 %) Blood-alike (mixture) Density kg/m3 = 1070 Plasma Density =1010, constant viscosity Erythrocytes Density=2000 Leukocytes Density=2050 Platelets Density=2500 All cells are described via non-Newtonian power law

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Appendix 2

This appendix contains the technical drawings used for the manufacturing of the

Bioreactor and some photographic images not included in the body of this thesis.

Figures 1-4 drawn by Peter Robb, Engineering workshop at Swinburne University of

technology, based on the design provided by the author of this thesis.

Figure 1 Lower ring (outside) (size is accurate if the image is enlarged to fit

properly into A4 size paper)

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Figure 2 Upper ring

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Figure 3 Inner hub (cylinder) with holes

Figure 4 Inner hub (cylinder)

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Figure 5 Inner cylinder used in the bioreactor

Figure 6 Inner hub attaching holes view with one spike

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Figure 7 Both outer rings - lower in front, upper in the back

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Figure 8 Both rings assembled bottom view

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Appendix 3

Bioreactor glass sections

Figure 1Smooth angle of fluid inlet

Figure 2 Lid rough area to connect to the body andf prevent slipping

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Appendix 4

If needed, each particle in each phase can be tracked separately, and below is an example of five different particle streams, all of which are leukocytes.

Figure 6.6.3.5. Single particle stream ID 1

Figure 6.6.3.6. Single particle stream ID 5

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Figure 6.6.3.7. Single particle stream ID 7

Figure 6.6.3.8. Single particle stream ID 10

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Figure 6.6.3.9. Single particle stream ID 31

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Appendix 5

Normal Geometry points measured by LDA 10 20

run Ch1 Vel

Mean Point X Y Vel (m/s)

X Vel (m/s)

Mean Velocity

Point

Y Vel (m/s)

X Vel (m/s)

Mean Velocity

5 -

0.00278 9 -3 0.0117 0.000652 0.01176 19 -

0.00189 0.00037 0.001929 4 0.0011 7 -2 0.02358 0.000556 0.023589 17 0.00983 0.00078 0.009869 1 0.0314 1 0 0.03147 0.001688 0.03152 11 0.02877 0.00077 0.028785 2 0.00168 3 2 0.00985 0.0011 0.00991 13 0.0203 0.0010 0.020337 3 0.0098 5 3 -0.002 -0.016 0.01677 15 0.0099 0.0008 0.009945

10 0.0006 9 0.0117 6 -0.016 7 0.023 8 0.0005

15 0.0099 14 0.0010 11 0.0287 12 0.0007 13 0.0203 21 0.0086 20 0.0003 19 -0.0018 16 0.0008 17 0.0098 18 0.0007

32 52

Mean Velocity Point

Y Vel (m/s)

X Vel (m/s)

Mean Velocity Point

X points

Y Vel (m/s) X Vel (m/s)

Mean Velocity

0.00192 29 0.01040 0.00187 0.01057 41 -17 0.00066 0.00816 0.0082 0.00987 27 0.01206 0.0039 0.01268 39 -14 -0.0128 0.00178 0.013 0.02878 21 0.0086 0.0083 0.0120 37 -11 -0.025 0.00527 0.025

0.0203 23 0.0215 0.009 0.0234 31 11 0.0024 0.0022 0.0032 0.00994 25 0.0216 0.0083 0.023 33 14 0.029 0.0140 0.0323

35 17 0.020 3.42E-05 0.0200

Table 1 LDA measured points Normal geometry

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Points measured with LDA in obstructed model

point X Y Z X mean velocity Y mean velocity Mean Velocity

5 -3 3 0 -0.000793489 2.75E-05 0.000793965 1 0 3 0 -0.00144936 6.12E-05 0.001450651 3 3 3 0 -0.000675162 7.57E-05 0.000679396

11 -2 4 0 0.000101825 0.00094458 0.000950052 7 0 4 0 -0.000975743 0.000609822 0.001150633 9 3 4 0 -0.000547796 0.00156395 0.001657112

17 -4 5 0 -0.000268072 0.000702149 0.000751582 13 0 5 0 -0.00106129 0.000273288 0.001095912 15 4 5 0 -0.000551111 0.000180593 0.000579946 23 -1 9 0 -0.00131735 0.000310778 0.001353512 19 0 9 0 0.000344948 0.000177235 0.000387816 21 3 9 0 -0.000471501 0.000434746 0.00064134 25 0 15 0 -0.000840722 0.000671132 0.001075747 27 3 15 0 -0.000554916 0.000367572 0.000665613 29 4 15 0 -0.000619239 -0.000164478 0.000640711 41 -13 26 0 0.000487787 -0.0007378 0.000884469 39 -9 26 0 -0.000573224 0.000313359 0.000653284 37 -5 26 0 -0.000679411 2.11E-05 0.000679738 31 5 26 0 -0.00051563 -1.80E-05 0.000515945 33 7 26 0 -0.000293929 3.37E-05 0.00029585 35 9 26 0 -0.000603702 -0.00156045 0.001673159

53 -

20.5 30 0 -0.000137471 0.000276492 0.000308782

51 -

14.5 30 0 0.000595904 0.00E+00 0.000595904

49 -

10.5 30 0 -0.000378472 -0.000546754 0.000664967 43 11.5 30 0 -0.000282733 4.69E-05 0.000286593 45 15.5 30 0 0.00604625 0.00403746 0.007270366 47 19.5 30 0 -0.00095815 -0.000314298 0.001008382 61 -21 34 0 -0.00061384 0.000167746 0.000636348 59 -19 34 0 -0.000495811 -0.00036324 0.000614631 57 -10 34 0 -0.000723606 0.000291316 0.000780045 55 -8 34 0 -0.000130783 0.000273278 0.00030296 63 10 34 0 0.000577789 -0.00120348 0.001334992 65 14 34 0 -0.000109826 -6.15E-05 0.000125875 67 26 34 0 0.00147434 5.80E-06 0.001474351 69 12 43 0 -0.000343138 0.000316319 0.000466692 71 10 43 0 -0.000535447 0.000388657 0.000661633

Table 2 LDA measured in obstructed model

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y=10mm y=20mm y=32mm y=60mm y=75mm Radii Velocity Radii Velocity Radii Velocity Radii Velocity Radii Velocity

-5 0.000463 -5 0.000447 -5 0.000418 -5 0.001543 -17 0.018009 -4 0.053382 -4 0.050152 -4 0.049199 -4 0.023506 -15.5 0.039071 -3 0.086575 -3 0.085546 -3 0.085013 -3 0.046672 -14 0.05087 -2 0.105447 -2 0.110145 -2 0.111286 -2 0.070364 -12.5 0.05683 -1 0.113623 -1 0.123493 -1 0.126552 -1 0.087567 -11 0.056974 0 0.115575 0 0.12726 0 0.131072 0 0.102868 -9.5 0.049796 1 0.112838 1 0.122511 1 0.125554 1 0.114841 -8 0.025123 2 0.102658 2 0.107363 2 0.10879 2 0.115179 8 0.062681 3 0.080845 3 0.080161 3 0.080005 3 0.097294 9.5 0.105131 4 0.046309 4 0.043387 4 0.042674 4 0.059312 11 0.123706 5 0.000359 5 0.00034 5 0.00034 5 0.00461 12.5 0.126592

14 0.113425 15.5 0.092408 17 0.036115

Table 3 Normal geometry CFD simulation points

20 21 22 26 32 37 Radii

Velocity

Radii

Velocity

Radii

Velocity

Radii

Velocity

Radii

Velocity

Radii

Velocity

-5 3.97E-05

-5 4.37E-05

-5 0.00026

-5 0.000998

-5 0.000374

-5 0.000752

-4 0.054544

-4 0.054679

-4 0.055173

-4 0.051803

-4 0.057485

-4 0.063589

-3 0.084409

-3 0.083001

-3 0.085158

-3 0.084283

-3 0.086618

-3 0.094256

-2 0.098176

-2 0.098395

-2 0.097738

-2 0.100241

-2 0.10149

-2 0.10698

-1 0.10412

-1 0.105478

-1 0.106293

-1 0.107055

-1 0.108115

-1 0.112791

0 0.106575

0 0.107422

0 0.107748

0 0.108902

0 0.109864

0 0.111843

1 0.10502

1 0.105692

1 0.105717

1 0.106664

1 0.1069 1 0.103872

2 0.098064

2 0.09843

2 0.098738

2 0.09922

2 0.098051

2 0.086476

3 0.084796

3 0.084192

3 0.082868

3 0.081547

3 0.080043

3 0.062689

4 0.054229

4 0.055257

4 0.055642

4 0.054799

4 0.050515

4 0.031791

5 0.000576

5 0.001163

5 0.000589

5 0.000504

5 6.79E-05

5 0.000212

Table 4a CFD points for obstructed geometry

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42.5 48 61 67 74 Radii Velocity Radii Velocity Radii Velocity Radii Velocity Radii Velocity

-5 0.00063 -5 0.00084 -7.5 0.0016 -6.5 0.044 -16.5 0.003 -4 0.083 -4 0.07307 -6 0.0153 -5.5 0.064 -15.5 0.0198 -3 0.110 -3 0.114 -4.5 0.042 -4.5 0.0689 -13 0.041 -2 0.126 -2 0.127 -3 0.069 2.5 0.0196 -11.5 0.053 -1 0.134 -1 0.13 0 0.0946 3.5 0.064 -10 0.062 0 0.127 0 0.124 1.5 0.084 8.5 0.090 -8.5 0.0577 1 0.018 1 0.0998 3 0.10 9.5 0.187 -7 0.030

2 0.061 4.5 0.10 10.5 0.157 7 0.00015 3 0.029 6 0.089 11.5 0.0268 8 0.037 4 0.007 7.5 0.048 10 0.098 5 0 11.5 0.143 12.5 0.15 13.5 0.146 14.5 0.11 15.5 0.068 16.5 0.011

Table 4b CFD points for obstructed geometry

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Page 348: Investigation of portal vein blood flow in cirrhotic …...I, Svetla Bogomilova Petkova, declare that this thesis: Contains no material which has been accepted for the award to the

Publications resulting from this research 1. Petkova, S, Hossain, A, Naser, J & Palombo, E 2003, 'CFD modelling of blood flow in the portal vein hypertension with and without thrombosis' Third International Conference on CFD in the minerals and Process Industries, CSIRO, Melbourne, Australia, 10-12 Dec 2003, 527-530 2. Morsi, Y, Das, S & Petkova, S 2001, ‘Analysis of flow field in a T-bifurcation method’ In the proceeding of the first Asian-Pacific Congress on Computational Mechanics, Sydney, Australia, 20-23 Nov 2001

In process of reviewing 1. Petkova, S, Hossain, A, Naser, J & Palombo, E, ‘Particle tracking of blood cells using FLUENT’ 2. Petkova, S, Palombo, E & Robb, P, ‘Simple Versatile Easy Tissue-culture in the Laboratory Apparatus: Bioreactor for blood vessel growth in vitro’

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