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Navigating protein production from early-stage discovery research through therapeutic manufacturing is faced with a variety of challenges such as, low-titer transient productivity, lack of scalability, required re-validation upon switching expression systems, and the extended time for stable cell generation. These challenges are magnified when developing difficult-to-express proteins like ADCs, bi-specifics and other novel formats. This poster presents data discussing strategies and their implementation for overcoming these challenges using a unifying, high-performance cell engineering technology. This will include means to boost transient and/or stable pool productivity through improved titers, the ability to delay stable expression using scalable transfection, the use of the manufacturing CHO cell line for early-stage development, as well as ways to significantly shorten stable cell line generation. Summary MaxCyte’s Flow Electroporation ® Technology provides for high efficiency, high viability transfection of a variety of CHO cell lines, including CHO-S, CHOZN, and custom CHO cell lines. This enables development through commercial production in a single host cell background and eliminates mid-development revalidation studies due to host cell switching. MaxCyte high efficiency, high viability transfection enables: complete flexibility of post transfection culture conditions enabling laboratories to run full optimization studies to reach their quantity, quality, cost and timeline goals using transient expression; high seed densities post electroporation while maintaining high antibody expression and product quality, thereby improving laboratory productivity; rapid application of selection pressure for generation of high-producing CHO K1 GS-/- stable pool banks (>2 g/L hIgG1 within 6-7 weeks of electroporation) or custom CHO stable cell lines (2-3 months) MaxCyte scalability supports a parallel protein production approach that rapidly generate relevant data via production of grams of protein transiently while simultaneously generating stable pools and cell lines to streamline clinical translation and commercialization. Abstract Overcoming Transient & Stable Productivity Challenges to Efficiently Scale Protein Production from Early Discovery Through Clinical Translation. Weili Wang, Joseph Abad, and James Brady. MaxCyte, Gaithersburg, MD, USA Corresponding Author: James Brady; [email protected] MaxCyte, Inc., Tel: (301) 944-1700 [email protected], www.maxcyte.com Flow Electroporation, MaxCyte, ExPERT and MaxCyte STX are trademarks of MaxCyte, Inc . CHOZN is a registered trademark of Merck KGaA. FectoPRO is a registered trademark of Polyplus-transfection ® SA. Figure 5: Stable Cell Line Generation in <3 Months. A). CHO MGAT1- cells were electroporated and stable cell lines generated using the ClonePix2. B). 44 clones were picked based upon clone fluorescence intensity. C). rgp120 was purified and quantified from top 6 producers. D). Purified rgp120 was assessed for binding to 3 different broadly neutralizing antibodies and compared to binding profile of rgp120 produced transiently from either CHO GMAT1- cells or from original CHO-S cells. Low to no binding of neutralizing antibodies to rgp120 produced by CHO-S, with higher binding to rgp120 produced by CHO-MGAT1- cells which produce rgp120 enriched for high mannose sugar residues. PLoS Biol, 13(8): e0197656; 2018. Case Study #4 – Improving HIV Vaccine Efficacy & Manufacturing Parallel Transient Production & Stable Cell Line Generation Using MaxCyte Scalability B. Top Clones Identified by ClonePix2 C. 100-200x Productivity Increase Over Previous CHO-S Stable Cell Lines rpg120 MGAT1 - CHO (stable clone 5F) rpg120 MGAT1 - CHO (transient) rpg120 CHO-S (transient) isotype control mAb no plateau PG9 (V1/V2 Domain) PGT128 (V3 Domain) 10-1074 (V3 Domain) Figure 3: Bulk Stable Pool Generation and Production Runs in ~ 6 Weeks Reaching Titers >2 g/L. CHO K1 glutamine synthetase null cells from Horizon were electroporated with a plasmid encoding a human IgG1 and GS at 3 μg/10 6 cells. Cells electroporated without DNA were used as a negative control. A). Media lacking glutamine (-Gln) with or without methionine sulfoximine (MSX) were added to transfected cells at Day 2 post electroporation to begin selection. Cell viability was assessed throughout the 16-day culture period. Cells transfected with hIgG1 plasmid could be recovered in –Gln media, but not under dual selection indicating this cell line is more sensitive to selection than other CHO lines. Cells electroporated with no DNA showed very low viability and could not be recovered. B). Production runs of bulk stable pools using three different culture media were run. Cell viability and IgG titers were measured throughout the 25-dayek culture. Screening of base medium was needed to identify optimum growth conditions and IgG production. Using optimal conditions bulk pool titers were >1 g/L by day 14 and >2 g/L on day 25. Case Study #3 – Generation of High-Producing CHO K1 GS-/- Stable Pools Stable Pool Generation, Banking & Production Run Optimization in ~6 Weeks Yielding Titers >2 g/L Titer (mg/L) Elapsed Days Days Post Electroporation % Viability No DNA (-Gln) No DNA (-Gln / 25uM MSX) MAb (-Gln) MAb (-Gln / 25uM MSX) Start Selection Day 2 B. A. Elapsed Days % Viability Elapsed Days VCD (x10E6 cells/mL) Selection & Stable Bulk Pool Generation 3-4 weeks 3 weeks Expansion & Banking Production MaxCyte STX Electroporation Banked Stable Pools Capable of >2 g/L MAb Production Figure 1: Full Process Optimization in CHO Cell Line of Choice for Titer Improvements. CHO-K1 or CHO-S cells were transfected with a human IgG plasmid via a single large-scale electroporation using the MaxCyte STX or FectoPRO transfection. Transfected CHO cells were cultured in 4 different media (CHO-S and CHO-K1) and three different vessel:culture ratios (CHO-S only). Temperature was shifted to 32°C and 1mM sodium butyrate (HDAC inhibitor) added 24 hours post transfection. A). Significant effects of media/feed on IgG titers at the time of harvest for CHO-K1 transfected cells. B). Antibody titers at the time of harvest were >6x higher for CHO-K1 cells transfected via MaxCyte electroporation compared to client’s established FectoPRO method. MaxCyte-transfected CHO-S cultures produced roughly 2x higher titers than MaxCyte-transfected CHO-K1 cells. Customer Data. Parameters Examined: Transfection Method (FectoPRO ® vs MaxCyte) CHO Cell Type (CHO-K1, CHO-S) Media/Feed (4 tested) Culture Vessel (3 tested) Case Study #1 – Improving CHO-K1 and CHO-S IgG Production Maximum Titer Effected by Cell Type, Media, and Vessel Type CHO-K1 or CHO-S cells & Human IgG plasmid + Large-scale Electroporation MaxCyte STX …….. Culture Assessment: Gas & Electrolytes Nutrients, Metabolites & Osmolality Cell Viability & Viable Cell Density IgG titers A. Effect of Media/Feed on CHO-K1 IgG Harvest Titers B. Outcome: Superior Transfection Boosts IgG Harvest Titers FectoPRO CHO-K1 MaxCyte CHO-K1 MaxCyte CHO-S A. Schematic of CHO MGAT1- Stable Cell Line Generation – Identification of Top Clones in 2-3 Months Figure 4: Schematic of Parallel Use of Transient Protein Production and Stable Cell Line Generation. CHO MGAT1- cells (CHO-S engineered to disrupt MGAT1 gene) were transfected using MaxCyte electroporation with plasmid DNA encoding HIV gp120. HIV gp120 expressed is this cell line is enriched for high mannose sugar residue. Grams of transient protein are produced and purified within weeks for analysis of protein glycosylation profile and binding to broadly neutralizing antibodies (PLoS Biol, 16(8): e2005817; 2018). CHO MGAT1- cells were also transfected for generation of cell line stably expressing HIV gp120. Stable pools were created followed by clonal selection using ClonePix (Molecular Devices) followed by screening, identification of top producers and cell banking. D. Transiently and Stably Expressed rgp120 Display Identical Binding Profile to Broadly Neutralizing Antibodies CHO MGAT1 - Selection & stable pool 6- 10 weeks Clonal selection, production culture & cell bank 2 weeks Transient expression Grams of purified protein Purification, analysis & functional assays Stable gp120 CHO MGAT1 - Cell Line Functional Data from Transient Analysis & Banked Stable Cell Lines Figure 2: CHOZN-based Production of High-Quality Antibody. CHOZN cells were transfected with an antibody plasmid via MaxCyte electroporation. Transfected cells were seeded in either CD Fusion medium or Ex-Cell Advanced (Sigma Aldrich Cat # 14365C) medium at three different densities: 2e6 cells/mL, 4e6 cells/mL or 7e6 cells/mL. 24 hours post electroporation culture temperature was lowered to 32°C and sodium butyrate (NaBu) added (except where indicated in Panel A). A). CD Fusion media was supplemented with glucose and glutamine at time of feed. Antibody titers (HPLC) and cell viability were analyzed on Days 1, 4, 6, 8, 11, 13, 14 and 15 post transfection. B). Purified antibodies were run on reducing and non-reducing gels to assess quality. B. Protein Quality Unaffected by Media Choice Case Study #2 – Boosting CHOZN ® Cell Productivity Media/Feed & Seed Density Optimization A. Effects of Media Composition & Seed Density on Cell Growth & Antibody Titers Maximum Titer 6 Clones ELISA 24 hrs 16 days 45,000 Clones Screened Shake Flask 44 Clones Screened 6-well plates semi-solid matrix Top 0.1% clones 96-well plate 9 days ClonePix2 2-3 months Plasmid encoding: gp120 gene & APH(3') CHO MGAT1 - +

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Page 1: Overcoming Transient & Stable Productivity …maxcyte2.com/wp-content/uploads/2020/04/Overcoming...strategies and their implementation for overcoming these challenges using a unifying,

Navigating protein production from early-stage discovery research through therapeutic manufacturing is faced with avariety of challenges such as, low-titer transient productivity, lack of scalability, required re-validation upon switchingexpression systems, and the extended time for stable cell generation. These challenges are magnified when developingdifficult-to-express proteins like ADCs, bi-specifics and other novel formats. This poster presents data discussingstrategies and their implementation for overcoming these challenges using a unifying, high-performance cell engineeringtechnology. This will include means to boost transient and/or stable pool productivity through improved titers, the abilityto delay stable expression using scalable transfection, the use of the manufacturing CHO cell line for early-stagedevelopment, as well as ways to significantly shorten stable cell line generation.

Summary

• MaxCyte’s Flow Electroporation® Technology provides for high efficiency, high viability transfection of a variety of CHO cell lines, including CHO-S, CHOZN, and custom CHO cell lines. This enables development through commercial production in a single host cellbackground and eliminates mid-development revalidation studies due to host cell switching.

• MaxCyte high efficiency, high viability transfection enables:

‒ complete flexibility of post transfection culture conditions enabling laboratories to run full optimization studies to reach their quantity, quality, cost and timeline goals using transient expression;

‒ high seed densities post electroporation while maintaining high antibody expression and product quality, thereby improving laboratory productivity;

‒ rapid application of selection pressure for generation of high-producing CHO K1 GS-/- stable pool banks (>2 g/L hIgG1 within 6-7weeks of electroporation) or custom CHO stable cell lines (2-3 months)

• MaxCyte scalability supports a parallel protein production approach that rapidly generate relevant data via production of grams of protein transiently while simultaneously generating stable pools and cell lines to streamline clinical translation and commercialization.

Abstract

Overcoming Transient & Stable Productivity Challenges to Efficiently Scale Protein Production from Early Discovery Through Clinical Translation.Weili Wang, Joseph Abad, and James Brady. MaxCyte, Gaithersburg, MD, USA

Corresponding Author: James Brady; [email protected] MaxCyte, Inc., Tel: (301) 944-1700 [email protected], www.maxcyte.com

Flow Electroporation, MaxCyte, ExPERT and MaxCyte STX are trademarks of MaxCyte, Inc . CHOZN is a registered trademark of Merck KGaA. FectoPRO is a registered trademark of Polyplus-transfection® SA.

Figure 5: Stable Cell Line Generation in <3 Months. A). CHO MGAT1- cells were electroporated and stable cell lines generated using the ClonePix2.B). 44 clones were picked based upon clone fluorescence intensity. C). rgp120 was purified and quantified from top 6 producers. D). Purified rgp120was assessed for binding to 3 different broadly neutralizing antibodies and compared to binding profile of rgp120 produced transiently from eitherCHO GMAT1- cells or from original CHO-S cells. Low to no binding of neutralizing antibodies to rgp120 produced by CHO-S, with higher binding torgp120 produced by CHO-MGAT1- cells which produce rgp120 enriched for high mannose sugar residues. PLoS Biol, 13(8): e0197656; 2018.

Case Study #4 – Improving HIV Vaccine Efficacy & ManufacturingParallel Transient Production & Stable Cell Line Generation Using MaxCyte Scalability

B. Top Clones Identified by ClonePix2 C. 100-200x Productivity Increase Over Previous CHO-S Stable Cell Lines

rpg120 MGAT1- CHO (stable clone 5F) rpg120 MGAT1- CHO (transient) rpg120 CHO-S (transient)

isotype control mAb

no plateau

PG9 (V1/V2 Domain) PGT128 (V3 Domain)10-1074 (V3 Domain)

Figure 3: Bulk Stable Pool Generation and Production Runs in ~ 6 Weeks Reaching Titers >2 g/L. CHO K1 glutamine synthetase null cells fromHorizon were electroporated with a plasmid encoding a human IgG1 and GS at 3 µg/106 cells. Cells electroporated without DNA were used as anegative control. A). Media lacking glutamine (-Gln) with or without methionine sulfoximine (MSX) were added to transfected cells at Day 2 postelectroporation to begin selection. Cell viability was assessed throughout the 16-day culture period. Cells transfected with hIgG1 plasmid could berecovered in –Gln media, but not under dual selection indicating this cell line is more sensitive to selection than other CHO lines. Cellselectroporated with no DNA showed very low viability and could not be recovered. B). Production runs of bulk stable pools using three differentculture media were run. Cell viability and IgG titers were measured throughout the 25-dayek culture. Screening of base medium was needed toidentify optimum growth conditions and IgG production. Using optimal conditions bulk pool titers were >1 g/L by day 14 and >2 g/L on day 25.

Case Study #3 – Generation of High-Producing CHO K1 GS-/- Stable PoolsStable Pool Generation, Banking & Production Run Optimization in ~6 Weeks Yielding Titers >2 g/L

Tit

er (

mg/

L)

Elapsed DaysDays Post Electroporation

% V

iabi

lity

No DNA (-Gln)

No DNA (-Gln / 25uM MSX)

MAb (-Gln)

MAb (-Gln / 25uM MSX)

Start Selection Day 2

B.

A.

Elapsed Days

% V

iabi

lity

Elapsed Days

VC

D (

x10E

6 ce

lls/m

L)

Selection & Stable Bulk Pool Generation

3-4 weeks3 weeks

Expansion& Banking

Production

MaxCyte STX Electroporation

Banked Stable Pools Capable of >2 g/L MAb Production

Figure 1: Full Process Optimization in CHO Cell Line of Choice for Titer Improvements. CHO-K1 or CHO-S cells were transfected with a humanIgG plasmid via a single large-scale electroporation using the MaxCyte STX or FectoPRO transfection. Transfected CHO cells were cultured in 4different media (CHO-S and CHO-K1) and three different vessel:culture ratios (CHO-S only). Temperature was shifted to 32°C and 1mM sodiumbutyrate (HDAC inhibitor) added 24 hours post transfection. A). Significant effects of media/feed on IgG titers at the time of harvest for CHO-K1transfected cells. B). Antibody titers at the time of harvest were >6x higher for CHO-K1 cells transfected via MaxCyte electroporation compared toclient’s established FectoPRO method. MaxCyte-transfected CHO-S cultures produced roughly 2x higher titers than MaxCyte-transfected CHO-K1cells. Customer Data.

Parameters Examined:

• Transfection Method (FectoPRO® vs MaxCyte)

• CHO Cell Type (CHO-K1, CHO-S)

• Media/Feed (4 tested)

• Culture Vessel (3 tested)

Case Study #1 – Improving CHO-K1 and CHO-S IgG Production

Maximum Titer Effected by Cell Type, Media, and Vessel Type

CHO-K1 or CHO-S cells & Human IgG plasmid

+

Large-scale Electroporation

MaxCyte STX

……..

Culture Assessment:

• Gas & Electrolytes

• Nutrients, Metabolites & Osmolality

• Cell Viability & Viable Cell Density

• IgG titers

A. Effect of Media/Feed on CHO-K1 IgG Harvest Titers B. Outcome: Superior Transfection Boosts IgG Harvest Titers

FectoPROCHO-K1

MaxCyteCHO-K1

MaxCyteCHO-S

A. Schematic of CHO MGAT1- Stable Cell Line Generation – Identification of Top Clones in 2-3 Months

Figure 4: Schematic of Parallel Use of Transient Protein Production and Stable Cell Line Generation. CHO MGAT1- cells (CHO-S engineered todisrupt MGAT1 gene) were transfected using MaxCyte electroporation with plasmid DNA encoding HIV gp120. HIV gp120 expressed is this cell lineis enriched for high mannose sugar residue. Grams of transient protein are produced and purified within weeks for analysis of protein glycosylationprofile and binding to broadly neutralizing antibodies (PLoS Biol, 16(8): e2005817; 2018). CHO MGAT1- cells were also transfected for generation ofcell line stably expressing HIV gp120. Stable pools were created followed by clonal selection using ClonePix (Molecular Devices) followed byscreening, identification of top producers and cell banking.

D. Transiently and Stably Expressed rgp120 Display Identical Binding Profile to Broadly Neutralizing Antibodies

CHO MGAT1-

Selection &

stable pool

6- 10 weeks

Clonal selection, production culture & cell bank

2 weeks

Transient expression

Grams of purified protein

Purification, analysis

& functional assays

Stable gp120 CHO

MGAT1- Cell Line

Functional Data from

Transient Analysis &

Banked Stable Cell Lines

Figure 2: CHOZN-based Production of High-Quality Antibody.CHOZN cells were transfected with an antibody plasmid viaMaxCyte electroporation. Transfected cells were seeded ineither CD Fusion medium or Ex-Cell Advanced (Sigma AldrichCat # 14365C) medium at three different densities: 2e6cells/mL, 4e6 cells/mL or 7e6 cells/mL. 24 hours postelectroporation culture temperature was lowered to 32°C andsodium butyrate (NaBu) added (except where indicated in PanelA). A). CD Fusion media was supplemented with glucose andglutamine at time of feed. Antibody titers (HPLC) and cellviability were analyzed on Days 1, 4, 6, 8, 11, 13, 14 and 15 posttransfection. B). Purified antibodies were run on reducing andnon-reducing gels to assess quality.

B. Protein Quality Unaffected by Media Choice

Case Study #2 – Boosting CHOZN® Cell Productivity

Media/Feed & Seed Density Optimization

A. Effects of Media Composition & Seed Density on Cell Growth & Antibody Titers

Maximum Titer

6 ClonesELISA

24 hrs 16 days

45,000 Clones Screened

Shake Flask

44 Clones Screened

6-well platessemi-solid matrix

Top 0.1% clones96-well plate

9 days

ClonePix2

2-3 months

Plasmid encoding:gp120 gene & APH(3')

CHO MGAT1-

+