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Synthetic Biology and iGEM

Synthetic Biology and iGEM2016.igem.org/wiki/images/2/21/T--Pittsburgh--HPBioE.pdf · Cell-Free, Paper-Based Sensor Paper-Based Synthetic Gene Networks, Pardee et al., 2014

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Page 1: Synthetic Biology and iGEM2016.igem.org/wiki/images/2/21/T--Pittsburgh--HPBioE.pdf · Cell-Free, Paper-Based Sensor Paper-Based Synthetic Gene Networks, Pardee et al., 2014

Synthetic Biology

and iGEM

Page 2: Synthetic Biology and iGEM2016.igem.org/wiki/images/2/21/T--Pittsburgh--HPBioE.pdf · Cell-Free, Paper-Based Sensor Paper-Based Synthetic Gene Networks, Pardee et al., 2014

International

Genetically Engineered

Machine (iGEM)

Competition

Page 3: Synthetic Biology and iGEM2016.igem.org/wiki/images/2/21/T--Pittsburgh--HPBioE.pdf · Cell-Free, Paper-Based Sensor Paper-Based Synthetic Gene Networks, Pardee et al., 2014

iGEM Jamboree 2015

Page 4: Synthetic Biology and iGEM2016.igem.org/wiki/images/2/21/T--Pittsburgh--HPBioE.pdf · Cell-Free, Paper-Based Sensor Paper-Based Synthetic Gene Networks, Pardee et al., 2014

Synthetic biology: what

is it?

Cover of Man

Modified, David

Fishlock

Page 5: Synthetic Biology and iGEM2016.igem.org/wiki/images/2/21/T--Pittsburgh--HPBioE.pdf · Cell-Free, Paper-Based Sensor Paper-Based Synthetic Gene Networks, Pardee et al., 2014

“The Lego of Life”

http://souterre.com/biobricks/

Page 6: Synthetic Biology and iGEM2016.igem.org/wiki/images/2/21/T--Pittsburgh--HPBioE.pdf · Cell-Free, Paper-Based Sensor Paper-Based Synthetic Gene Networks, Pardee et al., 2014

Synthetic biology:

how do we do it?

Page 7: Synthetic Biology and iGEM2016.igem.org/wiki/images/2/21/T--Pittsburgh--HPBioE.pdf · Cell-Free, Paper-Based Sensor Paper-Based Synthetic Gene Networks, Pardee et al., 2014
Page 8: Synthetic Biology and iGEM2016.igem.org/wiki/images/2/21/T--Pittsburgh--HPBioE.pdf · Cell-Free, Paper-Based Sensor Paper-Based Synthetic Gene Networks, Pardee et al., 2014

Synthetic biology: why is

it important?

Page 9: Synthetic Biology and iGEM2016.igem.org/wiki/images/2/21/T--Pittsburgh--HPBioE.pdf · Cell-Free, Paper-Based Sensor Paper-Based Synthetic Gene Networks, Pardee et al., 2014

Synthetic biology:

why is it important?

Page 10: Synthetic Biology and iGEM2016.igem.org/wiki/images/2/21/T--Pittsburgh--HPBioE.pdf · Cell-Free, Paper-Based Sensor Paper-Based Synthetic Gene Networks, Pardee et al., 2014

Synthetic biology:

why is it important?

Page 11: Synthetic Biology and iGEM2016.igem.org/wiki/images/2/21/T--Pittsburgh--HPBioE.pdf · Cell-Free, Paper-Based Sensor Paper-Based Synthetic Gene Networks, Pardee et al., 2014

Transcription and

Translation

Page 12: Synthetic Biology and iGEM2016.igem.org/wiki/images/2/21/T--Pittsburgh--HPBioE.pdf · Cell-Free, Paper-Based Sensor Paper-Based Synthetic Gene Networks, Pardee et al., 2014

Our Project:

Paper-Based Cell-Free Thallium

Sensor

Page 13: Synthetic Biology and iGEM2016.igem.org/wiki/images/2/21/T--Pittsburgh--HPBioE.pdf · Cell-Free, Paper-Based Sensor Paper-Based Synthetic Gene Networks, Pardee et al., 2014

Paper-Based Sensor

BBC, “Prototype paper test can detect Ebola strains”

Page 14: Synthetic Biology and iGEM2016.igem.org/wiki/images/2/21/T--Pittsburgh--HPBioE.pdf · Cell-Free, Paper-Based Sensor Paper-Based Synthetic Gene Networks, Pardee et al., 2014

Cell-Free

picky

time

consuming

Page 15: Synthetic Biology and iGEM2016.igem.org/wiki/images/2/21/T--Pittsburgh--HPBioE.pdf · Cell-Free, Paper-Based Sensor Paper-Based Synthetic Gene Networks, Pardee et al., 2014

Thallium

Page 16: Synthetic Biology and iGEM2016.igem.org/wiki/images/2/21/T--Pittsburgh--HPBioE.pdf · Cell-Free, Paper-Based Sensor Paper-Based Synthetic Gene Networks, Pardee et al., 2014

Our Project:

Paper-Based Cell-Free Thallium

Sensor

Page 17: Synthetic Biology and iGEM2016.igem.org/wiki/images/2/21/T--Pittsburgh--HPBioE.pdf · Cell-Free, Paper-Based Sensor Paper-Based Synthetic Gene Networks, Pardee et al., 2014

Genetic Circuits

Page 18: Synthetic Biology and iGEM2016.igem.org/wiki/images/2/21/T--Pittsburgh--HPBioE.pdf · Cell-Free, Paper-Based Sensor Paper-Based Synthetic Gene Networks, Pardee et al., 2014

Genetic Circuit

Diagram

Page 19: Synthetic Biology and iGEM2016.igem.org/wiki/images/2/21/T--Pittsburgh--HPBioE.pdf · Cell-Free, Paper-Based Sensor Paper-Based Synthetic Gene Networks, Pardee et al., 2014

Toehold Switch

Mechanism of the Toehold Switch, Harvard University,

2014

Page 20: Synthetic Biology and iGEM2016.igem.org/wiki/images/2/21/T--Pittsburgh--HPBioE.pdf · Cell-Free, Paper-Based Sensor Paper-Based Synthetic Gene Networks, Pardee et al., 2014

Cell-Free, Paper-Based

Sensor

Paper-Based Synthetic Gene Networks, Pardee et

al., 2014

Page 21: Synthetic Biology and iGEM2016.igem.org/wiki/images/2/21/T--Pittsburgh--HPBioE.pdf · Cell-Free, Paper-Based Sensor Paper-Based Synthetic Gene Networks, Pardee et al., 2014

Cloning

Step 1: Cut DNA

Step 2: Gel

Electrophoresis

Step 3: Ligate DNA

Step 4:

Transformation

vector

insert

Page 22: Synthetic Biology and iGEM2016.igem.org/wiki/images/2/21/T--Pittsburgh--HPBioE.pdf · Cell-Free, Paper-Based Sensor Paper-Based Synthetic Gene Networks, Pardee et al., 2014

PCR• Polymerase Chain Reaction