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Viikki Plant Science Centre
Annual Report 2016
The Viikki Plant Science Centre (ViPS) is a virtual research environment
on the Viikki campus of the University of Helsinki. In 2016, more than
250 researchers from 36 different research groups were part of the
centre. ViPS has high international visibility, with a stimulating high
impact research environment. It integrates the basic and applied plant
researchers on campus with a bioinformatic development strategy
and encourages new collaborative projects. ViPS is guided by a board
with members from the key research fields, an international scientific
advisory board and a local advisory board. There are several
infrastructures associated with ViPS and available to members for use
in their research. ViPS actively participates and develops education in
collaboration with the Doctoral Programme in Plant Sciences, other
relevant doctoral programmes and the faculties on campus for
undergraduate and graduate training.
Index
Members 2
Funding 2
Publications 3
International seminars and visits 3
Positions of trust 4
2
Members
For the term 1 May, 2016 - 31April, 2021, seven new research groups (in bold) were accepted to ViPS, bringing the number of research groups to 36. Applications were evaluated by the Scientific Advisory Committee (SAB) an decisions made by the ViPS board based on their recommendation. Pedro Aphalo Fred Asiegbu Jaana Bäck Frank Berninger Mikael Brosché Paula Elomaa Kurt Fagerstedt Jussi Heinonsalo Ykä Helariutta Kristiina Himanen Teemu Hölttä Timo Hytönen Jaakko Hyvönen Jaakko Kangasjärvi Anna Kärkönen Helena Korpelainen Anna-Liisa Laine Ari-Pekka Mähönen
Annikki Mäkelä Kristiina Mäkinen Anne Ojala Kirk Overmyer Pauliina Palonen Tapio Palva Mari Pihlatie Minna Pirhonen Albert Porcar-Castell Jouko Rikkinen Matt Robson Jarkko Salojärvi Alan Schulman Fred Stoddard Teemu Teeri Jari Valkonen Timo Vesala Michael Wrzaczek
Funding
The total funding for ViPS in 2016 was 9.6M€ (2015 9.1M€). Basic and external funding, including sources are listed separately in the table below.
Basic funding 1 155 481
External funding 8 513 006
TOTAL 9 668 487
University of Helsinki 1 155 481
Academy of Finland 5 613 649
EU 1 464 154
Ministries 650 022
Private funding 481 217
Public funding 161 567
Other foreign funding 142 397
TOTAL 9 668 487
3
Publications
A total of 204 publications were produced by ViPS members in 2016. Categories are according to the
University of Helsinki TUHAT database system.
International seminars and visits
Members of ViPS are active in disseminating their research to the international community at
conferences, institutes as well as popularisation of results to the general public.
ViPS has hosted numerous international visitors throughout 2016. Many of the visitors gave
scientific seminars to the research community or took part in doctoral education courses. In
addition, ViPS members have participated in international and national visits to other scientific
institutes.
Category No.
Keynote & invited lectures/talks 41
Public talks 5
International hosted seminars 24
International hosted visitors 58
Visits to scientific institutes 15
TOTAL 143
Category No.
A1 Refereed journal articles 111
A2 Reviews in scientific journals 7
A3 Contributions to book/other compilations (refereed) 8
A4 Articles in conference publications (refereed) 2
B1 Unrefereed journal articles 9
B2 Contributions to book/other compilations (non-refereed) 2
B3 Unrefereed articles in conference proceedings 15
C1 Published scientific monographs 3
D1 Articles in professional journals 5
D2 Articles in professional hand or guide book or in a professional data system, or text book material
1
D3 Articles in Professional Conference Proceedings 1
D4 Published development or research reports 2
E1 Popular articles, newspaper articles 16
E2 Popular monographs 2
G5 Doctoral theses, articles 13
I2 ICT programs or applications 8
TOTAL 204
4
Positions of trust
ViPS members have acted in numerous important roles as editors, peer reviewers, organisers,
opponents etc.
Category No.
Editor of research journal 3
Peer reviewer of manuscripts (72 different journals) 207
Chair or member of organising committee for conferences, workshops, courses, seminars 18
Expert or consultancy positions 14
Membership or other role in international/national scientific committee, board, society 11
Pre-examiner or opponent of doctoral thesis 5
TOTAL 258
5
Publications
A1 Refereed journal articles
Effect of vegetational shade and its components on stomatal responses to red, blue and green
light in two deciduous tree species with different shade tolerance
Aasamaa, K. & Aphalo, P. J. Jan 2016 In : Environmental and Experimental Botany. 121, p. 94-101 8 p.
Contribution of Acacia senegal to biomass and soil carbon in plantations of varying age in Sudan
Abaker, W. E., Berninger, F., Saiz, G., Braojos, V. & Starr, M. 15 May 2016 In : Forest Ecology and
Management. 368, p. 71-80 10 p.
The contribution of ericoid plants to soil nitrogen chemistry and organic matter decomposition in
boreal forest soil
Adamczyk, B. W., Ahvenainen, A. A., Sietiö, O-M., Kanerva, S. M., Kieloaho, A-J. S., Smolander, A.,
Kitunen, V., Saranpää, P., Laakso, T., Strakova, P. & Heinonsalo, E. J. 2016 In : Soil Biology &
Biochemistry. 103, p. 394-404 11 p.
Using Spectral Chlorophyll Fluorescence and the Photochemical Reflectance Index to Predict
Physiological Dynamics
Atherton, J. M., Nichol, C. J. & Porcar Castell, J. A. 2016 In : Remote Sensing of Environment. 176, p.
17-30 14 p.
Genome organisation and expression profiling of ABC protein-encoding genes in Heterobasidion
annosum s.l. complex
Baral, B., Kovalchuk, A. & Asiegbu, F. O. Mar 2016 In : Fungal Biology. 120, 3, p. 376-384 9 p.
In silico evaluation of plant genetic resources to search for traits for adaptation to climate change
Bari, A., Khazaei, H., Stoddard, F. L., Street, K., Sillanpaa, M. J., Chaubey, Y. P., Dayanandan, S.,
Endresen, D. T. F., De Pauw, E. & Damania, A. B. Feb 2016 In : Climatic Change. 134, 4, p. 667-680 14
p.
Resin exudation and resinicolous communities on Araucaria humboldtensis in New Caledonia
Beimforde, C., Seyfullah, L., Perrichot, V., Schmidt, K., Rikkinen, J. & Schmidt, A. Dec 2016 In :
Arthropod - Plant Interactions.
Towards the reconstitution of a two-enzyme cascade for resveratrol synthesis on potyvirus
particles
Besong Epse Ndika, J. E., Wahlsten, M., Cardinale, D., Pille, J., Walter, J., Michon, T. & Mäkinen, K. M.
10 Feb 2016 In : Frontiers in Plant Science. 7, 12 p., 89
Separating water-potential induced swelling and shrinking from measured radial stem variations
reveals a cambial growth and osmotic concentration signal
Chan, T., Hölttä, T., Berninger, F., Mäkinen, H., Nöjd, P., Mencuccini, M. & Nikinmaa, E. Feb 2016 In :
Plant, Cell and Environment. 39, 2, p. 233-244 12 p.
6
Evaluating the performance of land surface model ORCHIDEE-CAN v1.0 on water and energy flux
estimation with a single- and multi-layer energy budget scheme
Chen, Y. , Ryder, J. , Bastrikov, V. , McGrath, M. J. , Naudts, K. , Otto, J. , Ottle, C. , Peylin, P. , Polcher,
J. , Valade, A. , Black, A. , Elbers, J. A. , Moors, E. , Foken, T. , van Gorsel, E. , Haverd, V. , Heinesch, B.
, Tiedemann, F. , Knohl, A. , Launiainen, S. & 4 others Loustau, D., Ogee, J., Vesala, T. & Luyssaert, S.
2 Sep 2016 In : Geoscientific Model Development. 9, 9, p. 2951-2972 22 p.
Sexual competition affects biomass partitioning, carbon-nutrient balance, Cd allocation and
ultrastructure of Populus cathayana females and males exposed to Cd stress
Chen, J., Duan, B., Xu, G., Korpelainen, H., Niinemets, Ü. & Li, C. 2016 In : Tree Physiology. 36, 11, p.
1353-1368 16 p.
Discordant temporal development of bacterial phyla and the emergence of core in the fecal
microbiota of young children
Cheng, J., Ringel-Kulka, T., Heikamp-de Jong, I., Ringel, Y., Carroll, I., de Vos, W. M., Salojarvi, J. &
Satokari, R. Apr 2016 In : ISME Journal. 10, 4, p. 1002-1014 13 p.
The adoption of cv. Igorota in the Philippines and Vietnam
Chien, D. H., Ganga, Z. N., Simongo, D. K., Kiswa, C. G., Gonzales, I. C., Perez, J., Tung, P. X., Hau, N. T.,
Artola, K., Valkonen, J. P. T., Li, C. & VanderZaag, P. 2016 In : American Journal of Potato Research.
93, 3, p. 296-301 6 p.
Validation of 3D-CMCC Forest Ecosystem Model (v.5.1) against eddy covariance data for 10
European forest sites
Collalti, A., Marconi, S., Ibrom, A., Trotta, C., Anav, A., D'Andrea, E., Matteucci, G., Montagnani, L.,
Gielen, B., Mammarella, I., Gruenwald, T., Knohl, A., Berninger, F., Zhao, Y., Valentini, R. & Santini, M.
2016 In : Geoscientific Model Development. 9, 2, p. 479-504 26 p.
Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation
Cui, F., Brosche, M., Lehtonen, M. T., Amiryousefi, A., Xu, E., Punkkinen, M., Valkonen, J. P. T., Fujii,
H. & Overmyer, K. 6 Jun 2016 In : Molecular Plant. 9, 6, p. 926-938 13 p.
Evaluation of a diagnostic microarray for the detection of major bacterial pathogens of potato
from tuber samples
Degefu, Y., Somervuo, P. J., Aittamaa, M., Virtanen, E. & Valkonen, J. P. T. 8 Mar 2016 In : EPPO
Bulletin. 46, 1, p. 103-111 9 p.
Growth, biomass allocation and photosynthetic responses are related to intensity of root
severance and soil moisture conditions in the plantation tree Cunninghamia lanceolata
Dong, T., Duan, B., Zhang, S., Korpelainen, H., Niinemets, U. & Li, C. Jul 2016 In : Tree Physiology. 36,
7, p. 807-817 11 p.
7
Occurrence and genetic diversity of Raspberry leaf blotch virus (RLBV) infecting cultivated and wild
Rubus species in Finland
Dong, L., Lemmetty, A., Latvala, S., Samuilova, O. & Valkonen, J. P. T. Jan 2016 In : Annals of Applied
Biology. 168, 1, p. 122-132 11 p.
Protein Phosphatase 2A in the Regulatory Network Underlying Biotic Stress Resistance in Plants
Durian, G., Rahikainen, M., Alegre, S., Brosche, M. & Kangasjarvi, S. 10 Jun 2016 In : Frontiers in Plant
Science. 7, 17 p., 812
Growth and photosynthetic CO2 responses of date palm plants to water availability
Elshibli, S., Elshibli, E. M. & Korpelainen, H. Jan 2016 In : Emirates Journal of Food and Agriculture.
28, 1, p. 58-65 8 p.
Real-time detection of arsenic cations from ambient air in boreal forest and lake environments
Faust, J. A., Junninen, H., Ehn, M., Chen, X., Ruusuvuori, K., Kieloaho, A-J., Bäck, J., Ojala, A., Jokinen,
T., Worsnop, D. R., Kulmala, M. & Petäjä, T. Feb 2016 In : Environmental Science & Technology
Letters. 3, 2, p. 42-46 5 p.
Tree species richness induces strong intraspecific variability of beech (Fagus sylvatica) leaf traits
and alleviates edaphic stress
Forey, E., Langlois, E., Lapa, G., Korboulewsky, N., Robson, T. M. & Aubert, M. Aug 2016 In :
European Journal of Forest Research. 135, 4, p. 707-717 11 p.
Large-eddy simulation and stochastic modeling of Lagrangian particles for footprint determination
in the stable boundary layer
Glazunov, A., Rannik, U., Stepanenko, V., Lykosov, V., Auvinen, M., Vesala, T. & Mammarella, I. 31
Aug 2016 In : Geoscientific Model Development. 9, 9, p. 2925-2949 25 p.
Branch age and light conditions determine leaf-area-specific conductivity in current shoots of Scots
pine
Grönlund, L., Hölttä, T. & Mäkelä, A. Aug 2016 In : Tree Physiology. 36, 8, p. 994-1006 13 p.
Species-specific competition and N fertilization regulate non-structural carbohydrate contents in
two Larix species
Guo, Q., Li, J., Zhang, Y., Zhang, J., Lu, D., Korpelainen, H. & Li, C. 15 Mar 2016 In : Forest Ecology and
Management. 364, p. 60-69 10 p.
Conceptual design of a measurement network of the global change
Hari, P. K. J., Petäjä, T. T., Bäck, J. K., Kerminen, V-M., Lappalainen, H. K., Vihma, T., Laurila, T.,
Viisanen, Y., Vesala, T. V. & Kulmala, M. T. 2016 In : Atmospheric Chemistry and Physics. 16, p. 1017-
1028 12 p.
Will bryophytes survive in a warming world?
He, X., He, K. S. & Hyvönen, J. Apr 2016 In : Perspectives in Plant Ecology, Evolution and Systematics.
19, p. 49-60 12 p.
8
Identifying sex in non-fertile individuals of the moss Drepanocladus turgescens
(Bryophyta:Amblystegiaceae) using a novel molecular approach
Hedenas, L., Korpelainen, H. & Bisang, I. Sep 2016 In : Journal of Plant Research. 129, 5, p. 1005-1010
6 p.
Tracking the Seasonal Dynamics of Boreal Forest Photosynthesis Using EO-1 Hyperion Reflectance:
Sensitivity to Structural and Illumination Effects
Hernandez-Clemente, R., Kolari, P., Porcar-Castell, A., Korhonen, L. & Mottus, M. Sep 2016 In : IEEE
Transactions on Geoscience and Remote Sensing. 54, 9, p. 5105-5116 12 p.
A Dominant Mutation in the HT1 Kinase Uncovers Roles of MAP Kinases and GHR1 in CO2-Induced
Stomatal Closure
Horak, H., Sierla, M., Toldsepp, K., Wang, C., Wang, Y-S., Nuhkat, M., Valk, E., Pechter, P., Merilo, E.,
Salojärvi, J., Overmyer, K., Loog, M., Brosche, M., Schroeder, J. I., Kangasjärvi, J. & Kollist, H. Oct 2016
In : Plant Cell. 28, 10, p. 2493-2509 17 p.
Cytokinin and Auxin Display Distinct but Interconnected Distribution and Signaling Profiles to
Stimulate Cambial Activity
Immanen, J., Nieminen, K., Smolander, O-P., Kojima, M., Serra, J. A., Koskinen, P., Zhang, J., Elo, A.,
Mähönen, A. P., Street, N., Bhalerao, R. P., Paulin, L., Auvinen, P., Sakakibara, H. & Helariutta, Y. 8
Aug 2016 In : Current Biology. 26, 15, p. 1990-1997 8 p.
Molecular insights into the function of the viral RNA silencing suppressor HCPro
Ivanov, K., Eskelin, K. J., Bašić, M., De, S., Lohmus, A., Varjosalo, M. T. & Mäkinen, K. M. 2016 In :
Plant Journal. 85, 1, p. 30-45 16 p.
BODYGUARD is required for the biosynthesis of cutin in Arabidopsis
Jakobson, L., Lindgren, L. O., Verdier, G., Laanemets, K., Brosche, M., Beisson, F. & Kollist, H. Jul 2016
In : New Phytologist. 211, 2, p. 614-626 13 p.
Natural Variation in Arabidopsis Cvi-0 Accession Reveals an Important Role of MPK12 in Guard Cell
CO2 Signaling
Jakobson, L. , Vaahtera, L. , Tõldsepp, K. , Nuhkat, M. , Wang, C. , Wang, Y-S. , Hõrak, H. , Valk, E. ,
Pechter, P. , Sindarovska, Y. , Tang, J. , Xiao, C. , Xu, Y. , Gerst Talas, U. , García-Sosa, A. T. ,
Kangasjärvi, S. , Maran, U. , Remm, M. , Roelfsema, M. R. G. , Hu, H. & 5 others Kangasjärvi, J., Loog,
M., Schroeder, J. I., Kollist, H. & Brosché, M. 6 Dec 2016 In : PLoS Biology. 14, 12, 25 p., e2000322
Faba bean flavour and technological property improvement by thermal pre-treatments
Jiang, Z., Pulkkinen, M. J., Wang, Y., Lampi, A-M., Stoddard, F. L., Salovaara, H. O., Piironen, V. I. &
Sontag-Strohm, T. S. 2016 In : LWT-Food Science and Technology. 68, p. 295-305 11 p.
Role of needle surface waxes in dynamic exchange of mono- and sesquiterpenes
Joensuu, J., Altimir, N., Hakola, H., Rostas, M., Raivonen, M., Vestenius, M., Aaltonen, H., Riederer,
M. & Bäck, J. 2016 In : Atmospheric Chemistry and Physics. 16, 12, p. 7813-7823 11 p.
9
Dual targeted poplar ferredoxin NADP(+) oxidoreductase interacts with hemoglobin 1
Jokipii-Lukkari, S., Kastaniotis, A. J., Parkash, V., Sundström, R., Leiva-Eriksson, N., Nymalm, Y.,
Blokhina, O., Kukkola, E., Fagerstedt, K. V., Salminen, T. A., Läärä, E., Bulow, L., Ohlmeier, S.,
Hiltunen, J. K., Kallio, P. T. & Häggman, H. Jun 2016 In : Plant Science. 247, p. 138-149 12 p.
Photosystem II Repair and Plant Immunity: Lessons Learned from Arabidopsis Mutant Lacking the
THYLAKOID LUMEN PROTEIN 18.3
Järvi, S., Isojärvi, J., Kangasjärvi, S., Salojarvi, J., Mamedov, F., Suorsa, M. & Aro, E-M. 31 Mar 2016 In
: Frontiers in Plant Science. 7, 13 p., 405
Protocol: a method to study the direct reprogramming of lateral root primordia to fertile shoots
Kareem, A., Radhakrishnan, D., Wang, X., Bagavathiappan, S., Trivedi, Z. B., Sugimoto, K., Xu, J.,
Mähonen, A. P. & Prasad, K. 12 May 2016 In : Plant Methods. 12, 14 p., 27
Priming effect increases with depth in a boreal forest soil
Karhu, K., Hilasvuori, E., Fritze, H., Biasi, C., Nykänen, H., Liski, J., Vanhala, P., Heinonsalo, J. &
Pumpanen, J. Aug 2016 In : Soil Biology & Biochemistry. 99, p. 104-107 4 p.
Modelling dissolved organic carbon transport in boreal catchments
Kasurinen, V. J. S., Alfredsen, K., Ojala, A. K., Pumpanen, J. S., Weyhenmeyer, G., Futter, M., Laudon,
H. & Berninger, F. A. 2016 In : Water Resources Research.
Modeling nonlinear responses of DOC transport in boreal catchments in Sweden
Kasurinen, V., Alfredsen, K., Ojala, A., Pumpanen, J., Weyhenmeyer, G. A., Futter, M. N., Laudon, H.
& Berninger, F. Jul 2016 In : Water Resources Research. 52, 7, p. 4970-4989 20 p.
Lack of GLYCOLATE OXIDASE1, but Not GLYCOLATE OXIDASE2, Attenuates the Photorespiratory
Phenotype of CATALASE2-Deficient Arabidopsis
Kerchev, P., Waszczak, C., Lewandowska, A., Willems, P., Shapiguzov, A., Li, Z., Alseekh, S.,
Muhlenbock, P., Hoeberichts, F. A., Huang, J., Van der Kelen, K., Kangasjärvi, J., Fernie, A. R., De
Smet, R., Van de Peer, Y., Messens, J. & Van Breusegem, F. Jul 2016 In : Plant Physiology. 171, 3, p.
1704-1719 16 p.
Stimulation of soil organic nitrogen pool: The effect of plant and soil organic matter degrading
enzymes
Kieloaho, A-J. S., Pihlatie, M. K., Dominguez Carrasco, M. D. R., Kanerva, S. M., Parshintsev, E.,
Riekkola, M-L., Pumpanen, J. S. & Heinonsalo, E. J. 2016 In : Soil Biology & Biochemistry. 96, p. 97-
106 10 p.
Faecal Metaproteomic Analysis Reveals a Personalized and Stable Functional Microbiome and
Limited Effects of a Probiotic Intervention in Adults
Kolmeder, C. A., Salojarvi, J., Ritari, J., de Been, M., Raes, J., Falony, G., Vieira-Silva, S., Kekkonen, R.
A., Corthals, G. L., Palva, A., Salonen, A. & de Vos, W. M. 12 Apr 2016 In : PLoS One. 11, 4, 23 p.,
0153294
10
Simple proxies for estimating the concentrations of monoterpenes and their oxidation products at
a boreal forest site
Kontkanen, J., Paasonen, P., Aalto, J., Bäck, J., Rantala, P., Petäjä, T. & Kulmala, M. 28 Oct 2016 In :
Atmospheric Chemistry and Physics. 16, 20, p. 13291-13307 17 p.
Effective detection of indoor fungi by metabarcoding
Korpelainen, H. S., Pietiläinen, M. K. & Huotari, T. T. 2016 In : Annals of Microbiology. 66, 1, p. 495-
498 4 p.
Variation in photosynthetic properties among bog plants
Korrensalo, A., Hajek, T., Vesala, T., Mehtatalo, L. & Tuittila, E-S. Dec 2016 In : Botany. 94, 12, p.
1127-1139 13 p.
TERMINAL FLOWER1 is a breeding target for a novel everbearing trait and tailored flowering
responses in cultivated strawberry (Fragaria x ananassa Duch.)
Koskela, E. A., Sonsteby, A., Flachowsky, H., Heide, O. M., Hanke, M-V., Elomaa, P. & Hytönen, T. Sep
2016 In : Plant biotechnology journal. 14, 9, p. 1852-1861 10 p.
Enhanced Volatile Organic Compounds emissions and organic aerosol mass increase the oligomer
content of atmospheric aerosols
Kourtchev, I. , Giorio, C. , Manninen, A. , Wilson, E. , Mahon, B. , Aalto, J. , Kajos, M. , Venables, D. ,
Ruuskanen, T. , Levula, J. , Loponen, M. , Connors, S. , Harris, N. , Zhao, D. , Kiendler-Scharr, A. ,
Mentel, T. , Rudich, Y. , Hallquist, M. , Doussin, J-F. , Maenhaut, W. & 5 others Bäck, J., Petäjä, T.,
Wenger, J., Kulmala, M. & Kalberer, M. 13 Oct 2016 In : Scientific Reports. 6, 9 p., 35038
The long-term impact of low-intensity surface fires on litter decomposition and enzyme activities
in boreal coniferous forests
Köster, K., Berninger, F., Heinonsalo, J., Linden, A., Köster, E., Ilvesniemi, H. & Pumpanen, J. 2016 In :
International Journal of Wildland Fire. 25, 2, p. 213-223 11 p.
How Time since Forest Fire Affects Stand Structure, Soil Physical-Chemical Properties and Soil CO2
Efflux in Hemiboreal Scots Pine Forest Fire Chronosequence?
Köster, K., Köster, E., Orumaa, A., Parro, K., Jõgiste, K., Berninger, F. A., Pumpanen, J. S. & Metslaid,
M. 2016 In : Forests. 7, 9, 12 p., 201
Do the energy fluxes and surface conductance of boreal coniferous forests in Europe scale with
leaf area?
Launiainen, S., Katul, G. G., Kolari, P., Lindroth, A., Lohila, A., Aurela, M., Varlagin, A., Grelle, A. &
Vesala, T. Dec 2016 In : Global Change Biology. 22, 12, p. 4096-4113 18 p.
Males exhibit competitive advantages over females of Populus deltoides under salinity stress
Li, Y., Duan, B., Chen, J., Korpelainen, H., Niinemets, Ü. & Li, C. 2016 In : Tree Physiology. 36, 12, p.
1573-1584 12 p.
11
Importance of vegetation classes in modeling CH4 emissions from boreal and subarctic wetlands in
Finland
Li, T., Raivonen, M., Alekseychik, P., Aurela, M., Lohila, A., Zheng, X., Zhang, Q., Wang, G.,
Mammarella, I., Rinne, J., Yu, L., Xie, B., Vesala, T. & Zhang, W. 1 Dec 2016 In : Science of the Total
Environment. 572, p. 1111-1122 12 p.
Durable coexistence of donor and recipient strains after fecal microbiota transplantation
Li, S. S., Zhu, A., Benes, V., Costea, P. I., Hercog, R., Hildebrand, F., Huerta-Cepas, J., Nieuwdorp, M.,
Salojarvi, J., Voigt, A. Y., Zeller, G., Sunagawa, S., de Vos, W. M. & Bork, P. 29 Apr 2016 In : Science.
352, 6285, p. 586-589 4 p.
Effects of nitrogen and phosphorus supply on growth and physiological traits of two Larix species
Li, J., Guo, Q., Zhang, J., Korpelainen, H. & Li, C. Oct 2016 In : Environmental and Experimental
Botany. 130, p. 206-215 10 p.
Developmental changes in Scots pine transcriptome during heartwood formation
Lim, K-J., Paasela, T., Harju, A., Venäläinen, M., Paulin, L., Auvinen, P., Kärkkäinen, K. & Teeri, T. H.
2016 In : Plant Physiology. 172, 3, p. 1403-1417 15 p.
Osmolality and non-structural carbohydrate composition in the secondary phloem of trees across
a latitudinal gradient in Europe
Lintunen, A. M. , Paljakka, T. V. S. , Jyske, T. , Peltoniemi, M. , Sterck, F. , Von Arx, G. , Cochard, H. ,
Copini, P. , Caldeira, M. C. , Delzon, S. , Gebauer, R. , Grönlund, L. H. , Kiorapostolou, N. , Lechthaler,
S. , Lobo-do-Vale, R. , Peters, . R. L. , Petit, G. , Prendin, A. L. , Salmon, Y. L. B. , Steppe, K. & 4 others
Urban, J., Roig Juan, S., Robert, E. M. & Hölttä, T. S. 2016 In : Frontiers in Plant Science. 7, 15 p., 726
Protein composition of 6K2-induced membrane structures formed during Potato virus A infection
Lohmus, A., Varjosalo, M. & Mäkinen, K. Aug 2016 In : Molecular Plant Pathology. 17, 6, p. 943-958
16 p.
Pinus sylvestris as a missing source of nitrous oxide and methane in boreal forest
Machacova, K., Back, J., Vanhatalo, A., Halmeenmäki, E., Kolari, P., Mammarella, I., Pumpanen, J.,
Acosta, M., Urban, O. & Pihlatie, M. 21 Mar 2016 In : Scientific Reports. 6, 8 p., 23410
Changes in very fine root respiration and morphology with time since last fire in a boreal forest
Makita, N., Pumpanen, J., Köster, K. & Berninger, F. May 2016 In : Plant and Soil. 402, 1-2, p. 303-316
14 p.
Seedborne Pathogenic Fungi in Common Bean (Phaseolus vulgaris cv. INTA Rojo) in Nicaragua
Marcenaro, D. & Valkonen, J. P. T. 2016 In : PLoS One. 11, 12, 18 p., 0168662
Reconstruction of Holocene carbon dynamics in a large boreal peatland complex, southern Finland
Mathijssen, P. J. H., Väliranta, M. M., Korrensalo, A., Alekseychik, P. K., Vesala, T. V., Rinne, H. J. I. &
Tuittila, E-S. 2016 In : Quaternary Science Reviews. 142, p. 1-15 15 p.
12
Spreading the news: subcellular and organellar reactive oxygen species production and signalling
Mignolet-Spruyt, L., Xu, E., Idänheimo, N., Hoeberichts, F. A., Muhlenbock, P., Brosche, M., Van
Breusegem, F. & Kangasjärvi, J. Jun 2016 In : Journal of Experimental Botany. 67, 13, p. 3831-3844 14
p.
Calibration and validation of a semi-empirical flux ecosystem model for coniferous forests in the
Boreal region
Minunno, F., Peltoniemi, M., Launiainen, S., Aurela, M., Lindroth, A., Lohila, A., Mammarella, I.,
Minkkinen, K. & Mäkelä, A. 10 Dec 2016 In : Ecological Modelling. 341, p. 37-52 16 p.
Bridging empirical and carbon-balance based forest site productivity - Significance of below-
ground allocation
Mäkelä, A., Pulkkinen, M. & Mäkinen, H. 15 Jul 2016 In : Forest Ecology and Management. 372, p.
64-77 14 p.
De novo transcriptomic assembly and profiling of Rigidoporus microporus during saprotrophic
growth on rubber wood
Oghenekaro, A. O., Raffaello, T., Kovalchuk, A. & Asiegbu, F. O. 15 Mar 2016 In : BMC Genomics. 17,
17 p., 234
Defence-related gene expression of Hevea brasiliensis clones in response to the white rot
pathogen, Rigidoporus microporus
Oghenekaro, A. O., Omorusi, V. I. & Asiegbu, F. O. Jan 2016 In : Forest Pathology. 46, 4, p. 318 - 326 9
p.
A comparison of methods to estimate photosynthetic light absorption in leaves with contrasting
morphology
Olascoaga, B., MacArthur, A., Atherton, J. & Porcar-Castell, A. 2016 In : Tree Physiology. 36, 3, p.
368-379 12 p.
Symplastic communication in organ formation and tissue patterning
Otero, S., Helariutta, Y. & Benitez-Alfonso, Y. Feb 2016 In : Current Opinion in Plant Biology. 29, p.
21-28 8 p.
The role of hyperparasitism in microbial pathogen ecology and evolution
Parratt, S. R. & Laine, A-L. Aug 2016 In : ISME Journal. 10, 8, p. 1815-1822 8 p.
Consequences for pelagic energy mobilisation of a sudden browning episode without a clear
increase in DOC concentration - a case of a boreal pristine lake.
Peltomaa, E. T. & Ojala, A. K. Oct 2016 In : Aquatic Sciences. 78, 4, p. 627-639 13 p.
13
BAECC: A Field Campaign to Elucidate the Impact of Biogenic Aerosols on Clouds and Climate
Petäjä, T. , O’Connor, E. J. , Moisseev, D. , Sinclair, V. A. , Manninen, A. J. , Väänänen, R. , von Lerber,
A. , Thornton, J. A. , Nicoll, K. , Petersen, W. , Venkatachalam, C. , Smith, J. N. , Winkler, P. M. ,
Krüger, O. , Hakola, H. , Timonen, H. , Brus, D. , Laurila, T. , Asmi, E. , Riekkola, M-L. & 11 others
Mona, L., Massoli, P., Engelmann, R., Komppula, M., Wang, J., Kuang, C., Bäck, J., Virtanen, A., Levula,
J., Ritsche, M. & Hickmon, N. 22 Nov 2016 In : Bulletin of the American Meteorological Society. 97,
10, p. 1909-1928 20 p.
Two polyketide synthases are necessary for 4-hydroxy-5-methylcoumarin biosynthesis in Gerbera
hybrida
Pietiäinen, M., Kontturi, J., Paasela, T., Deng, X., Ainasoja, M., Nyberg, P., Hotti, H. & Teeri, T. H. Sep
2016 In : Plant Journal. 87, 6, p. 548-558 11 p.
Seasonal and diurnal variation in CO fluxes from an agricultural bioenergy crop
Pihlatie, M., Rannik, U., Haapanala, S., Peltola, O., Shurpali, N., Martikainen, P. J., Lind, S., Hyvönen,
N., Virkajärvi, P., Zahniser, M. & Mammarella, I. 4 Oct 2016 In : Biogeosciences. 13, 19, p. 5471-5485
15 p.
Fragmentation-related patterns of genetic differentiation in pedunculate oak (Quercus robur) at
two hierarchical scales
Pohjanmies, T., Elshibli, S., Pulkkinen, P., Rusanen, M., Vakkari, P., Korpelainen, H. & Roslin, T. 2016
In : Silva Fennica. 50, 2, 15 p., 1510
Climatic controls on leaf litter decomposition across European forests and grasslands revealed by
reciprocal litter transplantation experiments
Portillo-Estrada, M., Pihlatie, M., Korhonen, J. F. J., Levula, J., Frumau, A. K. F., Ibrom, A., Lembrechts,
J. J., Morillas, L., Horvath, L., Jones, S. K. & Niinemets, U. 2016 In : Biogeosciences. 13, 5, p. 1621-
1633 13 p.
Pipe-model ratio distributions and branch foliage biomass: differences between two sympatric
spruce species
Power, H., LeMay, V., Kneeshaw, D. & Berninger, F. 2 Jan 2016 In : Scandinavian Journal of Forest
Research. 31, 1, p. 8-18 11 p.
Crown characteristics slightly improve lumber mechanical property models for black spruce (Picea
mariana (Mill.) BSP)
Power, H., Franceschini, T., Schneider, R., Duchesne, I. & Berninger, F. Apr 2016 In : Forestry
Chronicle. 92, 2, p. 245-253 9 p.
137Cs distributions in soil and trees in forest ecosystems after the radioactive fallout - Comparison
study between southern Finland and Fukushima, Japan
Pumpanen, J., Ohashi, M., Endo, I., Hari, P., Bäck, J., Kulmala, M. & Ohte, N. Sep 2016 In : Journal of
Environmental Radioactivity. 161, p. 73-81 9 p.
14
Trade-Offs between Economic and Environmental Impacts of Introducing Legumes into Cropping
Systems
Reckling, M., Bergkvist, G., Watson, C. A., Stoddard, F. L., Zander, P. M., Walker, R. L., Pristeri, A.,
Toncea, I. & Bachinger, J. 23 May 2016 In : Frontiers in Plant Science. 7, 15 p., 669
A cropping system assessment framework-Evaluating effects of introducing legumes into crop
rotations
Reckling, M., Hecker, J-M., Bergkvist, G., Watson, C. A., Zander, P., Schlaefke, N., Stoddard, F. L.,
Eory, V., Topp, C. F. E., Maire, J. & Bachinger, J. May 2016 In : European Journal of Agronomy. 76, p.
186-197 12 p.
Resinogalea humboldtensis gen. et sp. nov., a new resinicolous fungus from New Caledonia,
placed in Bruceomycetaceae fam. nova (Ascomycota)
Rikkinen, J., Beimforde, C., Seyfullah, L., Perrichot, V., Schmidt, K. & Schmidt, A. Jun 2016 In : Annales
Botanici Fennici. 53, 3-4, p. 205–215 11 p.
Axillary buds are dwarfed shoots that tightly regulate GA pathway and GA-inducible 1,3-beta-
glucanase genes during branching in hybrid aspen
Rinne, P. L. H., Paul, L. K., Vahala, J., Kangasjärvi, J. & van der Schoot, C. Nov 2016 In : Journal of
Experimental Botany. 67, 21, p. 5975-5991 17 p.
Diurnal patterns in Scots pine stem oleoresin pressure in a boreal forest
Rissanen, K. A., Hölttä, T. S., Vanhatalo, A. M., Aalto, J. A., Nikinmaa, E. H., Rita, H. J. & Bäck, J. K.
2016 In : Plant, Cell and Environment. 39, 3, p. 527-538 12 p.
Methylophaga and Hyphomicrobium can be used as target genera in monitoring saline water
methanol-utilizing denitrification
Rissanen, A. J., Ojala, A., Dernjatin, M., Jaakkola, J. & Tiirola, M. Dec 2016 In : Journal of Industrial
Microbiology and Biotechnology. 43, 12, p. 1647-1657 11 p.
Vertical and seasonal dynamics of fungal communities in boreal Scots pine forest soil
Santalahti, M., Sun, H., Jumpponen, A., Pennanen, T. & Heinonsalo, J. Aug 2016 In : FEMS
Microbiology Ecology. 92, 11, 12 p., 170
The PLETHORA gene regulatory network guides growth and cell differentiation in Arabidopsis
roots
Santuari, L. , Sanchez-Perez, G. F. , Luijten, M. , Rutjens, B. , Terpstra, I. , Berke, L. , Gorte, M. ,
Prasad, K. , Bao, D. , Timmermans-Hereijgers, J. L. P. M. , Maeo, K. , Nakamura, K. , Shimotohno, A. ,
Pencik, A. , Novak, O. , Ljung, K. , van Heesch, S. , de Bruijn, E. , Cuppen, E. , Willemsen, V. & 6 others
Mähönen, A. P., Lukowitz, W., Snel, B., de Ridder, D., Scheres, B. & Heidstra, R. 2016 In : Plant Cell.
28, 12, p. 2937-2951 15 p.
15
Neglecting diurnal variations leads to uncertainties in terrestrial nitrous oxide emissions
Shurpali, N. J., Rannik, U., Jokinen, S., Lind, S., Biasi, C., Mammarella, I., Peltola, O., Pihlatie, M.,
Hyvonen, N., Raty, M., Haapanala, S., Zahniser, M., Virkajarvi, P., Vesala, T. & Martikainen, P. J. 9
May 2016 In : Scientific Reports. 6, 9 p., 25739
Reactive Oxygen Species in the Regulation of Stomatal Movements
Sierla, M., Waszczak, C., Vahisalu, T. & Kangasjärvi, J. Jul 2016 In : Plant Physiology. 171, 3, p. 1569-
1580 12 p.
MultiSite Gateway-Compatible Cell Type-Specific Gene-Inducible System for Plants
Siligato, R., Wang, X., Yadav, S. R., Lehesranta, S., Ma, G., Ursache, R., Sevilem, I., Zhang, J., Gorte,
M., Prasad, K., Wrzaczek, M., Heidstra, R., Murphy, A., Scheres, B. & Mähönen, A. P. Feb 2016 In :
Plant Physiology. 170, 2, p. 627-641 15 p.
Intra-annual variability of wood formation and delta C-13 in tree-rings at Hyytiälä, Finland
Soudant, A., Loader, N. J., Bäck, J., Levula, J. & Kljun, N. 15 Aug 2016 In : Agricultural and Forest
Meteorology. 224, p. 17-29 13 p.
LAKE 2.0: A model for temperature, methane, carbon dioxide and oxygen dynamics in lakes
Stepanenko, V., Mammarella, I., Ojala, A. K., Miettinen, H. M., Lykosov, V. N. & Vesala, T. V. 2016 In :
Geoscientific Model Development. 9, 5, p. 1977-2006 30 p.
Dominant Tree Species and Soil Type Affect the Fungal Community Structure in a Boreal Peatland
Forest
Sun, H., Terhonen, E., Kovalchuk, A., Tuovila, H., Chen, H., Oghenekaro, A. O., Heinonsalo, J., Kohler,
A., Kasanen, R., Vasander, H. & Asiegbu, F. O. May 2016 In : Applied and Environmental
Microbiology. 82, 9, p. 2632-2643 12 p.
Bacterial community structure and function shift across a northern boreal forest fire
chronosequence
Sun, H., Santalahti, M., Pumpanen, J., Köster, K., Berninger, F., Raffaello, T., Asiegbu, F. O. &
Heinonsalo, J. 30 Aug 2016 In : Scientific Reports. 6, 12 p., 32411
Peroxidase-Generated Apoplastic ROS Impair Cuticle Integrity and Contribute to DAMP-Elicited
Defenses
Survila, M., Davidsson, P. R., Pennanen, V., Kariola, T., Broberg, M., Sipari, N., Heino, P. & Palva, E. T.
23 Dec 2016 In : Frontiers in Plant Science. 7, 16 p., 1945
Assessment of genetic diversity in Nordic timothy (Phleum pratense L.)
Tanhuanpää, P., Erkkilä, M., Kalendar, R., Schulman, A. H. & Manninen, O. 26 Apr 2016 In : Hereditas.
153, 10 p., UNSP 5
Inhibition of phytopathogens by fungal root endophytes of Norway spruce
Terhonen, E., Sipari, N. & Asiegbu, F. O. Aug 2016 In : Biological Control. 99, 8, p. 53-63 11 p.
16
Ericoid roots and mycospheres govern plant-specific bacterial communities in boreal forest humus
Timonen, S. S., Sinkko, H-M., Sun, H., Sietiö, O-M., Rinta-Kanto, J. M., Kiheri, H. E. & Heinonsalo, E. J.
2016 In : Microbial Ecology. Online
Evolutionary and Epidemiological Implications of Multiple Infection in Plants
Tollenaere, C., Susi, H. & Laine, A-L. Jan 2016 In : Trends in Plant Science. 21, 1, p. 80-90 11 p.
Mixed infections of four viruses, the incidence and phylogenetic relationships of Sweet potato
chlorotic fleck virus (Betaflexiviridae) isolates in wild species and sweetpotatoes in Uganda and
evidence of distinct isolates in East Africa
Tugume, A., Mukasa, S. B. & Valkonen, J. P. T. 2016 In : PLoS One. 11, 12, 27 p., e0167769
A novel sweet potato potyvirus open reading frame (ORF) is expressed via polymerase slippage
and suppresses RNA silencing
Untiveros, M., Olspert, A., Artola, K., Firth, A. E., Kreuze, J. F. & Valkonen, J. P. T. Sep 2016 In :
Molecular Plant Pathology. 17, 7, p. 1111-1123 13 p.
Physiological and transcriptional responses of two contrasting Populus clones to nitrogen stress
Wang, X., Li, X., Zhang, S., Korpelainen, H. & Li, C. May 2016 In : Tree Physiology. 36, 5, p. 628-642 15
p.
Isolation and characterization of resident yeasts from the phylloplane of Arabidopsis thaliana
Wang, K., Sipilä, T. P. & Overmyer, K. L. Dec 2016 In : Scientific Reports. 6, 13 p., 39403
Peroxidases bound to the growing lignin polymer produce natural like extracellular lignin in a cell
culture of Norway spruce.
Warinowski, T., Koutaniemi, S., Kärkönen, A., Sundberg, I., Toikka, M., Simola, L. K., Kilpeläinen, I. &
Teeri, T. 18 Oct 2016 In : Frontiers in Plant Science. 7, 12 p., 1523
A SNP-based consensus genetic map for synteny-based trait targeting in faba bean (Vicia faba L.)
Webb, A., Cottage, A., Wood, T., Khamassi, K., Hobbs, D., Gostkiewicz, K., White, M., Khazaei, H., Ali,
M., Street, D., Duc, G., Stoddard, F. L., Maalouf, F., Ogbonnaya, F. C., Link, W., Thomas, J. &
O'Sullivan, D. M. Jan 2016 In : Plant biotechnology journal. 14, 1, p. 177-185 9 p.
Viral RNase3 Co-Localizes and Interacts with the Antiviral Defense Protein SGS3 in Plant Cells
Weinheimer, I., Haikonen, T., Ala-Poikela, M., Moser, M., Streng, J., Rajamaki, M-L. & Valkonen, J. P.
T. 8 Jul 2016 In : PLoS One. 11, 7, 16 p., 0159080
iTRAQ-based quantitative proteomic analysis gives insight into sexually different metabolic
processes of poplars under nitrogen and phosphorus deficiencies
Zhang, S., Zhou, R., Zhao, H., Korpelainen, H. & Li, C. Feb 2016 In : Proteomics (Weinheim). 16, 4, p.
614-628 15 p.
17
Evolutionary Co-option of Floral Meristem Identity Genes for Patterning of the Flower-like
Asteraceae Inflorescence
Zhao, Y., Zhang, T., Broholm, S. K., Tähtiharju, S., Mouhu, . K., Albert, V. A., Teeri, T. H. & Elomaa, P. 5
Jul 2016 In : Plant Physiology. 172, 1, p. 284-296 13 p.
Different leaf cost-benefit strategies of ferns distributed in contrasting light habitats of sub-
tropical forests
Zhu, S-D., Li, R-H., Song, J., He, P-C., Liu, H., Berninger, F. & Ye, Q. Mar 2016 In : Annals of Botany.
117, 3, p. 497-506 10 p.
A2 Reviews in Scientific Journals
ROS signalling in a destabilised world: A molecular understanding of climate change
Carmody, M., Waszczak, C., Idänheimo, N., Saarinen, T. & Kangasjarvi, J. 20 Sep 2016 In : Journal of
Plant Physiology. 203, p. 80-94 15 p.
Plant vascular development: from early specification to differentiation
De Rybel, B., Mähonen, A. P., Helariutta, Y. & Weijers, D. Jan 2016 In : Nature Reviews. Molecular
Cell Biology. 17, 1, 11 p.
Pan-Eurasian Experiment (PEEX): towards a holistic understanding of the feedbacks and
interactions in the land–atmosphere–ocean–society continuum in the northern Eurasian region
Lappalainen, H. K. , Kerminen, V-M. , Petäjä, T. T. , Kurten, T. C. , Baklanov, A. , Bäck, J. K. , Vihma, T. ,
Arnold, S. R. , Janhunen, J. A. , Juhola, S. K. , Järvi, L. J. , Järvinen, H. J. , Kieloaho, A-J. S. , Kujansuu, J.
T. , Kukkonen, I. T. , Duplissy, E-M. , Laaksonen, A. , Laurila, T. , Lihavainen, H. , Buenrostro Mazon, S.
N. & 11 others Moiseev, D., Ojala, A. K., Pihlatie, M. K., Pumpanen, J. S., Sipilä, M. J., Tynkkynen, V-P.,
Viisanen, Y., Vesala, T. V., Hari, P. K. J., von Zilitinkevich, S. & Kulmala, M. T. Apr 2016 In :
Atmospheric Chemistry and Physics. 16, 22, p. 14421-14461 41 p.
Infectious Disease Dynamics in Heterogeneous Landscapes
Parratt, S. R., Numminen, S. E. & Laine, A-L. 2016 In : Annual Review of Ecology, Evolution and
Systematics. 47
Understanding the ecology and evolution of host-parasite interactions across scales
Penczykowski, R. M., Laine, A-L. & Koskella, B. Jan 2016 In : Evolutionary Applications. 9, 1, p. 37-52
16 p.
Plant PARPs, PARGs and PARP-like Proteins
Vainonen, J. P., Shapiguzov, A., Vaattovaara, A. & Kangasjarvi, J. 2016 In : Current Protein and
Peptide Science. 17, 7, p. 713-723 11 p.
Grain legume decline and potential recovery in European agriculture: a review
Zander, P., Amjath-Babu, T. S., Preissel, S., Reckling, M., Bues, A., Schlaefke, N., Kuhlman, T.,
Bachinger, J., Uthes, S., Stoddard, F., Murphy-Bokern, D. & Watson, C. Jun 2016 In : Agronomy for
Sustainable Development. 36, 2, 20 p., 26
18
A3 Contributions to book/other compilations (refereed)
Applied mathematics in genetic resources: Toward a synergistic approach combining innovations
with theoretical aspects
Bari, A., Chaubey, Y. P., Sillanpää, M. J., Stoddard, F. L., Damania, A. B., Alaoui, S. B. & Mackay, M. Jan
2016 Applied Mathematics and Omics to Assess Crop Genetic Resources for Climate Change Adaptive
Traits. Bari, A., Damania, A. B., Mackay, M. & Dayanandan, S. (eds.). Oxford: CRC Press, Taylor &
Francis Group, p. 109-126 18 p.
Developing a crop wild relative conservation strategy for Finland
Fitzgerald, H., Korpelainen, H. & Veteläinen, M. 2016 Enhancing Crop Genepool Use: Capturing wild
relative and landrace diversity for crop improvement. Maxted, N., Dulloo, M. & Ford-Lloyd, B. (eds.).
Wallingford, UK: CABI Publishing, p. 206-216 11 p.
Comparative population genetics of red alga occupying different salinity conditions
Korpelainen, H. 2016 Seaweed phylogeography: Adaptation and Evolution of Seaweeds under
Environmental Change. Hu, Z-M. & Fraser, C. (eds.). Dordrecht: Springer, p. 331-344 14 p.
Genome size and the role of transposable elements.
Schulman, A. H. 30 Mar 2016 Genetics and Genomics of Brachypodium. Vogel, J. P. (ed.). Springer
International Publishing AG, p. 81-106 26 p. (Plant Genetics and Genomics: Crops and Models; vol.
18)
Willi Hennig’s legacy in the Nordic countries
Seberg, O., Ekrem, T., Hyvönen, J. T. & Sundberg, P. Jul 2016 The Future of Phylogenetic Systematics:
The Legacy of Willi Hennig. Williams, D. (ed.). London: Cambridge University Press, p. 31-69 39 p. 3.
(The Systematics Association Special Volume Series)
Starch: chemistry
Stoddard, F. L. Jan 2016 Encyclopedia of Food Grains: Volume 2: nutrition and food grains. Wrigley,
C., Corke, H., Seetharaman, K. & Faubion, J. (eds.). 2 ed. Oxford, UK: Oxford: Academic Press, Vol. 2,
p. 174-180 7 p.
Exploiting germplasm resources for climate-change adaptation in faba bean
Stoddard, F. L., Khazaei, H. & Belachew, K. Y. Jan 2016 Applied Mathematics and Omics to Assess
Crop Genetic Resources for Climate Change Adaptive Traits. Bari, A., Damania, A. B., Mackay, M. &
Dayanandan, S. (eds.). Oxford: CRC Press, Taylor & Francis Group, p. 207-214 8 p.
Transmission of the viruses commonly detected in sweetpotatoes and wild species of
Convolvulaceae in East Africa: many gaps to fill.
Tugume, A. K., Mukasa, S. B. & Valkonen, J. P. T. 2016 Vector-Mediated Transmission of Plant
Pathogens. Brown, J. K. (ed.). St. Paul, Minnesota: American Phytopathological Society, p. 447-452 6
p.
19
A4 Articles in conference publications (refereed)
Raspberry root frost hardiness
Palonen, L. P., Tommila, T. K. & Rantanen, M. M. M. 2016 In : Acta Horticulturae. 1133, p. 239-246 8
p., 37
Cropping potential in raspberry long cane plants as affected by the number of canes
Palonen, L. P., Karhu, S. & Pohjola, M. 2016 In : Acta Horticulturae. 1133, p. 275-282 8 p., 43
B1 Unrefereed Journal Articles
Book review: Thinking, Fast and Slow (by Daniel Kahneman)
Aphalo, P. J. 1 May 2016 In : UV4Plants Bulletin. 2016, 1, p. 43-44 2 p.
Measuring solar UV-B: why is it so difficult?
Aphalo, P. J. 1 May 2016 In : UV4Plants Bulletin. 2016, 1, p. 21-27 7 p.
The r4photobiology suite: sun angles and day length
Aphalo, P. J. 1 May 2016 In : UV4Plants Bulletin. 2016, 1, p. 29-39 11 p.
A Multiscale Approach to Plant Disease Using the Metacommunity Concept
Borer, E. T., Laine, A-L. & Seabloom, E. W. 2016 In : Annual Review of Phytopathology. 54, p. 397-418
22 p.
What the population genetic structures of host and pathogen tell us about disease evolution
Croll, D. & Laine, A-L. Nov 2016 In : New Phytologist. 212, 3, p. 537-539 3 p.
Focusing on TERMINAL FLOWER 1 (TFL1) regulation
Hytönen, T. P. Dec 2016 In : Journal of Experimental Botany. Flowering newsletter, 14.12.2016
Onko meillä riittävästi geenivaroja tulevaisuuden ruoantuotannon turvaamiseen?
Korpelainen, H. S. 2016 In : Luonnon Tutkija. 2016, 3, p. 95
Disease resistance: Not so costly after all
Laine, A-L. Aug 2016 In : Nature plants. 2, 8, 2 p., 16121
Ilkka Hanski (1953–2016): Population ecologist who modeled how species cope with habitat loss.
Laine, A-L. 2016 In : Nature. 534, 7606, p. 180 1 p.
B2 Contributions to book/other compilations (non-refereed)
Quantification of UV-radiation
Aphalo, P. J. 2016 The role of UV-B radiation in plant growth and development. Jordan, B. (ed.). 1 ed.
CABI Publishing, Chapter 2
Värien puutarhassa: In the garden of colours
Rikkinen, J. Oct 2016 Luonnonystävän Vuosikirja 2017. Kirkkala, S. (ed.). Keuruu: Otavamedia, 4 p.
20
B3 Unrefereed articles in conference proceedings
Spatial tissue-specific profiling of O-acetylglucuronoxylans in birch stem.
Chong, S-L., Maaheimo, H., Immanen, J. J. M., Helariutta, Y. E. & Tenkanen, T. M. 2016 p. 17-20 4 p.
WATER RELATIONS IN SILVER BIRCH DURING THE BIRCH SAP EXUDATION PERIOD
Dominguez Carrasco, M. D. R., Aalto, J., Juurola, E. M., Nikinmaa, E. H., Bäck, J. K. & Hölttä, T. S. 1 Oct
2016 In : Report Series in Aerosol Science. 189, p. 134-136 3 p.
Soil, branch and ecosystem scale fluxes of carbonyl sulfide over a boreal forest: A new method for
estimating GPP
Erkkilä, K-M., Kooijmans, L., Sun, W., Aalto, J. A., Maseyk, K., Seibt, U., Mammarella, I. & Vesala, T. V.
2016 In : Report Series in Aerosol Science. 189, p. 153-155
Comparison of the above canopy and the forest floor methane flux modelled by soil water content
Halmeenmäki, L. E. K., Haikarainen, I. P., Peltola, O. P. & Pihlatie, M. K. Oct 2016 In : Report Series in
Aerosol Science. 189, p. 174-176
Atmosphere-land-lake carbon cycle provides possibilities for economic studies
Heiskanen, J. J., Mammarella, I., Ojala, A. K. & Vesala, T. V. 2016 In : Report Series in Aerosol Science.
180, p. 187-188 2 p.
A simple proxy for the concentrations of monoterpenes and their oxidation products in boreal
forest
Kontkanen, J. S. S., Bäck, J. K., Paasonen, P. J., Petäjä, T. T. & Kulmala, M. T. 2016 In : Report Series in
Aerosol Science. 180
Tree water relations during winter
Lintunen, A. M., Paljakka, T. V. S., Lindfors, L. O. & Hölttä, T. S. 2016 In : Report Series in Aerosol
Science. 180, p. 309-312 4 p.
Greenhouse gases, micrometeorology and biogeochemical cycles research team: overview of
scientific activities
Mammarella, I. , Järvi, L. J. , Alekseychik, P. K. , Auvinen, M. J. S. , Erkkilä, K-M. , Grönholm, T. ,
Heiskanen, J. J. , Keronen, P. I. R. , Kolari, P. P. , Kurppa, M. L. V. , Li, X. , Peltola, O. P. , Provenzale, M.
, Raivonen, M. T. , Rannik, U. , Rantala, P. A. I. , Salmon, Y. L. B. , Taipale, R. , Heimann, M. , Laurila, T.
& 4 others Pulliainen, J., Ojala, A. K., Bäck, J. K. & Vesala, T. V. 2016 In : Report Series in Aerosol
Science. 189, p. 41-44
Decomposing processes regulate BVOC emissions from boreal soil during fall
Mäki, M. J., Heinonsalo, E. J., Hellén, H. & Bäck, J. K. 2016 In : Report Series in Aerosol Science. 180,
p. 342-346
Ground vegetation is a net sink of soil emitted isoprenoids in boreal Scots pine forest
Mäki, M. J., Heinonsalo, E. J., Hellén, H. & Bäck, J. K. 2016 In : Report Series in Aerosol Science. 182,
p. 58-59 2 p.
21
Seasonal and annual dynamics of VOC emissions from boreal forest soil
Mäki, M. J., Heinonsalo, E. J., Hellen, H., Pumpanen, J., Vesala, T. V. & Bäck, J. K. 2016 In : Report
Series in Aerosol Science. 189, p. 349-352 4 p.
Integrated aquatic studies bases a continuously operated measuring platform: possibilities and
challenges.
Ojala, A. K., Mammarella, I., Bäck, J. K., Pumpanen, J. S., Rantakari, M. M., Miettinen, H., Heiskanen,
J. J., Peltomaa, E. T., Erkkilä, K-M., Provenzale, M., Hari, P. K. J., Vesala, T. V. & Kulmala, M. T. 2016 In
: Report Series in Aerosol Science. 180, p. 359-362 4 p.
EFFECTS OF RADIATION TRANSMITTANCE THROUGH CLOUDS ON GROSS PRIMARY PRODUCTION
Paasonen, P. J., Tikkanen, O-P., Asmi, A. J., Heimann, M., Vesala, T. V., Kerminen, V-M., Bäck, J. K. &
Kulmala, M. T. 2016 In : Report Series in Aerosol Science. 189, p. 358-361 4 p.
Study of the lacustrine phytoplankton productivity dependence on solar radiation, on the basis of
direct high-frequency measurements
Provenzale, M., Ojala, A. K., Heiskanen, J. J., Erkkilä, K-M., Mammarella, I., Hari, P. K. J. & Vesala, T. V.
2016 In : Geophysical Research Abstracts. 18, EGU2016-11663
A combination of source and sink effects determine the growth of Scots pine organs in varying
weather conditions
Schiestl-Aalto, P. P., Kulmala, L-M. & Mäkelä-Carter, A. A. 12 Oct 2016
C1 Published scientific monograph
Chapter 6: Plant responses to fluctuating UV environments
Barnes, P. W., Robson, T. M., Tobler, M. A., Bottger, I. N. & Flint, S. D. 1 Dec 2016 25 p.
Tunnista Puu ja Puuaine
Fagerstedt, K. V., Pellinen, K., Timonen, T. J. & Saranpää, P. 2016 [Helsinki]: Metsäkustannus. 180 p.
UV-B induced morphological changes; an enigma
Jansen, M., Urban, O., Klem, K. & Robson, T. M. 1 Dec 2016 41 p.
D1 Articles in Professional Journals
Liberibakteeri uhkaa porkkanaa
Nissinen, A., Haapalainen, M. L., Pirhonen, M. U. & Virtanen, A. 2016 In : Puutarha & kauppa. 2016,
1, p. 14-15 2 p.
Vadelmalajikkeiden välillä eroja juuriston kylmänkestävyydessä
Palonen, P., Tommila, T. & Rantanen, M. 14 Jan 2016 In : Puutarha & kauppa. 20, 1, p. 10-11 2 p.
Riittävästi vilutusta vadelman pitkäversoille
Palonen, P., Karhu, S. & Pohjola, M. 11 Feb 2016 In : Puutarha & kauppa. 2016, 3, p. 26-27 2 p.
22
Hyvä nurmirehusato tehostaa tilan toimintaa
Seppänen, M. M.9 Dec 2016In : Jyvällä Visio.p. 4
Nurmilaukan uusi löytöpaikka Espoossa (U)
Åström, H. M. & Haeggström, C. A. 2016 In : Lutukka. 32, 3, p. 86-87 2 p.
D2 Article in professional hand or guide book or in a professional data system, or text book
material
Haastattelututkimus molekyylibiotieteellisiltä aloilta valmistuneiden tohtoreiden kokemuksista
koulutuksen ja työelämän vastaavuuksista.
Himanen, K. I. H. 2016 Teaching in Life Sciences: Current practices and development. Vol. 2, p. 33-51
19 p. (Teaching in Life Sciences: Current practices and development; vol. 2)
D3 Articles in Professional Conference Proceedings
Differences in Nitrous Oxide emissions among faba bean (Vicia faba L.) cultivars in a boreal climate
Lizarazo Torres, C. I., Esfahani, R., Simojoki, A. J. & Stoddard, F. L. 5 Sep 2016 p. 29-30
D4 Published Development or Research Report
Selvitys katujen suolauksen vaikutuksista katupuihin Helsingissä
Riikonen, A., Hölttä, T., Paljakka, T. & Nikinmaa, E. 27 Apr 2016 Helsinki: Helsingin kaupungin
rakennusvirasto. 24 p. (Helsingin kaupungin rakennusviraston julkaisuja; vol. 2016, no. 5)
Vartioharjuntien kokeilupuiden menestymisseuranta
Riikonen, A., Linden, L., Paljakka, T., Hölttä, T., Lintunen, A. & Nikinmaa, E. 2016 Helsinki: Helsingin
kaupungin rakennusvirasto. 36 p. (Helsingin kaupungin rakennusviraston julkaisuja; no. 2016:6)
E1 Popular Article, Newspaper Article
Miksi leikkokukkavirkisteet sisältävät sokeria?
Fagerstedt, K. V. 2016 In : Viherpiha. 2016, 1, p. 84 1 p.
Miksi valkokirjavan kasvin pistokkaat juurtuvat heikommin kuin vihreän lajikkeen?
Fagerstedt, K. V. 2016 In : Viherpiha. 2016, 2, p. 83 1 p.
Mistä pistokkaaksi otettu oksanpätkä tietää, kumpan päähän kuuluu muodostaa juuret?
Fagerstedt, K. V. Mar 2016 In : Viherpiha. 2016, 3, p. 83 1 p.
Nouseeko oksa korkeammalle?
Fagerstedt, K. V. 2016 In : Viherpiha. 2016, 4, p. 84 1 p.
Miten on mahdollista, että puu elää, vaikka sen runko olisi ontto?
Fagerstedt, K. V. 2016 In : Viherpiha. 2016, 5, p. 81 1 p.
23
Miksei kaktus vuoda?
Fagerstedt, K. V. 2016 In : Viherpiha. 2016, 6, p. 80 1 p.
Miten ensimmäinen kasvin siemen tehtiin?
Fagerstedt, K. V. 2 Sep 2016 In : Helsingin Sanomat. 2016, p. B11 1 p.
Maatuvien lehtien tuoksuaineet?
Fagerstedt, K. V. 2016 In : Viherpiha. 2016, 10, p. 85 1 p.
Miten kasvi estää hedelmöityksen?
Fagerstedt, K. V. 2016 In : Viherpiha. 2016, 11, p. 84 1 p.
Paljasjuuristen taimien kasvuunlähtö?
Fagerstedt, K. V. 2016 In : Viherpiha. 2016, 9, p. 81 1 p.
Miksi puissa on pihkaa?
Fagerstedt, K. V. 2 Dec 2016 In : Helsingin Sanomat. 2016, p. B13 1 p.
Timotein koostumus suurennuslasin alla
Kärkönen, A. K., Seppänen, M. M., Isolahti, M., Tapanila, T., Laakso, T., Hyrkäs, M., Virkajärvi, P. &
Saranpää, P. 2016 In : Nauta. 46, 1, p. 46-47 2 p.
Ruokaketjun uudelleen suuntaus – voiko kestävyystiede auttaa?: Blog text in campaign
Lindström, A. K. & Stoddard, F. L. 18 Oct 2016 In : Luonnonvara- ja biotalouden tutkimus.
Nostetta suomalaiseen vesitutkimukseen
Ojala, A. K.Dec 2016In : energiaopas.net.p. 61 p.
Ligniinissä lepää lupaus
Väisänen, E., Laitinen, T., Gauthier, A. & Kärkönen, A. 5 Dec 2016 In : Maaseudun Tulevaisuus.
5.12.2016, p. 12 1 p.
Ligniini tukee ja mahdollistaa vedenkuljetuksen
Väisänen, E., Laitinen, T., Gauthier, A. & Kärkönen, A. 5 Dec 2016 In : Maaseudun Tulevaisuus.
5.12.2016, p. 12 1 p.
E2 Popular Monograph
Ottakaa tämä vakavasti!: Asiantuntijanäkemyksiä ilmastonmuutoksen vaikutuksista
Bäck, J. K., Damski, J., Haavisto, P., Kauppi, L., Latola, K., Liski, M., Lund, P., Pantsar, M., Pekkanen, J.,
Tynkkynen, O., Varis, O. & Walls, M. 31 Oct 2016 Helsinki: Sitra. 34 p.
Suomalaiset perinnekasvit, 2. painos (Traditional herbaceous garden ornamentals in Finland, 2.
ed.)
Rikkinen, J. Jan 2016 Otava. 208 p.
24
G5 Doctoral theses, articles
Molecular insights into a putative potyvirus RNA encapsidation pathway and potyvirus particles as
enzyme nano-carriers
Besong, J. (Mäkinen, K.M.); 14 June 2016:
Dynamic variations in bark hydraulics – understanding whole tree processes and its linkage to bark
hydraulic function and structure
Chan, T. (Bäck, J.K.); 4 Nov 2016
Flavonoid metabolomics in Gerbera hybrida and elucidation of complexity in the flavonoid
biosynthetic pathway
El-Sayed Bashandy, H. (Teeri, T.); 23 Jan 2016:
Auxin and cytokinin interactions regulate primary vascular patterning during root development in
Arabidopsis thaliana
El-Showk, S. (Helariutta, Y.); 30 May 2016:
The interaction of auxin and cytokinin signalling regulates primary root procambial patterning,
xylem cell fate and differentiation in Arabidopsis thaliana
Help-Rinta-Rahko, H. (Helariutta, Y.); 22 April 2016:
The killer of Socrates exposed – Coniine in the plant kingdom
Hotti, H. (Teeri, T.H.); 14 Oct 2016
Linking water and carbon cycles: modeling latent heat exchange and dissolved organic carbon
Kasurinen, V. (Berninger, F. & Ojala, A.K.); 8 April 2016
Genetic and environmental control of flowering in wild and cultivated strawberries
Koskela, E. (Hytönen, T.P. & Elomaa, P.); 2 Sept 2016
Helper component-proteinase and coat protein are involved in the molecular processes of Potato
virus A translation and replication
Lõhmus, A. (Mäkinen, K.M.); 18 Nov 2016
Molecular analysis of the interaction between white rot pathogen (Rigidoporus microporus) and
rubber tree (Hevea brasiliensis)
Oghenekaro, A. (Asiegbu, F.O.); 15 Jan 2016:
Some ecosystem service aspects of young street tree plantings
Riikonen, A. (Elomaa, P.); 17 Nov 2016
Hormonal regulation of primary and secondary growth in the root of Arabidopsis thaliana 17th
June
Siligato, R. (Mähönen, A.P.); 17 June 2016
25
Apoplastic ROS and transcriptional response in plant stress signaling
Vaahtera, L. (Brosché, M.); 23 Sept 2016
I2 ICT programs or applications
Photobiology: An R package
Aphalo, P. J.1 Feb 2016
Photobiology Wavebands: An R package
Aphalo, P. J.3 Feb 2016
Photobiology InOut: An R package
Aphalo, P. J.24 May 2016
Photobiology Plants: An R package
Aphalo, P. J.3 Aug 2016
Photobiology LEDs: An R package
Aphalo, P. J.23 Oct 2016
Photobiology Lamps: An R package
Aphalo, P. J.23 Oct 2016
ggspectra: An R package
Aphalo, P. J.6 Feb 2016
ggpmisc: An R package
Aphalo, P. J.30 Jan 2016
26
International seminars and visits
Keynote & Invited Lectures/Talks/Seminars
Roundtable: Light in science, art and image
Aphalo, P.
10 Feb 2016
Ultimate vs. proximate questions: Can plants use UVB to predict the future?
Aphalo, P.
31 May 2016
The role of information in anticipatory responses
Aphalo, P.
28 Jun 2016
37th New Phytologist Symposium Elomaa, P. 15 May 2016 → 19 May 2016
Molecular Encoding of Specificity in Plant Processes Helariutta, Y. April 2016
International Conference on Plant Meristem Biology Helariutta, Y. June 2016
International Plant Growth Substances Association Conference Helariutta, Y. June 2016
Invited talk at Shandong University
Helariutta, Y.
Jun 2016
Annual Meeting of the Society for Experimental Biology 2016 Helariutta, Y. 4 July 2016 → 7 July 2016
International Conference on Arabidopsis Research Helariutta, Y. July 2016
Plant Biology 2016 Helariutta, Y. July 2016
27
Annual Meeting of Botanical Society of Japan Helariutta, Y. Sept 2016
SWEDBO 2016 Helariutta, Y. Oct 2016
Unconventional Proteins and Membranes Traffic (UPMT) meeting Helariutta, Y. Oct 2016
Invited talk at ETHZ
Helariutta, Y.
Nov 2016
The XI Finnish Plant Science Days 2016 Himanen, K. 25 May 2016 → 26 May 2016
2nd International Plant and Algal Phenomics meeting Himanen, K. 4 Sept 2016 → 7 Sept 2016
Biotron inauguration symposium Himanen, K. 7 Nov 2016
Genetic control of reproductive development and its natural variation in strawberry
Hytönen, T.
8 Nov 2016
How to breed novel flowering traits in strawberry?
Hytönen, T.
2016
Research seminar series, Max Planck institute Köln
Kangasjärvi, J.
24 Feb 2016
ROS in the regulation of stomatal movements
Kangasjärvi, J.
29 Mar 2016 → 2 Apr 2016
ROS signalling and apoplast - organelle interactions
Kangasjärvi, J.
5 Sep 2016 → 10 Sep 2016
28
Abiotic stress and ROS in the regulation of stomatal movements
Kangasjärvi, J.
11 Oct 2016 → 15 Oct 2016
Wood Biopolymer Science for “New materials from trees”, Finnish-Swedish Join Summer School 2016 Kärkönen, A. 29 Aug 2016 → 2 Sept 2016
Currants and gooseberries, Cornell University, USA
Palonen, P.
9 Nov 2016
The European Geosciences Union (EGU) General Assembly 2016 Pihlatie, M. 17 April 2016 → 22 April 2016
Amber as a source of Mesozoic and Cenozoic cryptogams.
Rikkinen, J.
1 Aug 2016
Lichen-associated microfungi from European Palaeogene amber.
Rikkinen, J.
1 Aug 2016
Lichens in Palaeogene amber.
Rikkinen, J.
1 Aug 2016
Genotype diversity of Nostoc symbionts of Peltigera species in grassland and forest habitats of
Estonia.
Rikkinen, J. K.
2 Aug 2016
Symbiotically dispersing lichens as photobiont nurseries.
Rikkinen, J. (Invited speaker)
2 Aug 2016
Wine & Science -seminar
Robson, T. M.
1 Apr 2016
Canopy Ecology: Short Wavelength Light Cues Used by Plants
Robson, T. M.
24 May 2016
29
Optimising site-specific solar radiation modelling for its application in the horticultural,
agricultural and photonics industries
Robson, T. M.
1 Dec 2016
The spectrum of radiation penetrating deciduous forest canopies
Robson, T. M.
2016
Maataloustieteen päivät 2016 Stoddard, F. 12 Jan 2016 → 13 Jan 2016
Canadian Society for Agronomy Stoddard, F. 24 July 2016 → 26 July 2016
NIT-viljaverkon vuosikokous Stoddard, F. 9 Nov 2016
Suomen Viljateknikkojen Seuran vuosikokous Stoddard, F. 24 Nov 2016
Norwegian Plant Biology 2016 Wrzaczek, M. 15 June 2016 → 17 June 2016
Public Talks
Beyond Wood
Bäck, J.
23 May 2016
2016 Fuzhou Form of International Plant Pathology on virus-plant-insect interaction
Mäkinen, K.
21 Aug 2016 → 26 Aug 2016
TAMING PLANT VIRUSES - FUNDAMENTAL BIOLOGY TO BIONANOTECHNOLOGY
Mäkinen, K.
8 Nov 2016 → 10 Nov 2016
Lammi Biological Station Science Trail opening event
Robson, T. M.
9 Jun 2016
30
Lammi Science Trail Videos
Robson, T. M.
9 Sep 2016
International Hosted Seminars
ViPS Invited Plant Seminar: Youssef Belkhadir, GMI-Gregor Mendel Institute, Austria "Design
Principles and Self-Assembling Properties of the Extracellular Interactome in Arabidopsis".
13 Jan 2016
ViPS Invited Plant Seminar: Pam & Doug Soltis, Florida University, USA. "Big Data, Phylogeny, and
Plant Diversity" and "Big Data, Big Trees, and Using the Tree of Life".
10 Feb 2016
Special Plant Seminar: Dennis Mathews, University of New Hampshire, Durham, USA "The role of
cytokinin in root growth and development".
1 Mar 2016
ViPS Invited Plant Seminar: Corné Pieterse, Utrecht University, The Netherlands. "Hormonal
communication in the plant's social network".
16 Mar 2016
ViPS Invited Plant Seminar: Ellen Dorrepaal, Umeå University, Sweden. "Plant-soil interactions
driving arctic ecosystem feedbacks to winter and summer climate change".
13 Apr 2016
Special plant seminar: Niko Geldner, University of Lausanne, Switzerland. "The endodermis - a tale
of two cell types".
21 Apr 2016
ViPS Invited Plant Seminar: Marja Jalli, Natural Resources Institute Finland. "Plant breeding for
sustainability".
11 May 2016
Special plant seminar: Marta Ibanes Miguez, University of Barcelona, Spain. "Arabidopsis
stationary root growth and its variability".
30 May 2016
Special plant seminar: Phil Mullineaux, University of Essex, UK. "When chloroplasts talk to the
nucleus H2O2 is the language".
1 Jun 2016
ViPS Invited Plant Seminar: Graham Noctor, Institute of Plant Sciences Paris-Saclay, France.
"Oxidative stress and high CO2 in plant pathogenesis responses".
9 Jun 2016
31
Special plant seminar: Baishnab Tripathy, Jawaharlal Nehru University, India. "Genetic
manipulation of plants to minimize oxidative stress and enhance photosynthesis and plant
productivity".
14 Jun 2016
Special plant seminar: Bruno Müller, University of Zurich, Switzerland. "Cytokinin Sinks Define
Signaling-Patterning Landscapes in Morphogenesis".
16 Jun 2016
Special plant seminar: Richard Immink, Wageningen University, Netherlands. "Hot science: How
ambient temperature affects flowering time".
31 Aug 2016
Special plant seminar: Kazuyuki Kuchitsu, University of Tokyo, Japan. "Regulation of plant
development and stress responses by the ROS-calcium signaling network and autophagy".
13 Sep 2016
ViPS Invited Plant Seminar: Thomas Georg Roitsch (University of Copenhagen, Denmark).
"Assimilate partitioning in higher plants: importance for development, stress responses and
biotechnological applications".
14 Sep 2016
Special plant seminar: Philip M. Moullineaux, University of Essex, UK. "The roles of BBX32, HY5
and an elusive gene in controlling dynamic acclimation to sustained increases in light intensity".
22 Sep 2016
ViPS Invited Plant Seminar: Charles Melnyk, The Sainsbury Laboratory, UK. "When Two Make One:
Understanding How Plants Graft".
12 Oct 2016
Special plant seminar: Heribert Warzecha, Technische Universität Darmstadt, Germany. "How to
make novel plant natural products by metabolic engineering".
13 Oct 2016
Special plant seminar: Roderick Dewar, Research School of Biology, The Australian National
University, Canberra, Australia. "Macro-ecological patterns, chance and necessity".
3 Nov 2016
ViPS Invited Plant Seminar: Klaus Pillen, Martin-Luther-University, Germany. "Allele mining in
multi-parental populations of wheat and barley".
9 Nov 2016
Special plant seminar: Sylvie German-Retana, INRA Université de Bordeaux, France. "Potyvirus
adaptation to eIF4E-mediated resistance in crops".
17 Nov 2016
32
Special plant seminar: Anders Hafren, Swedish University of Agricultural Sciences (SLU), Uppsala
BioCenter. "Role of autophagy in plant virus infection".
18 Nov 2016
Special plant seminar: Karen McDonald, Department of Chemical Engineering, University of
California Davis, USA. "Transient production of cell wall degrading enzymes in plant hosts for
biofuels applications".
8 Dec 2016
ViPS Invited Plant Seminar: Janusz Zwiazek, University of Alberta, Canada. "Aquaporins and plants:
more than just water transport".
14 Dec 2016
International Hosted Visitors
Maria Albani, University of Cologne, Germany; 15 Sep 2016
Cyntia Ayala-González, Centro de Investigación y Asistencia en Tecnología y Diseño del Estado de
Jalisco, Mexico; Jan 2016 → Sep 2016
Paul W Barnes, Loyola University, New Orleans, USA; 3 Jul 2016 → 13 Jul 2016
Anette Becker, Justus Liebig University, Germany; 15 Sept 2016
Youssef Belkhadir, GMI-Gregor Mendel Institute, Austria; 13 Jan 2016
Thierry Candresse, INRA-Bordeaux, France; 2 Oct 2016 → 4 Oct 2016
Clare Casteel, University of California-Davis, USA; 7 Nov 2016 → 8 Nov 2016
Zongming Cheng, University of Tennessee, USA; 10 Nov 2016 → 14 Nov 2016
Roderick Dewar, Research School of Biology, The Australian National University, Canberra, Australia;
3 Nov 2016
Ellen Dorrepaal, Umeå University, Sweden; 13 Apr 2016
Guido Durian, University of Turku, Finalnd; 18 Aug 2016 → 23 Aug 2016
Duarte Figueiredo, SLU, Sweden; 17 Aug 2016 → 20 Aug 2016
Niko Geldner, University of Lausanne, Switzerland; 21 Apr 2016
Sylvie German-Retana, INRA Université de Bordeaux, France; 17 Nov 2016
Nathalie Gonzalez, INRA, France; 12 Dec 2016 → 16 Dec 2016
Anders Hafren, Swedish University of Agricultural Sciences (SLU), Uppsala BioCenter, Sweden; 18
Nov 2016
Nicola Giummarella, KTH Royal Institute of Technology, Stockholm, Sweden; 14 Nov 2016 → 16 Nov
2016
Marta Ibanes Miguez, University of Barcelona, Spain; 30 May 2016
Richard Immink, Wageningen University, Netherlands; 31 Aug 2016
Saijaliisa Kangasjärvi, University of Turku, Finland; ; 18 Aug 2016 → 23 Aug 2016
Markku Keinänen, University of Eastern Finland, Finland; 12 Dec 2016 → 16 Dec 2016
Anna Kicherer, Institute for Grapevine Breeding, Germany; 12 Dec 2016 → 16 Dec 2016
Kazuyuki Kuchitsu, University of Tokyo, Japan; 12 Sep 2016 → 13 Sep 2016
Katarzyna Kulikowska, Poland; 12 Aug 2016
33
Rajiv Kumar, National Institute for Interdisciplinary Science and Technology, India; 10 Oct 2016 → 11
Dec 2016
Takeshi Kurokura, Utsunomiya University, Tochigi, Japan; 29 Jul 2016 → 12 Aug 2016
Dennis Mathews, University of New Hampshire, Durham, USA; 1 Mar 2016
Charles Melnyk, The Sainsbury Laboratory, UK; 12 Oct 2016
Bruce McCune, Oregon State University, USA; Aug 2016
Karen McDonald, University of California Davis, USA; 7-11 Dec 2016
Phil Mullineaux, University of Essex, UK; 1 Jun 2016 & 22 Sept 2016
Bruno Müller, University of Zurich, Switzerland; 16 Jun 2016
Jakub Nezval, University of Ostrava, Czech Rebublic; 30 Oct 2016 → 12 Nov 2016
Graham Noctor, Institute of Plant Sciences Paris-Saclay, France; 9 Jun 2016
Moritz Nowack, VIB, Ghent, Belgium; 17 Aug 2016 → 19 Aug 2016
Klara Panzarova, PSI, Czech Republic; 12 Dec 2016 → 16 Dec 2016
Jouni Peltoniemi, Finnish Geospatial Research Institute, Finland; 12 Dec 2016 → 16 Dec 2016
Corné Pieterse, Utrecht University, The Netherlands; 16 Mar 2016
Klaus Pillen, Martin-Luther-University, Germany; 9 Nov 2016
Jeremy Pillet, University of Malaga, Spain; 16 Jun 2016 → 18 Jul 2016
David Posé, University of Malaga, Spain; 13 Sep 2016
Eetu Puttonen, Finnish Geospatial Research Institute, Finland; 12 Dec 2016 → 16 Dec 2016
Thomas G. Roitsch, University of Copenhagen, Denmark; 14 Sep 2016
Outi Savolainen, University of Oulu, Finland; 14 Sep 2016
Alexander Schmidt, Univeristy of Göttingen, Germany; Jul 2016
Paul Schulze-Lefert, Max-Planck Institute for Plant Breeding, Munich, Germany; 2 Oct 2016 → 4 Oct
2016
Pam & Doug Soltis, Florida University, USA; 5 Feb 2016 → 13 Feb 2016
Mengya Song, Chinese Academy of Sciences, Beijing, China; 1 Oct 2016 → 30 Nov 2016
Lukas Spichal, Palacký University, Czech Republic; 12 Dec 2016 → 16 Dec 2016
Steven Spoel, University of Edinburgh, Scotland; 17 Aug 2016 → 20 Aug 2016
Michael Thomas-Poulsen, University of Copenhagen, Denmark; 7 Nov 2016 → 8 Nov 2016
Baishnab C Tripathy, Jawaharlal Nehru University, New Delhi, India; 5 May 2016 → 14 Jul 2016
Esa Tyystjärvi, University of Turku, Finland; 13 Dec 2016
Rytas Vigalys, Duke University, USA; 2 Oct 2016 → 4 Oct 2016
Heribert Warzecha, Technische Universität Darmstadt, Germany; 13 Oct 2016
Arne Weinhold, Max-Planck Institute for Chemical Ecology, Jena, Germany; 7 Nov 2016 → 8 Nov
2016
Lei Yu, University of Oxford, UK; 1 Oct 2016 → 30 Nov 2016
Janusz Zwiazek, University of Alberta, Canada; 12 Dec 2016 → 16 Dec 2016
34
Visits to Scientific Institutes
ERC
Hytönen, T.
14 Jun 2016
KSU King Saud University
Kangasjärvi, J.
29 Mar 2016 → 2 Apr 2016
China Agricultural University, Beijing, China
Kangasjärvi, J.
11 Oct 2016 → 15 Oct 2016
Cornell University, College of Agricultural and Life Sciences, Horticulture Section
Palonen, P.
1 Sep 2016 → 30 Jun 2017
Province Sud : Direction de l'environnement - DENV
Rikkinen, J.
17 Sep 2016 → 3 Oct 2016
Taita Environmental Research and Resource Arc
Rikkinen, J
21 Oct 2016 → 2 Nov 2016
Museum für Naturkunde
Rikkinen, J.
11 Nov 2016
Botanischer Garten und Botanisches Museum Berlin-Dahlem
Rikkinen, J.
12 Nov 2016
Taita Environmental Research and Resource Arc
Rikkinen, J.
5 Dec 2016 → 12 Dec 2016
National Museums of Kenya, Nairobi
Rikkinen, J.
6 Dec 2016
Universidad Rey Juan Carlos, Madrid
Robson, T. M.
13 Mar 2016 → 18 Mar 2016
35
Université de Rouen
Robson, T. M.
4 Apr 2016 → 8 Apr 2016
Swedish University of Agricultural Sciences
Stoddard, F.
26 Oct 2016 → 27 Oct 2016
Latvian Agricultural University
Stoddard, F.
1 Dec 2016 → 2 Dec 2016
Research Centre for Eco-Environmental Sciences, Chinese Academy of Sciences
Vesala, T. V.
17 May 2016
36
Positions of trust
Editor of Research Journal
Journal of Experimental Botany Plant Physiology and Biochemistry
UV4Plants Bulletin
Peer reviewer of manuscripts for journals
Acta Agriculturae Scandinavica. Section B. Soil
and Plant Science
Acta Botanica Gallica
Agricultural and Forest Meteorology
Agronomy
Agronomy Research
Analytical Biochemistry
Applied Soil Ecology
Aquatic Living Resources
BMC Genomics
BioEssays
Biodiversity and Conservation
Biogeosciences
Biogeosciences Discussions
Biologia Plantarum
Biology and Fertility of Soils
Biomass & Bioenergy
Biotechnology Reports
Canadian Journal of Forest Research
Cladistics - the international journal of the
Willi Hennig Society
Conservation Genetics
Dosis
Environmental and Experimental Botany
Euphytica
European Journal of Agronomy
European Journal of Forest Research
European Journal of Horticultural Science
FEBS Letters
Forest Ecology and Management
Forest Pathology
Frontiers in Plant Science
Functional Plant Biology
Fungal Ecology
Heredity
Horticulture Research
Hydrology and Earth System Sciences
IForest
In Vitro Cellular & Developmental Biology -
Plant
International Journal of Molecular Sciences
International Journal of Molecular Sciences
(Online)
Journal of Ecology
Journal of Experimental Botany
Journal of Plant Growth Regulation
Journal of Plant Pathology
Journal of Plant Physiology
Journal of Plant Research
Lichenologist
Limnologica
Molecular Breeding
Molecular Ecology
Molecular Plant Pathology
Mycorrhiza
Nature Communications
Nature plants
New Phytologist
Notulae Scientia Biologicae
PLoS One
Philippine Agricultural Scientist
Palonen, P. (Reviewer)
Physiologia Plantarum
Phytochemistry
Plant Biology
Plant Cell
Plant Physiology
Plant Physiology and Biochemistry
37
Planta
Remote Sensing of Environment
Scientific Reports
Silva Fennica
SpringerPlus
The Bryologist
The Open Biotechnology Journal
38
Chair or member of organising committee for conferences, workshops, courses, seminars
14th Congress of the European Society for Agronomy
Control of reproductive development in plants-molecular, agricultural and ecological aspects
Current Challenges in Plant Phenotyping
Ecological Effect of UV radiation on plants
Field course on subarctic plants and vegetation in Kilpisjärvi, northern Finland
International Conference on Arabidopsis Research 2018
Metsät, vuodenaikaisvaihtelu ja ilmasto
New Plant Protein Foods
Plant Cell Walls
Plant-microbe interactions and molecular defence of plants
Plant-Pathogen Co-evolution
Protein purification and kinase activity in plants
Second International Legume Society Conference: Legumes for a Sustainable World
Signal transduction in plants
Societas Biologica Fennica Vanamo annual fall event 2016
The 8th IAL Symposium: Lichens in Deep Time
UV4Plants Training School
Workshop on Radiative Transfer Modelling
Expert or consultancy positions
The Matter of Light and Fuchsia
Aphalo, P. J.
28 Feb 2016
Measuring light in plant research
Aphalo, P. J.
24 Aug 2016 → 26 Aug 2016
University of Copenhagen
Elomaa, P.
Sept 2016 & Oct 2016
Millenium Science Initiative Program
Himanen, K.
Oct 2016
Vetenskapsrådet
Kangasjärvi, J.
2016
39
European Commission
Korpelainen, H.
2016
National Science Centre, Poland
Korpelainen, H.
2016
The Israel Science Foundation
Korpelainen, H.
2016
Biotechnology and Biological Sciences Research Council, UK
Stoddard, F.
28 Jul 2016
Biotechnology and Biological Sciences Research Council, UK
Stoddard, F.
14 Nov 2016
Member of review panel with The Research Foundation Flanders
Mäkelä, A.
2016
Fonds Wetenschappelijk Onderzoek – Vlaanderen
Wrzaczek, M.
28 Jul 2016
National Science Centre Poland
Wrzaczek, M.
2 Nov 2016
Membership or other role in international/national scientific committee, board, society
Red de Científicos Argentinos en Finlandia - RCAFi
Aphalo, P.
Sep 2016 → …
SITRA
Bäck, J.
2015 → 2016
Kasvilajikelautakunta, Ministry of Agriculture and Forestry
Elomaa, P.
1 Nov 2013 → 15 Nov 2019
40
University Collegium, University of Helsinki
Elomaa, P.
1 Mar 2014 → 31 Dec 2017
ZMBP Tübingen, ISAB member
Helariutta, Y.
2010 → 2016
Enterprise Champion/SLCU representative, University of Cambridge
Helariutta, Y.
2015 → …
ZMBP Tübingen, Head of the International Scientific Advisory Board (ISAB)
Helariutta, Y.
Apr 2016 → …
Council of Canadian Academies
Hyvönen, J.
1 Aug 2016
NERC Science of the Environment
Ojala, A.
29 Jul 2016
Estonian Research Council
Ojala, A.
31 Aug 2016
SPPS Education Committee
Overmyer, K.
Sep 2010 → 2016
International Organisation for Research into the effects of UV radiation on Plants (uv4plants)
Robson, T. M.
21 Nov 2014 → 31 May 2018
Pre-examiner or Opponent of Doctoral Thesis
Nuevos mecanismos moleculares de tolerancia a sequía y otros tipos de estrés abiótico en
especies arboreas de interés económico
Aphalo, P.
PhD thesis, Rajendra Ghimire
Bäck, J.
Examination of doctoral dissertation
Korpelainen, H.
41
Thesis examination of Ning Dong
Mäkelä, A.
Leaf optical signals and the acclimation of photosynthesis
Robson, T. M.
