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Page 1: Biochemistry and biomolecules vol 2 issue 2

Biochemistry & Biomolecules

International Journal of

IJBBJul–Dec 2016

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Technologies« International Journal of Digital Electronics« International Journal of Digital Communication and Analog

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New Delhi

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Page 6: Biochemistry and biomolecules vol 2 issue 2

EDITORIAL BOARD MEMBERS

Dr.Ashok Kumar Kulkarni Department of Physiology, MediCiti Institute of Medical Sciences, Medchal. Secunderabad (A.

P), India

Dr. Promila SharmaDepartment of Biotechnology,

Graphic Era University, Uttarakhand, India

Dr. Brijesh PandeyAmity University,

Uttar Pradesh, Lucknow, India

Dr. P Mary Anupama Department of Biotechnology, ANITS,

Sangivalasa, Visakhapatnam (A.P.), India

Dr. S. Seethalaksmi Vivekanandha College of Arts & Sciences for women, Periyar University, Elayampalayam,

Tiruchengod

Dr. Biswajit Majumdar Calcutta University, Institute of Post Graduate Medical Education and Research [IPGMER]

/University College of Medicine [UCM]

Dr. Agnishwar Girigoswami Medical Bio-nanotechnology, Faculty of Allied

Health Sciences Chettinad Academy of Research & Education Kelambakkam, Chennai, India

Dr.Arun Kumar Department of Biochemistry,

Manipal College of Medical Sciences, Nepal

Dr. Durgadas Govind Naik, Management and Science University,

Malaysia

Ashish Runthala Department of Biological Sciences, Birla

Institute of Technology & Science Pilani, Pilani (Rajasthan), India

Dr. Indraneel Ghosh Manager Systems Biology Department Sun Pharmaceuticals Advanced Research Centre

Limited, Vadodara (Gujarat), India

Dr. Yousef RasmiClinical Biochemistry, Faculty of Medicine

Urmia University of Medical Sciences (UMSU) Urmia, Iran

Ajay KumarGalgotias University, Greater Noida (U.P.),

India

Dr. Arvind DiwanMahatma Gandhi Mission Institute of Health

Sciences, Maharashtra, India

Dr. Ir. Sreenivas Reddy Bathula Department of Biotechnology, Bapuji Institute of

Engineering & Technology, Karnataka, India

Dr. Dinesh KumarHorticulture (Post harvest Technology)

National Research Centre for Citrus, Nagpur (Maharahtra), India

Dr. Ir. Sreenivas Reddy Bathula Department of Biotechnology, Bapuji Institute of

Engineering & Technology, Karnataka, India

Dr. Lonchin SugunaDepartment of Biochemistry Central Leather

Research Institute Adyar, Chennai, India

Dr. S Chidananda Sharma Department of Microbiology and

Biotechnology, Bangalore University, Karnataka, India

Prof. Dheera Sanadhya Jaipur National University,

Rajasthan, India

Page 7: Biochemistry and biomolecules vol 2 issue 2

EDITORIAL BOARD MEMBERS

Dr. Rajat BanerjeeDepartment of Biotechnology, University of

Calcutta, India

Dr. B. C. Guha Centre for Genetic Engineering and

Biotechnology, University of Calcutta, India

Jay Prakash Sah Pokhara University, Nepal

Dr. K.S. KarthikeyanEndocrinology and Metabolism Division,

National Institute of Nutrition, Indian Council of Medical Research, Hyderabad, India

Dr. Saher Mahmood AljamaliBiology Department, Kufa University, Iraq

Dr. M. Anusuyadevi JayachandranMolecular Gerontology Laboratory,

Department of Biochemistry, Bharathidasan University, Tamil Nadu, India

Dr. Devarakonda Srinivasa Rao Department of Biotechnology Acharya

Nagarjuna University, Guntur (DT), India

Dr. Shashi Bhushan Food and Nutraceutical Lab, Division of

Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, India

Dr. Shikha Suman Department of Botany, Banaras Hindu University, Varanasi (Uttar Pradesh),

India

Dr. Vishwanath B Chachadi Deptartment of Biochemsitry,

Karnatak University, Dharwad, India

Dr. Tashfeen Ashraf Assistant Professor, Gautam Buddha University,

UP, India

Dr. Vishwas TripathyAssistant Professor, Gautam Buddha

University, UP, India

Page 8: Biochemistry and biomolecules vol 2 issue 2

From the Editor's Desk

Dear Readers,

We would like to present, with great pleasure, the inaugural volume of a new scholarly

journal, International Journal of Biochemistry and Biomolecules. This journal is part of

the Applied Sciences, and is devoted to the scope of present Biochemistry and

Biomolecules issues, from theoretical aspects to application-dependent studies and the validation of

emerging technologies.

This new journal was planned and established to represent the growing needs of Biochemistry and

Biomolecules as an emerging and increasingly vital field, now widely recognized as an integral part of

scientific and technical investigations. Its mission is to become a voice of the Biochemistry and

Biomolecules, addressing researchers and practitioners in this area.

The core vision of International Journal of Biochemistry and Biomolecules in JournalsPub is to propagate

novel awareness and know-how for the profit of mankind ranging from the academic and professional

research societies to industry practitioners in a range of topics in Biochemistry and Biomolecules in

general. JournalsPub acts as a pathfinder for the scientific community to published their papers at

excellently, well-time & successfully. International Journals of Biochemistry and Biomolecules focuses on

original high-quality research in the realm of Metabolome, Metabolomics, Molecular medicine, Plant

biochemistry, Proteolysis, Biological macro and small molecule, Biochemical processes etc.

The Journal is intended as a forum for practitioners and researchers to share the techniques of Biochemistry

and Biomolecules and solutions in the area. Many scientists and researchers have contributed to the

creation and the success of the Biochemistry and Biomolecules. We are very thankful to everybody within

that community who supported the idea of creating an innovative platform. We are certain that this issue will

be followed by many others, reporting new developments in the field of Biochemistry and Biomolecules.

This issue would not have been possible without the great support of the Editorial Board members, and we

would like to express our sincere thanks to all of them. We would also like to express our gratitude to the

editorial staff of JournalsPub, who supported us at every stage of the project.

It is our hope that this fine collection of articles will be a valuable resource for Biochemistry and

Biomolecules readers and will stimulate further research into the vibrant area of Biochemistry and

Biomolecules.

Puneet Mehrotra

Managing Director

Page 9: Biochemistry and biomolecules vol 2 issue 2

1. Antimicrobial and Antioxidants Screening Through Phytochemical Evaluation and Nutrient Analysis of Different Medicinal Trees Swati Bhardwaj 1

2. Investigation of Systemic Acquired Resistance Establishment in Tomato Plants by Application of Marigold Extract Kumari Anukrati 14

3. A Report: New COMPASS Platform Points Directly to Protein's Likely StructureSurjit Sharma 25

4. Understanding Structure of HIV-1 Protease Vital to Development of Next-Generation HIV DrugsAnuradha Chaudhary 27

5. Phytochemical Analysis and Antibacterial Activity of Different Leaf Extracts of Murraya koenigiiRashmi, Jyoti Bisht, Naveen G 29

Contents

Page 10: Biochemistry and biomolecules vol 2 issue 2

IJBB (2016) 1-13 © JournalsPub 2016. All Rights Reserved Page 1

International Journal of Biochemistry and Biomolecules Vol. 2: Issue 2

www.journalspub.com

Antimicrobial and Antioxidants Screening Through

Phytochemical Evaluation and Nutrient Analysis of Different

Medicinal Trees

Swati Bhardwaj* Codon Biotech Private Limited, Noida, U.P., India

ABSTRACT

The aim of present study is to detailed comparison of various extracts of aerial parts of Neem, Jamun and Mast Tree as potent anti-oxidative and antimicrobial agent and their protein sequences in an attempt to provide a direction for further research. The purpose of extraction was to check the antioxidant activities of leaves and stem barks of testing plant by using different in vitro antioxidant assays. Well diffusion method is used for antibacterial activity determination against 4 different strains of bacteria. Protein profiling in the high- throughput mode is a most helpful procedure that permits development of reference databases for cells and tissues and execution of relative proteomics. In this paper we report the consequences of such studies keeping in mind the end goal to arrange future examinations towards the finding of new, strong and safe cancer prevention agent and antimicrobial mixes and framing the reason for cutting edge proteomic investigations.

Keywords: antioxidant, antibacterial, proteomics

INTRODUCTION

Various researches have been conducted in the field of aromatic and medicinal plants. It is concluded that these plants are the sources of different nutrient and non-nutrient chemicals, many of which shows antioxidant and antimicrobial quality. These properties can protect the human body against both cellular oxidation reactions and pathogens. Therefore, it is important to distinguish different types of medicinal plants for their antioxidant and antimicrobial prospective.[1–3] Plant medicines are the oldest medication known to people. In the present scenario, the requirements for plant products are growing expending all over the world. There are various publications in many

journals, national and international; we find an increasing number of research publications based on herbal drugs.[4] For thousands of years the useful qualities of plants have been identified in the Indian tradition. Every part of these trees has some medicinal property. They have been broadly used in ayurveda, unani and homoeopathic medicine. MATERIALS AND METHODS

Collection of Plant Materials Aerial parts viz. leaves and bark of Azadirachta indica, Polyalthia longifolia, Syzygium cumini Linn were collected locally; air dried separately in shade and then was coarsely powdered by using grinder (Table 1).

Page 11: Biochemistry and biomolecules vol 2 issue 2

IJBB (2016) 14–24 © JournalsPub 2016. All Rights Reserved Page 14

International Journal of Biochemistry and Biomolecules Vol. 2: Issue 2

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Investigation of Systemic Acquired Resistance Establishment in

Tomato Plants by Application of Marigold Extract

Kumari Anukrati* Department of Biotechnology, Amity University, Noida, India

ABSTRACT

In this study an effort was made to understand the impact of marigold leaf extract on the expression and activity of defense enzymes; Peroxidase (POX) and Catalase and their ability to induce defense response in tomato plants. Effect of aqueous leaf extract of T. erecta was observed on activity of PR proteins POX and Catalase on seven week old tomato plants. Aqueous leaf extract of T. erecta was sprayed on the third nodal leaves from the base of each plant 7 week old tomato plants and activity of PR proteins POX and Catalase was studied. The extract was sprayed to 3rd nodal leaves of the host plants and the enzyme activities of the above stated proteins were assayed in the untreated leaves of the same plants. The results gave an outlook of induced changes in host plant due to introduction of a foreign component to the plant. The host plant tends to reduce its PR protein activity initially, but gradually it attains its normal expression, thereby, proving that marigold leaf extract do not impart any deleterious effect on the host plant. Keywords: catalase, enzyme, peroxidase

INTRODUCTION

Tomato (Lycopersiconesculentum) is the world’s largest vegetable crop. Tomato is a herb, usually a sprawling plant belonging to the Solanaceae family, widely cultivated for its edible fruit. The fruit is considered a vegetable and has a distinctive red color when ripe. It is a native of South America with a center of diversity in Peru. Thousands of cultivars have been selected and bred which vary in shape, size, and color. Why tomato was chosen as a host: Tomato was decided for the work in light of its financial significance for all tropical and sub-tropical locales of the world. It is agreeable to creating pharmaceuticals, especially for oral conveyance; for a considerable lot of similar reasons, it is a

famous vegetable. Its natural product does not contain poisonous substances and is tasteful uncooked. High temperature stress is known to lessen natural product set in tomato. Systemic acquired resistance (SAR) is a mechanism of induced defense that provides long-lasting protection to plants against pathogen. The systemic acquired resistance follows a prior localized exposure to a pathogen or a biotic elicitor. SAR is similar to the innate immune system that is found in animals, and thus conferring immunization to plants. In order to respond to pathogen, plants use pattern-recognition receptors to identify the microorganism, this recognition thus triggers an immune response. The first plant receptors of conserved microbial signatures were identified in

Page 12: Biochemistry and biomolecules vol 2 issue 2

IJBB (2016) 25-26 © JournalsPub 2016. All Rights Reserved Page 25

International Journal of Biochemistry and Biomolecules Vol. 2: Issue 2

www.journalspub.com

A Report: New COMPASS Platform Points Directly to Protein's

Likely Structure

Surjit Sharma Department of Biotechnology, Dr. B. Lal Institute of Biotechnology, Jaipur, India

Searching for the precise, complexly folded three-dimensional structure of a protein can resemble hacking through a wilderness without a guide: a long, intensive process with uncertain direction. University of Illinois scientists developed another approach, named COMPASS that focuses specifically to a protein's likely structure utilizing a combination of advanced molecular spectroscopy techniques, prescient protein- folding algorithms and image recognition software. Chad Rienstra, a Chemistry Professor and their team showed this process. They have taken a process that would take months and brought it down to hours, said Joseph Courtney, an Illinois graduate student. They expect this to not only accelerate the rate at which they can study proteins, but also increase its repeatability and the reliability. Proteins carry out functions inside the cell, and those functions are determined by the proteins' exact structures - the way they overlap and turn into a many-sided three-dimensional shape. Many diseases are caused about by a protein that is not acting effectively, or there is a lot of it. On the off chance that you can comprehend what the proteins appear as though, you can examine how they work, and you can configuration medications and medicines for those infections," Courtney said. "A noteworthy advantage is that on the off chance that you can design a drug to perfectly fit a

single protein that eliminates reactions, because it won't interact with other molecules." One key strategy for deciding a protein's share is a technique called X-ray crystallography. In any case, many medically interesting proteins - for instance, the fibrils that describe Parkinson's disease - do not form crystals, so researchers have swung to more progressed spectroscopic systems. Those systems oblige months to years of intensive data collection and analysis, taking various readings and measurements of the protein's spectrum. The Illinois group saw a chance to take advantage in structure prediction algorithms,, computational models that generate various conceivable ways a protein could fold base on its sequence. "The real deficiency of those displaying methodologies is that they never know whether they're correct," Rienstra said. "It's awesome to have models, yet despite everything it leaves a great many potential outcomes. We require some sort of test information to figure out which is the correct one." For COMPASS, the researchers depend upon a single spectrum measurement utilizing a technique called nuclear magnetic resonance, which gives a molecular “fingerprint” no two protein structures have a same spectrum [1]. The COMPASS platform takes a gander at the conceivable structures produced by the

Page 13: Biochemistry and biomolecules vol 2 issue 2

IJBB (2016) 27-28 © JournalsPub 2016. All Rights Reserved Page 27

International Journal of Biochemistry and Biomolecules Vol. 2: Issue 2

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Understanding Structure of HIV-1 Protease Vital to Development

of Next-Generation HIV Drugs

Anuradha Chaudhary Department of Biotechnology, Lovely Professional University, Punjab, India

HIV, the virus that causes AIDS, has turned out to be one of the world's most serious health and advancement challenges. At present, there are roughly 36.9 million individuals living with HIV and a huge number of individuals have died of AIDS-related causes since the beginning of the epidemic in 1981. HIV not affects the health of individuals, it impacts households, and the communities and development and economic growth of nations there is still no cure (https://www.ornl.gov/). HIV treatment incorporates pharmaceuticals to prevent and treat the numerous opportunistic infections that can happen when the immune system is

compromised by HIV, and in addition the utilization of antiretroviral treatment (ART) to attack the virus itself, with the halting the development of AIDS. ART, initially presented in 1996, has prompted to dramatic reductions in morbidity and mortality; all around, 40% of individuals living with HIV are accepting treatment. HIV-1 protease is an enzyme in charge of development of virus particles into infectious HIV virions, which eventually prompts to the development of AIDS. Without effective HIV-1 protease activity, HIV virions remain non-infectious with this essential part in HIV replication, the disruption of HIV-1 protease action is along these lines a key focus for effective ART drugs (https://www.ornl.gov/).

Page 14: Biochemistry and biomolecules vol 2 issue 2

IJBB (2016) 29-33 © JournalsPub 2016. All Rights Reserved Page 29

International Journal of Biochemistry and Biomolecules Vol. 2: Issue 2

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Phytochemical Analysis and Antibacterial Activity of Different

Leaf Extracts of Murraya koenigii

Rashmi, Jyoti Bisht*, Naveen G Department of Biotechnology, Sri Guru Ram Rai Post Graduate College, Dehradun, Uttarakhand, India

ABSTRACT

Murraya koenigii also known as a curry-leaf tree is use as a medicinal plant in India. In the present study, different phytochemicals were extracted and tested against Bacillus cereus, Pseudomonas aeuriginosa and Staphylococcus aureus by agar well diffusion method. Alkaloid, carbohydrate, tannins, terepnoids were present in all extracted samples, however cardiac glycosides and phylobatannins were extracted only in methanolic and ethanolic extracts of plant leaves sample. In all solvent extract from leaves of M. koenigii and minimum activity was recorded at 25 ppm of plant extract concentration. Maximum antibiotic activity was recorded with aqueous extract of leaves against S. aureus. In case of P. aeruginosa, all extracts were failed to show antibacterial activity. Keywords: antibacterial leaves extract, M. koenigii, phytochemicals

INTRODUCTION

Various medicinal systems like Ayurveda, Amchi, etc. and local health traditions are practiced in India, which utilize a large number of plants for treatment of various human and animal diseases. Those plants used for medicinal purpose are known as medicinal plants. The medicinal value of plant depends on numerous active compounds such as carbohydrates, proteins, enzymes, oils, terpenoids, phenolic compounds etc., which are helpful in improving the life and treatment of disease. Many plants have antimicrobial principles such as tannins, essential oils and other aromatic compounds. These compounds protect the plant from microbial infection and Deterioration [1]. The presence of important phytochemicals makes the plant useful against different diseases and has a strong of providing useful drugs of human use. Phytochemicals are regarded as secondary metabolites produced at very little amount

as the plant have little need for them. They are produced naturally in whole parts of the plant body; like bark, leaves, stem, root, flower, etc. [2]. The quantity and quality of phytochemicals present in plant parts may differ from one part to another [3]. One of the medicinally important herbs is M. Koenigii, has a placed in a family Rutaceae and normally known as curry-leaf tree. The plant is a local of India, Sri Lanka and other south Asian nations. It is discovered wherever in the Indian subcontinent [4]. The plant is exceptionally esteemed for its leaves a vital fixing in an Indian cooking to advance edacity and processing. The leaves, root and bark are tonic, for stomach pain. Leaves are utilized inside as a part of loose bowels, likewise checking regurgitating [5]. The leaves and roots are biting, harsh, cooling, hostile to

Page 15: Biochemistry and biomolecules vol 2 issue 2

Biochemistry & Biomolecules

International Journal of

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« International Journal of Radio Frequency Design« International Journal of VLSI Design and Technology« International Journal of Embedded Systems and Emerging

Technologies« International Journal of Digital Electronics« International Journal of Digital Communication and Analog

Signals

« International Journal of Housing and Human SettlementPlanning

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Applied Mechanics

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Computer Science and Engineering « International Journal of Wireless Network Security« International Journal of Algorithms Design and Analysis« International Journal of Mobile Computing Devices« International Journal of Software Computing and Testing« International Journal of Data Structures and Algorithms

Nanotechnology« International Journal of Applied Nanotechnology« International Journal of Nanomaterials and Nanostructures« International Journals of Nanobiotechnology

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Physics

« International Journal of Renewable Energy and itsCommercialization

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Pollution

Civil Engineering« International Journal of Water Resources Engineering« International Journal of Concrete Technology« International Journal of Structural Engineering and Analysis« International Journal of Construction Engineering and

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Electrical Engineering« International Journal of Analog Integrated Circuits« International Journal of Automatic Control System« International Journal of Electrical Machines & Drives« International Journal of Electrical Communication

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Engineering

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Biomaterials« International Journal of Plant Biotechnology« International Journal of Molecular Biotechnology« International Journal of Biochemistry and Biomolecules« International Journal of Animal Biotechnology and

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