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World Health Organization, global burden of neurological disorders estimates and projections, 2014
Social deficits Communication deficits Repetitive behaviors
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phenotype
behavior
imaging
genetic
• Aim 1: To summarize specific behavioral phenotypes as brain maps and gene sets
• Aim 2: To validate brain maps and behavior-gene
sets using external data from individuals with Autism Spectrum Disorder
• Aim 3: To generate a complex network of genes
and behaviors across multiple neuropsychiatric disorders, and functionally annotate this result
Aim 1
To summarize specific behavioral phenotypes as brain maps and gene sets
What does the neuroscience literature have to say about the experience of anxiety? ?:
A: 1 0 1 0 0 0 2 1 0 1 0 1 3 0 0 0 0 1 4 1 0 0 0 1 5 0 1 1 0 0 6 0 0 0 0 0 7 0 1 0 1 1
STU
DIE
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VOXEL COORDINATES
NEU
RO
SYN
TH
What does the neuroscience literature have to say about the experience of anxiety? ?: N
EUR
OSY
NTH
A:
ALLEN
BR
AIN
ATLA
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ALLEN
BR
AIN
ATLA
S
Sample 1 Sample 2. . Sample N
genes 1.. 60K
0.25 .012 1.20 … … … 1.50 0.80 3.40 … … … 0.80 0.90 1.00 … … … 0.40 .075 0.20 … … … 1.40 0.32 4.50 … … … 0.89 0.21 2.40 … … … 0.70 0.10 1.20 … … …
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Bigger change = more “important”
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R2
% variance accounted for by model quality of model predictors
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R2 with attribute j
R2 without attribute j
Shapley value of gene j
weight based on n total Predictors, k in model
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marginal contribution to the R2 from adding the attribute to the model last
0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 1
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0.25 0.12 1.20 1.50 0.80 3.40 0.80 0.90 1.00 0.40 0.75 0.20 1.40 0.32 4.50 0.89 0.21 2.40 0.70 0.10 1.20
1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0
Aim 2
To validate brain maps and behavior-gene sets using external data from individuals with Autism Spectrum Disorder
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Subramanian, et. al, Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. PNAS 2005 102 (43) 15545-15550; published ahead of print September 30, 2005,doi:10.1073/pnas.0506580102
Aim 3
To generate a complex network of genes and behaviors across multiple neuropsychiatric disorders, and functionally annotate this result
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