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Non-Deterministic Finite Automata. HM2 samples 1. Question ID 74: Examine the following DFA: Identify in the list below the string that this automaton
Documents Non-Deterministic Finite Automata. HM2 samples 1. Question ID 74: Examine the following DFA: Identify in the list below the string that this automaton

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BMS scolloquium
Technology BMS scolloquium

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Heuristic Local Alignerers 1.The basic indexing & extension technique 2.Indexing: techniques to improve sensitivity Pairs of Words, Patterns 3.Systems
Documents Heuristic Local Alignerers 1.The basic indexing & extension technique 2.Indexing: techniques to improve sensitivity Pairs of Words, Patterns 3.Systems

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Sequence Similarity. The Viterbi algorithm for alignment Compute the following matrices (DP) M(i, j):most likely alignment of x 1 …x i with y 1 …y j
Documents Sequence Similarity. The Viterbi algorithm for alignment Compute the following matrices (DP) M(i, j):most likely alignment of x 1 …x i with y 1 …y j

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Database searching. Purposes of similarity search Function prediction by homology (in silico annotation) Function prediction by homology (in silico annotation)
Documents Database searching. Purposes of similarity search Function prediction by homology (in silico annotation) Function prediction by homology (in silico annotation)

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Evolution at the DNA level …ACGGTGCAGTTACCA… …AC----CAGTCCACCA… Mutation SEQUENCE EDITS REARRANGEMENTS Deletion Inversion Translocation Duplication
Documents Evolution at the DNA level …ACGGTGCAGTTACCA… …AC----CAGTCCACCA… Mutation SEQUENCE EDITS REARRANGEMENTS Deletion Inversion Translocation Duplication

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CS273a Lecture 8, Win07, Batzoglou Evolution at the DNA level …ACGGTGCAGTTACCA… …AC----CAGTCCACCA… Mutation SEQUENCE EDITS REARRANGEMENTS Deletion Inversion
Documents CS273a Lecture 8, Win07, Batzoglou Evolution at the DNA level …ACGGTGCAGTTACCA… …AC----CAGTCCACCA… Mutation SEQUENCE EDITS REARRANGEMENTS Deletion Inversion

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CS273a Lecture 11, Aut 08, Batzoglou Multiple Sequence Alignment
Documents CS273a Lecture 11, Aut 08, Batzoglou Multiple Sequence Alignment

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Some new sequencing technologies. Molecular Inversion Probes
Documents Some new sequencing technologies. Molecular Inversion Probes

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March 2006Vineet Bafna Database Filtering. March 2006Vineet Bafna Project/Exam deadlines May 2 – Send email to me with a title of your project May 9 –
Documents March 2006Vineet Bafna Database Filtering. March 2006Vineet Bafna Project/Exam deadlines May 2 – Send email to me with a title of your project May 9 –

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CS273a Lecture 10, Aut 08, Batzoglou Multiple Sequence Alignment
Documents CS273a Lecture 10, Aut 08, Batzoglou Multiple Sequence Alignment

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–Def: A language L is in BPP c,s ( 0 s(n) c(n) 1, n N) if there exists a probabilistic poly-time TM M s.t. : 1. w L, Pr[M accepts w] c(|w|),
Documents –Def: A language L is in BPP c,s ( 0 s(n) c(n) 1, n N) if there exists a probabilistic poly-time TM M s.t. : 1. w L, Pr[M accepts w] c(|w|),

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