This presentation will be structured around the research cycle, beginning with experimental hypothesis, moving to data collection, analysis/writing, publication and finishing with scientific networking and collaboration. As we walk through the cycle, we will introduce and discuss many of the concepts that shape modern research. From big data, small data, curation and ontologies to open laboratory notebooks and team science initiatives, participants will come away with a working knowledge of the key issues surrounding eScience. Jackie Wirz, PhD, Biomedical Research Specialist & Assistant Professor, Oregon Health & Science University Amanda Whitmire, PhD, Data Management Specialist & Assistant Professor, Oregon State University Please note: We used non-standard fonts and several large image files: the result is that this presentation does not look great in Slideshare. If you would like high quality slides, please let us know! Also, the notes are minimal: Jackie will go back and annotate her slides in the future.
Citation preview
1. SCIENCE IS A MOVIN eScience, Team Science the Data Deluge
and More
2. Hello there!
3. 1 | Research 101 2 | The Cycle 3 | +Library
4. Jackie
5. Amanda
6. Research Rocks
7. 1 | Research 101
8. The Research Cycle
9. The Research Cycle
10. The Research Cycle 1. Brilliant Idea! 2. Build Idea 3. Fund
Idea 4. Research 5. Compile 6. Share & Store 7. Fame,
Fortune
11. The Research Cycle: What people think 1. Brilliant Idea! 2.
Build Idea 3. Fund Idea 4. Research 5. Compile 6. Share & Store
7. Fame, Fortune (cure cancer)
12. The Research Cycle: What Really Happens 1. Brilliant Idea!
2. Build Idea 3. Fund Id 4. Research 5. Compile 6. Share &
Store 7. Fame, Fortune
13. The Research Cycle: What Really Happens 1. Idea! 2. Build
Idea 3.FUND IDEA4.Research 5. Compile 6. Share & Stor 1. Idea
#2 2. Try #2 0. Failure!! 1. Idea #896 0. Try Beer 2. Build
#896
24. The Research Cycle 1. Brilliant Idea! 2. Build Idea 3. Fund
Idea 4. Research 5. Compile 6. Share & Store 7. Fame,
Fortune
25. Where do good ideas come from?
26. Hypothesis |incremental |data
27. Literature
28. conferences
29. Thinking (really hard)
30. Group Drinking Thinking
31. The Research Cycle 1. Brilliant Idea! 2. Build Idea 3. Fund
Idea 4. Research 5. Compile 6. Share & Store 7. Fame,
Fortune
32. Existing data | literature | Databases
33. Existing data | literature | Databases
34. Colleagues Team Science
35. OHSU Schools Resources Shared Research Resources Research
Centers Advanced Imaging Research Center Casey Eye Institute Center
for Coastal Margin Observation and Prediction Center for Ethics in
Health Care Center for Evidence-Based Policy Center for Policy
& Research in Emergency Medicine Center for Research on
Occupational Environmental Toxicology Child Development and
Rehabilitation Center Dotter Interventional Institute Harold
Schnitzer Diabetes Health Center Heart Research Center Jungers
Center for Neurosciences Research Knight Cancer Institute Layton
Aging and Alzheimer's Disease Center Methamphetamine Abuse Research
Center OHSU Epilepsy Center One Sky Center Oregon Brain Institute
Oregon Center for Aging and Technology Oregon Center for
Complementary & Alternative Medicine in Neurological Disorders
Oregon Clinical and Translational Research Institute Oregon
Evidence Based Practice Institute Oregon Health Policy Institute
Oregon Hearing Research Center Oregon National Primate Research
Center Oregon Stem Cell Center Oregon Stroke Center Parkinson
Center of Oregon Portland Alcohol Research Center Research Center
for Gender-Based Medicine Vaccine and Gene Therapy Institute Vollum
Institute Advanced Computing Advanced Light Microscopy Affymetrix
Microarray Illumina Microarray Bioanalytical/Pharmacokinetics
Biostatistics DNA Services Electronics and Instrumentation Design
Flow Cytometry Histopathology Proteomics Transgenic Mouse Models
School of Medicine Behavioral Neuroscience Biochemistry and
Molecular Biology Cell and Developmental Biology Molecular and
Medical Genetics Molecular Microbiology and Immunology Physiology
and Pharmacology Science and Engineering Anesthesiology and
Perioperative Medicine Dermatology Diagnostic Radiology Emergency
Medicine Family Medicine Medical Informatics and Clinical
Epidemiology Medicine Neurological Surgery Neurology Obstetrics
& Gynecology Ophthalmology Orthopaedics & Rehabilitation
Otolaryngology & Head & Neck Surgery Pathology Pediatrics
Psychiatry Public Health & Preventive Medicine Radiation
Medicine Surgery Research Pharmacy Departmental Cores Other
Resources Clinical Science Dental Clinical Research Center School
of Dentistry Hartford Center for Geriatric Nursing Excellence
School of Nursing Basic Science School of Pharmacy Cores OHSU
Library Science Education and Outreach Center for Diversity and
Multicultural Affairs Medical Photography Educational
Communications
36. OHSU Schools Resources Shared Research Resources Research
Centers Advanced Imaging Research Center Casey Eye Institute Center
for Coastal Margin Observation and Prediction Center for Ethics in
Health Care Center for Evidence-Based Policy Center for Policy
& Research in Emergency Medicine Center for Research on
Occupational Environmental Toxicology Child Development and
Rehabilitation Center Dotter Interventional Institute Harold
Schnitzer Diabetes Health Center Heart Research Center Jungers
Center for Neurosciences Research Knight Cancer Institute Layton
Aging and Alzheimer's Disease Center Methamphetamine Abuse Research
Center OHSU Epilepsy Center One Sky Center Oregon Brain Institute
Oregon Center for Aging and Technology Oregon Center for
Complementary & Alternative Medicine in Neurological Disorders
Oregon Clinical and Translational Research Institute Oregon
Evidence Based Practice Institute Oregon Health Policy Institute
Oregon Hearing Research Center Oregon National Primate Research
Center Oregon Stem Cell Center Oregon Stroke Center Parkinson
Center of Oregon Portland Alcohol Research Center Research Center
for Gender-Based Medicine Vaccine and Gene Therapy Institute Vollum
Institute Advanced Computing Advanced Light Microscopy Affymetrix
Microarray Illumina Microarray Bioanalytical/Pharmacokinetics
Biostatistics DNA Services Electronics and Instrumentation Design
Flow Cytometry Histopathology Proteomics Transgenic Mouse Models
School of Medicine Behavioral Neuroscience Biochemistry and
Molecular Biology Cell and Developmental Biology Molecular and
Medical Genetics Molecular Microbiology and Immunology Physiology
and Pharmacology Science and Engineering Anesthesiology and
Perioperative Medicine Dermatology Diagnostic Radiology Emergency
Medicine Family Medicine Medical Informatics and Clinical
Epidemiology Medicine Neurological Surgery Neurology Obstetrics
& Gynecology Ophthalmology Orthopaedics & Rehabilitation
Otolaryngology & Head & Neck Surgery Pathology Pediatrics
Psychiatry Public Health & Preventive Medicine Radiation
Medicine Surgery Research Pharmacy Departmental Cores Other
Resources Clinical Science Dental Clinical Research Center School
of Dentistry Hartford Center for Geriatric Nursing Excellence
School of Nursing Basic Science School of Pharmacy Cores OHSU
Library Science Education and Outreach CeDMA Medical Photography
Educational Communications
37. OHSU Schools + Shared Research Resources Research Centers
Advanced Imaging Research Center Casey Eye Institute Center for
Coastal Margin Observation and Prediction Center for Ethics in
Health Care Center for Evidence-Based Policy Center for Policy
& Research in Emergency Medicine Center for Research on
Occupational Environmental Toxicology Child Development and
Rehabilitation Center Dotter Interventional Institute Harold
Schnitzer Diabetes Health Center Heart Research Center Jungers
Center for Neurosciences Research Knight Cancer Institute Layton
Aging and Alzheimer's Disease Center Methamphetamine Abuse Research
Center OHSU Epilepsy Center One Sky Center Oregon Brain Institute
Oregon Center for Aging and Technology Oregon Center for
Complementary & Alternative Medicine in Neurological Disorders
Oregon Clinical and Translational Research Institute Oregon
Evidence Based Practice Institute Oregon Health Policy Institute
Oregon Hearing Research Center Oregon National Primate Research
Center Oregon Stem Cell Center Oregon Stroke Center Parkinson
Center of Oregon Portland Alcohol Research Center Research Center
for Gender-Based Medicine Vaccine and Gene Therapy Institute Vollum
Institute Advanced Computing Advanced Light Microscopy Affymetrix
Microarray Illumina Microarray Bioanalytical/Pharmacokinetics
Biostatistics DNA Services Electronics and Instrumentation Design
Flow Cytometry Histopathology Proteomics Transgenic Mouse Models
School of Medicine Behavioral Neuroscience Biochemistry and
Molecular Biology Cell and Developmental Biology Molecular and
Medical Genetics Molecular Microbiology and Immunology Physiology
and Pharmacology Science and Engineering Anesthesiology and
Perioperative Medicine Dermatology Diagnostic Radiology Emergency
Medicine Family Medicine Medical Informatics and Clinical
Epidemiology Medicine Neurological Surgery Neurology Obstetrics
& Gynecology Ophthalmology Orthopaedics & Rehabilitation
Otolaryngology & Head & Neck Surgery Pathology Pediatrics
Psychiatry Public Health & Preventive Medicine Radiation
Medicine Surgery Research Pharmacy Departmental Cores Other
Resources Clinical Science Dental Clinical Research Center School
of Dentistry Hartford Center for Geriatric Nursing Excellence
School of Nursing Basic Science School of Pharmacy Cores OHSU
Library Science Education and Outreach CeDMA Medical Photography
Educational Communications
38. OHSU Schools + Shared Research Resources Research Centers
School of Medicine Other Resources Clinical Science School of
Dentistry School of Nursing Basic Science School of Pharmacy Cores
OHSU Library
39. Colleagues Team Science
40. The Research Cycle 1. Brilliant Idea! 2. Build Idea 3. Fund
Idea 4. Research 5. Compile 6. Share & Store 7. Fame,
Fortune
41. Money, money, money
42. Where Money Trees Grow
43. How We can Help.
44. How We can Help.
45. The Research Cycle 1. Brilliant Idea! 2. Build Idea 3. Fund
Idea 4. Research 5. Compile 6. Share & Store 7. Fame,
Fortune
46. Lab Notebooks 0 100 200 300 400 500 600 700 800 900 1000
Number of labs with inventory Total number of labs
47. Lab Notebooks: Next Generation
48. Data management 1. Online resourc 2. workshops 3.
consultations 4. coursework 5. Collaboration 6. Data curation
49. Shared vs discoverable vs OPeNDAP
50. Data Tracking | version control
51. Naming conventions Project_instrument_location_YYYYMMDDhhm
mss_extra.ext Index/grant conditions Leading zero! s/n, variable
Retain order
52. The Research Cycle 1. Brilliant Idea! 2. Build Idea 3. Fund
Idea 4. Research 5. Compile 6. Share & Store 7. Fame,
Fortune