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Sharing and Open Knowledge and the Future of Scientific
ResearchHiroaki Kitano
The Systems Biology Institute
Sony Computer Science Laboratories, Inc.
EGF Receptor Cascade
Oda, et al. Molecular Systems Biology, 2005
Architectural Feature
Kitano, Nature Reviews Genetics, Nov. 2004
Copyright ©2007 by the National Academy of Sciences
Kim, Pan-Jun et al. (2007) Proc. Natl. Acad. Sci. USA 104, 13638-13642
Fig. 1. Characteristics of essential and nonessential metabolites in E. coli metabolism
Ma et al, Molecular Systems Biology, Sept 2007
Bow-Tie Architecture of Wikipedia links
Capocci, et al., Phys Rev. E 74, 036116, 2006
EGF Receptor Cascade
Oda, et al. Molecular Systems Biology, 2005
Oda, et al. Molecular Systems Biology, 2005
TLR Bow-Tie Structure
Oda and Kitano, Molecular Systems Biology, April 2006
低下する製薬産業の生産性
Copyright ©2003 by the National Academy of Sciences
Borisy, Alexis A. et al. (2003) Proc. Natl. Acad. Sci. USA 100, 7977-7982
Multicomponent therapeutics that prevent proliferation of fluconazole-resistant C. albicans
CombinatoRX (CRXX: NASDAQ) cHTS
Copyright ©2003 by the National Academy of Sciences
Borisy, Alexis A. et al. (2003) Proc. Natl. Acad. Sci. USA 100, 7977-7982
Chlorpromazine, an antipsychotic agent, and pentamidine, an antiprotozoal agent, together selectively prevent tumor cell growth in vitro and in vivo
Phase 1/2A Stage
Copyright ©2003 by the National Academy of Sciences
Borisy, Alexis A. et al. (2003) Proc. Natl. Acad. Sci. USA 100, 7977-7982
Chlorpromazine, an antipsychotic agent, and pentamidine, an antiprotozoal agent, together selectively prevent tumor cell growth in vitro and in vivo
Phase 1/2A Stage
Efficacy
朝鮮人参の成分分析
Wang, M. et al., Phytother Res. 2005 Mar;19(3):173-82
Open Pharma• Combination of Generic compounds to
generate highly effective drugs• Equivalent efficacy by partial replacement
of compounds• Value lies in “Combination” rather than
compound itself.
• Toward open source pharmaceutical industry
The Rule of the Game Will Change
“PAYAO”Web 2.0 Community Tagging System
to SBML models
Okinawa Institute of Science and TechnologyThe Systems Biology Institute
“PAYAO”
• an artificial floating raft where fish congregate
Payao: Web2.0 Community-Based Biological Knowledge Accumulation System
SBML Models Tagging System
*CellDesigner files
PAYAOSBML Models Tagging System
Manage Models,
Users,Groups
SBML files
Register a model
Store models, Tags, Comments
Login Users
VisitorsModel OwnerAdd Comments
Add/Edit Tags
to the model
View Models withCellDesigner notation
Group A
Group B
Model View
Model View with Tag Marks
Tag
View a Tag
Add Comments to a Tag
View Comments to a Tag
PubMed ID Link
Healthcare & Wellness ConciergeGenome Diagnosis(23 and me)
Wellness(India, etc)
Personalized & Preventive medicine
How to integratemedicine and wellness?
Herbal medicine, meditation, etc.
Novel Drug Design and Integrated Healthcare Support
Summary
• Networks are complex but has sort of “design principles”
• Long tail drug need to be pursued to create more effective drugs
• Open Pharma may open up a whole new paradigm of drug design, distribution, and services.
• Open infrastructure is the key for success