Atividade 1 - Bioinformatica

UNIVERSIDADE ESTADUAL DE MARINGÁ

ESPECIALIZAÇÃO EM BIOTECNOLOGIA

TURMA 5 – 2014

FUNDAMENTOS DE BIOINFORMÁTICA

ATIVIDADE DE FUNDAMENTOS DE BIOINFORMÁTICA

DIEGO IGOR ALVES FERNANDES DE ARAÚJO

MAT. PG 69769

JOÃO PESSOA – PB

AGOSTO / 2015

Atividade 1 de Bioinformática – Prof. Dr. João Pamphile

Utilizando a ferramenta BLASTN do http://www.ncbi.nlm.nih.gov/ identifique os organismos a que pertencem as sequências abaixo:

Sequência-1GGGAACGCGCTCGGCGCACCAGAAACCTTTGTGAACTTATACCTTACTGTTGCCTCGGCGCAGGCCGGCCTCCCTGGAGGCCCCTCTGAGAGGAGGAGCAGCCCGCCGGCGGCCAACTAAACTCTTGTTTCTTAGTGAATCTCTGAGTAAAAAAACATAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCACTGCTTGGTGTTGGGGCACCGCCTGTAAAAGGGCGGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATCTCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAATTTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCA

Phomopsis sp. G11-14 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence

Organismo: Phomopsis sp. G11-14 Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Diaporthales; Valsaceae; Phomopsis.

Autores: Rhoden,S.A., Garcia,A., Rubin Filho,C.J., Azevedo,J.L. , Pamphile,J.A.

Sequência-2GGGATATGATGGAACGCGCGTCGGCGCACCAGAAACCTTTGTGAACTTATACCTTACTGTTGCCTCGGCGCAGGCCGGGCCTCCCTGGAGGCCCCTCTGAGAGGAGGAGCAGCCCGCCGGCGGCCAACTAAACTCTTGTTTCTTAGTGAATCTCTGAGTAAAAAAACATAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCACTGCTTGGTGTTGGGGCACCGCCTGTAAAAGGGCGGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATCTCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAATTTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGGAAGGAA

Phomopsis sp. G10-20 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence

Organismo: Phomopsis sp. G10-20 Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Diaporthales; Valsaceae; Phomopsis.

Autores: Rhoden,S.A., Garcia,A., Rubin Filho,C.J., Azevedo,J.L., Pamphile,J.A.

Sequência-3GGATGCTGGAACGCGCCTCGGGCGCACCAGAAACCTTTGTGAACTTATACCTTACTGTTGCCTCGGCGCAGGCCGGCCTCCCTGGAGGCCCCTCTGAGAGGAGGAGCAGCCCGCCGGCGGCCAACTAAACTCTTGTTTCTTAGTGAATCTCTGAGTAAAAAAACATAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCACTGCTTGGTGTTGGGGCACCGCCTGTAAAAGGGCGGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATCTCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAATTTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAACATACACTAAAAAA

Phomopsis sp. G9-38 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence

Organismo: Phomopsis sp. G9-38 Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Diaporthales; Valsaceae; Phomopsis.

Autores: Rhoden,S.A., Garcia,A., Rubin Filho,C.J., Nakamura,C.V., Pamphile,J.A.

Sequência-4AAGGGACTATTATGAGTTAACAACTCCAAACCTGTGAACATACTACTGTTGCTTCGGCGGGACCGCCCCGGGCGCCTTCGCGGTGCCCCGGAACCAGGCGCCCGCCGGGGACATCAAACTCTTGATTGTTATAGTGGCATTCTCTGAGTAAAACATACAAATAAGTCAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCTGAGCGTCATTTCAACCCTCGCCCCCGGCTTCTGCTGGGAGCGGTGTTGGGGATCGGCCGCCCGTCACTGGGAGGCCGGCCCCGAAATAGAGTGGCGACCACGCCGTGTGCTCCTCTGCGTAGTAGTAAATCACCTCGCAGGCGGACAGCGGTGCGGCCTGCCGTAAAACCCCCAACTCTTTCTGGTTGACCTCAGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAA

Cordyceps memorabilis internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence

Organismo: Cordyceps memorabilis Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Cordycipitaceae; Cordyceps.

Autores: Rhoden,S.A., Garcia,A., Rubin Filho,C.J., Nakamura,C.V., Pamphile,J.A.

Sequência-5

GGGGACTATTGACTGGAACGCAGCGTATCGGCGCACCAGAAACCTTTGTGAACTTATACCTATTGTTGCCTCGCGCGTCAGGCCGGCCTCTTCACTGAGGCCCCCCGCGAGACGGGGAGCAGCCCGCCGGCGGCCAACTAAACTCTTGTTTCTATAGTGAATCTCTGAGTAAAAAACATAAATGAATCAAACTTTCAACAACGGATCTCTTGGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCGGAATTCACGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTTGGTTCCGAGAGGAGCCGGCCCTGGAAATTCCGTTGGCGAAGCTCGCCCAGGACCCCCGAGCGTTAGTAGTTATATCTCCGCTTTGGAAGGGCCTGGCGGTGCCCTGCCGTTAAACCCCAACTCCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCATAAGCGGAAGA

Diaporthe longicolla strain G9-10 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence

Organismo: Diaporthe longicolla Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Diaporthales; Diaporthaceae; Diaporthe.

Autores: Rhoden,S.A., Garcia,A., Rubin Filho,C.J., Nakamura,C.V., Pamphile,J.A.