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PopGen – 1.1INSTALLATION SCREENSHOTS
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Installation instructions for software required to run PopGen
This presentation contains the screen shots of each of the steps involved in the software installation required for running PopGen 1.1 on a 64-bit windows operating system Process is the same for 32 bit operating system
The installation instructions are presented for a computer on which the user has ‘administrative’ privileges
During the installation process, whenever the Windows pop-up asks for ‘User account control’, click Yes
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Python 2.7.9 INSTALLATION
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Python 2.7.9 Set-up 4
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Python 2.7.9 Set-up 5
Python 2.7.9 Set-up 6
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Python 2.7.9 Set-up 7
MySQL INSTALLATION
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MySQL Set-up9
MySQL Set-up10
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MySQL Set-up11
MySQL Set-up12
Click and expand Developer Components
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MySQL Set-up13
Click and expand C IncludeFiles/Lib Files
MySQL Set-up14
Select the option This feature willbe installed on local hard drive
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MySQL Set-up15
MySQL Set-up16
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MySQL Set-up17
MySQL Set-up18
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MySQL Set-up 19
MySQL Set-up20
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MySQL Set-up21
MySQL Set-up22
Select 200 from the dropdown menu
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MySQL Set-up23
Leave the default ‘PortNumber’ as is
MySQL Set-up24
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MySQL Set-up25
MySQL Set-up26
Type password as: 1234
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MySQL Set-up27
MySQL Set-up28
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NUMPYSCIPY
INSTALLATION
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MySQL-python Set-up 30
1. Navigate to the “Supplementary_Packages” folder that you had downloaded earlier. Open the following folders located in “Supplementary_Packages”: numpy-1.9.2+mkl-cp27-none-win_amd64
scipy-0.16.1-cp27-none-win_amd64
2. Copy and paste the following sub-folders to “C:/Python27/Lib/site-packages” numpy
numpy-1.9.2.data
numpy-1.9.2.dist-info
scipy
scipy-0.16.1.dist-info
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MySQL-python INSTALLATION
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MySQL-python Set-up 32
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MySQL-python Set-up
The system should automatically detect Python27 as the python directory. If not, it means that there are other python versions installed on your computer. Check and remove other python versions, before proceeding with the installation.
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MySQL-python Set-up 34
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MySQL-python Set-up 35
Matplotlib 1.4.3 INSTALLATION
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Matplotlib Set-up 37
Matplotlib Set-up
The system should automatically detect Python27 as the python directory. If not, it means that there are other python versions installed on your computer. Check and remove other python versions, before proceeding with the installation.
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Matplotlib Set-up 39
Matplotlib Set-up 40
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PYTHON PARALLELS 1.6.4
INSTALLATION
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Python Parallels 1.6.4 Set-up 42
1. From command prompt window, navigate to the folder ‘pp-1.6.4’
2. Type: python setup.py install
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PYPARSING 2.0.3 INSTALLATION
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PyParsing 2.0.3 Set-up 44
1. From command prompt window, navigate to the folder ‘pyparsing-2.0.3’
2. Type: python setup.py install
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SIX 1.9.0 INSTALLATION
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SIX 1.9.0 Set-up
1. From command prompt window, navigate to the folder ‘six-1.9.0’
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2. Type: python setup.py install
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PYTHON DATEUTIL 2.4.2
INSTALLATION
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Python Dateutil 2.4.2 Set-up
1. From command prompt window, navigate to the folder ‘python-dateutil-2.4.2’
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2. Type: python setup.py install
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PyQt INSTALLATION
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PyQt Set-up 50
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PyQt Set-up 51
PyQt Set-up 52
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PyQt Set-up 53
PyQt Set-up 54
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PyQt Set-up 55
PopGen INSTALLATION
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PopGen Set-up 57
Create a folder named “workspace”under “C:\” drive
PopGen Set-up 58
Copy the PopGen_1_1 folder to the “workspace” folder
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Addition of ‘PopGen ’folder to systemenvironmental variable ‘PYTHONPATH’
Right click on My Computer (or Computer or This PC)’ and go to Properties
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In the ‘Properties’ window, click on Advanced system settings
Addition of ‘PopGen ’folder to systemenvironmental variable ‘PYTHONPATH’ 60
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Click on Environment Variables
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Addition of ‘PopGen ’folder to systemenvironmental variable ‘PYTHONPATH’
Click on New
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Addition of ‘PopGen ’folder to systemenvironmental variable ‘PYTHONPATH’
Type PYTHONPATH in the variable name field and C:\workspace\PopGen_1_1in the variable value field
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Addition of ‘PopGen ’folder to systemenvironmental variable ‘PYTHONPATH’ 64
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Addition of ‘PopGen ’folder to systemenvironmental variable ‘PYTHONPATH’ 65
Addition of ‘PopGen ’folder to systemenvironmental variable ‘PYTHONPATH’ 66
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PopGen: Installation Check!
Once all the softwares are installed, restart the computer and navigate to “C:\workspace\PopGen_1_1\gui” and double click on PopGen.bat If you see a screen similar to the one shown below, your installation is successful.
Happy Synthesizing!!!
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Contact Information
Venu Garikapati, Georgia Institute of Technology, [email protected]
Daehyun You, Georgia Institute of Technology, [email protected]
Ram Pendyala, Georgia Institute of Technology, [email protected]
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Thank You!
