1
Indium Phosphide Quantum Dot-Based FRET Probe for the Analysis of Phosphatase Activity Rebecca K. Pontius 1 , Richard P. Brown 2 , Zeev Rosenzweig 2 1) Department of Chemistry, Clemson University, Clemson, SC 29634 2) Department of Chemistry and Biochemistry, UMBC, Baltimore, MD 21250 BACKGROUND Dephosphorylation is a tightly regulated process that occurs regularly in cells. It is the removal of a phosphate group from an organic molecule. In biological processes, it is carried out by the enzyme phosphatase. If the phosphatase enzyme becomes damaged or defective, dephosphorylation can become uncontrollable, resulting in an excesses of phosphorylated proteins. The tau hypothesis suggests that it is this buildup of the phosphorylated tau protein that results in neurofibrillary tangles, neuron death, and Alzheimer’s Disease. Alzheimer’s is one of the most terrible and expensive diseases in the modern world. Very little is understood about it, therefore there are no cures or preventative measures. In order to monitor dephosphorylation in biological systems, a probe would have to be accurate, water-soluble, non-toxic, and sensitive. EXPERIMENTAL DESIGN QUANTUM DOT RESULTS ACKNOWLEDGEMENTS The project is supported by the National Science Foundation Research Experience for Undergraduates (REU) Award No. CHE-1460653. The assistance and support of the Rosenzweig Lab Group and University of Maryland Baltimore County is recognized and greatly appreciated. 1. Meek, P.D., McKeithan, K., Shumock, G.T. Economic considerations in Alzheimer’s disease. Pharmacotherapy (1998). 18: 68-73. 2. Förster, T. Zwischenmolekulare Energiewanderung und Fluoreszenz. [Intermolecular energy migration and fluorescence]. Annalen der Physik. 1948; 437: 55–75. 3. Altintas, Y., Talpur, M. Unlu, M. Mutlugun, E. Highly Efficient Cd-Free Alloyed Core/Shell Quantum Dots. J. Phys. Chem. 2016; 120: 7885-7892. 4. Susumu, K., Uyeda, H., Medintz, I. Pons, T. Delehanty, J. Mattoussi, H. Enhanching the Stability and Biological Functionalities of Quantum Dots. J. Am. Chem. Soc. 2007; 129: 13987-13996. 5. Takakusa, H., Kikuchi, K., Urano, Y., Kojima, H., Nagano, T. A Novel Design Method of Ratiometric Fluorescent Probes. Chem. Eur. J. 2003; 9: 1479-1485. CONCLUSIONS AND FUTURE WORK The successful preparation of two of the three components of the probe and the assay suggests that this project should be continued. More research needs to be done on the synthesis of the phosphorylated fluorescein and the sequence in which the probe should be assembled. After testing the probe’s sensitivity in the test tube environment, it should be tested in the cellular environment. From there, it can move onto animal and human subjects. MISSION STATEMENT Design a probe that is sensitive enough to determine phosphatase specific activity and safe enough to use in cellular environments. -100 0 100 200 300 400 500 600 700 0 10 20 30 40 50 60 Relative Fluorescence Units at 515 nm Time (minutes) Fluorescence Emitted at 515 nm FDP Only FDP and 2E-7 units/mL Phosphatase FDP and 4E-7 units/mL Phosphatase FDP and 6E-7 units/mL Phosphatase FDP and 8E-7 units/mL Phosphatase FDP and 10E-7 units/mL Phosphatase FDP and 12E-7 units/mL Phosphatase FDP and 14E-7 units/mL Phosphatase -100 0 100 200 300 400 500 600 0 2 4 6 8 10 12 14 Fluorescence (RFU) at 515 nm and 35 mins Concentration of Alkaline Phosphatase (x10- 7 units/mL) Fluorescence Emitted at 515 nm after 35 Minutes Exposure 0 20000000 40000000 60000000 80000000 100000000 120000000 140000000 160000000 420 470 520 570 620 670 Intensity Wavelength (nm) Fluorescence Excited from 400 nm and 460 nm 750nM FDP Only at 400 nm 750nM FDP and Phosphatase 18 hours at 400 nm 750nM FDP Only at 460 nm 750nM FDP and Phosphatase 18 hours at 460 nm -0.01 0 0.01 0.02 0.03 0.04 0.05 300 350 400 450 500 550 600 650 700 Absorbance Wavelength (nm) UV-Vis Absorbance 750nM FDP only 750nM FDP and phopshatase 18 hours 0 0.01 0.02 0.03 0.04 0.05 0.06 0.07 0.08 0.09 0.1 0 50000000 100000000 150000000 200000000 250000000 300000000 375 425 475 525 575 Absorption Intensity (counts) Wavelength (nm) Optical Properties of Indium Phosphide/Zinc Sulfide Alloy Core with Zinc Sulfide Shell Quantum Dots Fluorescence Absorption PHOSPHATASE ASSAY RESULTS FIGURE 2: COMPONENTS OF THE QUANTUM DOT BASED-FRET PROBE FIGURE 2: SYNTHESIS OF InPZnS/ZnS CORE/SHELL QUANTUM DOTS 3 FIGURE 4: SYNTHESIS OF PHOSPHORYLATED FLUORESCEIN LIGAND 5 This sensitive and water-soluble probe will borrow the best properties from three separate species. The quantum dot provides sensitivity, the PEG derivative provides water solubility, and the fluorescein dye provides a quenched fluorescence that is revealed with the cleavage of the phosphate groups. FIGURE 5: FLUORESCENCE AND ABSORPTION SPECTRA OF QUANTUM DOTS In order for the quantum dots to act as a successful donor species, they must emit light within the absorption spectrum of fluorescein (Figure 6a). The emission of these quantum dots has a peak at 483 nm, which is suitable to induce fluorescence in fluorescein. The absorption spectrum shows a strong absorption in the low 400nm range. This is important because in order to avoid direct excitation of the fluorescein, the wavelength of light that excites the quantum dot must be far from fluorescein’s absorption peak (Figure 6a). FIGURE 1: THE CONCEPT OF FLUORESCNECE RESONANCE ENERGY TRANSFER FIGURE 6 (a-d): CALCULATING SPECIFIC ACTIVITY OF ALKALINE PHOSPHATASE 6a: Effect of 18 hours Phosphatase Exposure on Fluorescein Diphosphate Absorbance A distinct change in absorption around 480 nm is observable after the cleavage of the two phosphate groups from fluorescein diphosphate by alkaline phosphatase. 6b: Effect of 18 hours Phosphatase Exposure on Fluorescein Diphosphate Fluorescence at 400 nm and 460 nm A distinct change in fluorescence is observable when excited at 460 nm, which is within the fluorescence spectrum of the quantum dots (Figure 4). 6c: Effect of Increasing Concentrations of Phosphatase in Fluorescein Diphosphate Assuming one unit will hydrolyze 500 nmol in a total reaction volume of 1 mL in 1 minute at 37°C, the optimal concentration would be 10E-7 units/mL. Each data point is an average of three trials. 6d: Specific Activity of Phosphatase in Fluorescein Diphosphate The specific activity of the enzyme is calculated using this graph. Signal change is related to the activity using enzyme kinetics equations. FIGURE 3: SYNTHESIZING DHLA-PEG 400 -NH 2 4 ~480 nm ~400 nm ~520 nm If the donor species (quantum dot) and acceptor species (organic fluorophore) come within 1-10nm of each other, the donor species, instead of fluorescing, will donate its energy to the acceptor, who will become excited and then release its energy as photons lower in energy than the incident light 2 . λ 400nm λ 520nm λ 400nm λ 520nm FRET In(ac)3 Myristic Acid Octadecene High Vacuum 100°C 1 hr Cool to RT P(TMS3)3 Octadecene InPZnS Core 230°C 3 hrs Zinc Stearate 1-Dodacanethiol RT 225°C (inject) 285°C 10 min 230°C 1 hr InPZnS/ZnS Core/Shell a) (BnO) 2 PN(iPr) 2 , 1H-tetrazole, NEt 3 , mCPBA, CHCl 3 ; b) N-hydroxysuccinimide, EDC · HCl, CHCl 3 ; c) DMF ; d) Pd/C, H 2 c) Fluorescein InPZnS/ZnS QD a) Mesyl-Cl, THF, NaN 3 , H 2 O; b) (Ph) 3 P, EtOAc, 1M HCl ; c)Thioctic acid, DCC/DMAP, DCM d) (Ph) 3 P, THF ; e) NaBH 4 , MeOH/H 2 O d) a) b) c) d) e) NSF REU CHEM 2016 Zinc Stearate 1-Dodecanethiol

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Page 1: NSF REU CHEM 2016 Indium Phosphide Quantum Dot-Based …

Indium Phosphide Quantum Dot-Based FRET Probe for the Analysis of Phosphatase Activity

Rebecca K. Pontius1, Richard P. Brown2, Zeev Rosenzweig2

1) Department of Chemistry, Clemson University, Clemson, SC 29634 2) Department of Chemistry and Biochemistry, UMBC, Baltimore, MD 21250

BACKGROUND

Dephosphorylation is a tightly regulated process that occurs regularly in cells. It is the removal of a phosphate group from an organic molecule. In biological processes, it is carried out by the enzyme phosphatase. If the phosphatase enzyme becomes damaged or defective, dephosphorylation can become uncontrollable, resulting in an excesses of phosphorylated proteins. The tau hypothesis suggests that it is this buildup of the phosphorylated tau protein that results in neurofibrillary tangles, neuron death, and Alzheimer’s Disease. Alzheimer’s is one of the most terrible and expensive diseases in the modern world. Very little is understood about it, therefore there are no cures or preventative measures. In order to monitor dephosphorylation in biological systems, a probe would have to be accurate, water-soluble, non-toxic, and sensitive.

EXPERIMENTAL DESIGN

QUANTUM DOT RESULTS

ACKNOWLEDGEMENTS The project is supported by the National Science Foundation Research Experience for Undergraduates (REU) Award No. CHE-1460653. The assistance and support of the Rosenzweig Lab Group and University of Maryland Baltimore County is recognized and greatly appreciated.

1. Meek, P.D., McKeithan, K., Shumock, G.T. Economic considerations in Alzheimer’s disease.

Pharmacotherapy (1998). 18: 68-73. 2. Förster, T. Zwischenmolekulare Energiewanderung und Fluoreszenz. [Intermolecular energy

migration and fluorescence]. Annalen der Physik. 1948; 437: 55–75. 3. Altintas, Y., Talpur, M. Unlu, M. Mutlugun, E. Highly Efficient Cd-Free Alloyed Core/Shell Quantum

Dots. J. Phys. Chem. 2016; 120: 7885-7892. 4. Susumu, K., Uyeda, H., Medintz, I. Pons, T. Delehanty, J. Mattoussi, H. Enhanching the Stability and

Biological Functionalities of Quantum Dots. J. Am. Chem. Soc. 2007; 129: 13987-13996. 5. Takakusa, H., Kikuchi, K., Urano, Y., Kojima, H., Nagano, T. A Novel Design Method of Ratiometric

Fluorescent Probes. Chem. Eur. J. 2003; 9: 1479-1485.

CONCLUSIONS AND FUTURE WORK

The successful preparation of two of the three components of the probe and the assay suggests that this project should be continued. More research needs to be done on the synthesis of the phosphorylated fluorescein and the sequence in which the probe should be assembled. After testing the probe’s sensitivity in the test tube environment, it should be tested in the cellular environment. From there, it can move onto animal and human subjects.

MISSION STATEMENT

Design a probe that is sensitive enough to determine phosphatase specific activity and safe enough to use in cellular environments.

-100

0

100

200

300

400

500

600

700

0 10 20 30 40 50 60

Re

lati

ve

Flu

ore

sce

nce

Un

its

at

515

nm

Time (minutes)

Fluorescence Emitted at 515 nm

FDP Only

FDP and 2E-7 units/mL Phosphatase

FDP and 4E-7 units/mL Phosphatase

FDP and 6E-7 units/mL Phosphatase

FDP and 8E-7 units/mL Phosphatase

FDP and 10E-7 units/mL Phosphatase

FDP and 12E-7 units/mL Phosphatase

FDP and 14E-7 units/mL Phosphatase

-100

0

100

200

300

400

500

600

0 2 4 6 8 10 12 14

Flu

ore

sce

nce

(R

FU

) a

t 51

5 n

m a

nd

35

min

s

Concentration of Alkaline Phosphatase (x10-7 units/mL)

Fluorescence Emitted at 515 nm after 35 Minutes Exposure

0

20000000

40000000

60000000

80000000

100000000

120000000

140000000

160000000

420 470 520 570 620 670

Inte

nsi

ty

Wavelength (nm)

Fluorescence Excited from 400 nm and 460 nm

750nM FDP Only at400 nm

750nM FDP andPhosphatase 18 hoursat 400 nm750nM FDP Only at460 nm

750nM FDP andPhosphatase 18 hoursat 460 nm

-0.01

0

0.01

0.02

0.03

0.04

0.05

300 350 400 450 500 550 600 650 700

Ab

sorb

an

ce

Wavelength (nm)

UV-Vis Absorbance

750nM FDP only

750nM FDP andphopshatase 18hours

0

0.01

0.02

0.03

0.04

0.05

0.06

0.07

0.08

0.09

0.1

0

50000000

100000000

150000000

200000000

250000000

300000000

375 425 475 525 575

Ab

sorp

tio

n

Inte

nsi

ty (

cou

nts

)

Wavelength (nm)

Optical Properties of Indium Phosphide/Zinc Sulfide Alloy Core with Zinc Sulfide Shell Quantum Dots

Fluorescence

Absorption

PHOSPHATASE ASSAY RESULTS

FIGURE 2: COMPONENTS OF THE QUANTUM DOT BASED-FRET PROBE

FIGURE 2: SYNTHESIS OF InPZnS/ZnS CORE/SHELL QUANTUM DOTS3

FIGURE 4: SYNTHESIS OF PHOSPHORYLATED FLUORESCEIN LIGAND5

This sensitive and water-soluble probe will borrow the best properties from three separate species. The quantum dot provides sensitivity, the PEG derivative provides water solubility, and the fluorescein dye provides a quenched fluorescence that is revealed with the cleavage of the phosphate groups.

FIGURE 5: FLUORESCENCE AND ABSORPTION SPECTRA OF QUANTUM DOTS

In order for the quantum dots to act as a successful donor species, they must emit light within the absorption spectrum of fluorescein (Figure 6a). The emission of these quantum dots has a peak at 483 nm, which is suitable to induce fluorescence in fluorescein. The absorption spectrum shows a strong absorption in the low 400nm range. This is important because in order to avoid direct excitation of the fluorescein, the wavelength of light that excites the quantum dot must be far from fluorescein’s absorption peak (Figure 6a).

FIGURE 1: THE CONCEPT OF FLUORESCNECE RESONANCE ENERGY TRANSFER

FIGURE 6 (a-d): CALCULATING SPECIFIC ACTIVITY OF ALKALINE PHOSPHATASE

6a: Effect of 18 hours Phosphatase Exposure on Fluorescein Diphosphate Absorbance

A distinct change in absorption around 480 nm is observable after the cleavage of the two phosphate groups from fluorescein diphosphate by alkaline phosphatase.

6b: Effect of 18 hours Phosphatase Exposure on Fluorescein Diphosphate Fluorescence at 400 nm and 460 nm

A distinct change in fluorescence is observable when excited at 460 nm, which is within the fluorescence spectrum of the quantum dots (Figure 4).

6c: Effect of Increasing Concentrations of Phosphatase in Fluorescein Diphosphate

Assuming one unit will hydrolyze 500 nmol in a total reaction volume of 1 mL in 1 minute at 37°C, the optimal concentration would be 10E-7 units/mL. Each data point is an average of three trials.

6d: Specific Activity of Phosphatase in Fluorescein Diphosphate

The specific activity of the enzyme is calculated using this graph. Signal change is related to the activity using enzyme kinetics equations.

FIGURE 3: SYNTHESIZING DHLA-PEG400-NH24

~480 nm

~400 nm ~520 nm

If the donor species (quantum dot) and acceptor species (organic fluorophore) come within 1-10nm of each other, the donor species, instead of fluorescing, will donate its energy to the acceptor, who will become excited and then release its energy as photons lower in energy than the incident light2.

λ

400nm

λ

520nm

λ

400nm

λ

520nm FRET

In(ac)3 Myristic Acid Octadecene High Vacuum

100°C 1 hr

Cool to RT

P(TMS3)3 Octadecene

InPZnS Core 230°C

3 hrs

Zinc Stearate 1-Dodacanethiol

RT 225°C (inject)

285°C 10 min

230°C 1 hr

InPZnS/ZnS Core/Shell

a) (BnO)2PN(iPr)2 , 1H-tetrazole, NEt3 , mCPBA, CHCl3 ; b) N-hydroxysuccinimide, EDC · HCl, CHCl3 ; c) DMF ; d) Pd/C, H2

c)

Fluorescein InPZnS/ZnS QD

a) Mesyl-Cl, THF, NaN3, H2O; b) (Ph)3P, EtOAc, 1M HCl ; c)Thioctic acid, DCC/DMAP, DCM d) (Ph)3P, THF ; e) NaBH4, MeOH/H2O

d)

a) b)

c) d)

e)

NSF REU CHEM 2016

Zinc Stearate 1-Dodecanethiol