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Int.J.Curr.Microbiol.App.Sci (2018) 7(12): 676-689
676
Original Research Article https://doi.org/10.20546/ijcmas.2018.712.084
Salt Tolerant Paddy Varieties, Showing Resistance to Brown Spot
during Nursery Stage
Vikash Chandra1*
, Dheeraj K. Tiwari1, A.K. Singh
2, Sunil Singh
1, Ratna Sahay
1,
Archana Singh1 and Ramesh Chandra Maurya
1
ICAR-Krishi Vigyan Kendra, Unnao-229881Uttar Pradesh (India)
*Corresponding author
A B S T R A C T
Introduction
Paddy (Oryza sativa L.) is a starch food crop
ranks third in world after maize and wheat to
supply feed for world population and enjoy
first position in Asia (Aryal et al., 2016). In
India paddy is cultivated in 43.86 million ha.,
with the annual production level 104.80
million tones and productivity of 2390 kg/ha
(Agriculture - Statistical Year Book India
2017). Paddy crop is suffered by a number of
diseases and pests out of which disease brown
spot caused by Bipolaris oryzae Ou (1972)
and is considered to be chronic one affecting
thousands hectares of paddy crop, thus
causing not only in terms of incurring losses in
grain yield 4-52% of the paddy crop (Barnwal
et al., 2013), but historically causing famous
Bengal famine in 1942 and killing millions of
innocent people of the country (Chakrabarti et
International Journal of Current Microbiology and Applied Sciences ISSN: 2319-7706 Volume 7 Number 12 (2018) Journal homepage: http://www.ijcmas.com
Brown spot caused by (Bipolaris oryzae) is a persistent disease of Paddy (Oryza sativa L.)
and associated with reduction in economic yield in the areas under dry and semi dry
climate, with the nutrient poor field. Part of the paddy area under cultivation is salt
affected in India, having longer water stagnation capacity, though having deficiency of
organic matter and other essential nutrient, where during monsoon season only paddy is
grown. In the present study twelve varieties of paddy were evaluated in salt affected soil,
during nursery conditions, and was observed that variety developed for salt tolerance
(CSR30. CSR 36 and CSR 46) to BS disease in all the parameter like Disease incidence
(DI), Disease Index and AUDPC value whereas, these parameter were highest for scented
variety (Kala Namak) having GI in Uttar Pradesh (India) have disease incidence (69.75
and 66.25%) fine grained variety Ganga Kavery with average DI of 60 % and 60.75%,
were more susceptible to the disease in both year (2017 and 2018). During the observation
it was depicted that both DI and AUDPC values varies according to the disease incidence.
It was hypothesized that absorption of Silicon a beneficial nutrient (a major mineral
element conferring resistance to the BS) and conferring Salt tolerance to the plant varieties
salt tolerant varieties (CSR30, CSR36 and CSR 42) is more efficient and then the other
available varieties. Further, it was also observed that in the salt affected main field, along
with normal rainfall reduces disease incidence without any chemical fungicide application.
K e y w o r d s
AUDPC, Brown
spot, Disease
incidence, Disease
index, Salt tolerant
and Silicon
Accepted:
07 November 2018
Available Online: 10 December 2018
Article Info
Int.J.Curr.Microbiol.App.Sci (2018) 7(12): 676-689
677
al., 2001; Padmanabhan, 1973). The disease is
prevalent under dry and semi-dry conditions
and has been noted to reduce yield by
reducing germination percentage of infected
seeds, photosynthetic Leaf area reduction,
resulting in the reduction of yield. Infection
results in weakening of the plants (Wang et
al., 1978; Sundar, 2014). Apart from paddy
field or soils, paddy straw and stubble,
infected paddy seeds are likely sources of
primary inoculums for paddy brown spot
epidemics. The disease is reported to be more
severe in nutrient deficient soil especially K as
limiting factor aggravate the disease (Zadoks
1974) India is having 6.74 million ha area
under soil salinity (Mandal et al., 2009) of
which approximately of 2.46 million ha soil is
suffering from water logging in country,
where paddy cultivation, is practiced, this kind
of soil is basically low in nutrient content
especially in essential nutrient Phosphorus (P)
(Singh et al., 2006; Agostinho et al., 2017)
and Silicon (Si) which is beneficial element
for plant growth especially for the members of
family of Poacae and cucurbitacae (Epstein
E. (2009). Epstein and Bloom, 2005; Ma and
Yamaji, 2008) required for plant sustainability
and confers disease resistance against B.
Oryzae (Nanda et al., 1984; Yamauchi et al.,
1987; Leandro et al., 2014; Datnoff et al.,
1990; Datnoff et al., 1991) which is normally
available to in the soil at PH range of 5.5-6.5
as mono silicic acid (McKeague and Cline
(1963) which is the form absorbed by Plant.
Paddy is cultivated in the form of Direct
Seeded Rice in dry or semi dry areas,
Transplanted rice in large area under irrigation
and SRI method in few pockets. For the
transplantation of paddy, seeds are grown in
nursery (1/10th
area of field to be transplanted)
when the seedlings become of 25-30 days old,
seedlings are uprooted and transplanted in the
field..
Raising of disease free nursery is the prime
importance, as the soft seedling is prone to be
attacked by large number of diseases and
Insect Pests, which if not controlled reaches to
the main paddy field and affects crop growth
followed by yield (Ibaraki T. 1988).
Interaction among availability of plant nutrient
in the soil, climatic condition, presence of
pathogen inoculums, and plant variety plays
the deciding role in development of disease.
Although biological and chemical control is
available for the management of brown leaf
spot (Gupta V et. al 2018), host plant
resistance is most economical and
environment friendly and it is desirable to
have plant variety in hand having endurance to
multiple biotic and abiotic stresses. In the
present study, nursery of twelve varieties of
the paddy were raised at the Farm of ICAR-
Krishi Vigyan Kendra Dhaura Unnao
(Longitude 80.6604483 and Latitude
26.8154276) during kharif seasons of 2017
and 2018 using scientific methodology viz,
and proper seed treatment, fertilization,
irrigation etc. Crops were monitored routinely
for incidence of diseases and pests and data
were recorded with the objectives to find out
suitable variety with minimum disease
incidence.
Materials and Methods
Paddy variety used for study
In the present study following twelve varieties
were evaluated, fine grained scented variety
Kala Namak, Kala Namak Dwarf, Varieties
showing tolerance against soil salinity
(CSR30, CSR 36, CSR46), fine grained high
yielding varieties (NDR3112, NDR2064,
NDR359, Ganga Kaveri, NP 360, Shri Ram
502, and Chinnour).
Soil condition and field preparation
Soil of Krishi Vigyan Kendra, Farm located at
Longitude 80.6604483 and Latitude
26.8154276 being salt affected with PH of
nursery field 8.6, Electrical Conductivity 0.29
ms/cm., Organic matter content 0.31%, clayey
Int.J.Curr.Microbiol.App.Sci (2018) 7(12): 676-689
678
in nature, having hard calcareous layer below
the 8-10 feet, soil is inherently low in essential
element (NPK).Nursery was sown after wheat
harvest, wheat straw (left over after crop
harvest using combine harvester) was
incorporated in the field by ploughing,
followed by flooding, and application of 1
tone /1000 m2 FYM. Field was flood irrigated
and well ploughed with cultivator and
Rotavatar and 40 kg /ha DAPS and 10 Kg
MOP/1000 m2 was broadcasted.
Seed treatment
Seeds of all the varieties were soaked
overnight in water and treated with
Carbendazim 50% WP (trade name Crostin by
Shivalik Agro Chemicals) 2.5 gm/kg of seed,
Plantimycin (Aries Agro) 6gm/20kg of seed,
and Tricyclazole 75%W.P. (trade name
Blaster manufactured by Sulphur Mills
limited) 0.6g/kg seeds and kept in shade for
germination.
Sowing of seed and time
Seeds of each variety were taken at the rate of
35 kg/ha for nursery raising, and Pre-
germinated seeds were broadcasted in 1000
M2
area to transplant 1 ha paddy field. The
nursery was shown every year 25th
of May.
Crop management
To control weeds in paddy nursery herbicide
Pyrazosulfuron ethyl 10 WP (Sathi
manufactured by UPL limited) was sprayed @
215 gm/ha. On the 3rd
day after the
broadcasting of seeds, excess water was
removed from the field. On 7th
day
supplementary irrigation was given in the field
by Flood irrigation. 60 Kg Urea and 20 kg
Zinc Sulfate were broadcast in the field for
good seedling growth.
Disease survey
Nursery of paddy was monitored routinely
from the date of sowing, for the incidence of
disease and pest data were recorded from the
year kharif 2017 and kharif 2018.
Microscopy
Affected plant sample was brought to the
laboratory and microscopy of leaf sample was
done as per method given by Quintana et al.,
(2017). The sample was observed at 100X
using light microscope CosLab model HL-10.
Disease incidence study
The data for disease incidence were recorded
at 7 days interval from the days of nursery
sowing, to assess the incidence of disease on
different varieties 1X1m2 area of each plot
were selected randomly and number of
infected plants were counted over total
population. Disease scoring was done by using
standard disease rating scale of IRRI, 2002,
Aryal L., 2016 (Table 1).
Disease index
Disease severity was calculated as Disease
index on 21 days after 28 days after nursery
sowing of paddy nursery, disease index was
calculated by the formula given by (Chaube
HS and Pundhir, 2009).
DI=(0(X0)+1(X1)+2(X2)+3(X3)-------+n(Xn)/
X0+X1+X2+X3-------+Xn)X100
Where X represents no of entries within a
grade and 0-and is the grade of disease as per
disease rating scale. For the calculation of
disease intensity 1X1M2 areas was selected in
each variety and 25 plants of each variety was
selected randomly for the calculation of
disease index
Int.J.Curr.Microbiol.App.Sci (2018) 7(12): 676-689
679
AUDPC curve study
The progress of the disease within a nursery
plant population was calculated by under
disease progress curve (AUDPC), which gives
the quantitative measure of disease
development and the rate of disease
development (Reynolds et al., 1997), also
assist in to group varieties under distinct
extent of hostility to the pathogen. It was
calculated by summation of disease incidence
observed over a fixed period of time, a
formula given by Campbell et al., (1990)
given as follows by
Where n is the number of observations
Yi =is disease incidence at the ith
day
Ti = day on which the disease was scored
Results and Discussion
Symptomatology
Initial symptoms of the disease were observed
in the in all the varieties as small spots on
leaves which enlarges up to of 1-2.5cm in
length (Fig. 1A). Likewise, symptoms also
appeared on leaf sheaths and coleoptiles. The
affected nursery can often be seen from a
distance as sun burn appearance due to the
mortality of apical leaves of the seedlings,
disease were more severe on Ganga Kaveri,
Kala Namak, Kala Namak dwarf, Sri Ram 502
and NP 360 where more or less all the plant
were infected, However few spots were seen
on the variety CSR30, CSR 36, CSR46,
NDR3112, NDR2064, NDR359 (Fig. 1B-M).
However when all the varieties were
transplanted in field at a spacing of 25X25 cm
using 2-3 seedling per hill disease incidence
was reduced to negligible level without any
chemical application.
Microscopy
In light microscope conidia of Bipolaris
oryzae were seen as club shaped to cylindrical,
generally curved, light brown to golden
brown, with 6 - 12 horizontal cell walls, Data
not shown, similar to described earlier in the
literature (Subramanian, 1966, Lidia Quintana
2017).
Incidence of the disease
Incidence of the disease in all paddy variety
was recorded at seven days, fourteen days,
twenty one days and after twenty eight days
for the two consecutive years highest average
(Avrg) disease incidence was observed in
paddy variety fine grained scented variety
Kala Namak (KN) (69.75% and 66.25%)
followed by non scented fine grained variety
Ganga Kaveri (G.Kaveri) (57.5% and 60.75%)
while lowest incidence was observed for the
varieties tolerant to the salinity (CSR 30
CSR36 and CSR 46) during the survey it was
also observed that variety like Shriram 502
(SR 502), NDR 3112, NDR 2064, NDR 359,
NP 360 and Chinnour have moderate level of
disease resistance of whose data have been
given below in table 3 and Figure 1, based
upon disease rating scale, Host Response (HR)
have been also given in the table.
Disease Index (DI)
Highest DI was for the variety Kala Namak
(583 and 611 after 21 days (d) and 28 d in
2017 and 568 and 598 in same time interval in
2018) followed by Ganga Kaveri 534 and 593
after 21 days (d) and 28 d in 2017 and 520 and
589 in same time interval in 2018), followed
by SR 502 and Kala Namak Dwarf and NP
360 NDR 3112 NDR 2064 NDR 359 and
Chinnour data is given in table 4 and figure 2.
While lowest Disease intensity value was the
variety Developed to tolerate salt Stress viz
CSR30, CSR36, CSR 46. When
Int.J.Curr.Microbiol.App.Sci (2018) 7(12): 676-689
680
two years DI Value was plotted against
Variety it certainly shows that variety Kala
Namak Ganaga Kaveri, are more susceptible
to the disease followed by Shriram 502, Kala
Namak dwarf, NP 360 where as, Chinnour,
NDR 359, NDR2064, NDR 3112 shows
moderate level of resistance to the disease to
the disease and CSR30, CSR36, CSR 46 were
resistant to the disease.
Table.1 The disease rating scale used for screening of rice varieties against brown spot caused
by Bipolaris oryzae Scale % infection (Plant Disease (Severity) Host response
1 No incidence Immune
2 Less than 1% Highly Resistant
3 1 – 3% Resistant
4 4 – 5 % Resistant
5 11 – 15% Moderately Resistant
6 16 – 25% Moderately Resistant
7 26 – 50% Susceptible
8 51 – 75% Susceptible
9 76 – 100% Highly susceptible
Table.2 Incidence of disease in all the 12 variety for the year 2017-18 and 2018-19 Variety 2017-18 2018-19 HR
Plant Disease incidence (%) Plant Disease incidence (%)
Days 7 d 14 d 21 d 28 d Avrg 7 d 14 d 21 d 28 d Avrg
KN1 41 68 81 89 69.75 37 64 82 87 66.25 S
KND2 18 32 49 61 40 26 39 50 58 43.25 S
CSR30 3 5 11 25 11 4 7 18 27 14 I
CSR 36 1 7 11 18 9.25 0 5 9 13 6.75 I
CSR46 0 5 13 15 8.25 2 4 6 18 7.5 I
NDR3112 17 23 31 39 27.5 14 25 36 51 29 R
NDR2064 9 19 27 29 21 9 17 29 42 24.25 R
NDR359 6 15 28 33 20.5 4 11 31 39 21.25 R
G.Kaveri3 24 49 78 89 60 22 51 79 91 60.75 S
NP 360 15 31 49 59 38.5 14 28 47 54 35.75 S
SR 5024 25 37 52 68 45.5 21 27 53 71 43 I
Chinnour 18 27 31 37 28.25 11 19 28 42 25 R
Table.3 Calculated value of disease index for all the variety under evaluation Variety Disease Index:2017-18 Disease Index:2018-19
21 d 28 d 21 d 28 d
Kala Namak 583 611 568 598
Kala Namak Dwarf 421 489 443 479
CSR30 169 198 164 186
CSR 36 151 183 157 181
CSR46 149 168 132 167
NDR3112 297 318 279 301
NDR2064 278 297 293 319
NDR359 237 262 243 369
Ganga Kaveri 534 593 520 589
NP 360 393 428 381 405
Shri Ram 502 468 509 477 511
Chinnour 256 302 245 298
Int.J.Curr.Microbiol.App.Sci (2018) 7(12): 676-689
681
Figure.1A: Typical brown spot symptoms on paddy varieties, Symptoms on, B. Kala Namak Dwarf C. Kala Namak D. NDR352 E.
NDR 3112 F. Ganga Kavery G. CSR 36 H.CSR 42 I. CSR 46 J. NDR2064 K. ShriRam 502, L Chinnour M. NP 360
A B C D E
F G H I J
K L M
Int.J.Curr.Microbiol.App.Sci (2018) 7(12): 676-689
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Fig.2 2A and 2B, Graphical representation of plant disease incidence of all the varieties in the
2017-18 and 2018-19
Fig.2 A
Fig.2B
Int.J.Curr.Microbiol.App.Sci (2018) 7(12): 676-689
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Figure.4 4A and 4B, Graphical representation of AUDPC obtained against disease in incidence
of all the 12 varieties for the year 2017-8 and 2018-19
Figure 4 A
Figure 4 B
Int.J.Curr.Microbiol.App.Sci (2018) 7(12): 676-689
684
Fig.3 Graphical reprenstaion of Disease index of all the varieties in the 2017-18 and 2018-19
Table.4 Resistant category for twelve different varieties of rice based on mean AUDPC values
on leaves at nursery condition in salt affected soil
Mean AUDPC Value Host Response Code
0-250 Immune I
250-500 Resistance R
500-750 Moderately Resistance MR
750-1000 Susceptible S
1000 and above Highly Susceptible HS
Table.5 Area under disease progress curve value of two years of all the variety under screening
AUDPC 2017-18
Var.→
Kala
Namak
Kala
Namak
dwarf
CSR
30
CSR
36
CSR
46
NDR
3112
NDR
2064
NDR
359
Ganga
Kaveri
NP
360
Shri
Ram
502
Chinnour
AUDPC
2017-18
1484 843.5 210 154 178.5 574 455 437.5 1284.5 819 948.5 598.5
AUDPC
2018-19
1456 917 283.5 143.5 140 654.5 500.5 444.5 1305.5 763 882 514.5
Mean
AUDPC
1470 880.25 246.75 148.75 159.25 614.25 477.75 441 1295 791 915.25 556.5
Host
Response
HS S I I I MR R R HS S S MR
Area under disease progress curve
Based upon plant disease incidence data
recorded after 7 days interval and given in
table 2), Area Under Disease Progress Curve
was calculated for all the 12 varieties by the
formula as given above with value of n equal
to 4 and Highest AUDPC value was obtained
for the Kala Namak (1484 and 1456 for 2017-
18 and 2018-19) and Ganga Kaveri (1284.5
Int.J.Curr.Microbiol.App.Sci (2018) 7(12): 676-689
685
and 1305.5 for 2017-18 and 2018-19)
followed by Shri Ram 502, Kala Namak
dwarf and NP 360 value given in the table 4
while lowest value of AUDPC was for variety
CSR 36, (154 and 143.5) CSR 46 (178.5 and
140) and CSR 30 (210 and 230) for both the
year 2017-18 and 2018-19 where as moderate
AUDPC value was obtained series and
NDR359 NDR 2064, NDR3112 and
Chinnour. When AUDPC Value was plotted
against the plant variety two peaks were
obtained in both the year one was for Kala
Namak and second was for Ganga Kaveri
followed by Shriram 502, Kala Namak Dwarf
and NP 360, while least was gain for CSR 36
CSR 46, CSR 30. Based upon AUDPC value
a scale was developed to recognise host
Response which is given in table 4, and host
response is given in table 5 (Fig. 4).
From the figures 3 it is clear that disease
progresses with increase in time, and this
increase was more in the nursery of Kala
Namak, Ganga Kaveri followed by Shri Ram
502, Kala Namak dwarf, NP 360, and NDR
Series and Chinnour, disease progresses was
least in case of CSR series of varieties
(especially bred for salt tolerance).
There was wide variation in the timing of
symptoms development in all the twelve
paddy varieties. The earliest symptoms
reported in the paddy variety Kala Namak
(Local scented rice) akin to Basmati Rice
followed by Ganga Kaveri, Shri Ram 502,
Kala Namak Dwarf, NP 360 and. Incidence of
the disease increases with the time in all the
12 varieties and it was observed that Highest
disease incidence was for variety Kala Namak
and Ganga Kaveri followed by Shri Ram 502,
Kala Namak Dwarf, NP 360, lowest disease
incidence was observed for the varieties
developed for salt tolerance viz CSR 36, CSR
42, CSR 46 and severity of the disease and
Area Under Disease Progress curve also
varies with variety as shown in the disease
index table 3 and 5. Huge research data is
available on the effect of plant nutrition and
effect of climatic condition in incidence of
brown spot in paddy. With the data recorded
during study the sowing of paddy nursery at
end of May, where there is no rainfall,
artificial irrigation is provided to supplement
the water requirement. As considered
Bipolaris oryzae is mostly seed, soil & weed
born pathogen (Ellis et al., 1971; Nyvall et
al., 1999; Biswas et al., 2008) and require
optimum temperature 25°C and relative
humidity of >89% and free water on leaves
(Dasgupta et al., 1977; Percich, 1997;
Minnatullah et al., 2002) these conditions are
easily met to the early sown nurseries as of
Pre-Monsoon activities which favour earlier
disease development. Incidence of the disease
vary significantly in all the varieties, variety
developed for salt affected soil have lowest
disease incidence, lowest disease index and
AUDPC value, reason may be due to effect of
plant nutrition, Si is seems to be low in salt
affected soil (Liang et al., 1994; Tavakkoli et
al., 2011; Datnoff, 1991; Coskun et al., 2016).
to young seedlings, the salt tolerance is high
for these varieties (CSR30, CSR-36, CSR-
46), which may be strengthened by Si by
binding Na+ to the root zone of paddy (Gong
et al., 2006; Rios et al., 2017; Fageria et al.,
2014), and wheat Ahmad et al., (1992) by
reducing rate of transpiration (Agarie et al.,
1998; Nanayakkara et al., 2008) thus reducing
free water availability in plant surface
required for pathogen germination,
silicification to the leaves surface Flowers T.
J (1994), also reduces rate of penetration by
the pathogen, these varieties, may have
adoption for salt tolerance by more efficient
uptake of Silicon. Si is an semi essential plant
nutrient conferring resistance to plant against
fungal pathogen (Leandro et al., 2014) higher
uptake of silicon is also reported to stop
pathogen for utilisising host ethylene
pathways (Fadzilla et al., 1997 and Jonas Van
Bockhaven et al., 2015). This is also in favour
Int.J.Curr.Microbiol.App.Sci (2018) 7(12): 676-689
686
of salt tolerant variety being resistance to
Bipolaris oryzae. It is also observed
previously paddy variety differ in utilization
of silicon from the soil. (Ma et al., 2007;
Sahebi et al., 2017), and varietal difference
were also observed in the incidence of brown
spot disease Magar (2015), varieties like Kala
Namak, Ganga Kaveri, are tall in height and
very much prone to the lodging, which may
be due to deficiency of Silicon in the soil and
deferential ability of genotype of paddy to
uptake silicon. Varieties like Kala Namak
Dwarf, NP 360, Shri Ram 502,
NDR3112.NDR 359 and NDR 2064, have
shown partial resistance to the disease may be
up taking Si in some amount which is in
support of work done by (Idris et al., 1975;
Majumadar et al., 1985). Secondly closer
spacing in the nursery may have provided
conducive microclimate for the disease spread
among population Mondal et al., (2013).
During observation of symptoms on crop
management, one interesting observation was
made when the infected nursery was
transplanted in the main paddy field followed
by regular rainfall due to monsoon, incidence
of the disease was reduced significantly
without any application of the chemical
application this might be due to proper
spacing and monsoon downpour may have
washed the infected propagule from the plant
surface, and due to water stagnation in the
field (having salt affected soil) having high
water retention capacity in soil, conidia were
not able to germinate and subsequent crop life
cycle was free from the disease (Brown spot).
In the Survey of twelve paddy varieties for
the two consecutive years (2017-18 and 2018-
19), have revealed that Variety Kala Namak
and Ganga Kaveri were highly susceptible to
the disease followed by Shri Ram 502 Kala
Namak dwarf, were fall in susceptible
category where as by NDR 3112, NDR 359,
NDR 2064 and Chinnour have shown some
level of resistance to the pathogen at nursery
conditions, whereas Variety bred for the salt
tolerance viz CSR30, CSR32, CSR46 were
more or less immune to the disease, having
drawback of being bold seeded, and thus less
acceptance among Farmers. Thus there is
need to understand the mechanism of
susceptibility and resistance in all the variety
and also to identify the genetics mechanism of
Indian paddy variety, so that resistance
mechanism of the coarse seeded salt tolerant
variety can be transferred to the fine grain
scented Rice varieties viz., Kala Namak a tall
scented paddy variety, having higher
preference among farmers, high market value,
and other high yielding varieties like Sri Ram
502, Kala Namak Dwarf, NP 360 and other
fine grained high yielding varieties.
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How to cite this article:
Vikash Chandra, Dheeraj K. Tiwari, A.K. Singh, Sunil Singh, Ratna Sahay, Archana Singh and
Ramesh Chandra Maurya. 2018. Salt Tolerant Paddy Varieties, Showing Resistance to Brown
Spot during Nursery Stage. Int.J.Curr.Microbiol.App.Sci. 7(12): 676-689.
doi: https://doi.org/10.20546/ijcmas.2018.712.084