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The Essentials of Nucleotide Sugars Lance Wells

The Essentials of Nucleotide Sugarsglycobiology/NSandTransportLWJan17.pdf · Galactosemia and potentially CDGs?? (for ‘19 lecture) Conversion of activated sugar donors ... NSandTransportLWJan17.pptx

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Page 1: The Essentials of Nucleotide Sugarsglycobiology/NSandTransportLWJan17.pdf · Galactosemia and potentially CDGs?? (for ‘19 lecture) Conversion of activated sugar donors ... NSandTransportLWJan17.pptx

The Essentials of Nucleotide Sugars !

!Lance Wells

Page 2: The Essentials of Nucleotide Sugarsglycobiology/NSandTransportLWJan17.pdf · Galactosemia and potentially CDGs?? (for ‘19 lecture) Conversion of activated sugar donors ... NSandTransportLWJan17.pptx
Page 3: The Essentials of Nucleotide Sugarsglycobiology/NSandTransportLWJan17.pdf · Galactosemia and potentially CDGs?? (for ‘19 lecture) Conversion of activated sugar donors ... NSandTransportLWJan17.pptx

X 11

Page 4: The Essentials of Nucleotide Sugarsglycobiology/NSandTransportLWJan17.pdf · Galactosemia and potentially CDGs?? (for ‘19 lecture) Conversion of activated sugar donors ... NSandTransportLWJan17.pptx

Sugar Activated form Glc

] UDP-sugar

Gal GlcNAc GalNAc GlcA Xyl Man ] GDP-sugar Fuc Sia ] CMP-Sia !

Sugar Nucleotides (high energy donors) in Mammals

What mammalian sugars are missing? IdoA (epimerized in glycan chains, not added)

Ribitol (CDP-ribitol, new sugar nucleotide/O-Man structures)

Page 5: The Essentials of Nucleotide Sugarsglycobiology/NSandTransportLWJan17.pdf · Galactosemia and potentially CDGs?? (for ‘19 lecture) Conversion of activated sugar donors ... NSandTransportLWJan17.pptx
Page 6: The Essentials of Nucleotide Sugarsglycobiology/NSandTransportLWJan17.pdf · Galactosemia and potentially CDGs?? (for ‘19 lecture) Conversion of activated sugar donors ... NSandTransportLWJan17.pptx

Glucose is only Sugar Needed for Synthesis of All Sugar Nucleotides

Note: No salvage Pathway for GlcA!

Key  Control  Points:  Early  step  enzymes  that  are    inhibited  by  end-­‐product  Sugar  nucleo<de  

Page 7: The Essentials of Nucleotide Sugarsglycobiology/NSandTransportLWJan17.pdf · Galactosemia and potentially CDGs?? (for ‘19 lecture) Conversion of activated sugar donors ... NSandTransportLWJan17.pptx

Salvage PathwaysExample: Glc à Glc-6-P à Glc-1-P à UDP-Glc

Example: Fuc à Fuc-1-P à UDP-Fuc

Example: Neu5Ac à CMP-Neu5Ac

None or Unknown:

Page 8: The Essentials of Nucleotide Sugarsglycobiology/NSandTransportLWJan17.pdf · Galactosemia and potentially CDGs?? (for ‘19 lecture) Conversion of activated sugar donors ... NSandTransportLWJan17.pptx

General Principles for Synthesis

1:  ini&ated  by  kinase  reac&on,  consumes  2  NTP    example:  Glc  à  Glc-­‐6-­‐PàGlc-­‐1-­‐PàUDP-­‐Glc  

 2:  mul&ple  ways  (epimeriza&on,  decarboxyla&on,  etc.)  

 example:  UDP-­‐GlcNAcàUDP-­‐GalNAc  ;  UDP-­‐GlcA  àUDP-­‐Xyl    3:    nucleo&de-­‐exchange  reac&on  

 example  Gal-­‐1-­‐P  +UDP-­‐Glc  à  Glc-­‐1-­‐P  +  UDP-­‐Gal  

Page 9: The Essentials of Nucleotide Sugarsglycobiology/NSandTransportLWJan17.pdf · Galactosemia and potentially CDGs?? (for ‘19 lecture) Conversion of activated sugar donors ... NSandTransportLWJan17.pptx
Page 10: The Essentials of Nucleotide Sugarsglycobiology/NSandTransportLWJan17.pdf · Galactosemia and potentially CDGs?? (for ‘19 lecture) Conversion of activated sugar donors ... NSandTransportLWJan17.pptx

Leloir PathwayUDP-Gal/UDP-Glc

AndUDP-GalNAc/UDP-GlcNAc

Interconversion

Page 11: The Essentials of Nucleotide Sugarsglycobiology/NSandTransportLWJan17.pdf · Galactosemia and potentially CDGs?? (for ‘19 lecture) Conversion of activated sugar donors ... NSandTransportLWJan17.pptx

Galactosemia and potentially CDGs?? (for ‘19 lecture)

Page 12: The Essentials of Nucleotide Sugarsglycobiology/NSandTransportLWJan17.pdf · Galactosemia and potentially CDGs?? (for ‘19 lecture) Conversion of activated sugar donors ... NSandTransportLWJan17.pptx

Conversion of activated sugar donors

Chapter 4 Figure 2 Essentials of Glycobiology

Second Edition

Generation of UDP-GlcNAc

Page 13: The Essentials of Nucleotide Sugarsglycobiology/NSandTransportLWJan17.pdf · Galactosemia and potentially CDGs?? (for ‘19 lecture) Conversion of activated sugar donors ... NSandTransportLWJan17.pptx

UDP-GlcNAc as a Nutrient Sensor

GDP-Fuc from GDP-Man UDP-GlcA from UDP-Glc

Page 14: The Essentials of Nucleotide Sugarsglycobiology/NSandTransportLWJan17.pdf · Galactosemia and potentially CDGs?? (for ‘19 lecture) Conversion of activated sugar donors ... NSandTransportLWJan17.pptx

UDP-Xyl from UDP-GlcA

Reminder: No salvage pathway for GlcA (not clear for Xyl)

CMP-Sialic AcidSynthesis

Page 15: The Essentials of Nucleotide Sugarsglycobiology/NSandTransportLWJan17.pdf · Galactosemia and potentially CDGs?? (for ‘19 lecture) Conversion of activated sugar donors ... NSandTransportLWJan17.pptx
Page 16: The Essentials of Nucleotide Sugarsglycobiology/NSandTransportLWJan17.pdf · Galactosemia and potentially CDGs?? (for ‘19 lecture) Conversion of activated sugar donors ... NSandTransportLWJan17.pptx

Glucose is only Sugar Needed for Synthesis of All Sugar Nucleotides

Note: No salvage Pathway for GlcA!

Key  Control  Points:  Early  step  enzymes  that  are    inhibited  by  end-­‐product  Sugar  nucleo<de  

Page 17: The Essentials of Nucleotide Sugarsglycobiology/NSandTransportLWJan17.pdf · Galactosemia and potentially CDGs?? (for ‘19 lecture) Conversion of activated sugar donors ... NSandTransportLWJan17.pptx

Transporters for nucleotide sugars

Chapter 4, Figure 4 Essentials of Glycobiology

Second Edition

Page 18: The Essentials of Nucleotide Sugarsglycobiology/NSandTransportLWJan17.pdf · Galactosemia and potentially CDGs?? (for ‘19 lecture) Conversion of activated sugar donors ... NSandTransportLWJan17.pptx
Page 19: The Essentials of Nucleotide Sugarsglycobiology/NSandTransportLWJan17.pdf · Galactosemia and potentially CDGs?? (for ‘19 lecture) Conversion of activated sugar donors ... NSandTransportLWJan17.pptx

Getting sugars in cells

Page 20: The Essentials of Nucleotide Sugarsglycobiology/NSandTransportLWJan17.pdf · Galactosemia and potentially CDGs?? (for ‘19 lecture) Conversion of activated sugar donors ... NSandTransportLWJan17.pptx

Dolichol phosphate: The “other” high energy sugar donor

Chapter 8, Figure 2Essentials of Glycobiology

Second Edition

Dol-P-Man N-link, O-Man, C-Man, GPI anchors

Dol-P-Glc N-linked biosynthesis

Dol-P-GlcNAc N-linked biosynthesis

Generated enzymatically using corresponding sugar

nucleotides (GDP-Man, UDP-Glc, UDP-GlcNAc)…must be “flipped” into lumen of ER

Chapter 4, Figure 1

Biosynthesis and interconversion of monosaccharides

Essentials of Glycobiology Second Edition