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Science and eol.org Yes we can! @cydpa rr @eol

EOL and Science: Yes we can!

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A six-minute talk presented in the Smithsonian National Museum of Natural History Senate of Scientists Lightnng Round 2, 13 April 2012i

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Page 1: EOL and Science: Yes we can!

Science and eol.orgYes we can! @cydparr

@eol

Page 2: EOL and Science: Yes we can!

EOL Scope & Engagement

• All species• Global• Many audiences

– enthusiasts– learners– citizen scientists– scientists

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EOL aggregates and curates

Scientific Databases, includingBHL, GBIF, ALA, INBio, COL, Scratchpads, LifeDesks Scientific Journals Curate

CommentRate, Collect

eol.orgAggregate

API

Third party apps

Quality control, prioritization

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Summarizing knowledgeNot managing raw data

… summaries can be data, too.Erosaria caputserpentisSerpent's Head Cowrie

Depth range based on 51 specimens in 2 taxa.Water temperature and chemistry ranges based on 40 samples.

Environmental ranges Depth range (m): -5 - 67 Temperature range (°C): 23.011 - 28.496 Nitrate (umol/L): 0.048 - 0.923 Salinity (PPS): 33.821 - 35.837 Oxygen (ml/l): 4.349 - 4.825 Phosphate (umol/l): 0.088 - 0.228 Silicate (umol/l): 0.983 - 4.026

From Moorea Biocode

From GBIFFrom OBIS

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Erosaria caputserpentisSerpent's Head Cowrie

Salinity envelope (n=40)

From OBIS

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Citation of Biodiversity Heritage Library

BHL assigned 40,000 Digital Object Identifiers to monograph titles In 5 months ending March 2012, there were 5,333 resolution attempts (i.e. uses) of the DOIs for 4,562 unique titles.

From Martin Kalfatovic

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Using EOL collections to get computable data

Step 1: Search on EOL for organisms with characteristics of interest. Add each one to an EOL collection. Step 2: Write a program using EOL API methods to retrieve the external database identifiers for the species in that collection.Step 3: Add to your program code to retrieve data using external database APIs.Step 4: Analyze, rinse, repeat.

From Arthur Chapman

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Crowd-sourcing for computable data

Lovell and Libby Langstroth, Calphotos Foodwebs.org

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We can do morePhylogenetic tree challenge

http://eol.org/info/tree_challengeFree trip to iEvoBio, deadline 15 April

Computable data challengehttp://eol.org/info/data_challenge$50,000, deadline 22 May

Semantic reasoning workshop, in September

The Smithsonian’s Phenotype Repository or Gateway?

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Summing up• EOL offers powerful aggregating, summarizing,

searching, curating, and crowd-sourcing features• EOL content is already usable for research• Enhancements to EOL for science research are

underway

What questions do you want to answer?What data or features do you need?

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Our fundersJohn D. and Catherine T. MacArthur FoundationAlfred P. Sloane FoundationSmithsonian InstitutionMarine Biological LaboratoryHarvard UniversityDavid Rubenstein and other funders and donors

All our content providers and global partners

Volunteer curators and individual contributors via Flickr, Wikimedia, and members of EOL

Thanks to